Citrus Sinensis ID: 000626
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | 2.2.26 [Sep-21-2011] | |||||||
| Q10251 | 1079 | Eukaryotic translation in | yes | no | 0.445 | 0.570 | 0.584 | 0.0 | |
| P39730 | 1002 | Eukaryotic translation in | yes | no | 0.426 | 0.588 | 0.558 | 0.0 | |
| O60841 | 1220 | Eukaryotic translation in | yes | no | 0.427 | 0.484 | 0.550 | 0.0 | |
| Q05D44 | 1216 | Eukaryotic translation in | yes | no | 0.427 | 0.486 | 0.550 | 0.0 | |
| B2GUV7 | 1216 | Eukaryotic translation in | yes | no | 0.427 | 0.486 | 0.550 | 0.0 | |
| Q5RDE1 | 1220 | Eukaryotic translation in | yes | no | 0.427 | 0.484 | 0.536 | 0.0 | |
| Q54XP6 | 1045 | Eukaryotic translation in | yes | no | 0.432 | 0.573 | 0.516 | 0.0 | |
| A8A8D3 | 609 | Probable translation init | yes | no | 0.410 | 0.932 | 0.410 | 1e-122 | |
| A3DMS0 | 606 | Probable translation init | yes | no | 0.414 | 0.945 | 0.406 | 1e-118 | |
| Q9Y9B3 | 617 | Probable translation init | yes | no | 0.414 | 0.930 | 0.396 | 1e-113 |
| >sp|Q10251|IF2P_SCHPO Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/636 (58%), Positives = 477/636 (75%), Gaps = 20/636 (3%)
Query: 764 DAVTRKKEPAAKSKEPEVDATPKQA-------EENLRSPICCIMGHVDTGKTKLLDCIRG 816
DAV + SK +VD P+ A E +LRSPICCI+GHVDTGKTKLLD +R
Sbjct: 447 DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVDTGKTKLLDNLRR 506
Query: 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK--VPGLLVIDTPGHESFTNLR 874
+NVQEGEAGGITQQIGATYFP E+I+++T+ + L+ +PGLL+IDTPGHESFTNLR
Sbjct: 507 SNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESFTNLR 566
Query: 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934
SRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T F+VALNKVDRLYGW + ++ I
Sbjct: 567 SRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRLYGWHSIKDNAIQ 626
Query: 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994
++ +Q +Q EF R+ I+ QL EQG+N LY++NK+ G ++VPTSA SGEG+PD
Sbjct: 627 DSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFENKNLGRYVSLVPTSAQSGEGVPD 686
Query: 995 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1054
L+ LL+ TQ M +++ + L+CTVLEVKVIEG G TIDV+L NGVLHEGD+IV+CG+
Sbjct: 687 LVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLGATIDVILSNGVLHEGDRIVLCGM 746
Query: 1055 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114
GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G+KI A LE A+AG+ L VVGPD
Sbjct: 747 GGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLVVGPD 806
Query: 1115 DDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIG 1174
DD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK +KIPV+ ++IG
Sbjct: 807 DDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVASVNIG 864
Query: 1175 PVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1234
PV+KKDVMR + MLEK KEYA +L FDVKV +A +LAE+LGVKIF A++IYHLFD FTA
Sbjct: 865 PVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTA 924
Query: 1235 YINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC----I 1290
+ + E+K+ E++D AVFPCVLK + FNK+DPI+LGVDVVEG+ ++ TPI +
Sbjct: 925 HQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGVDVVEGVLRINTPIVAVKQL 982
Query: 1291 PQRD--FIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVS 1348
P + I++GR+AS+E NHKPVD KKGQ A S Q +FGR D L S
Sbjct: 983 PNGEPQIIELGRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGRQVTESDALYS 1042
Query: 1349 HISRKSIDVLK-ANYRDDLSMDEWRLLVKLKNLFKI 1383
HI+R+SID LK +RD++S DEW+L+++LK LF I
Sbjct: 1043 HITRQSIDSLKDPAFRDEVSRDEWQLIIQLKKLFGI 1078
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN12 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/605 (55%), Positives = 448/605 (74%), Gaps = 15/605 (2%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 850
+LRSPICCI+GHVDTGKTKLLD IR TNVQ GEAGGITQQIGATYFP + I+ +T+ +
Sbjct: 402 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAE 461
Query: 851 --NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
T VPGLLVIDTPGHESF+NLRSRGS LC+IAILV+DIMHGLE QTIES+ LL+ R
Sbjct: 462 YEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQTIESIKLLRDR 521
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
F+VALNK+DRLY WK N + +Q+ VQ EF R +I +L EQG+N+EL
Sbjct: 522 KAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEEFQSRYSKIQLELAEQGLNSEL 581
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIE 1028
Y++NK+ + +IVPTSA++GEG+PDLL LL++ TQK M ++L + + ++ T+LEVKV+E
Sbjct: 582 YFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVEATILEVKVVE 641
Query: 1029 GHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088
G GTTIDV+L NG L EGD+IV+CG+ GPIVT IRALLTP P++ELR+K Y+HHK++KA
Sbjct: 642 GFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYVHHKEVKA 701
Query: 1089 AQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAST 1148
A G+KI A LE A++G+ L VVGP+DD +++ ++ M+D+ ++ +D +G+GV VQAST
Sbjct: 702 ALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTTGKGVVVQAST 761
Query: 1149 LGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEA 1208
LGSLEALL+FLK +KIPV I +GPV+K+DVM+AS MLEK EYA +L FDVKV EA
Sbjct: 762 LGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVMLCFDVKVDKEA 819
Query: 1209 RELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKK 1268
+ AE+ G+KIF AD+IYHLFD FTAY L EE++++ D A+FPCVL+ L + NK+
Sbjct: 820 EQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKR 877
Query: 1269 DPIVLGVDVVEGIAKVGTPIC-------IPQRDFIDIGRIASIENNHKPVDTAKKGQKAA 1321
P+++GVDV+EG +VGTPIC +R + +G++ S+E NH+PV KKGQ AA
Sbjct: 878 GPMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPVQEVKKGQTAA 937
Query: 1322 -IKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK-ANYRDDLSMDEWRLLVKLKN 1379
+ + + QQ ++GRH D D L S +SR+SID LK +RD ++ +W LL KLK
Sbjct: 938 GVAVRLEDPSGQQPIWGRHVDENDTLYSLVSRRSIDTLKDKAFRDQVARSDWLLLKKLKV 997
Query: 1380 LFKIQ 1384
+F I+
Sbjct: 998 VFGIE 1002
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4 | Back alignment and function description |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQYIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1327
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1164
Query: 1328 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Homo sapiens (taxid: 9606) |
| >sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1327
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1160
Query: 1328 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1161 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Mus musculus (taxid: 10090) |
| >sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1327
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1160
Query: 1328 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1161 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Rattus norvegicus (taxid: 10116) |
| >sp|Q5RDE1|IF2P_PONAB Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/596 (53%), Positives = 432/596 (72%), Gaps = 5/596 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHG EPQ ++ NL K
Sbjct: 687 NFGRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGGEPQKMKPTNLPKP 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ F+VALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFMVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ + AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEKFKHIAVFPCKMKILPQYIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1327
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1164
Query: 1328 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Pongo abelii (taxid: 9601) |
| >sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1 | Back alignment and function description |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/608 (51%), Positives = 433/608 (71%), Gaps = 9/608 (1%)
Query: 779 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 838
P D T A+++ RSPI CI+GHVDTGKT LLD IR TNVQ GEA GITQQIGA++ P
Sbjct: 445 PTTDPTTTFADKSYRSPIICILGHVDTGKTSLLDKIRNTNVQGGEARGITQQIGASFIPV 504
Query: 839 ENIRERTREL--KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 896
+ I+E+T+ K K+PGLL+IDTPGHESF NLRSRGSGLCD+AILV+DIMHGL+
Sbjct: 505 DAIKEQTKSFAEKIKMDFKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLQA 564
Query: 897 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956
QT+ES+NLL+MR T FIVALNKVDR+Y WK C N +A K Q+ EF+ ++ I+
Sbjct: 565 QTLESINLLRMRKTPFIVALNKVDRIYDWKPCVNTDFKEAYKIQSKSAAQEFDYKVKDII 624
Query: 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE 1016
L Q +N ELY++NKD + ++VPTSA +GEGI DL+L+++Q QK M++K+ F N+
Sbjct: 625 AALAGQELNAELYWRNKDHRKYVSLVPTSANTGEGISDLMLVVIQLMQKLMLDKVEFTNQ 684
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1076
LQCT+LEVKVIEG GTTIDVVLVNG L+EGD+IVV G GPI T+IR+LLTP P++E RV
Sbjct: 685 LQCTLLEVKVIEGFGTTIDVVLVNGTLNEGDKIVVSGFNGPIETSIRSLLTPPPLRESRV 744
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRID 1136
K +++HK I+AA GIKI A GLE A+ GT L+VVGP+DD+E ++ EA ++ SV++ ++
Sbjct: 745 KSQFINHKSIRAAMGIKIVAPGLEKAVPGTSLHVVGPNDDIEKIRAEAKREVDSVLNDVE 804
Query: 1137 KSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYAT 1196
SG GV VQASTLGSLEA L FLK +KIPV+ ++IGPVHKK +M AS+ML+K +YA
Sbjct: 805 TSGIGVSVQASTLGSLEAFLNFLKK--IKIPVANVAIGPVHKKHIMNASIMLDKDPKYAI 862
Query: 1197 ILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCV 1256
+LAFDVK+ A + A E+ V++ + IY ++ + +KE+ + E A V+PC+
Sbjct: 863 LLAFDVKIEESAIQAANEMKVQVLSDETIYLFEEKLKKHFGAIKEKLRAETASICVWPCI 922
Query: 1257 LKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKK 1316
L++ VF +PI++GV V EG ++GTPIC+P+ + D+G++ I+ N K V AKK
Sbjct: 923 LEV--TNVFRNSNPILVGVRVKEGTLRIGTPICVPESNCADVGKVIGIKLNEKDVTLAKK 980
Query: 1317 GQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVK 1376
++ I +N+ + RHFD + + +S I+R+S+D LK + +DL+ + +LL
Sbjct: 981 DDVVSVAIDDNNT---KTTIYRHFDDKKQWMSKITRESLDALKEGWSEDLTKQDIQLLKF 1037
Query: 1377 LKNLFKIQ 1384
+K ++KIQ
Sbjct: 1038 MKTVYKIQ 1045
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Dictyostelium discoideum (taxid: 44689) |
| >sp|A8A8D3|IF2P_IGNH4 Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/584 (41%), Positives = 365/584 (62%), Gaps = 16/584 (2%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK- 849
LR PI ++GHVD GKT LLD IRGT V E G ITQ IGA+ P + I + T LK
Sbjct: 11 RLRQPIVAVLGHVDHGKTTLLDKIRGTVVALKEPGQITQHIGASLVPTDVIEKVTEPLKK 70
Query: 850 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L++PGLL IDTPGHE F+NLR RG + D+AILVVD+ G +PQT E++ +LK
Sbjct: 71 IIPTVKLELPGLLFIDTPGHEIFSNLRRRGGAVADLAILVVDLNEGFQPQTYEAVEILKQ 130
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
R F+VA NK+DR+ GW++ + P + + ++Q+ +V+ + ++ +I+ +L + G ++E
Sbjct: 131 RRVPFVVAANKIDRIPGWRSYPDQPFLISYRKQSEEVRERLDNKIYEIMGELAKLGFDSE 190
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEVKV 1026
+ + + IVP SA +GEGIP+LL +L Q+ M +L + + ++EVK
Sbjct: 191 RFDRITNFTRQIAIVPISAKTGEGIPELLAVLAGLAQRYMKGRLKYVEGPAKGVIMEVKE 250
Query: 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086
G+G+TID ++ +G++ +GD IVV G++GPIVT +RALL P P+ E+R + +++
Sbjct: 251 EPGYGSTIDTIIYDGIIRQGDTIVVGGIEGPIVTKVRALLVPAPLTEMRATKRFEPVEEV 310
Query: 1087 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1146
AA G+KI A GLE A+AG +YVV + LE++KE+ +++ VM DK EGV V+A
Sbjct: 311 SAAAGVKIVAPGLEKAVAGAPVYVVDSPEKLEELKEQVKREVEEVMIETDK--EGVIVKA 368
Query: 1147 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
TLG+LEAL++FLK+ IPV +GPV K+D++ A + K KEY ILAF+VKV P
Sbjct: 369 DTLGTLEALVQFLKNRG--IPVRMARVGPVTKRDIVEAMTVKSKNKEYGVILAFNVKVLP 426
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
EA+ELAE+ G+KIF ++IY L ++F ++ L+EE+KR+ + V P ++ILP VF
Sbjct: 427 EAKELAEKEGIKIFQHNVIYRLIEEFEEWLKALREEEKRKVLETLVRPGKIRILPGFVFR 486
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1326
+ DP ++GV+V+ G+ K P+ + D +G I I++ + V A+ GQ+ AI I G
Sbjct: 487 RSDPAIVGVEVLGGVIKPKYPLM--KEDGSRVGSILQIQDKGQSVPEARAGQQVAISIKG 544
Query: 1327 SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1370
+ M GRH D L + + + + ++++LS DE
Sbjct: 545 ------RVMVGRHIHEGDVLYTDVPAEHAKLWLTKFKNELSDDE 582
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) (taxid: 453591) |
| >sp|A3DMS0|IF2P_STAMF Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/590 (40%), Positives = 361/590 (61%), Gaps = 17/590 (2%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 845
K + +R PI ++GHVD GKT LLD IRGT V + E G ITQ +GA+ PA +R+
Sbjct: 5 KSGKSWIRQPIVVVLGHVDHGKTTLLDKIRGTAVAKKEPGEITQHVGASIVPASVLRKVA 64
Query: 846 RELK---ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
LK +++PGLL +DTPGHE F+NLR RG + DIAILVVDIM G +PQT ES+
Sbjct: 65 EPLKKYFPKLKIEIPGLLFVDTPGHELFSNLRRRGGSVADIAILVVDIMEGFQPQTWESI 124
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
+LK R FIVA NK+DR+ GWK + P ++ I++Q+ + + + ++++QL E
Sbjct: 125 QILKERKVPFIVAANKIDRIPGWKPNHDQPFLETIRKQDPRIVSRLEELIYRLISQLYEA 184
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE-LQCTV 1021
G E + + KD T IVP SA +GEG+P+LL LL Q+ M ++L E + V
Sbjct: 185 GFMAERFDRVKDFRTTVAIVPVSAKTGEGVPELLALLTGLVQRFMKKRLVTSEEPAKGVV 244
Query: 1022 LEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTY 1080
LEVK G GTTIDV++ +GV+ GD IVV G PIVT +RALL P P++++R G +
Sbjct: 245 LEVKEEPGLGTTIDVIIYDGVIRRGDTIVVGGKDKPIVTKVRALLMPRPLQDMRAHEGKF 304
Query: 1081 LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGE 1140
+ +Q+ AA G+KI+A L++A+AG+ ++VV +D +E+ + E+++SV RI
Sbjct: 305 VSVEQVVAATGVKISAPDLDNALAGSPIFVVPSEDKIEEYIKIVKEEIESV--RIKTDNI 362
Query: 1141 GVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1200
GV V+A TLG+LEA++E LK + IPV +GPV K DV+ ASV + EY I+AF
Sbjct: 363 GVVVKADTLGTLEAVVEALKRE--NIPVRLADVGPVSKNDVLEASVSKNHRPEYGVIIAF 420
Query: 1201 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKIL 1260
+VK+ PEA E A VKIF ++IY L + + ++ L+E++K + + + P ++IL
Sbjct: 421 NVKILPEAEEYAARENVKIFRHNVIYKLIEDYIGWVKQLREQEKIKELESLIRPGKIRIL 480
Query: 1261 PNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKA 1320
P +F + +P ++GV+V+ G+ K G P+ ++D + +G I I + + A+ GQ
Sbjct: 481 PGYIFRRSNPAIVGVEVIGGVIKPGYPLM--RKDGMRLGTIMQIRDRDNVLKEARAGQSV 538
Query: 1321 AIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1370
AI I G + + GRH D D L + I ++ + + Y+++LS DE
Sbjct: 539 AISIRG------RILVGRHVDEGDILYTDIPKQHVHLWLTKYKNELSDDE 582
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550) |
| >sp|Q9Y9B3|IF2P_AERPE Probable translation initiation factor IF-2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/590 (39%), Positives = 352/590 (59%), Gaps = 16/590 (2%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 848
E LR PI ++GHVD GKT LLD IR T V EAGGITQ IGA+ PA+ I + L
Sbjct: 11 ERRLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPL 70
Query: 849 KANATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 906
K +K +PGLL IDTPGHE F+NLR RG + D AILVVDIM G +PQT E+L LLK
Sbjct: 71 KKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELLK 130
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
R F++A NK+DR+ GWK +AP ++ I++Q+ V+ R+ +IV ++ E G+
Sbjct: 131 ERRVPFLIAANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLPA 190
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEVK 1025
EL+ + KD IVP SA +GEGIP+LL +L TQ + E+L + + VLEVK
Sbjct: 191 ELFTRIKDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVK 250
Query: 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTYLHHK 1084
++G GT +D V+ +GVL + D IVV G +GPIVT +RALL P P++++R + ++
Sbjct: 251 EMQGFGTVVDAVIYDGVLKKEDIIVVGGREGPIVTRVRALLMPAPLQDIRSREARFVQVD 310
Query: 1085 QIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCV 1144
++ AA G++I A GL+ IAG+ +Y +++ + E +++ + R + GV V
Sbjct: 311 RVYAAAGVRIAAPGLDDVIAGSPIYAAESEEEARKLMEAVQREIEELRFRTENI--GVVV 368
Query: 1145 QASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKV 1204
+A TLG+LEAL+E L+ V PV IGPV + DV+ A+V + +LAF+VKV
Sbjct: 369 KADTLGTLEALVEALRRRGV--PVRLADIGPVSRSDVLDAAVTRKIDPYLGVVLAFNVKV 426
Query: 1205 TPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264
PEA E A GVKIF +IY L + + ++ KE ++ +A + + P +ILP V
Sbjct: 427 LPEAEEEASRAGVKIFRESMIYKLIEDYEEWVKKEKEAERLKALNSLIRPGKFRILPGYV 486
Query: 1265 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKI 1324
F + DP ++GV+V+ G+ + G P+ Q ++GRI +I++ + ++ A+ G A+ I
Sbjct: 487 FRRSDPAIVGVEVLGGVIRPGYPVMDSQGR--ELGRIMAIKDRDRSLEEARLGAAVAVSI 544
Query: 1325 AGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLL 1374
G + + GRH + D L +++ + + ++D +S DE +L
Sbjct: 545 QG------RILIGRHANEGDILYTNVPAQHAYKILTEFKDLVSKDELDVL 588
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | ||||||
| 359493041 | 1393 | PREDICTED: uncharacterized protein LOC10 | 0.823 | 0.818 | 0.707 | 0.0 | |
| 224120424 | 1331 | predicted protein [Populus trichocarpa] | 0.716 | 0.744 | 0.754 | 0.0 | |
| 449443744 | 1370 | PREDICTED: uncharacterized protein LOC10 | 0.721 | 0.729 | 0.733 | 0.0 | |
| 449475431 | 1370 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.721 | 0.729 | 0.732 | 0.0 | |
| 357443693 | 1438 | Eukaryotic translation initiation factor | 0.810 | 0.780 | 0.677 | 0.0 | |
| 297842433 | 1252 | hypothetical protein ARALYDRAFT_895554 [ | 0.798 | 0.882 | 0.648 | 0.0 | |
| 255574361 | 1263 | translation initiation factor if-2, puta | 0.884 | 0.969 | 0.608 | 0.0 | |
| 6143896 | 1280 | putative translation initiation factor I | 0.797 | 0.862 | 0.663 | 0.0 | |
| 42563275 | 1294 | translation initiation factor eIF-5B [Ar | 0.798 | 0.853 | 0.657 | 0.0 | |
| 23452071 | 861 | translation initiation factor [Pisum sat | 0.575 | 0.924 | 0.758 | 0.0 |
| >gi|359493041|ref|XP_002267014.2| PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1391 bits (3601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1233 (70%), Positives = 978/1233 (79%), Gaps = 93/1233 (7%)
Query: 228 DKDEEDEP--VIFTDKKKKSKKSGKNS-STFDLLVNENDDV------KEDKDE-DDEPIT 277
+K E D+P + FT KKK SK + K S+FD+L +E D + ++ DE DD P+
Sbjct: 178 NKSENDDPPVIAFTGKKKSSKGNKKGGVSSFDVL-DEADGIDSTISEQQSVDEADDAPVI 236
Query: 278 FTDKKKKSNK-----GGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSK 332
FT KKK S G +S+F+ L D+D DEK ++DE+ I F+ KKK + SSK
Sbjct: 237 FTGKKKSSKANKKGGGNVFAASSFEGLGEGDKDSDEKNEEDEDIASIAFSGKKKSSNSSK 296
Query: 333 KTVSSFS----------EVLLDEENVVED--------------------APVLS------ 356
KT + FS +V + E VED VLS
Sbjct: 297 KTSNIFSVASDDEDKDEDVSVSEAAQVEDEEDASKIAFSGKKKSSKKKNNNVLSETGLGT 356
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKG-EVVAQTSKNKKKKKEKEKPRSERTAQEEDDL 415
D++ V+++Q S + E +D K NK V +TSKNKKKKK +S RTAQEEDDL
Sbjct: 357 DLADVVESEQPSVGTVDNEGNDSKSNKQVSGVVETSKNKKKKK-----KSGRTAQEEDDL 411
Query: 416 EKILAELGQGPA------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKK 469
+KILAELG+G + PQEEKVQVQP EPV DA EK GEEE ESAA+KKKKKKK
Sbjct: 412 DKILAELGEGSSSLKPTTPQEEKVQVQP-EPVQAADATVEKEGEEEGVESAAAKKKKKKK 470
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
EKEKEKKAAAAA G E E K+ + KSK P+KK+ K VREMQEALARRKEAEE
Sbjct: 471 EKEKEKKAAAAA----AAAGAVEVKEEKQVETKSKVPDKKLPKHVREMQEALARRKEAEE 526
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKKREEEERLRKEEEER+R EELER AEEAKRRKKE+EKEKLLKKKQEGKLLTGKQKEEA
Sbjct: 527 RKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEA 586
Query: 590 RRLEAMRNQFLAK--GIPLPTGDKEAASKRPKYQTKKKSAH-HQANGAVPLKEDSIESKE 646
RR EAMRNQ LA G+P+ TGD A +KRPKYQTKK +H QANGA P K D E+ E
Sbjct: 587 RRREAMRNQILANAGGLPISTGD--APTKRPKYQTKKVKSHPSQANGAAPSKPD--ENTE 642
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
++ ET+ EVD E EK+EE +S+ VEEK EI +A +EN VEEE+DD++ + AKSWD
Sbjct: 643 AKESLPETVSEVDSLEPEKLEEVDSVDVEEKLEITNATEENGVEEEEDDEEWD--AKSWD 700
Query: 707 D--VNLNVKGAFDDEEADSEPEPLVKKEIK-SAIPSPRD-----AAEKPAVAVKKAIPEQ 758
D V L K AF DEEADSE EP+V+KE K +A+P+ R+ AA K ++ K A+P Q
Sbjct: 701 DAVVTLPDKSAFADEEADSETEPVVRKETKVAALPASRNVGVTTAAAKTSIVPKTAVPTQ 760
Query: 759 PLKSQDAVTRKKE-------PAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLL 811
P+K+QD + K + + K P DA+P+ EENLRSPICCIMGHVDTGKTKLL
Sbjct: 761 PIKTQDVRSEKSQIEIEVTNKSRKKAAPSSDASPQGTEENLRSPICCIMGHVDTGKTKLL 820
Query: 812 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871
DCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFT
Sbjct: 821 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADANLKVPGLLVIDTPGHESFT 880
Query: 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931
NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK CRN+
Sbjct: 881 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNS 940
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
PI KA+KQQ+ DVQNEFNMRL QI+TQ KEQG+NTELYYKNK+ GETF+IVPTSAISGEG
Sbjct: 941 PIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEG 1000
Query: 992 IPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV 1051
IPDLLLLLV WTQKTMVEKLT+ +E+QCTVLEVKV+EGHGTTIDVVLVNGVLHEGDQIVV
Sbjct: 1001 IPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVV 1060
Query: 1052 CGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111
CG+QGPIV TIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV
Sbjct: 1061 CGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1120
Query: 1112 GPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGI 1171
GPDDDLED+KE AMEDMKSV+SRIDKSGEGV VQASTLGSLEALLEFLKS AV IPVSGI
Sbjct: 1121 GPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGI 1180
Query: 1172 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQ 1231
IGPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+++GVKIFIADIIYHLFDQ
Sbjct: 1181 GIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQ 1240
Query: 1232 FTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIP 1291
F AYI+NLKEEKKREAADEAVFPCVLKI+PNC+FNKKDPIVLGVDV+EGIAKVGTPICIP
Sbjct: 1241 FKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIP 1300
Query: 1292 QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHIS 1351
QRDFIDIGRIASIENNHKPVD AKKGQ+ AIKI +N EEQQKMFGRHF++EDELVSHIS
Sbjct: 1301 QRDFIDIGRIASIENNHKPVDIAKKGQRVAIKITSTNPEEQQKMFGRHFEMEDELVSHIS 1360
Query: 1352 RKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
RKSID LKANYRDDLS+DEW+L+VKLK LFKIQ
Sbjct: 1361 RKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ 1393
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120424|ref|XP_002318326.1| predicted protein [Populus trichocarpa] gi|222858999|gb|EEE96546.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1344 bits (3478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1042 (75%), Positives = 873/1042 (83%), Gaps = 51/1042 (4%)
Query: 372 SIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA---- 427
+IVE++D KV K E VA+TSKNKKKKK K S RTAQEEDDL+KILAELG G +
Sbjct: 312 NIVEANDSKVTKSEAVAETSKNKKKKKGK----SGRTAQEEDDLDKILAELGGGASTLKP 367
Query: 428 ----PQEEKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
PQEEK+ VQP EPVA PDA E+ EE KKK+K+KEK+ AAA
Sbjct: 368 SESPPQEEKLNVQP-EPVAVPDALVEKEGEEEKEESAAAKKKKKKKEKEKEKKVAAAAAA 426
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
AA E ++ K+E E KK D K K EKK+ K VREMQEALARRKE EERK +EEEE+
Sbjct: 427 AAKEEKLEEAKAETSEPKKTDAKGKAAEKKLPKHVREMQEALARRKEMEERKAKEEEEKR 486
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
RKEEEER R EELERQAEEA+RRKKE+EKEKLLKKKQEGKLLTGKQKEE RRLEAMRNQ
Sbjct: 487 RKEEEERLRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQI 546
Query: 600 LAK-GIPLPTGDKE-AASKRPKYQTKK-KSAHHQANGAVPLK-EDSIESKEKEQEKQETL 655
LA GI +PT D++ A +KRP+YQTKK K AHHQANG +K E+ +E+K KEQE+QE +
Sbjct: 547 LANAGITVPTADRDNAPTKRPRYQTKKSKPAHHQANG---IKIEEHVEAKGKEQEEQEEV 603
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
EV+ E EK E E EEK E+A P+EN +EE+DDD EEWDAKSWDDVNLNVKGA
Sbjct: 604 HEVETVELEKAEPVE----EEKTEVASVPEENGMEEDDDD--EEWDAKSWDDVNLNVKGA 657
Query: 716 FDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDA---------- 765
FDDEE DSEPEP++KKE KS++P+ R A KPA+AV+K + QP+ S+D
Sbjct: 658 FDDEE-DSEPEPVLKKETKSSVPASRGADAKPAIAVRKPVTSQPMDSRDVENKKIQTEVE 716
Query: 766 ---VTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG 822
RKK+ A K+K DA PKQ EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG
Sbjct: 717 VSDKNRKKDAAVKNKGAVSDAIPKQGEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG 776
Query: 823 EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCD 882
EAGGITQQIGATYFPAENIRERT+ELKA+A L VPGLLVIDTPGHESFTNLRSRGSGLCD
Sbjct: 777 EAGGITQQIGATYFPAENIRERTKELKADAKLNVPGLLVIDTPGHESFTNLRSRGSGLCD 836
Query: 883 IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942
IAILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLY WK RNAPI KA+KQQ+
Sbjct: 837 IAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYAWKAQRNAPIRKALKQQSK 896
Query: 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
DVQNEF+ RL++++TQ KEQG+NTELYYKNKD GETFNIVPTSAISGEGIPDLLLLL+QW
Sbjct: 897 DVQNEFDRRLMEVITQFKEQGLNTELYYKNKDMGETFNIVPTSAISGEGIPDLLLLLIQW 956
Query: 1003 TQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062
+QKTM+EKLTFRNE CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV GPIVTTI
Sbjct: 957 SQKTMIEKLTFRNE--CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV-----GPIVTTI 1009
Query: 1063 RALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKE 1122
RALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGTGLYVVG DDD+EDVKE
Sbjct: 1010 RALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTGLYVVGRDDDVEDVKE 1069
Query: 1123 EAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVM 1182
AMEDMKSVMSRIDK+GEGV VQASTLGSLEALLEFLKS AV IPVSGI IGPVHKKDVM
Sbjct: 1070 SAMEDMKSVMSRIDKTGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVM 1129
Query: 1183 RASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEE 1242
++SVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI NLKEE
Sbjct: 1130 KSSVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIQNLKEE 1189
Query: 1243 KKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIA 1302
KKREAADEAVFPCVL+I+P C+FNKKDPI+LGVDV+EGI KVGTP+C+PQ+++IDIGRIA
Sbjct: 1190 KKREAADEAVFPCVLEIIPECIFNKKDPIILGVDVLEGILKVGTPLCVPQKEYIDIGRIA 1249
Query: 1303 SIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANY 1362
SIE N K VD AKKGQK AIKI G+N+EEQQKM GRHFD ED+LVSHI+R+SID+LK NY
Sbjct: 1250 SIEFNKKSVDYAKKGQKVAIKIVGTNAEEQQKMHGRHFDNEDQLVSHITRRSIDILKVNY 1309
Query: 1363 RDDLSMDEWRLLVKLKNLFKIQ 1384
RDDLS+++WRL+VKLK LFKIQ
Sbjct: 1310 RDDLSIEDWRLVVKLKTLFKIQ 1331
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443744|ref|XP_004139637.1| PREDICTED: uncharacterized protein LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1312 bits (3395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1051 (73%), Positives = 874/1051 (83%), Gaps = 52/1051 (4%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAI-------PSPRDAAEKPAVAVKKAIPEQPLKSQDAV 766
+F DEE +SEPE +KK+ K+ + + A P+ +K +P Q +KSQD
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKALAAPS---QKGLPSQSIKSQDIE 739
Query: 767 TRKK-------------EPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
+KK E A + K DATP Q EENLRSPICCIMGHVDTGKTKLLDC
Sbjct: 740 NKKKQDGVEVADKGKRKEDAVRKKASISDATPVQQEENLRSPICCIMGHVDTGKTKLLDC 799
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A LKVPGLL+IDTPGHESFTNL
Sbjct: 800 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNL 859
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGSGLCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWK+ RNAPI
Sbjct: 860 RSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKSIRNAPI 919
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
+K +KQQ DVQNEFNMRL+QI+TQ KEQG+NTELYYKNK+ GETF+IVPTSA++GEGIP
Sbjct: 920 LKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIP 979
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
D+LLLLVQW QKTM +KLT+ +E+QCTVLEVKV+EGHGTTIDV+LVNGVLHEGDQIVVCG
Sbjct: 980 DMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCG 1039
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
+QGPIVT+IRALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGT L+VVGP
Sbjct: 1040 MQGPIVTSIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGP 1099
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
+DDLED+K+ AMEDMKSV+SRIDK+GEGVCVQASTLGSLEALLEFLKS AV IPVSGISI
Sbjct: 1100 EDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISI 1159
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF
Sbjct: 1160 GPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFK 1219
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AYI+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKDPIVLGVDV+EGIAKVGTPICIPQR
Sbjct: 1220 AYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQR 1279
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353
+FIDIGRIASIENNHKPVD AKKGQK AIKI G +SEEQQKM+GRHFD+EDELVSHISRK
Sbjct: 1280 EFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRK 1339
Query: 1354 SIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
SID+LKANYRDDLS DEWRL+VKLKNLFKIQ
Sbjct: 1340 SIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475431|ref|XP_004154455.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1051 (73%), Positives = 873/1051 (83%), Gaps = 52/1051 (4%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKXAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAI-------PSPRDAAEKPAVAVKKAIPEQPLKSQDAV 766
+F DEE +SEPE +KK+ K+ + + A P+ +K +P Q +KSQD
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKALAAPS---QKGLPSQSIKSQDIE 739
Query: 767 TRKK-------------EPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
+KK E A + K DATP Q EENLRSPICCIMGHVDTGKTKLLDC
Sbjct: 740 NKKKQDGVEVADKGKRKEDAVRKKASISDATPVQQEENLRSPICCIMGHVDTGKTKLLDC 799
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A LKVPGLL+IDTPGHESFTNL
Sbjct: 800 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNL 859
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGSGLCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWK+ RNAPI
Sbjct: 860 RSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKSIRNAPI 919
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
+K +KQQ DVQNEFNMRL+QI+TQ KEQG+NTELYY NK+ GETF+IVPTSA++GEGIP
Sbjct: 920 LKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYXNKEMGETFSIVPTSAVTGEGIP 979
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
D+LLLLVQW QKTM +KLT+ +E+QCTVLEVKV+EGHGTTIDV+LVNGVLHEGDQIVVCG
Sbjct: 980 DMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCG 1039
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
+QGPIVT+IRALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGT L+VVGP
Sbjct: 1040 MQGPIVTSIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGP 1099
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
+DDLED+K+ AMEDMKSV+SRIDK+GEGVCVQASTLGSLEALLEFLKS AV IPVSGISI
Sbjct: 1100 EDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISI 1159
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF
Sbjct: 1160 GPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFK 1219
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AYI+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKDPIVLGVDV+EGIAKVGTPICIPQR
Sbjct: 1220 AYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQR 1279
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353
+FIDIGRIASIENNHKPVD AKKGQK AIKI G +SEEQQKM+GRHFD+EDELVSHISRK
Sbjct: 1280 EFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRK 1339
Query: 1354 SIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
SID+LKANYRDDLS DEWRL+VKLKNLFKIQ
Sbjct: 1340 SIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357443693|ref|XP_003592124.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] gi|355481172|gb|AES62375.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1187 (67%), Positives = 929/1187 (78%), Gaps = 65/1187 (5%)
Query: 229 KDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKED------KDEDDEPITFTDKK 282
K +EDEPV+F+ KKK SK K +S+ ++ENDD +E+ +D+DDEPITF+ KK
Sbjct: 187 KSDEDEPVVFSGKKKPSKGWKKGASSLFSALDENDDGEEESKNEKVEDDDDEPITFSGKK 246
Query: 283 KKSNK----GGRMRSSAF---DLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTV 335
KKS+K G S A D + + +KDE+D FT KKK +K +
Sbjct: 247 KKSSKGSKKAGVSLSKAIPEEDSVSVSESAKGGDYEKDEDDVSFAFTGKKKSSKKKSGSA 306
Query: 336 SSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKK 395
++ V ++ S+ V+ ++ S D+ ++K E V TSKNKK
Sbjct: 307 AA---------KVSDEIEFGSESVNVVEAEKPSVDNG-------NISKSEEVVGTSKNKK 350
Query: 396 KKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQ---------EEKVQVQPPEPV--APP 444
K K+K S RT +EEDDL+K+LAELG+ PA ++KVQ P PV + P
Sbjct: 351 KNKKK----SGRTKEEEDDLDKLLAELGEAPATAQPAAAPPQQDDKVQ---PVPVVGSAP 403
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA----AAAAAEDKQQGKSEAVETKKND 500
A+ EK GE+E ESAA+KKKKKKKEKEKEKKAA +A + + K+EA+E KKND
Sbjct: 404 GASGEKEGEDETVESAATKKKKKKKEKEKEKKAAAAAAGSAPVVEAVEEKAEAIEPKKND 463
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
K+K +KK+ K VREMQE LARRKEAEE+KK+EEEE+ RKEEEER+R+EELERQAEEAK
Sbjct: 464 SKTKAADKKVPKHVREMQELLARRKEAEEKKKKEEEEKQRKEEEERRRIEELERQAEEAK 523
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRP 618
RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMR Q L G+ LP D SK+P
Sbjct: 524 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPGADTGGPSKKP 583
Query: 619 KYQTKK-KSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEK 677
YQTKK KS + NGA +K E+ E ET ++D E EKVEE ES+ +E+K
Sbjct: 584 IYQTKKGKSTNRNHNGAAAVK------TEENVEATETTADLDTEELEKVEEVESVQMEDK 637
Query: 678 PEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
E+ + EV +EDDD ++EWDAKSWDDVNLN +GAF DEE DSEPEP+VKKEIK+ I
Sbjct: 638 VELPE--VVEEVVDEDDDVEDEWDAKSWDDVNLNDRGAFADEEVDSEPEPIVKKEIKNGI 695
Query: 738 PSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATP-KQAEENLRSPI 796
PS A K A E + Q E K +P++ A P K +E NLRSPI
Sbjct: 696 PSKNAAGATNKPVTKPAAEETEDRKQ--AKVVVEDKKKKHDPQLSAVPSKPSEGNLRSPI 753
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+ATLKV
Sbjct: 754 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKV 813
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
PGLLVIDTPGHESF NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL
Sbjct: 814 PGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 873
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
NKVDRLYGWKTCRNAPI KA+ QQ+ DVQNEFNMR+ QIVTQ KEQG+NTELYYKNK+ G
Sbjct: 874 NKVDRLYGWKTCRNAPIRKAMTQQSKDVQNEFNMRVTQIVTQFKEQGLNTELYYKNKEMG 933
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDV 1036
ETF+IVPTSAISGEGIPD+LLLLVQWTQKTM EKLT+ E+QCTVLEVKVIEGHGTTIDV
Sbjct: 934 ETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDV 993
Query: 1037 VLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096
VLVNGVLHEGDQIVV G+QGPIVTTIRALLTPHPMKELRVKG+Y+HHK+IKAA GIKITA
Sbjct: 994 VLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITA 1053
Query: 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALL 1156
QGLEHAIAG LYVV PDDDLE +K+ A+ED++SV+SRID+SGEGVCVQASTLGSLEALL
Sbjct: 1054 QGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALL 1113
Query: 1157 EFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELG 1216
EFLK+ V IPVS I+IGPVHKKDVM+ASVMLEKK+EYATILAFDVKVTPEAR+LAEELG
Sbjct: 1114 EFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELG 1173
Query: 1217 VKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVD 1276
VKIFIADIIYHLFDQF AY++N+KEEKK+E+ADEAVFPCVLKILPNCVFNKKDPIVLGVD
Sbjct: 1174 VKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVD 1233
Query: 1277 VVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMF 1336
++EGI K+GTPICIP ++FIDIGRIASIENNHKPVD AKKGQK AIKI GSNSEEQQKMF
Sbjct: 1234 ILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMF 1293
Query: 1337 GRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
GRHF+I+DELVSHISR+SID+LK NYRDDL+M+EW+L+++ + F I
Sbjct: 1294 GRHFEIDDELVSHISRRSIDILKTNYRDDLTMEEWKLVIQREYSFLI 1340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842433|ref|XP_002889098.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] gi|297334939|gb|EFH65357.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1261 bits (3264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1177 (64%), Positives = 889/1177 (75%), Gaps = 72/1177 (6%)
Query: 254 TFDLLVN--ENDDVKEDKDEDDEP-ITFTDKKKKSNKGGR-MRSSAFDLLENEDEDDDEK 309
+F LL + E DD + + D+DDEP I+FT KK SNKG + SAFD L + D+EK
Sbjct: 100 SFALLADKEEEDDNESNGDKDDEPVISFTGKKHASNKGKKGFAVSAFDALGGDK--DEEK 157
Query: 310 KDKDEED-EPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQS 368
D DEE PIIF+ KKKK+ S K ++ LLDEE +D S + K
Sbjct: 158 VDGDEEQVYPIIFSGKKKKSSKSSKKTTN-KVALLDEEEG-------TDASTSRLGKNTM 209
Query: 369 GDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSE---------------------- 406
GD +E KG V + + E + ++
Sbjct: 210 GDEESLEITFSGKKKGSSVLASVGDDSVAYETSQAKTPDTKSVEVIETGKSKKKKKKNKS 269
Query: 407 -RTAQEEDDLEKILAELGQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
RTA+EE D + +L E G+ PA P EEKVQ QP PVAP + ADEK GEEE
Sbjct: 270 GRTAEEEYDFDNVLEEFGETPAAGRPASSTPGEEKVQAQPG-PVAPVENADEKEGEEETV 328
Query: 458 ESAASKKKKKKKEKEKEKK------AAAAAAAEDKQQ-GKSEAVETKKNDGKSKGPEKKM 510
++AA+KKKKKKKEKEKEKK ++ A E KQ+ +E ++ KK D K K EKK+
Sbjct: 329 KTAAAKKKKKKKEKEKEKKAAAAAATSSVEAKEGKQEESVTEPLQEKKKDAKGKAAEKKI 388
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
K V+EMQEALARR+EAEERKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEK
Sbjct: 389 PKHVKEMQEALARRQEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEK 448
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSA 627
LL+KKQEGKLLT KQK EA + EA +NQ LA G LP D + +SKRP Y KKKSA
Sbjct: 449 LLRKKQEGKLLTAKQKSEALKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSA 508
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
H + +ED +E KE + ++ +TL EV + +T KV+ ES +EK E AD +EN
Sbjct: 509 HQKGIDTYVQREDEVEPKENKADEPDTLGEVGLTDTGKVDLIESANTDEKSEPADVAQEN 568
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAA-EK 746
+EE+D EWDAKSWD V+LN+KG FDDEE EP+P+VKKE+K A+ D+ K
Sbjct: 569 GIEEDD-----EWDAKSWDTVDLNLKGEFDDEE--EEPQPVVKKELKDAVSKAHDSGMSK 621
Query: 747 PAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTG 806
P AV KA+ E + A K+ K P ++ ENLRS ICCIMGHVDTG
Sbjct: 622 PRTAVVKAMSE----VEHATPTKRAKKGKGLAP--SEFIEEGGENLRSIICCIMGHVDTG 675
Query: 807 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866
KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A +KVPGLLVIDTPG
Sbjct: 676 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKIKVPGLLVIDTPG 735
Query: 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926
HESFTNLRSRGS LCD+AILVVDIMH LEPQTIESL+LL+MRNTEFIVALNKVD LYGWK
Sbjct: 736 HESFTNLRSRGSSLCDLAILVVDIMHELEPQTIESLSLLRMRNTEFIVALNKVDLLYGWK 795
Query: 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSA 986
TC+NAPIVKA+KQQ+ DV NEFN+RL +I+TQ KEQG+NTELYYKNK+ GETF+IVPTSA
Sbjct: 796 TCKNAPIVKAMKQQSKDVTNEFNLRLTRIITQFKEQGLNTELYYKNKEMGETFSIVPTSA 855
Query: 987 ISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1046
SGEGIPDLLLLLVQW QKTM EKLT+ ++++CTVLEVKVIEGHGTTIDVVLVNG LHEG
Sbjct: 856 KSGEGIPDLLLLLVQWAQKTMFEKLTYVDKVKCTVLEVKVIEGHGTTIDVVLVNGELHEG 915
Query: 1047 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGT 1106
DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT
Sbjct: 916 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGT 975
Query: 1107 GLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKI 1166
L+VVGPDDD+E +KE AMEDM+SV+SRID SGEGV VQASTLGSLEALLEFLKS AV I
Sbjct: 976 SLHVVGPDDDIEAIKESAMEDMESVLSRIDNSGEGVYVQASTLGSLEALLEFLKSPAVNI 1035
Query: 1167 PVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIY 1226
PVSGI IGPVHKKD+M+A VMLEKKKEYATILAFDVKVT EARELA+E+GVKIF ADIIY
Sbjct: 1036 PVSGIGIGPVHKKDIMKAGVMLEKKKEYATILAFDVKVTTEARELADEMGVKIFCADIIY 1095
Query: 1227 HLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGT 1286
LFDQF AYI N+KEEK +E+A EAVFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GT
Sbjct: 1096 RLFDQFKAYIENIKEEKMKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGT 1155
Query: 1287 PICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDEL 1346
PIC+P R+FIDIGRIASIENNHKPVD A+KG++ AIKI SN EE QKMFGRHFD+EDEL
Sbjct: 1156 PICVPGREFIDIGRIASIENNHKPVDYAEKGEEVAIKIVASNREE-QKMFGRHFDMEDEL 1214
Query: 1347 VSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
VSHISR+SID+LKA+Y ++S ++W+LLVKLK +FKI
Sbjct: 1215 VSHISRRSIDILKADYMKEMSTEKWKLLVKLKRIFKI 1251
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574361|ref|XP_002528094.1| translation initiation factor if-2, putative [Ricinus communis] gi|223532483|gb|EEF34273.1| translation initiation factor if-2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1237 bits (3201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1423 (60%), Positives = 996/1423 (69%), Gaps = 199/1423 (13%)
Query: 1 MGRKKPSVRDEANLPAVAQGGGKSKKKAVVIDDDEYSIGTELTEEPQEEEAVNNNKKKKG 60
MGRKKP+ DE P G K K+ A IDDDEY+I T L+EE ++ V+ KKKG
Sbjct: 1 MGRKKPT--DEN--PQGGGGKSKKKQLA--IDDDEYNIDTGLSEELNDK--VSLTGKKKG 52
Query: 61 KKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGNNALSKSAFELLEGADK 120
KKGNQK+LQ +++ EE + + + +VF+GKKKSKGKKNG + S S F LL D
Sbjct: 53 KKGNQKSLQPDEEKEDVEE--DGEIQDLVFSGKKKSKGKKNGTASVFSASQFGLLRDEDN 110
Query: 121 DDD-----DDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESE 175
D++ D GDK S+ + + S K+ KK SGSLF+AAAFDA+D +E E
Sbjct: 111 DNNDDEETSDLLGDKNSEVEDEPVVSFTGKKKASKKPNKTSGSLFSAAAFDALDDDNEGE 170
Query: 176 VIDDDHSVEESDDDDDDVVEKSKKGGKKKS----GTTGFSASAFDLLDDEDEDVREDKDE 231
ID S E +DD D V+E + K K G++ F+A+ LDD
Sbjct: 171 EID--KSEEGNDDYDMPVIEFTGKKKSSKGAKKVGSSVFTAATLHGLDD----------- 217
Query: 232 EDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRM 291
N++V D+DEDD ITF+ KKK S K G
Sbjct: 218 ------------------------------NEEVNGDEDEDDGAITFSGKKKSSKKAGNK 247
Query: 292 RSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVED 351
SSA LLE E+++ E + +D + + +F+ +++ +
Sbjct: 248 FSSA--LLEEENDE--------EASATVKISDDIAEAEDDDGAAITFTG---KKKSSKKK 294
Query: 352 APVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQE 411
V DV+ +QQ+G ++E+ D KGE V +TSKNKKKKK K S RTAQE
Sbjct: 295 GKVNDDVA-----EQQTG---VLEAKD----KGEEVVETSKNKKKKKNK----SGRTAQE 338
Query: 412 EDDLEKILAELGQG--------PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK 463
E+DL+KILAELG+G PQEE QV E V P +A+ EK GEEEKEESAA+K
Sbjct: 339 EEDLDKILAELGEGLPTEKPSASTPQEESNQVHL-EQVPPENASGEKEGEEEKEESAAAK 397
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET--------KKNDGKSKGPEKKMSKQVR 515
KKKKKKEKEKEKKAAA AAA QGK E VE KK+D K K +KK+ K VR
Sbjct: 398 KKKKKKEKEKEKKAAAVAAAAAASQGKEEIVEQAKAETKEPKKSDAKGKAADKKVPKHVR 457
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
EMQEALARRKE EERK REEEE+ RKEEEER+R EELERQAEEA+RRKKE+EKEKLLKKK
Sbjct: 458 EMQEALARRKELEERKAREEEEKRRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKK 517
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAK-GIPLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
QEGKLLTGKQKEE RRLEAMRNQ LA GI +P DKE A TK+ H +
Sbjct: 518 QEGKLLTGKQKEEQRRLEAMRNQILANAGITIPAADKEGAP------TKRPKYHTK---- 567
Query: 635 VPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
+SK V K+EE + +E
Sbjct: 568 --------KSKPAANHHANDAAPV------KLEENNGMEEDED----------------- 596
Query: 695 DDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKA 754
DEEWDAKSWDDVNLNVKGAFDDEE DSEP+ KKE+K+A P+ R+A + P
Sbjct: 597 --DEEWDAKSWDDVNLNVKGAFDDEEIDSEPK---KKEVKNAAPASRNAGQTP------- 644
Query: 755 IPEQPLKSQDAVTRKKEP-------------AAKSKEPEVDATPKQAEENLRSPICCIMG 801
IP Q +KSQDA +K P AAK+K P DATPK++EENLRSPICCIMG
Sbjct: 645 IPSQSVKSQDAAIKKPHPEVDDSGKNRTKDAAAKNKTPPSDATPKESEENLRSPICCIMG 704
Query: 802 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861
HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLV
Sbjct: 705 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLV 764
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNK+DR
Sbjct: 765 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKMDR 824
Query: 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI 981
LYGWK CRNAPIVKA+KQQ+ DVQNEFN RL + M+ EL+
Sbjct: 825 LYGWKVCRNAPIVKAMKQQSKDVQNEFNRRLTGV--------MHIELFLN---------- 866
Query: 982 VPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041
GEGIPDLLLLLVQWTQKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG
Sbjct: 867 ------GGEGIPDLLLLLVQWTQKTMVEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNG 920
Query: 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH 1101
VLHEGDQIVVCG QGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKI+AQGLEH
Sbjct: 921 VLHEGDQIVVCGFQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKISAQGLEH 980
Query: 1102 AIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS 1161
A+AGTGLYVVGPDD+LED+KE AMED++SVM+RI+K EGV VQASTLGSLEALLEFLKS
Sbjct: 981 ALAGTGLYVVGPDDNLEDIKEAAMEDVRSVMNRIEKRDEGVYVQASTLGSLEALLEFLKS 1040
Query: 1162 DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFI 1221
AV IPVSGI IGPVHKKDVM+ASVMLEKKKEYATILAFDVKV+ E RELA++LGVKIF+
Sbjct: 1041 PAVGIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVSQETRELADDLGVKIFM 1100
Query: 1222 ADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGI 1281
ADIIYHLFDQF AYI+NLKEEKK+EAADEAVFPCVLKILPNC+FNKKDPIVLGV+V +GI
Sbjct: 1101 ADIIYHLFDQFKAYIDNLKEEKKKEAADEAVFPCVLKILPNCIFNKKDPIVLGVEVTDGI 1160
Query: 1282 AKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341
KVGTPIC+P +DFIDIGR+ASIENN+K VD AKKGQ AIK+ ++ E+QQKM+GRHFD
Sbjct: 1161 VKVGTPICVPDKDFIDIGRVASIENNYKAVDYAKKGQSVAIKLVNNSPEDQQKMYGRHFD 1220
Query: 1342 IEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
ED LVS ISR SIDVLKANYRDDLSMDEWRL+VKLKN+FKIQ
Sbjct: 1221 HEDLLVSRISRTSIDVLKANYRDDLSMDEWRLVVKLKNIFKIQ 1263
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6143896|gb|AAF04442.1|AC010718_11 putative translation initiation factor IF-2; 73082-68138 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1235 bits (3195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1158 (66%), Positives = 903/1158 (77%), Gaps = 54/1158 (4%)
Query: 270 DEDDEP-ITFTDKKKKSNKG----GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT-D 323
D+DDEP I+FT KK S KG +SAFD L ++D+D +E + +EE+ PI F+
Sbjct: 134 DKDDEPVISFTGKKHASKKGKKGGNSFAASAFDALGSDDDDTEEVHEDEEEESPITFSGK 193
Query: 324 KKKKTKSSKKTVSSFSEVLLDEE------------NVVED--APVLS-------DVSGAV 362
KKK +KSSKK +SF+ LLDEE N +ED +P ++
Sbjct: 194 KKKSSKSSKKNTNSFTADLLDEEEGTDASNSRDDENTIEDEESPEVTFSGKKKSSKKKGG 253
Query: 363 DTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAEL 422
GD S+ + K V +T K+KKKKK + S RT QEE+DL+K+LA L
Sbjct: 254 SVLASVGDDSVADETKTSDTKNVEVVETGKSKKKKKNNK---SGRTVQEEEDLDKLLAAL 310
Query: 423 GQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
G+ PA P EEK PEPVAP + A EK GEEE + KKKK+K++++K
Sbjct: 311 GETPAAERPASSTPVEEKAA--QPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKKA 368
Query: 475 KKAAAAAAAEDKQQGK-----SEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
AAAA ++ + ++ K +E ++ KK D K K EKK+ K VREMQEALARR+EAEE
Sbjct: 369 AAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEE 428
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEKLL+KK EGKLLT KQK EA
Sbjct: 429 RKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAKQKTEA 488
Query: 590 RRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKE 646
++ EA +NQ LA G LP D + +SKRP Y KKKS+ + ED +E KE
Sbjct: 489 QKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDTSVQGEDEVEPKE 548
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
+ ++Q+TL EV + +T KV+ E + +E AD +EN VEE+D++ +EWDAKSW
Sbjct: 549 NQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDEE--DEWDAKSWG 606
Query: 707 DVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDAV 766
V+LN+KG FDDEE E +P+VKKE+K AI D+ KP +A KA PE ++
Sbjct: 607 TVDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSG-KPLIAAVKATPEVEDATRTKR 663
Query: 767 TRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG 826
+ + A+K + + + EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG
Sbjct: 664 ATRAKDASKKGKGLAPSESIEGEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG 723
Query: 827 ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAIL 886
ITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGS LCD+AIL
Sbjct: 724 ITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAIL 783
Query: 887 VVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946
VVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWKTC+NAPIVKA+KQQN DV N
Sbjct: 784 VVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTCKNAPIVKAMKQQNKDVIN 843
Query: 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006
EFN+RL I+ + +EQG+NTELYYKNKD G+TF+IVPTSAISGEG+PDLLL LVQW QKT
Sbjct: 844 EFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSIVPTSAISGEGVPDLLLWLVQWAQKT 903
Query: 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066
MVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIVVCGLQGPIVTTIRALL
Sbjct: 904 MVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALL 963
Query: 1067 TPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAME 1126
TPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEHAIAGT L+VVGPDDD+E +KE AME
Sbjct: 964 TPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEHAIAGTALHVVGPDDDIEAIKESAME 1023
Query: 1127 DMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASV 1186
DM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS AVKIPVSGI IGPVHKKDVM+A V
Sbjct: 1024 DMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKSPAVKIPVSGIGIGPVHKKDVMKAGV 1083
Query: 1187 MLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE 1246
MLE+KKEYATILAFDVKVT EARELA+E+GVKIF ADIIYHLFD F AYI N+KEEKK+E
Sbjct: 1084 MLERKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYHLFDLFKAYIENIKEEKKKE 1143
Query: 1247 AADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIEN 1306
+ADEAVFPCVL+ILPNCVFNKKDPIVLGVDV+EGI K+GTPIC+P R+FIDIGRIASIEN
Sbjct: 1144 SADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGILKIGTPICVPGREFIDIGRIASIEN 1203
Query: 1307 NHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDL 1366
NHKPVD AKKG K AIKI GSN+EE QKMFGRHFD+EDELVSHISR+SID+LK+NYRD+L
Sbjct: 1204 NHKPVDYAKKGNKVAIKIVGSNAEE-QKMFGRHFDMEDELVSHISRRSIDILKSNYRDEL 1262
Query: 1367 SMDEWRLLVKLKNLFKIQ 1384
S++EW+L+VKLKN+FKIQ
Sbjct: 1263 SLEEWKLVVKLKNIFKIQ 1280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563275|ref|NP_177807.3| translation initiation factor eIF-5B [Arabidopsis thaliana] gi|332197770|gb|AEE35891.1| translation initiation factor eIF-5B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1171 (65%), Positives = 905/1171 (77%), Gaps = 66/1171 (5%)
Query: 270 DEDDEP-ITFTDKKKKSNKG----GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT-D 323
D+DDEP I+FT KK S KG +SAFD L ++D+D +E + +EE+ PI F+
Sbjct: 134 DKDDEPVISFTGKKHASKKGKKGGNSFAASAFDALGSDDDDTEEVHEDEEEESPITFSGK 193
Query: 324 KKKKTKSSKKTVSSFSEVLLDEE------------NVVED--APVLS-------DVSGAV 362
KKK +KSSKK +SF+ LLDEE N +ED +P ++
Sbjct: 194 KKKSSKSSKKNTNSFTADLLDEEEGTDASNSRDDENTIEDEESPEVTFSGKKKSSKKKGG 253
Query: 363 DTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAEL 422
GD S+ + K V +T K+KKKKK +S RT QEE+DL+K+LA L
Sbjct: 254 SVLASVGDDSVADETKTSDTKNVEVVETGKSKKKKKNN---KSGRTVQEEEDLDKLLAAL 310
Query: 423 GQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
G+ PA P EEK PEPVAP + A EK GEEE + KKKK+K++++K
Sbjct: 311 GETPAAERPASSTPVEEKAA--QPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKKA 368
Query: 475 KKAAAAAAAEDKQQGK-----SEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
AAAA ++ + ++ K +E ++ KK D K K EKK+ K VREMQEALARR+EAEE
Sbjct: 369 AAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEE 428
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEKLL+KK EGKLLT KQK EA
Sbjct: 429 RKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAKQKTEA 488
Query: 590 RRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKE 646
++ EA +NQ LA G LP D + +SKRP Y KKKS+ + ED +E KE
Sbjct: 489 QKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDTSVQGEDEVEPKE 548
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
+ ++Q+TL EV + +T KV+ E + +E AD +EN VEE+D++ +EWDAKSW
Sbjct: 549 NQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDEE--DEWDAKSWG 606
Query: 707 DVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDA---AEKPA----------VAVKK 753
V+LN+KG FDDEE E +P+VKKE+K AI D+ AEKP +A K
Sbjct: 607 TVDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVK 664
Query: 754 AIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
A PE ++ + + A+K + + + EENLRSPICCIMGHVDTGKTKLLDC
Sbjct: 665 ATPEVEDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSPICCIMGHVDTGKTKLLDC 724
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNL
Sbjct: 725 IRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNL 784
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWKTC+NAPI
Sbjct: 785 RSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTCKNAPI 844
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
VKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD G+TF+IVPTSAISGEG+P
Sbjct: 845 VKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSIVPTSAISGEGVP 904
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
DLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIVVCG
Sbjct: 905 DLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIVVCG 964
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
LQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEHAIAGT L+VVGP
Sbjct: 965 LQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEHAIAGTALHVVGP 1024
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
DDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS AVKIPVSGI I
Sbjct: 1025 DDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKSPAVKIPVSGIGI 1084
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+GVKIF ADIIYHLFD F
Sbjct: 1085 GPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYHLFDLFK 1144
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AYI N+KEEKK+E+ADEAVFPCVL+ILPNCVFNKKDPIVLGVDV+EGI K+GTPIC+P R
Sbjct: 1145 AYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGILKIGTPICVPGR 1204
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353
+FIDIGRIASIENNHKPVD AKKG K AIKI GSN+EE QKMFGRHFD+EDELVSHISR+
Sbjct: 1205 EFIDIGRIASIENNHKPVDYAKKGNKVAIKIVGSNAEE-QKMFGRHFDMEDELVSHISRR 1263
Query: 1354 SIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
SID+LK+NYRD+LS++EW+L+VKLKN+FKIQ
Sbjct: 1264 SIDILKSNYRDELSLEEWKLVVKLKNIFKIQ 1294
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|23452071|gb|AAN32916.1| translation initiation factor [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/811 (75%), Positives = 695/811 (85%), Gaps = 15/811 (1%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGA 634
GKLLTGKQKEEARRLEAMR Q L G+ LP GD A +K+P YQTKK KS NGA
Sbjct: 62 GKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDTGAPAKKPIYQTKKGKSTSRNYNGA 121
Query: 635 VPLKED-SIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEED 693
+K D SIE+KE T ++D E +KVEE S+ E+ E+ +A E+ VEE+D
Sbjct: 122 ASVKADESIEAKE-------TTADLDSEEPKKVEEVVSVQKEDIIELPEAVVEDRVEEDD 174
Query: 694 DDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKK 753
+D+ + A+SWDDVNLN KGAF DEE DSEPE +VKKEIK+ IP+ A V+ K
Sbjct: 175 VEDEWD--ARSWDDVNLNDKGAFADEEVDSEPELIVKKEIKTGIPAKNAGATSKTVS--K 230
Query: 754 AIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
+ E+ + A + K + + A K ++ NLRSPICCIMGHVDTGKTKLLDC
Sbjct: 231 HVAEEIEDRKQAKIGVEAKKKKQDQQQSAAFSKPSDANLRSPICCIMGHVDTGKTKLLDC 290
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIR+RT+ELKA+ATLKVPGLLVIDTPGHESF NL
Sbjct: 291 IRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFNNL 350
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGSGLCDIAILVVDIMHGLEPQT ESL+LLKMRNTEFIVALNKVDRLYGWKTCRNAPI
Sbjct: 351 RSRGSGLCDIAILVVDIMHGLEPQTKESLDLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 410
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
KA+ QQ+ DVQNEFNMRL QIVT+ KEQG+NT LYYKNK+ GETF+IVPTSAISGEGIP
Sbjct: 411 RKAMLQQSKDVQNEFNMRLDQIVTEFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIP 470
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
D+LLLLVQWTQKTM+EKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV G
Sbjct: 471 DMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVAG 530
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
+QGPIVT+IRALLTPHPMKELRVKG+Y+HHK+IKAA GIKITAQGLEHAIAG LYVV P
Sbjct: 531 MQGPIVTSIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKP 590
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
DDDLE +K A+ED++SV+SRID+SGEGVCVQASTLGSLEALLEFLK+ AV IPVS ISI
Sbjct: 591 DDDLEHIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPAVNIPVSAISI 650
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+ASVMLEKK+EY+TILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF
Sbjct: 651 GPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFK 710
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AY+ N+K+EKK+E+ADEAVFPCVLKILPNCVFNKKDPIVLGVD++EGI K+GTPICIP +
Sbjct: 711 AYMENIKDEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQ 770
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353
DFIDIGRIASIENNHKPVD AKKGQK AIKI GSNSEEQQKMFGRHF+I+DELVSHISR+
Sbjct: 771 DFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRR 830
Query: 1354 SIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
SIDVLK++YRD+LS +EW+L+VKLK+LFKIQ
Sbjct: 831 SIDVLKSDYRDELSNEEWKLVVKLKSLFKIQ 861
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | ||||||
| TAIR|locus:2030116 | 1294 | AT1G76810 [Arabidopsis thalian | 0.579 | 0.619 | 0.682 | 1.2e-311 | |
| TAIR|locus:2030126 | 1166 | AT1G76820 [Arabidopsis thalian | 0.572 | 0.680 | 0.656 | 1.3e-289 | |
| TAIR|locus:2030041 | 1191 | AT1G76720 "AT1G76720" [Arabido | 0.548 | 0.637 | 0.645 | 6.6e-272 | |
| TAIR|locus:2199562 | 1092 | AT1G21160 "AT1G21160" [Arabido | 0.573 | 0.727 | 0.575 | 1.8e-249 | |
| POMBASE|SPAC56F8.03 | 1079 | SPAC56F8.03 "translation initi | 0.447 | 0.573 | 0.565 | 2.4e-195 | |
| ASPGD|ASPL0000017318 | 1072 | AN4038 [Emericella nidulans (t | 0.429 | 0.555 | 0.577 | 4.6e-187 | |
| FB|FBgn0026259 | 1144 | eIF5B "eIF5B" [Drosophila mela | 0.432 | 0.523 | 0.548 | 6.9e-187 | |
| UNIPROTKB|F1N6Y7 | 1220 | EIF5B "Uncharacterized protein | 0.427 | 0.484 | 0.526 | 2.8e-180 | |
| SGD|S000000033 | 1002 | FUN12 "GTPase required for gen | 0.431 | 0.595 | 0.541 | 1.5e-177 | |
| CGD|CAL0001783 | 1017 | FUN12 [Candida albicans (taxid | 0.430 | 0.586 | 0.548 | 4e-177 |
| TAIR|locus:2030116 AT1G76810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2739 (969.2 bits), Expect = 1.2e-311, Sum P(5) = 1.2e-311
Identities = 562/823 (68%), Positives = 631/823 (76%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D + +SKRP Y KKKS+ +
Sbjct: 477 GKLLTAKQKTEAQKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDT 536
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
TL EV + +T KV+ E + +E A
Sbjct: 537 SVQGEDEVEPKENQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDE 596
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXX- 753
V+LN+KG FDDEE E +P+VKKE+K AI D
Sbjct: 597 EDEWDAKSWGT--VDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSEPEAEKPTAKP 652
Query: 754 XXXXQPL----KS----QDAV-TRXXXXXXXXXXXXVDATPKQA---EENLRSPICCIMG 801
+PL K+ +DA T+ P ++ EENLRSPICCIMG
Sbjct: 653 AGTGKPLIAAVKATPEVEDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSPICCIMG 712
Query: 802 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861
HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLV
Sbjct: 713 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLV 772
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
IDTPGHESFTNLRSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDR
Sbjct: 773 IDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDR 832
Query: 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI 981
LYGWKTC+NAPIVKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD G+TF+I
Sbjct: 833 LYGWKTCKNAPIVKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSI 892
Query: 982 VPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041
VPTSAISGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG
Sbjct: 893 VPTSAISGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNG 952
Query: 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH 1101
LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEH
Sbjct: 953 ELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEH 1012
Query: 1102 AIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS 1161
AIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS
Sbjct: 1013 AIAGTALHVVGPDDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKS 1072
Query: 1162 DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFI 1221
AVKIPVSGI IGPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+GVKIF
Sbjct: 1073 PAVKIPVSGIGIGPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEMGVKIFC 1132
Query: 1222 ADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGI 1281
ADIIYHLFD F AYI N+ VFPCVL+ILPNCVFNKKDPIVLGVDV+EGI
Sbjct: 1133 ADIIYHLFDLFKAYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGI 1192
Query: 1282 AKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFD 1341
K+GTPIC+P R+FIDIGRIASIENNHKPVD SN+EEQ KMFGRHFD
Sbjct: 1193 LKIGTPICVPGREFIDIGRIASIENNHKPVDYAKKGNKVAIKIVGSNAEEQ-KMFGRHFD 1251
Query: 1342 IEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
+EDELVSHISR+SID+LK+NYRD+LS++EW+L+VKLKN+FKIQ
Sbjct: 1252 MEDELVSHISRRSIDILKSNYRDELSLEEWKLVVKLKNIFKIQ 1294
|
|
| TAIR|locus:2030126 AT1G76820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2605 (922.1 bits), Expect = 1.3e-289, Sum P(4) = 1.3e-289
Identities = 534/813 (65%), Positives = 609/813 (74%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKE---AASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D + +SKRP Y KKKS+ + N
Sbjct: 366 GKLLTAKQKSEAQKREAFKNQLLAAGGGLPVADDDDDATSSKRPIYANKKKSSRQKGNDT 425
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
L EV +TEKV+ ES + EK
Sbjct: 426 -----SVQVEGEVEPKENHALGEVGSADTEKVDLLESANLGEK----SGGPADVAQENGV 476
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXXX 754
V+L ++G FDD+E E + +VKKE K+
Sbjct: 477 EEDDEWDAKSWDNVDLKIRGDFDDKE--EEAQHVVKKEFKAHYSDHETEKPTAKPAGMSK 534
Query: 755 XXXQPLKS----QDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
+K+ +DA T+ + ++ E LRS ICCIMGHVD+GKTKL
Sbjct: 535 LETAAVKAISEVEDAATQTKRAKKGKCLAPNEFI-EEGGEKLRSIICCIMGHVDSGKTKL 593
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870
LDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERTRELKA+A LKVPGLLVIDTPGHESF
Sbjct: 594 LDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERTRELKADAKLKVPGLLVIDTPGHESF 653
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRGS LCD+AILVVDI HGL+PQTIESLNLL+MRNTEFI+ALNKVDRLYGWKTC+N
Sbjct: 654 TNLRSRGSSLCDLAILVVDITHGLQPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTCKN 713
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
APIVKA+KQQN DV NEFN+RL +I+ + +EQG+NTELYYKNKD GETF+IVPTSAISGE
Sbjct: 714 APIVKAMKQQNKDVINEFNLRLKKIINEFQEQGLNTELYYKNKDMGETFSIVPTSAISGE 773
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIV
Sbjct: 774 GVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIV 833
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT L+V
Sbjct: 834 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGTSLHV 893
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSG 1170
VGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ STLGSLEALLEFLK+ AV IPVSG
Sbjct: 894 VGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQTSTLGSLEALLEFLKTPAVNIPVSG 953
Query: 1171 ISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFD 1230
I IGPVHKKD+M+A VMLEKKKEYATILAFDVKVT EARELA+E+GVKIF ADIIY LF+
Sbjct: 954 IGIGPVHKKDIMKAGVMLEKKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYQLFN 1013
Query: 1231 QFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI 1290
QF YI N+ VFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GTPIC+
Sbjct: 1014 QFQVYIENIKEEKKKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGTPICV 1073
Query: 1291 PQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHI 1350
P R+F DIGRIASIENNHKPVD SN EEQ KMFGRHFD+EDELVSHI
Sbjct: 1074 PGREFTDIGRIASIENNHKPVDYAEKGDEVAIKIVASNREEQ-KMFGRHFDMEDELVSHI 1132
Query: 1351 SRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
SR+SID+LKA+Y ++S ++W+LL+KLK +FKI
Sbjct: 1133 SRRSIDILKADYMKEMSTEKWKLLLKLKRIFKI 1165
|
|
| TAIR|locus:2030041 AT1G76720 "AT1G76720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2416 (855.5 bits), Expect = 6.6e-272, Sum P(5) = 6.6e-272
Identities = 512/793 (64%), Positives = 577/793 (72%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDK---EAASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D +SKRP Y KKK + + N
Sbjct: 420 GKLLTAKQKTEAQKREAFKNQLLAAGRGLPVADDVGDATSSKRPIYANKKKPSRQKGNDT 479
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
TL EV +TEKV+ ES EK A
Sbjct: 480 ---SVQVEDEVEPQENHAATLGEVGSEDTEKVDLLESANTGEKSGPADVAQENGVEEDDE 536
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXXX 754
N+++K DD+E E +P+VKKE+K+
Sbjct: 537 WDAKSWD-------NVDLK--IDDKE--EEAQPVVKKELKAHDSDHETEKPTAKPAGMSK 585
Query: 755 XXXQPLKS----QDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
+K+ +DA T+ + K+ ENLRS ICCIMGHVD+GKTKL
Sbjct: 586 LTTGAVKAISEVEDAATQTKRAKKGKCLAPSEFI-KEGGENLRSIICCIMGHVDSGKTKL 644
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870
LDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERTRELKA+A LKVPGLLVIDTPGHESF
Sbjct: 645 LDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERTRELKADAKLKVPGLLVIDTPGHESF 704
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRGS LCD+AILVVDI HGLEPQTIESLNLL+MRNTEFI+ALNKVDRLYGWKTC+N
Sbjct: 705 TNLRSRGSSLCDLAILVVDIKHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTCKN 764
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
APIVKA+KQQN DV NEFN+RL I+TQ KEQG+NTE+YYKNK+ GETF+IVPTSA SGE
Sbjct: 765 APIVKAMKQQNKDVTNEFNIRLTDIITQFKEQGLNTEIYYKNKEMGETFSIVPTSAKSGE 824
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIV
Sbjct: 825 GVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIV 884
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT L+V
Sbjct: 885 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGTSLHV 944
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVS- 1169
VGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ STLGSLEALLEFLK+ AV IPVS
Sbjct: 945 VGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQTSTLGSLEALLEFLKTPAVNIPVSE 1004
Query: 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLF 1229
G + G D ++KEYATILAFDVKVT EARELA+E+GVKIF ADIIY LF
Sbjct: 1005 GYNEG---WSDA-------REEKEYATILAFDVKVTTEARELADEMGVKIFCADIIYQLF 1054
Query: 1230 DQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC 1289
+QF YI N+ VFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GTPIC
Sbjct: 1055 NQFQVYIENIKEEKKKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGTPIC 1114
Query: 1290 IPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSH 1349
+P R+F DIGRIASIENNHKPVD SN EEQ KMFGRHFD+EDELVSH
Sbjct: 1115 VPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKIVASNREEQ-KMFGRHFDMEDELVSH 1173
Query: 1350 ISRKSIDVLKANY 1362
ISR+SID+LKA+Y
Sbjct: 1174 ISRRSIDILKADY 1186
|
|
| TAIR|locus:2199562 AT1G21160 "AT1G21160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2272 (804.8 bits), Expect = 1.8e-249, Sum P(5) = 1.8e-249
Identities = 474/824 (57%), Positives = 579/824 (70%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA-ASKRPKYQTKKKSAHHQAN--GA 634
G +LT KQK +A + EA R + L L DK +SKRP Y K K A +AN +
Sbjct: 282 GLILTAKQKRDAAKNEAFRKRVLTDAGSLLVADKNGDSSKRPIYGNKNKLACKKANDPAS 341
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
V TL ++ E +V ES+ EE E
Sbjct: 342 VQAKGDGETKENHAADEPCTLPDLVSVEDRRVGIIESVDTEETHE----------SVDVS 391
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKS-------AIP-SPRDXXXX 746
N +KG DDEE +P+P+ KK +K ++P + R
Sbjct: 392 QENGDEEDVWDAKTNFTIKGDSDDEE--EKPQPVFKKGLKDTASKAHDSVPGADRPTVKP 449
Query: 747 XXXXXXXXXXXQPLKSQDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTG 806
+ + D TR ++ K+ EENLRSPICCIMGHVD+G
Sbjct: 450 GGSGKPKTAAKKAMPKVDDTTRPKDTSKKDEGLVLNELAKEVEENLRSPICCIMGHVDSG 509
Query: 807 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866
KTKLLDCIRGTNVQEGEAGGITQQIGAT+FPAENIRERT+EL+ANA LKVPG+LVIDTPG
Sbjct: 510 KTKLLDCIRGTNVQEGEAGGITQQIGATFFPAENIRERTKELQANAKLKVPGILVIDTPG 569
Query: 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926
HESFTNLRSRGS LCD+AILVVDIM GLEPQTIESLNLL+ RN +FI+ALNKVDRLYGW+
Sbjct: 570 HESFTNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRNVKFIIALNKVDRLYGWE 629
Query: 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSA 986
+NAPI K + QQ DV EF MRL ++ Q +EQG+N+ LYYKN++ GET +I+P SA
Sbjct: 630 KSKNAPIRKTMMQQTGDVVKEFKMRLNRVQNQFQEQGLNSMLYYKNREMGETISILPASA 689
Query: 987 ISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1046
ISGEGIPDLLL LVQW QKTMVEKLT+ +++QCTVLEVKVIEGHG T+DVVLVNGVL EG
Sbjct: 690 ISGEGIPDLLLFLVQWAQKTMVEKLTYVDKVQCTVLEVKVIEGHGITVDVVLVNGVLREG 749
Query: 1047 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGT 1106
DQIVVCG QGPIVTTIR+LLTP+PM E+RV GTY+ H+++KAAQGIKI AQGLEHAIAGT
Sbjct: 750 DQIVVCGSQGPIVTTIRSLLTPYPMNEMRVTGTYMPHREVKAAQGIKIAAQGLEHAIAGT 809
Query: 1107 GLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKI 1166
L+V+GP++D+E+ K+ AMED++SVM+RIDKSGEGV VQASTLGSLEALLEFLKS VKI
Sbjct: 810 ALHVIGPNEDMEEAKKNAMEDIESVMNRIDKSGEGVYVQASTLGSLEALLEFLKSSDVKI 869
Query: 1167 PVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIY 1226
PVSGI IGPVHKKD+M+A VMLEKKKE+ATILAFDVK++ EARELA+++GVKIF D IY
Sbjct: 870 PVSGIGIGPVHKKDIMKAGVMLEKKKEFATILAFDVKISAEARELADKMGVKIFCDDTIY 929
Query: 1227 HLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGT 1286
LFD+F +YI + VFPC+L+ILPN ++N++DPI+LGV V +GI KVGT
Sbjct: 930 CLFDKFKSYIEGIKEEKKKETACEAVFPCILQILPNHIYNQRDPIILGVKVNDGILKVGT 989
Query: 1287 PICIPQRD-----FIDIGRIASIENNHK-PVDTXXXXXXXXXXXXXSNSEEQQKMFGRHF 1340
PICI +R F+DIGR++SI+NN+ PVD SN EEQ KMFGRHF
Sbjct: 990 PICIVKRIENVRVFMDIGRVSSIKNNNNMPVDYARKGQEVAIKIIASNPEEQ-KMFGRHF 1048
Query: 1341 DIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1384
++D L+SHIS +S+DV++ NY ++LS DE L+++LK +FKIQ
Sbjct: 1049 GVDDRLISHISSRSVDVIRTNYWNELSNDEKDLVLRLKRIFKIQ 1092
|
|
| POMBASE|SPAC56F8.03 SPAC56F8.03 "translation initiation factor IF2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1801 (639.0 bits), Expect = 2.4e-195, Sum P(4) = 2.4e-195
Identities = 362/640 (56%), Positives = 462/640 (72%)
Query: 760 LKSQDAVTRXXXXXXXXXXXXVDATPKQA-------EENLRSPICCIMGHVDTGKTKLLD 812
+KS DAV VD P+ A E +LRSPICCI+GHVDTGKTKLLD
Sbjct: 444 IKS-DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVDTGKTKLLD 502
Query: 813 CIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK--VPGLLVIDTPGHESF 870
+R +NVQEGEAGGITQQIGATYFP E+I+++T+ + L+ +PGLL+IDTPGHESF
Sbjct: 503 NLRRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESF 562
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T F+VALNKVDRLYGW + ++
Sbjct: 563 TNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRLYGWHSIKD 622
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
I ++ +Q +Q EF R+ I+ QL EQG+N LY++NK+ G ++VPTSA SGE
Sbjct: 623 NAIQDSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFENKNLGRYVSLVPTSAQSGE 682
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDL+ LL+ TQ M +++ + L+CTVLEVKVIEG G TIDV+L NGVLHEGD+IV
Sbjct: 683 GVPDLVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLGATIDVILSNGVLHEGDRIV 742
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
+CG+ GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G+KI A LE A+AG+ L V
Sbjct: 743 LCGMGGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLV 802
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSG 1170
VGPDDD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK +KIPV+
Sbjct: 803 VGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVAS 860
Query: 1171 ISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFD 1230
++IGPV+KKDVMR + MLEK KEYA +L FDVKV +A +LAE+LGVKIF A++IYHLFD
Sbjct: 861 VNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFD 920
Query: 1231 QFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC- 1289
FTA+ + VFPCVLK + FNK+DPI+LGVDVVEG+ ++ TPI
Sbjct: 921 AFTAHQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGVDVVEGVLRINTPIVA 978
Query: 1290 ---IPQRD--FIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIED 1344
+P + I++GR+AS+E NHKPVD S Q +FGR D
Sbjct: 979 VKQLPNGEPQIIELGRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGRQVTESD 1038
Query: 1345 ELVSHISRKSIDVLK-ANYRDDLSMDEWRLLVKLKNLFKI 1383
L SHI+R+SID LK +RD++S DEW+L+++LK LF I
Sbjct: 1039 ALYSHITRQSIDSLKDPAFRDEVSRDEWQLIIQLKKLFGI 1078
|
|
| ASPGD|ASPL0000017318 AN4038 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1753 (622.1 bits), Expect = 4.6e-187, Sum P(2) = 4.6e-187
Identities = 353/611 (57%), Positives = 441/611 (72%)
Query: 782 DATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI 841
+A ++++NLRSPICCI+GHVDTGKTKLLD IR TNVQEGEAGGITQQIGATYFP + +
Sbjct: 468 EALAARSKDNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVDAL 527
Query: 842 RERTRELKANATL--KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
R++T + + + K+PGLLVIDTPGHESF+NLRSRGS LC+IAILVVDIMHGLEPQT+
Sbjct: 528 RQKTAVVNKDGSFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTL 587
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL 959
ES+ LL+ R T FIVALNK+DRLYGWK N +++ Q+ VQNEF RL +
Sbjct: 588 ESMRLLRERRTPFIVALNKIDRLYGWKKIDNNGFQESLAMQSKGVQNEFRTRLERTKLLF 647
Query: 960 KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1019
EQG N+EL+Y+NK ++VPTSA +GEG+PD+L LL TQ+ M L + +E++C
Sbjct: 648 AEQGFNSELFYENKSMARNVSLVPTSAHTGEGVPDMLKLLTTLTQERMTNSLMYLSEVEC 707
Query: 1020 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079
TVLEVKVIEG GTTIDVVL NG+L EGD+IV+CGL GPI T IRALLTP P+KELR+K
Sbjct: 708 TVLEVKVIEGLGTTIDVVLSNGILREGDRIVLCGLNGPIATNIRALLTPAPLKELRLKSQ 767
Query: 1080 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSG 1139
Y+H+K++KAA G+KI A LEHAIAG+ L VVGPDDD ED++EE M D+++++S++ K
Sbjct: 768 YVHNKEVKAALGVKIAANDLEHAIAGSRLMVVGPDDDEEDIEEEVMSDLENLLSKVSKDQ 827
Query: 1140 EGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILA 1199
GV VQASTLGSLEALLEFL+ KIPV+ ISIGPV+K+DVM MLEK KEYA +L
Sbjct: 828 RGVSVQASTLGSLEALLEFLRVS--KIPVANISIGPVYKRDVMMCGTMLEKAKEYAVMLC 885
Query: 1200 FDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 1259
FDVKV EA+ A+++GVKIF ADIIYHLFD FT ++ L VFPCVLK
Sbjct: 886 FDVKVDKEAQAYADDVGVKIFTADIIYHLFDDFTKHMAELTERKKEEAKLLAVFPCVLKT 945
Query: 1260 LPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQ-------RDFIDIGRIASIENNHKPVD 1312
+ VFNKKDPIV+GVDVVEG ++ TPI + ++ +++GR+A IE +HKPV+
Sbjct: 946 V--AVFNKKDPIVIGVDVVEGSLRLHTPIAAIKTNATTGAKEVVELGRVAGIERDHKPVN 1003
Query: 1313 TXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWR 1372
+ Q M+GR + D L S ISR SID LK YR D+SMDEW
Sbjct: 1004 VVKRGQPSVAVKIEGAN---QPMYGRQLEESDTLYSQISRASIDTLKEFYRSDVSMDEWA 1060
Query: 1373 LLVKLKNLFKI 1383
L+ KLK +F I
Sbjct: 1061 LIKKLKPVFDI 1071
|
|
| FB|FBgn0026259 eIF5B "eIF5B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1656 (588.0 bits), Expect = 6.9e-187, Sum P(5) = 6.9e-187
Identities = 331/604 (54%), Positives = 425/604 (70%)
Query: 782 DATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI 841
+A K++ + LR+ + C++GHVDTGKTK+LD +R T+VQ+ EAGGITQQIGAT P E I
Sbjct: 543 EAEKKRSTDELRAGVVCVLGHVDTGKTKILDKLRRTHVQDSEAGGITQQIGATNVPIEAI 602
Query: 842 RERTRELKANATL--KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+E+T+ +KA A ++PGLL+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTI
Sbjct: 603 KEQTKYVKAAAGFEHRLPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 662
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL 959
ES+ LLK + FIVALNK+DRLY WK + +K+Q ++ Q EF R ++ Q
Sbjct: 663 ESIQLLKKKKCPFIVALNKIDRLYDWKQLARRDVRDVLKEQQSNTQLEFQQRTKDVILQF 722
Query: 960 KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1019
EQG+N L+Y+N D ++VPTSAISGEG+ +LL ++ + Q + ++L + ELQ
Sbjct: 723 AEQGLNAALFYENTDPKTYISLVPTSAISGEGMGNLLFMIADFCQNMLAKRLMYSEELQA 782
Query: 1020 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079
TVLEVK + G GTTID +L+NG L EG +VV G GPIVT IR+LL P PMKELRVK
Sbjct: 783 TVLEVKALPGLGTTIDAILINGKLREGQTMVVAGTDGPIVTQIRSLLMPQPMKELRVKNA 842
Query: 1080 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSG 1139
Y+ +K++KAAQG+KI A+ LE AIAG L + D++E EE ++KS +S I +
Sbjct: 843 YVEYKEVKAAQGVKIAAKDLEKAIAGINLLIAHKPDEVEICTEEVARELKSALSHIKLAQ 902
Query: 1140 EGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILA 1199
GV VQASTLGSLEALLEFL++ KIP S I IGPV K+DVM+AS MLE + +YATILA
Sbjct: 903 TGVHVQASTLGSLEALLEFLRTS--KIPYSAIRIGPVVKRDVMKASTMLEHEAQYATILA 960
Query: 1200 FDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 1259
FDVK+ EA+E+A+ LGVKIF ADIIYHLFD+FTAY L VFPC L+I
Sbjct: 961 FDVKIEREAQEMADSLGVKIFQADIIYHLFDKFTAYREELKQKKREEFRSVAVFPCKLRI 1020
Query: 1260 LPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXX 1319
LP VFN +DPIV+GV V GI KVGTPIC+P ++F+DIG + SIE+NHK ++
Sbjct: 1021 LPQFVFNSRDPIVMGVMVENGIVKVGTPICVPSKEFVDIGIVTSIESNHKQIEFARKGQE 1080
Query: 1320 XXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1379
E KMFGRHF+ +D L+S ISR+SID K +RDDL +W L+V+LK
Sbjct: 1081 ICVKIDPIPGESP-KMFGRHFEADDMLISKISRQSIDACKDYFRDDLIKADWALMVELKK 1139
Query: 1380 LFKI 1383
LF+I
Sbjct: 1140 LFEI 1143
|
|
| UNIPROTKB|F1N6Y7 EIF5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1597 (567.2 bits), Expect = 2.8e-180, Sum P(5) = 2.8e-180
Identities = 314/596 (52%), Positives = 422/596 (70%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTRDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLICLLVELTQTMLSKRLAQCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEVPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXS 1327
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEVNHKQVDVAKKGQEVCVKIEPI 1164
Query: 1328 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383
E KM+GRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PGESP-KMYGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
|
| SGD|S000000033 FUN12 "GTPase required for general translation initiation" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 333/615 (54%), Positives = 437/615 (71%)
Query: 784 TPKQAEEN---LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN 840
TP A N LRSPICCI+GHVDTGKTKLLD IR TNVQ GEAGGITQQIGATYFP +
Sbjct: 392 TPSSASPNKKDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDA 451
Query: 841 IRERTRELKA--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
I+ +T+ + T VPGLLVIDTPGHESF+NLRSRGS LC+IAILV+DIMHGLE QT
Sbjct: 452 IKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQT 511
Query: 899 IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQ 958
IES+ LL+ R F+VALNK+DRLY WK N + +Q+ VQ EF R +I +
Sbjct: 512 IESIKLLRDRKAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEEFQSRYSKIQLE 571
Query: 959 LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018
L EQG+N+ELY++NK+ + +IVPTSA++GEG+PDLL LL++ TQK M ++L + + ++
Sbjct: 572 LAEQGLNSELYFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVE 631
Query: 1019 CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078
T+LEVKV+EG GTTIDV+L NG L EGD+IV+CG+ GPIVT IRALLTP P++ELR+K
Sbjct: 632 ATILEVKVVEGFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKS 691
Query: 1079 TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKS 1138
Y+HHK++KAA G+KI A LE A++G+ L VVGP+DD +++ ++ M+D+ ++ +D +
Sbjct: 692 EYVHHKEVKAALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTT 751
Query: 1139 GEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATIL 1198
G+GV VQASTLGSLEALL+FLK +KIPV I +GPV+K+DVM+AS MLEK EYA +L
Sbjct: 752 GKGVVVQASTLGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVML 809
Query: 1199 AFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLK 1258
FDVKV EA + AE+ G+KIF AD+IYHLFD FTAY L +FPCVL+
Sbjct: 810 CFDVKVDKEAEQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQ 869
Query: 1259 ILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI----P---QRDFIDIGRIASIENNHKPV 1311
L + NK+ P+++GVDV+EG +VGTPIC P +R + +G++ S+E NH+PV
Sbjct: 870 TLQ--IINKRGPMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPV 927
Query: 1312 -DTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKAN-YRDDLSMD 1369
+ + QQ ++GRH D D L S +SR+SID LK +RD ++
Sbjct: 928 QEVKKGQTAAGVAVRLEDPSGQQPIWGRHVDENDTLYSLVSRRSIDTLKDKAFRDQVARS 987
Query: 1370 EWRLLVKLKNLFKIQ 1384
+W LL KLK +F I+
Sbjct: 988 DWLLLKKLKVVFGIE 1002
|
|
| CGD|CAL0001783 FUN12 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
Identities = 336/613 (54%), Positives = 433/613 (70%)
Query: 783 ATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR 842
A+P +E++LRSPICCI+GHVDTGKTKLLD IR TNVQ GEAGGITQQIGATYFP + I+
Sbjct: 411 ASP--SEKDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPVDAIK 468
Query: 843 ERTRELKA--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
++T + T VPGLL+IDTPGHESFTNLRSRGS LC+IAILV+DIMHGLE QT+E
Sbjct: 469 QKTAVMAKYEKQTFDVPGLLIIDTPGHESFTNLRSRGSSLCNIAILVIDIMHGLEQQTLE 528
Query: 901 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
S+ LL+ R F+VALNK+DRLY WK N + +Q VQ EF R QI L
Sbjct: 529 SIRLLRDRKAPFVVALNKIDRLYDWKEIPNNSFRDSFAKQTKSVQAEFENRYEQIKLALA 588
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCT 1020
EQG+N+ELY++NK+ + +IVPTSA++GEG+PDLL LL++ TQK M ++L + +++ T
Sbjct: 589 EQGLNSELYFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSKVAAT 648
Query: 1021 VLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTY 1080
+LEVKV+EG G TIDVVL NG+L EGD++V+CGL GPI T IRALLTP P +ELR+K Y
Sbjct: 649 ILEVKVVEGFGYTIDVVLSNGILREGDRVVLCGLNGPIATNIRALLTPPPSRELRIKSEY 708
Query: 1081 LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGE 1140
+HHK++KAA G+KI A LE A+AG+ L VVG DDD +++ +E M+D+ ++ +D SG+
Sbjct: 709 VHHKEVKAALGVKIAANDLEKAVAGSRLLVVGEDDDEDELMDEVMDDLTGLLDSVDTSGK 768
Query: 1141 GVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1200
GV VQASTLGSLEALL+FLK +KIPV I +GPV+K+DVM+AS MLE+ E A +L F
Sbjct: 769 GVVVQASTLGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLERAPELAVMLCF 826
Query: 1201 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKIL 1260
DVKV EA + A+E +KIF ADIIYHLFD FTAY L VFPCVLK +
Sbjct: 827 DVKVDKEAEQYADEQNIKIFNADIIYHLFDSFTAYQAKLLEARRKEFMEYAVFPCVLKTI 886
Query: 1261 PNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRD-------FIDIGRIASIENNHKPVDT 1313
+ NK++P+++GVDVVEG +VGTPIC + D + +G++ S+E NHKP+++
Sbjct: 887 Q--IINKRNPMIIGVDVVEGAVRVGTPICAVRTDPTTKQPNIMVLGKVVSLEVNHKPLES 944
Query: 1314 XXXXXXXXXXXXX-SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK-ANYRDDLSMDEW 1371
N Q +GRH D D L S ISRKSID LK +RD +S D+W
Sbjct: 945 VKKGQTAAGVAMRLDNPSSAQPTWGRHVDETDNLYSLISRKSIDTLKDPAFRDSVSRDDW 1004
Query: 1372 RLLVKLKNLFKIQ 1384
L+ KLK +F I+
Sbjct: 1005 LLIKKLKPVFDIK 1017
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1384 | |||
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 0.0 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-144 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 1e-139 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 1e-129 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 2e-81 | |
| cd03703 | 110 | cd03703, aeIF5B_II, aeIF5B_II: This family represe | 1e-53 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 2e-43 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 3e-43 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 3e-40 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 3e-39 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-27 | |
| pfam11987 | 109 | pfam11987, IF-2, Translation-initiation factor 2 | 7e-22 | |
| cd03701 | 95 | cd03701, IF2_IF5B_II, IF2_IF5B_II: This family rep | 1e-21 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-15 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-15 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 1e-14 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 9e-14 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-12 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 4e-12 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 2e-11 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 2e-10 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 2e-10 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 3e-10 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 4e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-10 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 4e-09 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 2e-08 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 2e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-08 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 6e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-07 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 4e-07 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 5e-07 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 6e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-07 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 8e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-06 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-06 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-06 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| cd04163 | 168 | cd04163, Era, E | 3e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-06 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 4e-06 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 4e-06 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 5e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 6e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 6e-06 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 6e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 7e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 8e-06 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 8e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 1e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-05 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 1e-05 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 1e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-05 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 2e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 2e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-05 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 2e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 3e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 3e-05 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 3e-05 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 3e-05 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 4e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-05 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 4e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 4e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-05 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 6e-05 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 6e-05 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 7e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 8e-05 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 8e-05 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 9e-05 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 9e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-04 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 1e-04 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 1e-04 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-04 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 1e-04 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 1e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 2e-04 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 2e-04 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-04 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-04 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 3e-04 | |
| PRK05703 | 424 | PRK05703, flhF, flagellar biosynthesis regulator F | 3e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 3e-04 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 3e-04 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 3e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 4e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-04 | |
| PRK13808 | 333 | PRK13808, PRK13808, adenylate kinase; Provisional | 5e-04 | |
| PTZ00266 | 1021 | PTZ00266, PTZ00266, NIMA-related protein kinase; P | 6e-04 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 6e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 6e-04 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 6e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 7e-04 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 7e-04 | |
| COG5258 | 527 | COG5258, GTPBP1, GTPase [General function predicti | 7e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 8e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 9e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.001 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.001 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.001 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.001 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.001 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 0.002 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.002 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.002 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.002 | |
| cd03696 | 83 | cd03696, selB_II, selB_II: this subfamily represen | 0.002 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| pfam12569 | 516 | pfam12569, NARP1, NMDA receptor-regulated protein | 0.002 | |
| pfam06375 | 561 | pfam06375, BLVR, Bovine leukaemia virus receptor ( | 0.002 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.002 | |
| pfam14303 | 147 | pfam14303, NAM-associated, No apical meristem-asso | 0.002 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.003 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.003 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 0.003 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.003 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| pfam04935 | 206 | pfam04935, SURF6, Surfeit locus protein 6 | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.004 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.004 | |
| PRK12329 | 449 | PRK12329, nusA, transcription elongation factor Nu | 0.004 | |
| PRK05325 | 401 | PRK05325, PRK05325, hypothetical protein; Provisio | 0.004 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 0.004 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 594 bits (1535), Expect = 0.0
Identities = 265/587 (45%), Positives = 366/587 (62%), Gaps = 19/587 (3%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 848
E+ LR PI ++GHVD GKT LLD IRGT V EAGGITQ IGAT P + I + L
Sbjct: 1 EKKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPL 60
Query: 849 K--ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 906
K LK+PGLL IDTPGHE+FTNLR RG L DIAILVVDI G +PQTIE++N+LK
Sbjct: 61 KKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILK 120
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
R T F+VA NK+DR+ GWK+ +AP +++I++Q+ VQ E +L +++ QL E G +
Sbjct: 121 RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSA 180
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEV 1024
+ + + KD +T IVP SA +GEGIPDLL++L Q+ + E+L E + TVLEV
Sbjct: 181 DRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEV 240
Query: 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHH 1083
K G GTTIDV+L +G L +GD IVV G GPIVT +RALL P P+ E+R + +
Sbjct: 241 KEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPV 300
Query: 1084 KQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVC 1143
++ AA G+KI+A LE A+AG+ L VV D+D+E+VKEE E+++ + RI+ EGV
Sbjct: 301 DEVVAAAGVKISAPDLEDALAGSPLRVV-RDEDVEEVKEEVEEEIEEI--RIETDEEGVV 357
Query: 1144 VQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVK 1203
V+A TLGSLEAL+ L+ + IP+ +G + K+DV+ AS + EK Y ILAF+VK
Sbjct: 358 VKADTLGSLEALVNELREE--GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVK 415
Query: 1204 VTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNC 1263
V P+A E AE+ VKIF D+IY L + + ++ KE +K + ++ V P ++ILP
Sbjct: 416 VLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGY 475
Query: 1264 VFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIK 1323
VF + DP ++GV+V+ G K G P+ + D +G I I++ + V AK G + AI
Sbjct: 476 VFRQSDPAIVGVEVLGGTIKPGVPLI--KEDGKRVGTIKQIQDQGENVKEAKAGMEVAIS 533
Query: 1324 IAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1370
I G GR D L I + +L+ +D+LS DE
Sbjct: 534 IDG-------PTVGRQIKEGDILYVDIPEEHAKILEQELKDELSDDE 573
|
Length = 586 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 453 bits (1166), Expect = e-144
Identities = 233/595 (39%), Positives = 355/595 (59%), Gaps = 19/595 (3%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 850
LRSPI ++GHVD GKT LLD IRG+ V + EAGGITQ IGAT P + I +L
Sbjct: 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLK 60
Query: 851 N--ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
LK+PGLL IDTPGHE+FTNLR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 61 KFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY 120
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
T F+VA NK+DR+ GW++ P +++ +Q VQ + ++ +V +L E+G E
Sbjct: 121 KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAER 180
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKV 1026
+ + D +T I+P SAI+GEGIP+LL +L Q+ + E+L E + T+LEVK
Sbjct: 181 FDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240
Query: 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK-Q 1085
G G TID V+ +G+L +GD I + G IVT +RALL P P++E+R +
Sbjct: 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDE 300
Query: 1086 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1145
+ AA G+KI A GL+ +AG+ + VV D+++E VKEE +++++ + +ID EGV V+
Sbjct: 301 VVAAAGVKIAAPGLDDVMAGSPIRVV-TDEEIEKVKEEILKEVEEI--KIDTDEEGVVVK 357
Query: 1146 ASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVT 1205
A TLGSLEAL+ L+ V I + IG V K+DV+ A + ++ + Y I+AF+VKV
Sbjct: 358 ADTLGSLEALVNELRDMGVPIKKA--DIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVL 415
Query: 1206 PEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265
P A + ++ +K+F +IIY L ++F +I ++EEKKR+ + + P ++++P VF
Sbjct: 416 PGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475
Query: 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1325
+ P ++GV+V+ G+ + G P+ D +G + S+++ + V +A GQ+ AI I
Sbjct: 476 RQSKPAIVGVEVLTGVIRQGYPLMKD--DGETVGTVRSMQDKGENVKSASAGQEVAIAIK 533
Query: 1326 GSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1380
++GR D L + +LK DDL+ +E + K+ +
Sbjct: 534 DV-------VYGRTIHEGDTLYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAEI 581
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 436 bits (1125), Expect = e-139
Identities = 188/575 (32%), Positives = 264/575 (45%), Gaps = 76/575 (13%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
LR P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA P + I
Sbjct: 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---------- 52
Query: 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
K+PG+ IDTPGHE+FT +R+RG+ + DIAILVV G+ PQTIE++N K
Sbjct: 53 ---KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP 109
Query: 912 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 971
+VA+NK+D+ A K + +L+E G+ E +
Sbjct: 110 IVVAINKIDKP-------EANPDK-------------------VKQELQEYGLVPEEWG- 142
Query: 972 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031
G+ VP SA +GEGI +LL L++ + + K + TV+EVK+ +G G
Sbjct: 143 ----GDV-IFVPVSAKTGEGIDELLELILLLAEV-LELKANPEGPARGTVIEVKLDKGLG 196
Query: 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1091
V++ +G L +GD IV G G + T + L P L ++ AA
Sbjct: 197 PVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGD 256
Query: 1092 IKITAQGLEHAIAGTGLYVVG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTL 1149
+ I + + A A L VV + K E E + + R + V ++A T
Sbjct: 257 VFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQ 316
Query: 1150 GSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
GSLEAL LK D VK+ + +G + + DVM A+ A I+ F+V+V P
Sbjct: 317 GSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASD------AVIIGFNVRVDP 370
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
EAR LAE GVKI D+IY L + A + + E +K+E + LP
Sbjct: 371 EARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP----- 425
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQKAAIKI 1324
K + G V EG+ K G P+ + RD + I G + S++ V +KGQ+ I I
Sbjct: 426 -KVGAIAGCMVTEGVIKRGAPVRV-VRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAI 483
Query: 1325 AGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK 1359
R D L + LK
Sbjct: 484 EN----------YRDIKEGDILEVFEPVEVKRTLK 508
|
Length = 509 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 426 bits (1098), Expect = e-129
Identities = 224/568 (39%), Positives = 340/568 (59%), Gaps = 18/568 (3%)
Query: 808 TKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTP 865
T LLD IR T V + EAGGITQ IGAT P + I++ L A +K+PGLL IDTP
Sbjct: 475 TTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP 534
Query: 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925
GHE+FT+LR RG L D+A+LVVDI G +PQTIE++N+L+ T F+VA NK+D + GW
Sbjct: 535 GHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGW 594
Query: 926 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 985
+ P + +Q+ E ++L +++ +L E G + + + + +D T IVP S
Sbjct: 595 NISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVS 654
Query: 986 AISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVIEGHGTTIDVVLVNGVL 1043
A +GEGIP+LL+++ QK + E+L E + T+LEVK +G GTTID ++ +G L
Sbjct: 655 AKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTL 714
Query: 1044 HEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV-KGTYLHHKQIKAAQGIKITAQGLEHA 1102
GD IVV G IVT +RALL P P+ E+R + + ++ AA G+KI A GLE
Sbjct: 715 RRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774
Query: 1103 IAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSD 1162
+AG+ + +V + +E KEE M++++ DK EG+ ++A TLGSLEAL L+
Sbjct: 775 LAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDK--EGILIKADTLGSLEALANELRKA 832
Query: 1163 AVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIA 1222
+ I + +G + KKDV+ A ++ Y IL F+VKV PEA+E AE+ GVKIF+
Sbjct: 833 GIPIKKA--EVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVD 890
Query: 1223 DIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIA 1282
+IIY L + +T ++ +E+KKRE ++ + P ++++LP+C+F + +P ++GV+V+EG
Sbjct: 891 NIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPAIVGVEVLEGTL 950
Query: 1283 KVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1342
+VG + + D + +G + SI++ + V AK G+ AI I G+ + GRH D
Sbjct: 951 RVGVTLI--KEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDE 1001
Query: 1343 EDELVSHISRKSIDVLKANYRDDLSMDE 1370
+ L + + L Y D L DE
Sbjct: 1002 GETLYVDVPESHVRELYHKYMDRLRDDE 1029
|
Length = 1049 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 2e-81
Identities = 85/211 (40%), Positives = 113/211 (53%), Gaps = 43/211 (20%)
Query: 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854
P+ +MGHVD GKT LLD IR TNV GEAGGITQ IGA P + +
Sbjct: 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPID--------------V 46
Query: 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
K+PG+ IDTPGHE+FTN+R+RG+ + DIAILVV G+ PQTIE++N K N IV
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974
A+NK+D+ YG R+ +++L G ++
Sbjct: 107 AINKIDKPYG--------------------TEADPERVKNELSELGLVG---------EE 137
Query: 975 RGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005
G +IVP SA +GEGI DLL ++ +
Sbjct: 138 WGGDVSIVPISAKTGEGIDDLLEAILLLAEV 168
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|239674 cd03703, aeIF5B_II, aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-53
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1076
LQ TVLEVK EG GTTIDV+L +G L EGD IVVCGL GPIVT +RALL P P+KELRV
Sbjct: 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRV 60
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAME 1126
K ++H K++KAA G+KI A LE AIAG+ L VVGP+D++E++KEE ME
Sbjct: 61 KSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEVME 110
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. Length = 110 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-43
Identities = 159/516 (30%), Positives = 226/516 (43%), Gaps = 139/516 (26%)
Query: 774 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA 833
K D + R P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA
Sbjct: 231 VKLVSLLEDDDEEDLVP--RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGA 288
Query: 834 TYFPAENIRERTRELKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIM 891
Y ++ G + +DTPGHE+FT +R+RG+ + DI +LVV
Sbjct: 289 -Y-----------------QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAAD 330
Query: 892 HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951
G+ PQTIE++N K IVA+NK+D+ +
Sbjct: 331 DGVMPQTIEAINHAKAAGVPIIVAINKIDK------------------PGANPDR----- 367
Query: 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE 1009
+ +L E G+ E + G+T VP SA +GEGI +LL +LL E
Sbjct: 368 ---VKQELSEYGLVPEEW-----GGDTI-FVPVSAKTGEGIDELLEAILLQ-------AE 411
Query: 1010 KLTFRNELQC--------TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061
L EL+ TV+E K+ +G G V++ NG L GD IVV G TT
Sbjct: 412 VL----ELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGD-IVVAG------TT 460
Query: 1062 ---IRALLTPHPMKELRVKGTYLHHKQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD 1116
+RA++ + K++K A + GL AG VV +D
Sbjct: 461 YGRVRAMVDD-------------NGKRVKEAGPSTPVEILGLSGVPQAGDEFVVV---ED 504
Query: 1117 LEDVKEEA-------------------MEDMKSVMSRIDKSGEG----VCVQASTLGSLE 1153
+ +E A +E++ M K GE + ++A GS+E
Sbjct: 505 EKKAREIAEYRQEKAREKKLARQQRVSLENLFEQM----KEGEVKELNLIIKADVQGSVE 560
Query: 1154 AL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARE 1210
AL LE L +D VK+ + +G + + DV A+ A I+ F+V+ +AR+
Sbjct: 561 ALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARK 614
Query: 1211 LAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE 1246
LAE+ GV I IIY L D A ++ + E + E
Sbjct: 615 LAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEE 650
|
Length = 746 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 3e-43
Identities = 158/555 (28%), Positives = 246/555 (44%), Gaps = 93/555 (16%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R P+ IMGHVD GKT LLD IR T V +GEAGGITQ IGA + E+ + T
Sbjct: 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMIT------- 138
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
+DTPGHE+FT++R+RG+ + DI +LVV G+ PQTIE+++ K N
Sbjct: 139 --------FLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI 190
Query: 913 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN 972
IVA+NK+D+ + N D ++ +L E G+ E +
Sbjct: 191 IVAINKIDK----------------PEANPD----------RVKQELSEYGLVPEDW--- 221
Query: 973 KDRGETFNIVPTSAISGEGIPDLL-LLLVQWTQKTMVEKLTFRNELQC--TVLEVKVIEG 1029
G+T VP SA++G+GI +LL ++L+Q + VE+L Q V+E ++ +G
Sbjct: 222 --GGDTI-FVPVSALTGDGIDELLDMILLQ----SEVEELKANPNGQASGVVIEAQLDKG 274
Query: 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI----RALLTPHPMKELRVKGTYLHHKQ 1085
G V++ +G L GD +VV G + I +++ P K + + G
Sbjct: 275 RGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSKPVEILGL-----S 329
Query: 1086 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEE--AMEDMKSVMSRIDKSGEGVC 1143
A G + E G + ++++ + + +
Sbjct: 330 DVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNII 389
Query: 1144 VQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1200
++A GSLEA+ LE L ++ VK+ V +G + + D+ AS A I+ F
Sbjct: 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASA------SNAIIIGF 443
Query: 1201 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL-----KEEKKREAADEAVFPC 1255
+V+ A+ +AE V I +IY L D+ A + + +EE +A VF
Sbjct: 444 NVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVF-- 501
Query: 1256 VLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDT 1313
K + G V EG+ K G P+ + RD + I G I S++ V
Sbjct: 502 ---------NVPKIGNIAGCYVTEGVIKRGNPLRV-IRDGVVIFEGEIDSLKRFKDDVKE 551
Query: 1314 AKKGQKAAIKIAGSN 1328
G + I I N
Sbjct: 552 VSNGYECGIGIKNYN 566
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 3e-40
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 62/226 (27%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRG----------------TNVQEGEAGGITQQIGATYF 836
R I+GHVD GKT L D + ++E GIT +I A F
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 837 PAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 896
+ + +IDTPGH FT RG+ D AILVVD + G+ P
Sbjct: 62 ETKKRL----------------INIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMP 105
Query: 897 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956
QT E L L K IV +NK+DR+ E +V
Sbjct: 106 QTREHLLLAKTLGVPIIVFINKIDRVDD---------------------AELEE----VV 140
Query: 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
++ + + + GET +VP SA++GEGI +LL L +
Sbjct: 141 EEISRELLEKYGF-----GGETVPVVPGSALTGEGIDELLEALDLY 181
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-39
Identities = 138/519 (26%), Positives = 222/519 (42%), Gaps = 102/519 (19%)
Query: 765 AVTRKKEPAAKSKEPEVDATPKQAEENL-RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE 823
+ +++ K +D T E ++ R PI I+GHVD GKT LLD IR T + + E
Sbjct: 214 NIISEEKNNINEKTSNLDNTSAFTENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE 273
Query: 824 AGGITQQIGA--TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 881
AGGITQ+IGA F ++ ++ ++ +DTPGHE+F+++RSRG+ +
Sbjct: 274 AGGITQKIGAYEVEFEYKDENQK--------------IVFLDTPGHEAFSSMRSRGANVT 319
Query: 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941
DIAIL++ G++PQTIE++N ++ N IVA+NK+D+ N
Sbjct: 320 DIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDK----------------ANAN 363
Query: 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
T+ +I QL + + E G ++P SA G I LL ++
Sbjct: 364 TE----------RIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETIL- 406
Query: 1002 WTQKTMVEKLTFR----NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP 1057
+ E + Q +LE + + G +++ NG LH GD IV
Sbjct: 407 ----LLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIV------- 455
Query: 1058 IVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA-GTGLYVVGPDDD 1116
++R L +K A + GL A G V + +
Sbjct: 456 ---------IGTSYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKE 506
Query: 1117 -LEDVKEEAMEDMKSVMSRI------------DKSGEGVCVQASTLGSLEALLEFL---K 1160
+ + + K RI +K + ++ T GS+EA++ +
Sbjct: 507 AKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIP 566
Query: 1161 SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIF 1220
V++ + S+G V + DV AS A ILAF+ + P A++ A +L + I
Sbjct: 567 QKKVQLNILYASLGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIK 620
Query: 1221 IADIIYHLFDQFTAYINNLK--EEKKR---EAADEAVFP 1254
+IY L + A + +L E KK EA + VFP
Sbjct: 621 EYQVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFP 659
|
Length = 742 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 62/207 (29%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
++GHVD GKT L + G ++ E R T + + P
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDR-RGTRKETFLDTLKEERERGITIKTGV-VEFEWP 60
Query: 858 GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915
+ IDTPGHE F+ RG D A+LVVD G+EPQT E LN+ IVA
Sbjct: 61 KRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVA 120
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
+NK+DR+ + +F+ L +I LK G +
Sbjct: 121 VNKIDRV---------------------GEEDFDEVLREIKELLKLIG-------FTFLK 152
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQW 1002
G+ I+P SA++GEGI +LL +V+
Sbjct: 153 GKDVPIIPISALTGEGIEELLDAIVEH 179
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|221359 pfam11987, IF-2, Translation-initiation factor 2 | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 7e-22
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 1125 MEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDV 1181
+ED+ + + + ++A GSLEA+ + L+ +D VK+ + +G + + DV
Sbjct: 3 LEDLFEQIKEGEVKELNLILKADVQGSLEAIKDSLEKLSTDEVKVNIIHAGVGAITESDV 62
Query: 1182 MRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1234
M AS A I+ F+V+ +AR+LAE+ GV I IIY L D A
Sbjct: 63 MLASAS------NAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKA 109
|
IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyzes the hydrolysis of GTP following initiation-complex formation. Length = 109 |
| >gnl|CDD|239672 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR----ALLTPHPMKE 1073
+ TV+E K+ +G G V++ NG L +GD IV G G I T + ALL P
Sbjct: 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTP 61
Query: 1074 LRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
+ + KA G+ + A E G+ V
Sbjct: 62 VEI---LGLKDVPKAGDGVLVVASEKEAKEIGSYRLV 95
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. Length = 95 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (202), Expect = 2e-15
Identities = 129/577 (22%), Positives = 246/577 (42%), Gaps = 63/577 (10%)
Query: 221 EDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTD 280
E+E E+ + +E + ++++ + + D L + K D+ + E D
Sbjct: 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
Query: 281 KKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSE 340
+ KK + + A E + D K K EE + K + ++ + ++ +
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 341 VLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEK 400
E+ E + K+++ ++ +D K K + + + + KKK E
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK--KADELKKAAAAKKKADEA 1423
Query: 401 EKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESA 460
+K E+ +E + E D A +K E +K E A
Sbjct: 1424 KKKAEEKKKADEAK---------------------KKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 461 ASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEA 520
K ++ KK E +KKA A A++ ++ K+E + K ++ K KK + + ++ +EA
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Query: 521 LARRKEAEERKKREEEERLR--KEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
K+A+E KK EE ++ K+ EE+K+ +EL ++AEE ++ +EK+K + KK +E
Sbjct: 1522 ----KKADEAKKAEEAKKADEAKKAEEKKKADEL-KKAEEL-KKAEEKKKAEEAKKAEED 1575
Query: 579 KLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLK 638
K + ++ EEA++ E R + + K K +K+ + K
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA------------- 1622
Query: 639 EDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDE 698
E +K +E+++ + ++ E E+ ++ E L E+ A +E + EED E
Sbjct: 1623 ----EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Query: 699 EWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAE--KPAVAVKKAIP 756
E K A +DE+ +E +E K A + AE K A +KKA
Sbjct: 1679 E------------AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Query: 757 EQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLR 793
E +K+++A +E K++E + D K+ +L+
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (201), Expect = 3e-15
Identities = 100/434 (23%), Positives = 183/434 (42%), Gaps = 33/434 (7%)
Query: 383 KGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE---LGQGPAPQEEKVQVQPPE 439
K E V + + KK +E +K ER +E E+ Q EE + +
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKN 499
ADE EEK+++ +KKK ++ +K E K A A + K +A E KK
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER------KRLEELE 553
+K + + + +E ++ +E K++ + +K EE++ K+ EE +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 554 RQAEEAKRRKKEKEKEKLLKKKQEGKLLT---GKQKEEARRLEAMRNQF----LAKGIPL 606
++A+E K+ K+K KKK E K K+ EEA++ + + + A+
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 607 PTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKV 666
+ + A + K + K A A K+ + E+K+ + K++ E +K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
Query: 667 EEG----------ESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAF 716
+E E+ EEK + + K E+++ ++ E K+ +D N+ ++ A
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA- 1583
Query: 717 DDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKS 776
EEA E +++ +K + AE+ A + I + LK + +K E K
Sbjct: 1584 --EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 777 KEPEVDATPKQAEE 790
+ E K+AEE
Sbjct: 1642 EAEEK----KKAEE 1651
|
Length = 2084 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 1e-14
Identities = 65/262 (24%), Positives = 97/262 (37%), Gaps = 54/262 (20%)
Query: 801 GHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GHVD GKT LL + G E + G+T +G YFP +
Sbjct: 7 GHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------------YRL 52
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 916
G ID PGHE F + G G D A+LVVD G+ QT E L +L + IV +
Sbjct: 53 GF--IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
K DR+ N + M + QI L
Sbjct: 111 TKADRV------------------NEEEIKRTEMFMKQI---LNSYIFLKNA-------- 141
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDV 1036
I TSA +G+GI +L L + ++ + L+ + ++G GT +
Sbjct: 142 ---KIFKTSAKTGQGIGELKKELKNLLES--LDIKRIQKPLRMAIDRAFKVKGAGTVVTG 196
Query: 1037 VLVNGVLHEGDQIVVCGLQGPI 1058
+G + GD + + + +
Sbjct: 197 TAFSGEVKVGDNLRLLPINHEV 218
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 54/199 (27%), Positives = 76/199 (38%), Gaps = 52/199 (26%)
Query: 801 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GH+D GKT L+ + G + E + GIT +G Y L L
Sbjct: 6 GHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD----------LPDGKRLGF- 54
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 916
ID PGHE F G+G D +LVV G+ PQT E L +L+ + + +V L
Sbjct: 55 ----IDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKGLVVL 110
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
K D V + RL + ++ E T L
Sbjct: 111 TKADL----------------------VDED---RLELVEEEILELLAGTFL-------- 137
Query: 977 ETFNIVPTSAISGEGIPDL 995
I P S+++GEGI +L
Sbjct: 138 ADAPIFPVSSVTGEGIEEL 156
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (178), Expect = 1e-12
Identities = 145/664 (21%), Positives = 288/664 (43%), Gaps = 57/664 (8%)
Query: 44 EEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGG 103
E + +E +KKK + + + + D++K + E A+ KKK++ K
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA----KKKAEEAKKKA 1331
Query: 104 NNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAA 163
+ A K+ + + + D+ + + A++ K +E KK
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA----------- 1380
Query: 164 AFDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDE 223
DA +E E D + +++++D E K KK + DE +
Sbjct: 1381 --DAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 224 DVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKK 283
E+ + DE ++ KK++++ K + E E K + +E + KK
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAE-------EAKKADEAKKKAEEAKKADEAKK 1490
Query: 284 KSNKGGRMRSSAFDLLENEDEDDDEKK-DKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVL 342
K+ + + A E + + D+ KK ++ ++ + ++ KK +KK
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA-------- 1542
Query: 343 LDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNK-----KKK 397
+E+ ++ ++ A + K+ E + + K E + + + K
Sbjct: 1543 -EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
Query: 398 KEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
+E++K ++E + E+ KI AE + +EEK +V+ + + + ++ +E
Sbjct: 1602 EEEKKMKAEEAKKAEE--AKIKAE--ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
E+ ++ KK +E +KKA A AE+ ++ +EA+ K + E K ++++++
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL-------KKEAEEAKKAEELKKK 1710
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
+ +K+AEE KK EEE K EE +K EE +++AEEAK+ ++EK+K LKK++E
Sbjct: 1711 EAE--EKKKAEELKK-AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPL 637
K ++++EA E + + + + + K+ K + N + +
Sbjct: 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM 1827
Query: 638 KEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDD 697
EDS KE K L E D E K + + E+ + AD KE +++E+D+++
Sbjct: 1828 -EDS-AIKEVADSKNMQLEEADAFEKHKFNK-NNENGEDGNKEADFNKEKDLKEDDEEEI 1884
Query: 698 EEWD 701
EE D
Sbjct: 1885 EEAD 1888
|
Length = 2084 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 54/219 (24%)
Query: 801 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GHVD GKT LL I G N + E + G+T +G Y+P + R V
Sbjct: 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR-------------VL 53
Query: 858 GLLVIDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVA 915
G ID PGHE F +N+ + G G D A+LVV G+ QT E L +L++ N VA
Sbjct: 54 GF--IDVPGHEKFLSNMLA-GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVA 110
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L K DR+ + + +++ Q+ L+E G
Sbjct: 111 LTKADRV-------DEARIAEVRR--------------QVKAVLREYGF----------- 138
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014
+ T+A G GI L L+Q ++ + FR
Sbjct: 139 -AEAKLFVTAATEGRGIDALREHLLQLPEREHAAQHRFR 176
|
Length = 614 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 58/216 (26%), Positives = 80/216 (37%), Gaps = 67/216 (31%)
Query: 798 CIMGHVDTGKTKLLDCI---------RGTNVQ-------EGEAGGITQQIGATYFPAENI 841
I+ H+D GK+ L D + R Q E E G IT I
Sbjct: 4 SIIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERG-IT------------I 50
Query: 842 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+ + L A LL +IDTPGH F+ SR C+ A+LVVD G+E QT+
Sbjct: 51 KAQAVRLFYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLA 110
Query: 901 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ L N E I +NK+D A +KQ+ DV
Sbjct: 111 NFYLALENNLEIIPVINKID-------LPAAD-PDRVKQEIEDV---------------- 146
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
G++ + SA +G G+ DLL
Sbjct: 147 -LGLDAS------------EAILVSAKTGLGVEDLL 169
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--------YFPAENIRERTRELK 849
I+ H+D GKT L + I GI +IG + E +ER +
Sbjct: 14 GIVAHIDAGKTTLTERI-------LFYTGIISKIGEVHDGAATMDWMEQE--QERGITIT 64
Query: 850 ANAT---LKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 905
+ AT K + +IDTPGH FT R + D A++VVD + G+EPQT
Sbjct: 65 SAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA 124
Query: 906 KMRNTEFIVALNKVDRL 922
I+ +NK+DRL
Sbjct: 125 DKYGVPRILFVNKMDRL 141
|
Length = 697 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 48/218 (22%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-----YFPAENIRERT------- 845
CI+ HVD GKT L D + + G I++++ E R T
Sbjct: 4 CIIAHVDHGKTTLSDSLLASA------GIISEKLAGKARYLDTREDEQERGITIKSSAIS 57
Query: 846 --RELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
E + L+ +ID+PGH F++ + L D A++VVD + G+ QT L
Sbjct: 58 LYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVL 117
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK-- 960
+ ++ +NK+DRL I + + + RL++IV +
Sbjct: 118 RQALEERVKPVLVINKIDRL--------------ILELKLSPEEAYQ-RLLRIVEDVNAI 162
Query: 961 ------EQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992
E+ + + +G N+ SA+ G G
Sbjct: 163 IETYAPEEFKQEKWKFS-PQKG---NVAFGSALDGWGF 196
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 44/207 (21%)
Query: 799 IMGHVDTGKTKLLDCIRGT--------NVQEGEAGGITQQIG--ATYFPAENIRERTREL 848
++GHVD+GKT L + N Q E G IT +G + E +
Sbjct: 5 LLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG-ITLDLGFSSFEVDKPKHLE---DN 60
Query: 849 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
+ LV D PGH S G+ + D+ +LVVD G++ QT E L + ++
Sbjct: 61 ENPQIENYQITLV-DCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLVIGELL 119
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
IV LNK+D + + R +K Q+
Sbjct: 120 CKPLIVVLNKIDLIPEEERKRKIEKMKKRLQKTL-------------------------- 153
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDL 995
K R + I+P SA GEG +L
Sbjct: 154 ---EKTRLKDSPIIPVSAKPGEGEAEL 177
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 53/200 (26%), Positives = 72/200 (36%), Gaps = 56/200 (28%)
Query: 800 MGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
GH+D GKT LL + G + E + GIT +G Y E+
Sbjct: 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGV-------------- 51
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVA 915
+ ID PGH F + G G D A+LVV GL QT E L +L + + I+
Sbjct: 52 --MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIV 109
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L K DR+ R+ Q + Q+ L
Sbjct: 110 LTKADRVD-------------------------EARIEQKIKQILAD---LSL------- 134
Query: 976 GETFNIVPTSAISGEGIPDL 995
I TSA +G GI +L
Sbjct: 135 -ANAKIFKTSAKTGRGIEEL 153
|
Length = 447 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAG-GITQQIGATYFPAENIRERTRELKANATLKVP 857
I+G + GK+ LL+ + G + E G T+ I E + K N
Sbjct: 6 IVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYV-----TTVIEEDGKTYKFN------ 54
Query: 858 GLLVIDTPGHESFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
++DT G E + +R + DI ILV+D+ LE QT E ++ +
Sbjct: 55 ---LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-GV 110
Query: 911 EFIVALNKVD 920
I+ NK+D
Sbjct: 111 PIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-09
Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 42/310 (13%)
Query: 419 LAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA 478
L +L +G + E + E P A+ + GEE E+ + + K E E E +
Sbjct: 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 479 AAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEER 538
A E + +G+ EA E KG + + EA E E E EE
Sbjct: 687 AERKGEQEGEGEIEAKE-----ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
+ E E + E+E + + + + + + + + + EG++ G+ E
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM---------- 791
Query: 599 FLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
GD+ A K + + G + D E K+ E +QE E
Sbjct: 792 ---------KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKD-ETGEQELNAE- 840
Query: 659 DVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDD 718
+ GE ++ E+G V+ E E EEE+++++EE + + ++
Sbjct: 841 NQGEAKQDEKG----VDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE------------EE 884
Query: 719 EEADSEPEPL 728
EE + EPL
Sbjct: 885 EEEEENEEPL 894
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA-TLKV 856
CI GH+ GKT LLD + + + + + ++ +ER +K+N +L +
Sbjct: 4 CIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLVL 63
Query: 857 PG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+ +IDTPGH +F + + LCD +LVVD++ GL T +
Sbjct: 64 EDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQEG 123
Query: 910 TEFIVALNKVDRL 922
++ +NK+DRL
Sbjct: 124 LPMVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
I+ H+D GK+ L D + ++ G I++ ++ + ++ RER +KA A L
Sbjct: 7 SIIAHIDHGKSTLADRL----LEY--TGAISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L +IDTPGH F+ SR C+ A+L+VD G+E QT+ ++ L
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120
Query: 908 RNTEFIVALNKVD 920
+ E I +NK+D
Sbjct: 121 NDLEIIPVINKID 133
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 34/184 (18%), Positives = 77/184 (41%), Gaps = 2/184 (1%)
Query: 420 AELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
+ Q P +K Q + + + A+++ E+ + ++ +K ++ ++AA
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
A + KQ +++A + + K++ +K +K+ + Q + +A K++ E
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+K E E K E + +A+ + + K + + K E + A EA R
Sbjct: 173 KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA--KAAAEAAAKAEAEAAAAAAAEAERKAD 230
Query: 600 LAKG 603
A+
Sbjct: 231 EAEL 234
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-08
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA--- 852
I+ H+D GK+ L D + ++ GG+++ ++ A + +I RER +KA A
Sbjct: 13 SIIAHIDHGKSTLADRL----LEL--TGGLSEREMRAQVLDSMDIERERGITIKAQAVRL 66
Query: 853 TLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
K L +IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L
Sbjct: 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 126
Query: 908 RNTEFIVALNKVD 920
N E I LNK+D
Sbjct: 127 NNLEIIPVLNKID 139
|
Length = 603 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-07
Identities = 76/318 (23%), Positives = 146/318 (45%), Gaps = 34/318 (10%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A SK K+++KE E+ + ERT + D LE IL EL + Q + ++ Q + A
Sbjct: 165 AGISKYKERRKETER-KLERTRENLDRLEDILNELER----QLKSLERQ-------AEKA 212
Query: 448 D---EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQ---QGKSEAVETKKNDG 501
+ E E + E A + ++ +E E+ AE++ + + +E K +
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
Query: 502 KSKGPEKKMSKQVREMQEAL------ARRKEAEERKKREEEERLRKEEEERK-RLEELER 554
+ + E + +++ E+Q+ L R E +++ RE L ++ EE + +LEELE
Sbjct: 273 RLEVSE--LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
+ +E E E EKL + K+E + L + +E LE + ++ L +
Sbjct: 331 KLDELAEELAELE-EKLEELKEELESLEAELEELEAELEELESRLEE----LEEQLETLR 385
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
SK + + + S +++ E + +E+ Q++ E LL E +++E ++
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELE 443
Query: 675 EEKPEIADAPKENEVEEE 692
E + E+ + +E E EE
Sbjct: 444 ELEEELEELQEELERLEE 461
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGHE F+ R D A++V+D G+EPQT + + ++R I +NK+D
Sbjct: 75 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLD 134
Query: 921 R 921
R
Sbjct: 135 R 135
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 915
+ DTPGHE +T + G+ D+AIL+VD G+ QT I +LL +R+ +VA
Sbjct: 90 IADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI--ASLLGIRH--VVVA 145
Query: 916 LNKVDRLYGWKTCRNAPIVKA 936
+NK+D L + IV
Sbjct: 146 VNKMD-LVDYSEEVFEAIVAD 165
|
Length = 431 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 69/316 (21%), Positives = 114/316 (36%), Gaps = 68/316 (21%)
Query: 797 CCIMGHVDTGKTKLL-----DC--IRGTNVQEGEAGGITQQIGATYF-------PAENIR 842
+GHVD GK+ L+ D I +++ E + F E R
Sbjct: 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEE--R 67
Query: 843 ER--TRELK-ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD-------IMH 892
ER T ++ + +ID PGH F G+ D+A+LVVD
Sbjct: 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF 127
Query: 893 GLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951
G+ QT E L + + IVA+NK+D L W + F
Sbjct: 128 GVGGQTREHAFLARTLGIKQLIVAVNKMD-LVSWD------------------EERFEE- 167
Query: 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
+V V++L + + Y KD +P S G+ + + + T++E L
Sbjct: 168 IVSEVSKLLKM-----VGYNPKD----VPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL 218
Query: 1012 --------TFRNELQCTVLEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTI 1062
L+ + +V I G G T+ V V GV+ G ++ + +V +
Sbjct: 219 DQLEPPERPLDKPLRLPIQDVYSISGIG-TVPVGRVESGVIKPGQKVTF--MPAGVVGEV 275
Query: 1063 RALLTPHPMKELRVKG 1078
+++ H G
Sbjct: 276 KSIEMHHEEISQAEPG 291
|
Length = 428 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM-QEALA 522
++K K E+++K AE+ QQ ++ E K K + ++ KQ E ++A
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK---KKQEGK 579
++K+AEE + K E E KR ++A ++K E E K KK+
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Query: 580 LLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
K EA++ + A EA + K + K+A +A
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
|
Length = 387 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-07
Identities = 95/556 (17%), Positives = 195/556 (35%), Gaps = 72/556 (12%)
Query: 248 SGKNSSTFDLLVNENDDVKED-----KDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENE 302
SG + +NE+DD++E + ++ +S+ G + S ENE
Sbjct: 3820 SGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVS--ENE 3877
Query: 303 DED-DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGA 361
+ D ++E +D DEE I + +S +E L DE N +
Sbjct: 3878 NSDSEEENQDLDEEVNDI-----------PEDLSNSLNEKLWDEPN--------EEDLLE 3918
Query: 362 VDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE 421
+ K ++ ESD V+K + +++KE E+ S+ +++ I
Sbjct: 3919 TEQKSNEQSAANNESD--LVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
Query: 422 LGQGPAPQE-----EKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKE 472
Q P E E +++ E D+ D + +E KEE+ A +K E
Sbjct: 3977 NSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADA-----EKDEPM 4031
Query: 473 KEKKAAAAAAAEDKQQGKSEAVETKKNDGK--SKGPEKKMSKQVREMQEALARRKEAEER 530
+++ D+ + + + ++D K G E + V+E +E+ +++E
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE----ENVQENEESTEDGVKSDEE 4087
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK----EKEKLLKKKQEGKLLTGK-- 584
++ E + + K + + EA +K E E+L ++ T
Sbjct: 4088 LEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGE 4147
Query: 585 ----QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
Q++ + EAM + ++Q + + +
Sbjct: 4148 FEQVQEDTSTPKEAMSEADRQY--------QSLGDHLREWQQANRIHEWEDLT----ESQ 4195
Query: 641 SIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKE-NEVEEEDDDDDEE 699
S + E + E D+ E+ + +++ P N +D+ DE
Sbjct: 4196 SQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEV 4255
Query: 700 WDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQP 759
D + D +++ ++ +E + + E + D ++ K P P
Sbjct: 4256 GDKQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVKITPAMP 4315
Query: 760 LKSQDAVTRKKEPAAK 775
+ + K E + K
Sbjct: 4316 IDEARDLWNKHEDSTK 4331
|
Length = 4600 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 8e-07
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 429 QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQ 488
+++K Q Q E A E++ + EKE AA ++KK+ +E K+ A E +
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Query: 489 GKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKR 548
+ A K + + A A +K A E KK+ E E +K E K+
Sbjct: 141 AAAAA---------------KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Query: 549 LEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
E E A+ A KK+ E E K E K
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216
|
Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
G Q+ Q +P A + +K E++ EE+ + ++ ++KE E++AAA AA
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ +Q +A E +K Q A+ K+A E K + E E +K +
Sbjct: 105 KQAEQAAKQAEEKQK-------------------QAEEAKAKQAAEAKAKAEAEAEKKAK 145
Query: 544 EERKRLEELERQ---AEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL 600
EE K+ E E + A EAK++ E +K+ + K + K K E + +A +
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK-AEAKAKAKAEEAKAKAEAAKAK 204
Query: 601 AKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIE-SKEKEQEKQE 653
A EAA+K +A + D + EKQ
Sbjct: 205 A--------AAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQG 250
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 861 VIDTPGHESFT-NLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
+ DTPGHE +T N+ + G+ D+AIL+VD G+ QT I S LL +R +V
Sbjct: 82 IADTPGHEQYTRNMVT-GASTADLAILLVDARKGVLEQTRRHSYIAS--LLGIR--HVVV 136
Query: 915 ALNKVD 920
A+NK+D
Sbjct: 137 AVNKMD 142
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 48/279 (17%), Positives = 106/279 (37%), Gaps = 2/279 (0%)
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
P A A E E KEE ++ K++K+K+KEK + K++ K + +
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLR-KEEEERKRLEELERQA 556
K K K E+ ++ + +E + + ++ K++ + + EEE++R E
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
Query: 557 EEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASK 616
+ + +E+EK ++ + T +E+ R + ++ + + P AS
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASP 265
Query: 617 RPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ +K+ + + P + + K + + + + V + S + E
Sbjct: 266 ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK-RKEIVTVLQDAQGVGKIVSNVILE 324
Query: 677 KPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
+ D EN V E + + + +G
Sbjct: 325 GKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGG 363
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
+V DTPGHE +T + G+ D+A+L+VD G+ QT I S LL +R+ ++
Sbjct: 83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIAS--LLGIRH--VVL 138
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQ 939
A+NK+D L + I K
Sbjct: 139 AVNKMD-LVDYDEEVFENIKKDYLA 162
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 26/135 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-NATLKV 856
++G GK+ LL+ + +G ++ TR+ L
Sbjct: 1 VVVGRGGVGKSSLLNAL----------------LGGEVGEVSDVPGTTRDPDVYVKELDK 44
Query: 857 PG--LLVIDTPGHESFTNLRSRGSGL-----CDIAILVVDIMHG--LEPQTIESLNLLKM 907
L+++DTPG + F L D+ +LVVD E + L L+
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 908 RNTEFIVALNKVDRL 922
I+ NK+D L
Sbjct: 105 EGIPIILVGNKIDLL 119
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069
L+ V +V +G GT + +G L +GD++ V G + +++L
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK 53
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 66/331 (19%), Positives = 135/331 (40%), Gaps = 20/331 (6%)
Query: 381 VNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEP 440
+ + + KKK+++ K ++ E+++L + Q +E K+ Q
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQ---- 744
Query: 441 VAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND 500
+++ EE+ ++++K + KEK+ A +K + + E E K
Sbjct: 745 ----KIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQ 800
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL-------- 552
+ ++ K+ E+ E E EE+ K EE E L E +E ++LE+L
Sbjct: 801 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 860
Query: 553 -ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN-QFLAKGIPLPTGD 610
E +E ++ ++E+L ++K + +L + ++KE+ + E Q
Sbjct: 861 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEI 920
Query: 611 KEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGE 670
+E ++ K +S + +++ E ++E+E++ L + E V
Sbjct: 921 EERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMA 980
Query: 671 SLTVEEKPEI--ADAPKENEVEEEDDDDDEE 699
EEK E D K+ +EEE + E
Sbjct: 981 IAEFEEKEERYNKDELKKERLEEEKKELLRE 1011
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 389 QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+++KK++++ E ++ + E++ + A QE+K Q E A A
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA---EEAAKQAALK 130
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+K EE ++AA+ K K + E ++ AA AAAE K++ ++EA + + K K
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK---- 186
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
EA A K A E KK+ E E +K E K+ E +A AK + K
Sbjct: 187 ---------AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Query: 569 EKLLKKKQEGKLLTGKQKEEA 589
+ + + +
Sbjct: 238 AEKAAAAKAAEKAAAAKAAAE 258
|
Length = 387 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 3/156 (1%)
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
+E++ E ++E A K+ ++ K + +E + E+ + K E E + +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE---AKRR 562
+++ ++ E++E L KE E K E EER EE + L ELE EE
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
E+ +E ++E L + E LE ++ +
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKRE 405
|
Length = 1163 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 45/147 (30%)
Query: 862 IDTPG-HESFTNLRSR-------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+DTPG H+ L R D+ + VVD + L LLK T I
Sbjct: 56 VDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPVI 115
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
+ LNK+D +K + L+ ++ +LKE E
Sbjct: 116 LVLNKIDL---------------VKDKE---------DLLPLLEKLKELHPFAE------ 145
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLV 1000
I P SA+ GE + +LL +V
Sbjct: 146 -------IFPISALKGENVDELLEYIV 165
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 27/164 (16%), Positives = 70/164 (42%)
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
V EEE + A ++ +++ + E E+ AAA A E K + + A + + +
Sbjct: 34 HSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAE 93
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
+ + A A + + +K ++++ + ++++ KR + + + ++ +
Sbjct: 94 AAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRR 153
Query: 567 EKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGD 610
+ +KK++ + T K E E + LA+ + + +
Sbjct: 154 RGRRRRRKKKKKQKPTEKIPREVVIPETITVAELAEKMAVKAAE 197
|
Length = 746 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 58/270 (21%), Positives = 99/270 (36%), Gaps = 75/270 (27%)
Query: 799 IMGHVDTGKTKLLDCI--------RGTNVQEGEAG----------GITQQIGATYFPAEN 840
I+ H+D GKT + I + V G A GIT Q AT ++
Sbjct: 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCFWKD 63
Query: 841 IRERTRELKANATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMHGLE 895
R + +IDTPGH FT +LR + D A+ V D + G++
Sbjct: 64 HR----------------INIIDTPGHVDFTIEVERSLR-----VLDGAVAVFDAVAGVQ 102
Query: 896 PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955
PQT I +NK+DR A + ++Q ++ + V +
Sbjct: 103 PQTETVWRQADRYGVPRIAFVNKMDRT-------GADFYRVVEQ----IREKLGANPVPL 151
Query: 956 VTQLKEQG--------MNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007
+ + + + Y + + GE IP+ LL + ++ +
Sbjct: 152 QLPIGAEDDFEGVVDLIEMKALYWDGELGEKIEETD--------IPEDLLEEAEEAREEL 203
Query: 1008 VEKLTFRNELQCTVLEVKVIEGHGTTIDVV 1037
+E L E+ ++E K +EG T + +
Sbjct: 204 IETLA---EVDDELME-KYLEGEEITEEEI 229
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 7 IIAHVDHGKTTLVDA-------------LLKQSG-TFRENEEVGERVMDSNDLERERGIT 52
Query: 848 -LKANATLKVPG--LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
L N + + +IDTPGH F R + D +L+VD G PQT L
Sbjct: 53 ILAKNTAITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 112
Query: 905 LKMRNTEFIVALNKVDR 921
+ IV +NK+DR
Sbjct: 113 ALEAGLKPIVVINKIDR 129
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
DTPGHE F+ R D A++V+D G+EPQT++ + ++R+ +NK+DR
Sbjct: 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145
|
Length = 528 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-06
Identities = 56/306 (18%), Positives = 116/306 (37%), Gaps = 36/306 (11%)
Query: 259 VNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEP 318
V E + E E+ E T + + GG E E E + + +++ E + P
Sbjct: 635 VAEAEHTGERTGEEGERPTEAEGENGEESGGEA--------EQEGETETKGENESEGEIP 686
Query: 319 IIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQ-QSGDSSIVESD 377
++K + + + + ++ + E + ++ G D + ++G+ D
Sbjct: 687 ---AERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Query: 378 DFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQP 437
+ +GE K + E E R E + E + E E +G E +++
Sbjct: 744 E---GEGEAEG------KHEVETEGDRKETEHEGETEAEGKEDE-DEGEIQAGEDGEMKG 793
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
E + + EK+E + + + K++ AE++ + K + +
Sbjct: 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDE-KGV 852
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
G S G + + +E EE ++ EEEE +EEEE + E L +
Sbjct: 853 DGGGGSDGGDSE-------------EEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWP 899
Query: 558 EAKRRK 563
E ++++
Sbjct: 900 ETRQKQ 905
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 40/147 (27%), Positives = 80/147 (54%), Gaps = 16/147 (10%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E EE A ++ KKE E KK A A E+ + ++E E + + +++ +K+ K+
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF-EKELRERRNE--LQKLEKR 90
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ + +E L R+ E E+++ E E+ KE+E ++ +ELE++ EE + E++ ++L +
Sbjct: 91 LLQKEENLDRKLELLEKREEELEK---KEKELEQKQQELEKKEEELE-ELIEEQLQELER 146
Query: 574 KKQEGKLLTGKQKEEARR--LEAMRNQ 598
++G EEA+ LE + +
Sbjct: 147 -------ISGLTAEEAKEILLEKVEEE 166
|
Length = 520 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 456 KEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET---KKNDGKSKGPEKKMSK 512
K+ K +K +EK+K+++ AE +Q+ E E +K +K K K
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E + ER +EE + R +E E K+L++ +++ EE +R++++K++E+
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 573 KKKQ 576
+K++
Sbjct: 216 RKQK 219
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 49/273 (17%), Positives = 112/273 (41%), Gaps = 25/273 (9%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +KE E+ E + EE+ LE++ EL +E + +++ ++ E
Sbjct: 235 KELRKELEELEEELSRLEEE-LEELQEEL------EEAEKEIE---------ELKSELEE 278
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E ++ + KE+ +E + + E ++ ++E E ++ + K + + ++
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Query: 514 VREMQ---EALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+ E + E L + E K E EE+L EE + L E R+ + + + +
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKK------ 624
L + K+E + L + + + RLE ++ + L E + + +
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458
Query: 625 KSAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657
+ + + ++ ++ EKE E L+
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLD 491
|
Length = 1163 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 7e-06
Identities = 55/251 (21%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 42 LTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKN 101
LT E EEE K G + + G+E EE + +K G +
Sbjct: 159 LTAEEAEEEMKRRKKTANGFQLMMMKAAKNGPAAFGDEDEETE--------GEKGGGGRG 210
Query: 102 GGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFA 161
+ +G + D +D ++ SK K LA K + KKG K G
Sbjct: 211 KDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG--KRGGDDD 268
Query: 162 AAAFDAVDG---GSESEVIDDDHSVEESDDDDDDVV--EKSKKGGKKKSGTTGFSASAFD 216
A +D+ DG G E + I D + ++ +D + E K ++ + S
Sbjct: 269 ADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEES----- 323
Query: 217 LLDDEDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPI 276
+E+++ E + + K KK+ +S + +D D D +D
Sbjct: 324 ---EEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD------SGDDSDDSDIDGEDSVS 374
Query: 277 TFTDKKKKSNK 287
T KK+K K
Sbjct: 375 LVTAKKQKEPK 385
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 8e-06
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
KG +++ K+ + +E ++ +ER K+ E+ERL K +E++K+ EE E+QA+ ++++
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL-KAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E+ ++ ++K++ + K EA +L+A K E A + +
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA--KKKAEEAAKAAEEAKAKAEAAAA 192
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADA 683
KK A +A A + E+K K ++K E E +K ++ + A
Sbjct: 193 KKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAA 252
Query: 684 PKENEVEEEDD 694
++ DD
Sbjct: 253 ERKAAAAALDD 263
|
Length = 387 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 9/63 (14%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVALN 917
DTPGHE +T + G+ CD+AIL++D G+ QT I + LL +++ +VA+N
Sbjct: 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIAT--LLGIKH--LVVAVN 168
Query: 918 KVD 920
K+D
Sbjct: 169 KMD 171
|
Length = 474 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 10/298 (3%)
Query: 380 KVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPE 439
K++ E V + K K + ++ E E+ E + ++++ + P+
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKK-KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
P + A EK +EKE+ K ++ + +E+EK+++ A + K K + K+
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ K + + +E + +E ++ E EE + + E
Sbjct: 190 PPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRS 249
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRP 618
+ KK + + +E ++R E L P + A +
Sbjct: 250 SSSLKKPDPSPSMASP---------ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK 300
Query: 619 KYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ + Q G + K ++++ + ++E + V GE +
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDG 358
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 43/289 (14%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
+ K+K + + + E+ + L + ++E+++ E + + + E
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKE 274
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
++EE ++++ K KE++ + + +++ + + K+++ + K EK++ K+
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 514 VREM-----QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
E+ + K E ++ E+ E+L+++ E+ + +++ E + K K
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
E+ L+ K E + E + + E + + + + + +E+ + T++K
Sbjct: 395 EEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEK--- 451
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEK 677
+ + K + + + E + ET+ V+ E L +
Sbjct: 452 --------EELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLL 492
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 178 DDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASA--FDLLDDEDEDVREDKDEEDEP 235
DD ++ +D D+ K KK K+ DD DE +D D+E
Sbjct: 224 DDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGRE 283
Query: 236 VIFTDKKKKS-------KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKG 288
+ S + + +++D +E ++E +E KK K K
Sbjct: 284 EDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Query: 289 GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSS 337
+ + + D +++ DD + D D ED + T KK+K ++ V S
Sbjct: 344 LKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDS 392
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 50/312 (16%)
Query: 324 KKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNK 383
KKK+ K KK + S E+L + V P S V K + S V ++ +
Sbjct: 55 KKKRRKKLKKPLKSD-EILENRSKV----PAPSVKKRHVKKKSKKKKSKQVSRK--ELLR 107
Query: 384 GEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEK---ILAELGQGPAPQEEKVQV-QPPE 439
+ +A+ K K K + EE+ + +L + Q K V P
Sbjct: 108 LKKLARGKKGGKAKLLNASKDNYDLWGEEEPPDTPKWPKKDLAEHTLEQVAKKTVKTAPI 167
Query: 440 PVAPPDAA--------------------DEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
+A E + EE ++E A KK+++ + E++K
Sbjct: 168 SLAANGKPVPAVEVPHAGASYNPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKM 227
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE---------ER 530
A A + +E +DG+ + ++ + E + + + E+
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEK 287
Query: 531 KKREEEERLRKEEEERKRLEELER---------QAEEAKRRKKEKEKEKLLKKKQEGKLL 581
+++E E ++E++ +K+L +L R Q E+A+ RKKE+ KE+ KKK + + L
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKL 347
Query: 582 TGKQKEEARRLE 593
GK K LE
Sbjct: 348 -GKHKYPEPPLE 358
|
This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 437 PPEPVAPPDAA---DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEA 493
P A D ++ KK KKE+E++KK A +KQ+ +E
Sbjct: 30 EPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQR-AAEQ 88
Query: 494 VETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLE-EL 552
K+ + ++ + ++A K+AEE++K+ EE + ++ E + + E E
Sbjct: 89 ARQKELEQRAAAEK--------AAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Query: 553 ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
E++A+E +++ E+E + + + K K+K EA
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 36/142 (25%)
Query: 799 IMGHVDTGKTKLLDCI--------------RGTNV-----QEGEAGGITQQIGATYFPAE 839
I+ H+D GKT L + I GT V QE E GIT + AT +
Sbjct: 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQER-GITIESAATSCDWD 71
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
N R + +IDTPGH FT R + D A++V D + G++PQT
Sbjct: 72 NHR----------------INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE 115
Query: 900 ESLNLLKMRNTEFIVALNKVDR 921
++ +NK+DR
Sbjct: 116 TVWRQADRYGIPRLIFINKMDR 137
|
Length = 687 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-05
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
E+E E+KA A A + + E +E KK + + +K + + +E Q+A+ K+
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE-EDKLLEEAEKEAQQAIKEAKKEA 586
Query: 529 ERKKREEEERLRKE---------EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
+ +E + + E RKRL + + E+ K KK+KEK++ LK E K
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK--KKQKEKQEELKVGDEVK 644
Query: 580 LLTGKQK 586
L+ QK
Sbjct: 645 YLSLGQK 651
|
Length = 782 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 39/217 (17%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 453 EEEKEESAASKKKKKKKEKEKEK-KAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
+ E ++ +K+ E E+E ++ A ++++ + E ++N K++ +++
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
KQ +++Q RL+ E+R++LE + Q+ +A +++ + +L
Sbjct: 144 KQAQDLQ------------------TRLKTLAEQRRQLEA-QAQSLQASQKQLQASATQL 184
Query: 572 LKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ + KL + + ++EA+ L N A+ L A Q + Q
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQI-SQK 243
Query: 632 NGAVPLKEDSI---ESKEKEQEKQETLLEVDVGETEK 665
+ + + I E + + E + LE +V + E
Sbjct: 244 AQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
|
Length = 499 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 799 IMGHVDTGKTKLLD--CIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLK 855
I+ H D GKT + + + G +Q G G Q A E ++R + + ++
Sbjct: 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISI-TTSVMQ 74
Query: 856 VP--GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
P LV +DTPGHE F+ R D ++V+D G+E +T + + + ++R+T
Sbjct: 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP 134
Query: 912 FIVALNKVDR 921
+NK+DR
Sbjct: 135 IFTFMNKLDR 144
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-05
Identities = 20/143 (13%), Positives = 56/143 (39%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++G E K S+ ++++ +KE+ K + A A ++ E K + E+
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
A EA + K+ ++K+ + +++ + K + K
Sbjct: 85 AAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRG 144
Query: 569 EKLLKKKQEGKLLTGKQKEEARR 591
+ +++ ++K++ ++
Sbjct: 145 KGGKGRRRRRGRRRRRKKKKKQK 167
|
Length = 746 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 5/195 (2%)
Query: 407 RTAQEEDDLEKILAELGQGPAPQ-EEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
R ++ +K + + EE Q E E++ +E+++ A +K
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE--KKMSKQVREMQEALAR 523
+ + E++++++ A AAAE K++ ++ + K K KK +++ + E
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKA 185
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTG 583
+ EA KK+ E E E+ + E + E K +EK KKK K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKA--EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 584 KQKEEARRLEAMRNQ 598
K A+ E
Sbjct: 244 KAAAAAKAAERKAAA 258
|
Length = 387 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
DTPGHE F+ R D A++V+D G+EPQT + + + ++R+T +NK+DR
Sbjct: 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDR 143
|
Length = 526 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 34/120 (28%)
Query: 884 AILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943
+L++D HG P +E L L+ F++ L K D+L
Sbjct: 85 VVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKL--------------------- 123
Query: 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003
++E L +I +L ++ S+ G GI +L L+ +W
Sbjct: 124 KKSELAKVLKKIKEELNL-------------FNILPPVILFSSKKGTGIDELRALIAEWL 170
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 13/273 (4%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
E K S + K+ +K + A + GK E E ++ + K ++K
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP--- 124
Query: 514 VREMQEALARRKEAEE-RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+E + ++EA+E R +E+E+ K+ EE + EE +++ + + +K +K
Sbjct: 125 -KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKP 183
Query: 573 KKKQEGKLLTGKQKEEARRLEA-----MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
K++ KQ++ AR + D+E + + ++S+
Sbjct: 184 PNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSS 243
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
+ LK+ E +E+ + + + +P P+
Sbjct: 244 EISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPA---PPRVK 300
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEE 720
E D + K +V L K + D+++
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDD 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 511 SKQVREMQEAL-ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+++ E+ +L +E E+ K EE E L KE E K EELE + E+ +E+E +
Sbjct: 515 KEKLNELIASLEELERELEQ--KAEEAEALLKEAE--KLKEELEEKKEKL----QEEEDK 566
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHH 629
L + ++E + + K+EA + + L KG E A
Sbjct: 567 LLEEAEKEAQQAIKEAKKEADEIIK-ELRQLQKGGYASVKAHEL-----------IEARK 614
Query: 630 QANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEV 689
+ N A KE + K+K++EKQE E+ VG+ K L++ +K E+ P + E
Sbjct: 615 RLNKANEKKE---KKKKKQKEKQE---ELKVGDEVKY-----LSLGQKGEVLSIPDDKEA 663
Query: 690 EEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPR 741
+ + + V + D E+ + KK K+ P PR
Sbjct: 664 IVQA------------GIMKMKVPLS-DLEKIQKPKKKKKKK-PKTVKPKPR 701
|
Length = 782 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-05
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 45/148 (30%)
Query: 862 IDTPG-HESFTNL-----RSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+DTPG H+ L ++ S L D+ + VVD + P L LK T I
Sbjct: 58 VDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI 117
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
+ LNK+D +K + L+ ++ +L E E
Sbjct: 118 LVLNKIDL---------------VKDKE---------ELLPLLEELSELMDFAE------ 147
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
IVP SA+ G+ + +LL ++ +
Sbjct: 148 -------IVPISALKGDNVDELLDVIAK 168
|
Length = 292 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++ EE K+E+ KK+ + KE+ K A E K++ ++ + + ++
Sbjct: 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR 94
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQA----EEAK---- 560
KM ++ + + KE ++K +E+ EE ++ EELER + EEAK
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILL 154
Query: 561 ---RRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
+ E KL+K+ +E + KEEA +
Sbjct: 155 EEVEEEARHEAAKLIKEIEE------EAKEEADK 182
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K ++++K+KE+ +E ++ ++ L +L + + K Q Q + A
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEK----ERLKAQEQQKQAEEAEKQA 127
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ ++E++ A+ ++KKK E K K AA AA + + K +A E K +
Sbjct: 128 QLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK----AAEEA 183
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
K ++ ++A A K A E+ K E E + + E++ EE ++ K + +
Sbjct: 184 KAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 568 KEKLLKKKQEGK 579
K K E K
Sbjct: 244 KAAAAAKAAERK 255
|
Length = 387 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-05
Identities = 59/267 (22%), Positives = 118/267 (44%), Gaps = 5/267 (1%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKV 451
K+ + K++ R++ A++ + K AE+ + EK + P + A +
Sbjct: 5 KDLEDLKKEAARRAKEEARKRL-VAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRA 63
Query: 452 GEEEKEESAASKKKKKKKEKE--KEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKK 509
K ++AA K+K++ +E +E+KA A A A + K+ A+ +K +G + E++
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 510 MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+ + A + A ++KRE E + +EEEE + + + A AK + K+
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQ 183
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKK--KSA 627
K + + + +T ++K +A+ A + A + + + K +A
Sbjct: 184 KAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAA 243
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQET 654
+A A K E K++E+ KQE
Sbjct: 244 KAKAAAAARAKTKGAEGKKEEEPKQEE 270
|
Length = 430 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 6e-05
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L + E I LNK+D
Sbjct: 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKID 137
|
Length = 600 |
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 7e-05
Identities = 55/309 (17%), Positives = 105/309 (33%), Gaps = 35/309 (11%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKK-- 466
A+ E+ EK+ +G + +KV Q P+ AP + E EE+ S +
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 467 ------KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND---GKSKGPEKKMSKQVREM 517
K K + KK A AAA E +++ + ++ + + KM + V
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETV--- 1289
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR-------KKEKEKEK 570
+A+ R+ A +K + +++ AE K++ +K +
Sbjct: 1290 -KAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKP 1348
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
K+ G + + L M A GI +K+ R KK +
Sbjct: 1349 PAAAKKRGP---ATVQSGQKLLTEMLKPAEAIGIS---PEKKVRKMRASPFNKKSGSVLG 1402
Query: 631 ANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVE 690
E S +++ + ++ ++ V E+E
Sbjct: 1403 RAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDS-------ESESA 1455
Query: 691 EEDDDDDEE 699
++ D DD+E
Sbjct: 1456 DDSDFDDDE 1464
|
Length = 1465 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 10/207 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND--GKSKGPEKKM 510
E++K+ +++ +E E + + D+ + +E K + + + E ++
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 511 SKQVREMQEALARRKEAE---ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK--E 565
+ E++E +R +E E E + + + + +E LE + E + R++ +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
Query: 566 KEKEKLLKKKQEGKL--LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E E+LLKK +E +L L + +E LE ++ + L +E
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQE 650
++ Q + E E+ E E
Sbjct: 481 ERE-LAQLQARLDSLERLQENLEGFSE 506
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 44/244 (18%), Positives = 94/244 (38%), Gaps = 19/244 (7%)
Query: 386 VVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPD 445
+ K +K+ + + + LEK L L A E ++
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI---------ET 85
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
A D K ++ + A + +E+E+ ++ A AA ++ G++ + ++
Sbjct: 86 ADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA-LQRSGRNPPPALLVSPEDAQR 144
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL--ERQAEEAKRRK 563
+++ + A A R +A + ++ + E+ L L E++A++AK +
Sbjct: 145 -SVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E++K L + +L ++K E R R L I + + AA R
Sbjct: 204 LLEERKKTLAQLNS-ELSADQKKLEELRANESR---LKNEI--ASAEAAAAKAREAAAAA 257
Query: 624 KKSA 627
+ +A
Sbjct: 258 EAAA 261
|
Length = 420 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANATLK 855
+GHVD GKT L I T V ++ GA + I E+ R + N
Sbjct: 8 IGHVDHGKTTLTAAI--TKVL-------AKKGGAKAKKYDEIDKAPEEKARGITINTAH- 57
Query: 856 VPGLLV-----------IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
V +D PGH + G+ D AILVV G PQT E L L
Sbjct: 58 -----VEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL 112
Query: 905 LKMRNTE-FIVALNKVD 920
+ +V LNK D
Sbjct: 113 ARQVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 23/202 (11%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ K + + + ++E E K S A++ K +E +
Sbjct: 70 KLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELL 129
Query: 486 KQQGKSEAVET-----------KKNDGKSKGPEK----------KMSKQVREMQEALARR 524
K+ V+ K D E ++SK++ E++
Sbjct: 130 KETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEE 189
Query: 525 KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E ++KREE + EEE RLE E E+ R + E+EKE+L KK +E KL
Sbjct: 190 LERALKEKREELLS-KLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE-KLRQEL 247
Query: 585 QKEEARRLEAMRNQFLAKGIPL 606
+++ + ++N+ + I L
Sbjct: 248 ERQAEAHEQKLKNELALQAIEL 269
|
Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-05
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
ES K+ ++ ++E +KK A A+ K + + ++++ + K E K + +
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
++ AE +K+ E+ ++ ++ + + L+ + +A + K+ K EKE K+ +
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
K K++ A L+ + Q A+ P + S P Y K
Sbjct: 327 QK----KREPVAEDLQKTKPQVEAQ--PTSLNEDAIDSSNPVYGLK 366
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 376 SDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQV 435
+ + V+ E++ + K+ + K S +EE E+ E + + E+
Sbjct: 10 AKELGVSSKELLEK----LKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAA 65
Query: 436 QPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVE 495
E A +AA EE E +AA++ + E E + A AAA ++ +
Sbjct: 66 AEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKG 125
Query: 496 TKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE 551
K K K + K+ + + RR+ R+K++++++ ++ + E
Sbjct: 126 PKPKKKKPKRKAARGGKRGKG-GKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180
|
Length = 746 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 15/267 (5%)
Query: 469 KEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEA 527
KE+ + A A D +G +EA T + G+ + + E A ++
Sbjct: 613 KEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGE 672
Query: 528 EERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK-------KQEGKL 580
E K E E E + ++ E E +A+EA + + + +E + + EG++
Sbjct: 673 TETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEI 732
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
TG++ EE + + K GD++ + + + K + G + ED
Sbjct: 733 ETGEEGEEVE--DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE--GEIQAGED 788
Query: 641 SIESKEKEQEKQETLLEVDVGETEKVE-EGESLTVEEKPEIADAPKENEVEEEDDDDDEE 699
E K E + + E + EK E EG+S T + E+ D E E+ E+ + ++
Sbjct: 789 -GEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQ 847
Query: 700 WDAKSWDDVNLNVKGAFDDEEADSEPE 726
D K D + G ++EE + E E
Sbjct: 848 -DEKGVDGGGGSDGGDSEEEEEEEEEE 873
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 64/325 (19%), Positives = 130/325 (40%), Gaps = 45/325 (13%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E A SK K++K+E E+ + ERT + + LE +L EL +
Sbjct: 162 EEAAGVSKYKERKEEAER-KLERTEENLERLEDLLEELEK-------------------- 200
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+ EK E A K ++ ++ K + ++ A ++ + E E ++ + +
Sbjct: 201 --------QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK 564
+++ +++ E ++ + K E + E EE + E ++ +EELE + + R +
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312
Query: 565 EKE-------------KEKLLKKKQEGKLLTGKQKEEARR---LEAMRNQFLAKGIPLPT 608
E E KEK+ K+E + +E + LE + + K L
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Query: 609 GDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+E + + ++ + + + IES E+ E+ LE E +++E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 669 GESLTVEEKPEIADAPKENEVEEED 693
E E+ + +E E + E+
Sbjct: 433 ELEELQTELEELNEELEELEEQLEE 457
|
Length = 1163 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-04
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK + K KE E++A ++ K EA KK E + + +E E
Sbjct: 26 KKIAEAKIKEAEEEAKRI-----LEEAKKEAEAIKK--------EALL--EAKE--EIHK 68
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKE--KEKEKLLKKKQEGKL 580
R E E+ + E + E+ ++ E L+R+ E ++R++E K++++L +K+QE +
Sbjct: 69 LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE- 127
Query: 581 LTGKQKEEARRLEAMRNQFL 600
K++EE L + Q L
Sbjct: 128 ---KKEEELEELIEEQLQEL 144
|
Length = 520 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 799 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT-- 853
I H+D GKT + I G + GE AT E +ER + + AT
Sbjct: 15 ISAHIDAGKTTTTERILFYTGRIHKIGE----VHDGAATMDWMEQEKERGITITSAATTV 70
Query: 854 -LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
K + +IDTPGH FT R + D A+ V+D + G++PQ+
Sbjct: 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR 130
Query: 913 IVALNKVDR-----LYGWKTCRNAPIVKAIKQQ-NTDVQNEFNMRLVQIVTQLKEQGMNT 966
I +NK+D+ L + A+ Q ++ F ++ +V
Sbjct: 131 IAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFI-GVIDLVEM-------- 181
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKV 1026
+ Y+ N D+G + IP LL + ++ +VE + +E L K
Sbjct: 182 KAYFFNGDKGTKAIE--------KEIPSDLLEQAKELRENLVEAVAEFDE----ELMEKY 229
Query: 1027 IEGHGTTIDVV---LVNGVLHEGDQIVVCG 1053
+EG TI+ + + GVL+ V+CG
Sbjct: 230 LEGEELTIEEIKNAIRKGVLNCEFFPVLCG 259
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 801 GHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIG---ATYFPAENIRER---TRELKAN 851
GHVD GKT L + G E GI+ ++G A + T E
Sbjct: 11 GHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCP 70
Query: 852 ATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK 906
LL +D PGHE+ G+ L D A+LV+ +PQT E L L+
Sbjct: 71 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE 130
Query: 907 MRNTE-FIVALNKVD 920
+ + ++ NK+D
Sbjct: 131 IIGIKNIVIVQNKID 145
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 68/253 (26%)
Query: 799 IMGHVDTGKTKLLDCI---------RGTNVQEGEA----------GGITQQIGATYFPAE 839
I+ HVD GKT L + + G+ V +G GIT F E
Sbjct: 4 ILAHVDAGKTTLTESLLYTSGAIRELGS-VDKGTTRTDSMELERQRGITIFSAVASFQWE 62
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+ + + +IDTPGH F R + D AILV+ + G++ QT
Sbjct: 63 DTK----------------VNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR 106
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ---------------QNTDV 944
LL+ N I+ +NK+DR + + IK+ N
Sbjct: 107 ILFRLLRKLNIPTIIFVNKIDRA---GADLEK-VYQEIKEKLSPDIVPMQKVGLYPNICD 162
Query: 945 QNEFNMRLVQIVTQLKEQGM----------NTELYYKNKDRGETFNIVPT---SAISGEG 991
N + ++ V + ++ + EL + R + ++ P SA+ G G
Sbjct: 163 TNNIDDEQIETVAEGNDELLEKYLSGGPLEELELDNELSARIQKASLFPVYHGSALKGIG 222
Query: 992 IPDLLLLLVQWTQ 1004
I +LL +
Sbjct: 223 IDELLEGITNLFP 235
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 915
V DTPGHE +T G+ D+AI++VD G+ QT I S LL +R+ ++A
Sbjct: 108 VADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIAS--LLGIRH--VVLA 163
Query: 916 LNKVDRLYGW 925
+NK+D L +
Sbjct: 164 VNKMD-LVDY 172
|
Length = 632 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 58/274 (21%), Positives = 88/274 (32%), Gaps = 49/274 (17%)
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL----LKKKQEGK 579
+K+AEE K R E + R E E+ R ++ AE + K+ L KK +
Sbjct: 445 KKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQ 504
Query: 580 LLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKE 639
+ K + AA + K Q + + A QA A K+
Sbjct: 505 PIVIKAGARPDNSAVI-----------------AAREARKAQARARQAEKQAAAAADPKK 547
Query: 640 DSIE-----SKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
++ +K K+ +Q E EE + IA A K + ++
Sbjct: 548 AAVAAAIARAKAKKAAQQAA-------NAEAEEEVDPKKAAVAAAIARA-KAKKAAQQAA 599
Query: 695 DDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKA 754
+ E D V A A ++ PR AA A+A KA
Sbjct: 600 SAEPEEQVAEVDPKKAAVAAAI--ARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKA 657
Query: 755 IPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQA 788
RK + EPE PK+A
Sbjct: 658 -------------RKAAQQQANAEPEEAEDPKKA 678
|
Length = 695 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 39/278 (14%), Positives = 75/278 (26%), Gaps = 42/278 (15%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
E QEE K++ K K ++ K ++ E+ ++ K +
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS-----SADKSKKASVVG 1196
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
N+ + E + DK D+ + + +K K
Sbjct: 1197 NSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSS----------------- 1239
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+S+ + S E++D+ D + K K SA
Sbjct: 1240 ----VKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPK-----RVSAVQYSPPPPSK 1290
Query: 225 VREDK----DEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTD 280
+ + + P KK+ K
Sbjct: 1291 RPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS----- 1345
Query: 281 KKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEP 318
+ S R R D + ++DDD + D E+++
Sbjct: 1346 ASQSSRLLRRPRKKKSD--SSSEDDDDSEVDDSEDEDD 1381
|
Length = 1388 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 27/221 (12%), Positives = 73/221 (33%), Gaps = 11/221 (4%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ AEE K++ ++ K + + +E ++A E+K++ E+ + L+
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
K + + + + AK K+ K + +
Sbjct: 61 GMVKDTDDATESDIPKKKTKT---AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
I+ + + + + D+ + + ++ + +E + D E+E ++E +
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Query: 696 DDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736
++ D + +D+ K +A
Sbjct: 178 LEKLSDDDDFVWD--------EDDSEALRQARKDAKLTATA 210
|
Length = 509 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKA--AAAAAAEDKQQGKSEAVETKKNDGK 502
+ E EEK E + + ++E E+ +K A A +Q K E N
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL-- 314
Query: 503 SKGPEKKMSKQVREMQEALARRKEAEERKKR--EEEERLRKE-EEERKRLEELERQAEEA 559
E+++ + +++E ++ E E E+ E L++E E LEELE + EE
Sbjct: 315 ----ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ R +E E++ L + + L + +E + + E R +
Sbjct: 371 ESRLEELEEQ-LETLRSKVAQLELQIASLNNEIERLEAR------------LERLEDRRE 417
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
++ + LKE E +E E+E +E E++ E E E L E
Sbjct: 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 34/276 (12%)
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
+ + EEE EE ++ +++ +E E++ + A K + + E +E K+
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR------- 788
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKE 565
+ +QE L +E E +R + R+ E +R E LE++ EE + +E
Sbjct: 789 ---------QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839
Query: 566 KEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
E EKL + ++E + L + +E LE + + +E + + + +K+
Sbjct: 840 LE-EKLDELEEELEELEKELEELKEELEELEAEK-----------EELEDELKELEEEKE 887
Query: 626 SAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPK 685
+ E + ++E EK LE + E++E EE E +
Sbjct: 888 ELEEELREL----ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL 943
Query: 686 ENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEA 721
E E+E E + +EE ++ VNL +++ E
Sbjct: 944 ETELEREIERLEEE--IEALGPVNLRAIEEYEEVEE 977
|
Length = 1163 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 53/311 (17%), Positives = 114/311 (36%), Gaps = 36/311 (11%)
Query: 392 KNKKKKKEKEKPRSERTAQEE---DDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+ +KKEKE + + T ++ +DL+K L + QEE + + +
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEE----QEEVEEKEIAKEQRLK---- 1159
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+ + K +K K K+KEKK ++A + K+ + +D K K +K
Sbjct: 1160 -------SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+K + + + ++EE+ K ++ + + ++ ++
Sbjct: 1213 PDNK-----------KSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
L K EGK ++ A + G + +K+ + + S
Sbjct: 1262 SDDLSK--EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLA 1319
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
K+ + + K K + KQ + + ++ + E+ D E +
Sbjct: 1320 ALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED-----DDDSEVD 1374
Query: 689 VEEEDDDDDEE 699
E++DD+D+E
Sbjct: 1375 DSEDEDDEDDE 1385
|
Length = 1388 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 881 CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940
D+A+LVVD G +E + LK R +IV +NK+D + ++ ++++
Sbjct: 86 TDLALLVVDAGVGPGEYELELIEELKERKIPYIVVINKID------LGEESAELEKLEKK 139
Query: 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000
+ SA++GEGI +L ++
Sbjct: 140 ------------------------------------FGLPPIFVSALTGEGIDELKEAII 163
Query: 1001 Q-----WTQKTMVEKL 1011
+ + + T+V L
Sbjct: 164 ELLPEDFEEPTIVGDL 179
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-04
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 800 MGHVDTGKTKLLDCI--------RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+GH GKT L + I R V++G + P E RER + +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTM-------DFMPEE--RERGISITSA 51
Query: 852 AT-LKVPGLLV--IDTPGHESFT-NLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLL 905
AT + G + IDTPGH FT + L D A++VV + G+EPQT
Sbjct: 52 ATTCEWKGHKINLIDTPGHVDFTGEVER---ALRVLDGAVVVVCAVGGVEPQTETVWRQA 108
Query: 906 KMRNTEFIVALNKVDR 921
+ I+ +NK+DR
Sbjct: 109 EKYGVPRIIFVNKMDR 124
|
Length = 668 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER +E
Sbjct: 10 IIAHVDHGKTTLVDAL-------------LKQSG-TFREREEVAERVMDSNDLEKERGIT 55
Query: 848 -LKANATLKVPGLL--VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
L N + G ++DTPGH F R + D +L+VD G PQT L
Sbjct: 56 ILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 115
Query: 905 LKMRNTEFIVALNKVDR 921
+ IV +NK+DR
Sbjct: 116 ALALGLKPIVVINKIDR 132
|
Length = 603 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 74/409 (18%), Positives = 147/409 (35%), Gaps = 13/409 (3%)
Query: 186 SDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDEDVREDKDEEDEPVIFTDKKKKS 245
D + K + K K S + L ++ E + E +
Sbjct: 627 EGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKE------LLAEQ 680
Query: 246 KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDED 305
+ K S + K E K + + + NE+
Sbjct: 681 ELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELK 740
Query: 306 DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTK 365
E+K K++E+E KK++ + K +S + L +EE E V +
Sbjct: 741 LLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKE-EKLKA 799
Query: 366 QQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQ- 424
Q+ ++ E + E + ++K KE+E +EE LEK+ E +
Sbjct: 800 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 859
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
++ +Q + E+ +++ ES K+K++KKE E+E + +
Sbjct: 860 LEEEITKEELLQELLLK---EEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEK 916
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
+ + + A E PE+ + ++ E ++ ++E EER KR +
Sbjct: 917 ENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNV 976
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLE 593
+ E E +E + K E +KE+L ++K+E ++ + +
Sbjct: 977 NLMAIAEFEE--KEERYNKDELKKERLEEEKKELLREIIEETCQRFKEF 1023
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090
GT + +G L +GD++V+ + +L H V G A
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAG---------ANA 51
Query: 1091 GIKITAQGLEHAIAG 1105
GI + GL+ G
Sbjct: 52 GIILAGIGLKDIKRG 66
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E+ K ++EK K K+ + A +++ + ++ PE K +
Sbjct: 53 EDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPS 112
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEK-EKLLKK 574
+ + AE + ++E + LR E +E K LE+ + +R E + K LK+
Sbjct: 113 EPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKR 172
|
Length = 424 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER-KRLEELERQAEEAKRRKKEK 566
++ ++V + +E + ++R+EE + +KEE+++ +R +L + + E +R+ +EK
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
Query: 567 EKEKLLKK 574
E++K +K
Sbjct: 315 ERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 38/142 (26%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 6 IIAHVDHGKTTLVD-------------ALLKQSG-TFRANEAVAERVMDSNDLERERGIT 51
Query: 848 -LKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT----IE 900
L N ++ G + +DTPGH F R G+ D +L+VD G PQT +
Sbjct: 52 ILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKK 111
Query: 901 SLNL-LKMRNTEFIVALNKVDR 921
+L L LK IV +NK+DR
Sbjct: 112 ALELGLKP-----IVVINKIDR 128
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 510 MSKQVREMQEALARRK---EAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR---- 562
+ +++ +M+E + R + E E E EE+L++EEEE + LE+ + EE RR
Sbjct: 10 LEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEE 69
Query: 563 --KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAK 602
E+E+E+L + E K +EE + EA Q +
Sbjct: 70 AAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQE 111
|
This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-04
Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 10/226 (4%)
Query: 375 ESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQ 434
E ++ + +K E+ + + KE ++ E+ QEE+ E + + +
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 435 VQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
E + K E+E ++ ++ +K+ KE E K A E++ + E +
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Query: 495 ETKKND------GKSKGPEKKMSKQVREMQEAL----ARRKEAEERKKREEEERLRKEEE 544
E + + +S+ + E++ + E ++ E+ + K+EE
Sbjct: 370 EQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEE 429
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEAR 590
+ E E + + +EKE+ + K L K+ E+
Sbjct: 430 LKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLL 475
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 37/217 (17%), Positives = 89/217 (41%), Gaps = 18/217 (8%)
Query: 382 NKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPV 441
+ + + + + +E E+ E + E E++ ++ ++
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL------ 356
Query: 442 APPDAADEKVGEEEKEESAASKKKKKKKEKEKEK----KAAAAAAAEDKQQGKSEAVETK 497
+E E E++ SA ++ ++ E +E+ +A A + ++ K E +
Sbjct: 357 ------EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + + ++++E++ L + E E EE + EE R RL+ELER E
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER--E 468
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
A+ +++ + EK L + ++ ++ + A
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
|
Length = 1163 |
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 11/225 (4%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKE-KKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
DA + E++ E A ++ + K E E ++ A AE ++ K ET+
Sbjct: 222 DAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAW 281
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERK-----KREEEERLRKEEEERKRLEELERQAEE 558
K ++ ++Q + E + ++A+ + K E +R ER++ ELE Q
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA-----RRLEAMRNQFLAKGIPLPTGDKEA 613
+++ ++ K G Q E A EA R + A ++E
Sbjct: 342 YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQ 401
Query: 614 ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
+ + K A QA E E + E E + L E
Sbjct: 402 VEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEA 446
|
Length = 548 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 27/268 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D +E + E+E+ E K+++ K K K K A+ + K E + K + KSK
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGK----ASKLRKPKLKKKEKKKKKSSADKSK 1190
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR-----EEEERLRKEEEERKRLEELERQAEEA 559
+ + + E + + +K +E++ +K + ++ ++ L+ + +
Sbjct: 1191 KASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ ++ ++ +EGK ++ A + G + +K+
Sbjct: 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPE 679
+ + S K+ + + K K + KQ + +
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ------------------ASASQSSRL 1352
Query: 680 IADAPKENEVEEEDDDDDEEWDAKSWDD 707
+ K+ +DDDD E D +D
Sbjct: 1353 LRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
|
Length = 1388 |
| >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 414 DLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEK 473
++ ++LA +G A + K A + ++ ++ AA KK +
Sbjct: 186 EIGRVLAAVGAANAKKAAKTPAAKSGA-KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKT 244
Query: 474 EKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKR 533
KAA A K+ K A KK K+ K +K + + A+ K+ +K
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ A+ KR K K+ +K+ KK+
Sbjct: 305 AGSKAKAT--------------AKAPKRGAKGKKAKKVTKKR 332
|
Length = 333 |
| >gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 6e-04
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 478 AAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE----ERKKR 533
A+ + +D++ + A +G G K + +++ A RK E E+K+
Sbjct: 401 ASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRI 460
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL-------LTGKQK 586
E ER +E ER+R+E +ER+ E +R ++E+ + L++ + +L L +
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRL 520
Query: 587 EEARR----LEAMRNQFLAKGIP 605
E+ARR L+ M N A G P
Sbjct: 521 EKARRNSYFLKGMENGLSAGGGP 543
|
Length = 1021 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-04
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELKANA----- 852
I+ H+D GKT L D N+ G AG I++++ G + + +E+ R + NA
Sbjct: 24 IVAHIDHGKTTLSD-----NLLAG-AGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 853 --TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
+ L+ IDTPGH F +R D AI+VV + G+ PQT L
Sbjct: 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE 137
Query: 909 NTEFIVALNKVDRL 922
N + ++ +NKVDRL
Sbjct: 138 NVKPVLFINKVDRL 151
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVG----------------EEEKEESAASKKKKKKK 469
P P E V P A + G EE K + + K + K
Sbjct: 541 PTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKP 600
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK---- 525
E++++++ D+ + + + +G+ E + +++ + Q A R
Sbjct: 601 ERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAE 660
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
E+ + ++E+++ + E +R+R +E + +EAK
Sbjct: 661 VTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAK 695
|
Length = 1068 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 28/85 (32%), Positives = 56/85 (65%)
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
Q R +E +ER+++EE++RL +EE +R+ EE R+ EEA+R+++E+ +EK K K++
Sbjct: 34 QAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRK 93
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAK 602
+ +++EE R++ + + A+
Sbjct: 94 AEEEEKQEQEEQERIQKQKEEAEAR 118
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 522 ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
RK + R+ EEEE++ K EE +R EE + + EE K+ ++E + KL ++Q KL
Sbjct: 257 VLRKVDKTRE--EEEEKILKAAEE-ERQEEAQEKKEEKKKEEREAKLAKLSPEEQR-KLE 312
Query: 582 TGKQKEEARR 591
++K++AR+
Sbjct: 313 EKERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-04
Identities = 43/255 (16%), Positives = 109/255 (42%), Gaps = 6/255 (2%)
Query: 294 SAFDLLENEDEDDDEKKDKDEEDEPIIFT---DKKKKTKSSKKTVSSFSEVLLDEENVVE 350
S D ++ D++++E++D+ EDE I D +++SS + +S +E+ + E
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Query: 351 DAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQ 410
+ S T+++ D S V+ FK+++ + ++ +++ ++ E Q
Sbjct: 167 EEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQ 226
Query: 411 EEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKE 470
++ + K + G G ++++ E P D+K + E + K+ +
Sbjct: 227 DDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVK 286
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
KE + K +D+Q+ + E + K + + + + E+
Sbjct: 287 KEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDK---VKLDEPVLEGVDLESPKELSSFEK 343
Query: 531 KKREEEERLRKEEEE 545
++ + ++++ + E+E
Sbjct: 344 RQAKLKQQIEQLEKE 358
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
| >gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 74/357 (20%), Positives = 128/357 (35%), Gaps = 67/357 (18%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL---------- 848
+ GHVD GK+ L+ + + +G+ + E R + ++
Sbjct: 122 VAGHVDHGKSTLVGVLVTGRLDDGDGA---TRSYLDVQKHEVERGLSADISLRVYGFDDG 178
Query: 849 ----------KANATLKVPG----LLVIDTPGHESF--TNLRSRGSGLCDIAILVVDIMH 892
+A V + +DT GHE + T +R D +LVV
Sbjct: 179 KVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD 238
Query: 893 GLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952
G+ T E L + IV + K+D + R +V+ I ++
Sbjct: 239 GVTKMTKEHLGIALAMELPVIVVVTKIDMV---PDDRFQGVVEEISAL---------LKR 286
Query: 953 V-QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
V +I +K+ K I TS+++GEG+ DLL K
Sbjct: 287 VGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL-DLLDEFFLLLPKRRR--W 343
Query: 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP- 1070
+ ++ + G GT + + +G+LH GD LL P
Sbjct: 344 DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGD---------------TVLLGPFKD 388
Query: 1071 --MKELRVKGTYLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGPDDDLEDVKE 1122
+E+ VK +HH ++ +A+ I I +G+E G+ V+ D + V+E
Sbjct: 389 GKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGM-VLSAGADPKAVRE 444
|
Length = 527 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-04
Identities = 36/169 (21%), Positives = 51/169 (30%), Gaps = 9/169 (5%)
Query: 502 KSKGPEKK--MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
K G E K S E ++EAEE K E EE E EE + E E
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ + E + EA + K K+ K +
Sbjct: 85 AAEAAAAAEAAARPAEDE-----AARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAAR 139
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+ K + + + K+K EK EV + ET V E
Sbjct: 140 GGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR--EVVIPETITVAE 186
|
Length = 746 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-04
Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 4/258 (1%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E + +E ++ KK E + K+ + E + + + +++
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEI 254
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ + + A+ K+ +EEE+ +K +EE +L E + +++ K E+ K
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Query: 573 KKKQEGKLLTGK-QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+K +E + K +KE + E + + E + + ++K +
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE---KPEIADAPKENE 688
K +S + K+E L + E E E EE K E + K E
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE 434
Query: 689 VEEEDDDDDEEWDAKSWD 706
EE + + + +
Sbjct: 435 ELEESLETKQGKLTEEKE 452
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
KK +K E ++A +++EAEE ++ E ++ K E ERK EELE + E+ K ++ K
Sbjct: 5 AKKRAKL--EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 567 EKEKLLKKKQE 577
E+E+ +K+QE
Sbjct: 63 EREEQARKEQE 73
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 12/204 (5%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
+ EE +GK K+L+ +D+D E + + + KKK K KN
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
K + G D D D+ DS D +G+ S + S
Sbjct: 255 LDDDK---KGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLS------ 305
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+ E E +D EE ++++ + K K KK G D D D+
Sbjct: 306 -PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN--GLDKDDSDSGDDS 362
Query: 225 VREDKDEEDEPVIFTDKKKKSKKS 248
D D ED + T KK+K K
Sbjct: 363 DDSDIDGEDSVSLVTAKKQKEPKK 386
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 8/210 (3%)
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
G Q+ + +K E+ EE + ++++ K+ EK+ A E
Sbjct: 58 GAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE--RLKAQE 115
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
++Q + + + + + +K + + ++ EA + AE K + E +K EE
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGI 604
K EE + +AE A KK+ E E ++ K K E + A + A+
Sbjct: 176 AAKAAEEAKAKAEAAA-AKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAE-- 232
Query: 605 PLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
A +K K K+A +A A
Sbjct: 233 ---KKKAAAKAKADKAAAAAKAAERKAAAA 259
|
Length = 387 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
EE A ++ KKE E KK A A E+ + ++E ++
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL-----------------ERE 70
Query: 514 VREMQEALARRKEAEERKKREEEERL-RKEEEERKRLEELERQAEEAKRRKKEKEK---- 568
++E + L R ER+ + EE L RK E K+ E LE++ +E ++K ++
Sbjct: 71 LKERRNELQRL----ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126
Query: 569 --EKLLKKKQEGKLLTGKQKEEARR--LEAMRNQ 598
E + ++++E + ++G +EEA+ LE + +
Sbjct: 127 LEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 8/188 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E EK A + KK E K A AAA + + K A P+
Sbjct: 463 EREKAAREA--RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVI 520
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
RE ++A AR ++AE++ + + R + ++A + + +E+
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK--AKKAAQQAANAEAEEEVDPK 578
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQAN 632
K + K K+ A++ + + K+AA + K K A QAN
Sbjct: 579 KAAVAAAIARAKAKKAAQQAASAEPE----EQVAEVDPKKAAVAAAIARAKAKKAEQQAN 634
Query: 633 GAVPLKED 640
D
Sbjct: 635 AEPEEPVD 642
|
Length = 695 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK ++ +EA+ + K E+K REE ER +++E+ER+R E ER+AE A +
Sbjct: 575 SKLAKKREEAVEKAKREAEQKAREEREREKEKEKERER--EREREAERAAK 623
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 465 KKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARR 524
K K++E+ +EK+ + + + ++ + + ++ +++ E++ + +
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 525 KEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
+ ER +RE +++RK+ +R+E LE++ EE K+R +E E++ +K L
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLEL 515
Query: 582 TGKQKE 587
+GK
Sbjct: 516 SGKGTP 521
|
Length = 652 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK+ K +EKE+E++ E K+ A E ++ E+K ++ RE + L
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERL---KALAEEEER--------ERKRKEERREGRAVLQ 77
Query: 523 RRKEAEERKKREEEERLRKEEEER----KRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
+ E E++++EE E +E E+ +R++E + + KR K++K +E++ + +E
Sbjct: 78 EQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEER 137
Query: 579 KLLTGKQKEEARRLEAMRNQFLAK 602
++KE R E ++ +
Sbjct: 138 IERKEEEKEREREEELKILEYQRE 161
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D E++ EE++ E+ ++K+KK +E ++ +++++ + E K + +
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQR- 160
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR----EEEERLRKEEEERKRLEELERQAEEAK 560
+K ++ E R++E E R +EE +EE + R + + + E +
Sbjct: 161 ---EKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKE 217
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEE-ARRLEAMRNQ 598
R+K+++E EK ++KQE + +Q EE RL+ R +
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 473 KEKKAAAAAAAEDKQQGKSEAVET-KKNDGKS-----KGPEKKMSKQVREMQEALARRKE 526
KE A A +KQ+ K + T ++N + + PE + + E+++ K
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPE--LHAENAEIKKTRTAEKN 341
Query: 527 AEE-RKKREEEERLRKEEE-ERKRLEELERQAEEAKRRKKEKE-KEKLLKKKQE 577
+ RKK ++R E E R+ +E A+ R+ + K+K L
Sbjct: 342 EAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASP 395
|
Length = 429 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E Q ++ EK ++E+ A++ ++ +K E A E K + +
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA-EAKAKAEAEAEKKAK 145
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+ A ++ EE K ++AA + KKK E +K+ +A A A AE K + K+E + K K+K
Sbjct: 146 EEAKKQAEEEAKAKAAA-EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEE 536
+ +K EA A ERK E E
Sbjct: 205 AAAEAAAKA---EAEAAAAAAAEAERKADEAE 233
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 522 ARRKEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
RRKE E + +R E R E E ++L+ LERQAE+A+R K+ K + + L+
Sbjct: 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELEL---- 227
Query: 579 KLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLK 638
LL + +E LE ++ + KEA + + + + +
Sbjct: 228 ALLVLRLEELREELEELQEEL-----------KEAEEELEELTAELQELEEKLEE----L 272
Query: 639 EDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD--- 695
+ E+E E+ + L E ++E+ + + E + +E E + E+ +
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 696 DDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAE 745
D+ + ++ +K + EA+ E +E++S + + E
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 5/157 (3%)
Query: 502 KSKGPEKKMSKQVREMQEALA----RRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ +KK +Q E+Q+ A R K+ E+ + +E++ + EE ++ + ++QAE
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK-QKQAE 135
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR 617
EA + K K + + K EA++ A + EAA+K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Query: 618 PKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
KK A + A K+ + + K
Sbjct: 196 AAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
|
Length = 387 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 24/176 (13%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
+++ E+ + E + L++ + EL + +E++ + +E++ E
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL-----------EELEEELEEA 805
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
E+ A ++ + +++ + + E+ ++ + + E ++ + + +++ +++
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
E++ ++ + + E+EE + E L EL+ + E+ + R +E E +
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921
|
Length = 1163 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 13/249 (5%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E KK+ + KE+ A + K E +K K + + + R
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
A + A ++KRE E + +EE+ + + + +A K+K + ++
Sbjct: 63 AAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEE 122
Query: 577 EGKLLTGKQKEEAR-RLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
E K A+ + A+ Q + ++E ++ K K +A +A A
Sbjct: 123 EKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAK---AKAAAAAKAKAAA 179
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
K+ + E+ E +E V E EK + K + A K+ + D
Sbjct: 180 LAKQKAAEAGEGTEE---------VTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDS 230
Query: 696 DDEEWDAKS 704
DE+ AK+
Sbjct: 231 GDEDAKAKA 239
|
Length = 430 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 36/201 (17%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 334 TVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKN 393
VS + ++ VVE + D V+ ++ D ES + + + + +
Sbjct: 168 NVSDVDTDSISDKKVVE--ALREDNEKGVNFRRDMTDLKERESQE-DAKRAQQLKEELDK 224
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +K + +++ +D+ +K E+ Q QE K +P + +P + D++V E
Sbjct: 225 KQIDADKAQQKADFA---QDNADKQRDEVRQ--KQQEAKNLPKPADTSSPKE--DKQVAE 277
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+K E ++ + KK ++E KA A + KQ+ K+ E + + +++ + +++
Sbjct: 278 NQKREIEKAQIEIKKNDEEA-LKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAED 336
Query: 514 VREMQEALARRKEAEERKKRE 534
+++ + + + + +
Sbjct: 337 LQKTKPQVEAQPTSLNEDAID 357
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 45/208 (21%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
++K E+E+ R + +++ E+ +A L Q+E+ + D +E +E
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRA----QQEEAE----------DEREEL--DE 203
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
+ + + ++K+++KEKE+ ++ Q+ + E +E K+ ++ +
Sbjct: 204 LRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEER------LQEERAEE 257
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK 574
+E + ++ +E ++E E+ R + E +R ELE+Q EE + R+ + +E+L
Sbjct: 258 EAERERMLEKQAEDEELEQENAEKRRMKRLEHRR--ELEQQIEEKEERRAAEREEEL--- 312
Query: 575 KQEGKLLTGKQKEEARRLEAMRNQFLAK 602
+EG+ L ++ E R+E R + L +
Sbjct: 313 -EEGERLREEEAERQARIEEERQRLLKE 339
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 443 PPDAADEKVGEEEKEESAASKKKKKKKE----------KEKEKKAAAAAAAEDKQQGKSE 492
P++ DE+ GE+E + KKKK+ K K+K+ AA + A + K
Sbjct: 65 EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEAL-ARRKEAEE-RKKREEEERLRKEEEERKRL- 549
+ K + +EA R KE E RKK + + R RKE+++ K L
Sbjct: 125 ERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELT 184
Query: 550 -EELERQAEEAKR-------RKKEKEKEKLLKKKQEGKLLTGKQKEE 588
EE +A+E +R R +E+E+E KKK + + L ++ E
Sbjct: 185 QEERLAEAKETERINLKSLERYEEQEEE---KKKAKIQALKKRRLYE 228
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|239667 cd03696, selB_II, selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 1271 IVLGVDVVEGIAKVGTPICIPQRDFIDIG---RIASIENNHKPVDTAKKGQKAAIKIAGS 1327
+V G V+ G KVG + I +G R+ SI+ + K V+ AK G + A+ + G
Sbjct: 17 VVTGT-VLSGSVKVGDKVEIL-----PLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGV 70
Query: 1328 NSEE 1331
++++
Sbjct: 71 DAKD 74
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. Length = 83 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.002
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCI---RGT-----NVQEG--EAGGITQQIGATYFPAE 839
E LR+ I+ HVD GKT L+D + GT QE ++ + ++ G T A+
Sbjct: 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITIL-AK 59
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
N + + + N ++DTPGH F R + D +LVVD G PQT
Sbjct: 60 NTAIKWNDYRIN---------IVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR 110
Query: 900 ESLNLLKMRNTEFIVALNKVDR 921
+ IV +NKVDR
Sbjct: 111 FVTKKAFAYGLKPIVVINKVDR 132
|
Length = 607 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 450 KVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEK 508
+ + EK + K+ K K +E + + ED + ++ E K+ + E+
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 509 KMSKQVREMQEALARR-KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ + EAL R E EE K+R EE + R E E LE L+ + EE +E
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL------RE 278
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
E+LL++ +E + + E LE + + + K KS
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGL-----------RALLEELEELLEKLKSL 327
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETL 655
+ E E+ E++ L
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNEL 355
|
Length = 908 |
| >gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA--AAAAAEDKQQGKSEAVETKKNDGK 502
D GEEE+ E+ ++KK ++K++KA A +K K +A K
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Query: 503 SKGPEKK 509
G KK
Sbjct: 449 PDGETKK 455
|
This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516 |
| >gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR) | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 29/231 (12%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K +KKK+EKEK R + ++ +A PA + V + PE P D
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSLGTESDEDIA-----PAQMVDIVTEEMPENALPSDED 148
Query: 448 DEKVGEEEK-------------EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
D+ + + E+ K + + K EK A + K+ K E
Sbjct: 149 DKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKK 208
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL--------RKEEEER 546
E +K K K KK + + + AL + +E L E +
Sbjct: 209 EKEKERDKDK---KKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDE 265
Query: 547 KRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN 597
+ E E + K +KK++ KEK KKK++ + + ++N
Sbjct: 266 PKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQN 316
|
This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 40/234 (17%), Positives = 96/234 (41%), Gaps = 20/234 (8%)
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTA-QEEDDL 415
G V T+ + + V ++ K + + A + ++++ +++ SE Q+E
Sbjct: 27 GSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLERLARREERRDERFSEALERQKEFKP 86
Query: 416 EKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK------------ 463
L + +E + + EE +E +K
Sbjct: 87 TSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEE 146
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
+K++KE E E++ + ++ G+ + K + + ++ + +
Sbjct: 147 CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLK 206
Query: 524 RKEA-------EERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+K+ E +KKREE ++ +EEE+R++ EE +R++ E + +++ KE+ +
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIE 260
|
Length = 431 |
| >gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
K+ + K+ K+KK + ++ ++E + + + +K +K+ + A+
Sbjct: 21 KRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAK 80
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++EAE+ K++EE E E++R E +++A EAK K+EK+
Sbjct: 81 KEEAEKEKEKEERFMKALAEAEKERAELEKKKA-EAKLMKEEKK 123
|
This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 3/165 (1%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSE--AVETKKNDGKSKGPEKKMSKQVREMQEA 520
+ + KE K E + KS VE ++ K + + + E +EA
Sbjct: 5 RVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEAR-KEEAKREAEEEAKAEAEEA 63
Query: 521 LARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL 580
A E E + + + E E R AE+ R E + KK K
Sbjct: 64 AAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
K K++ + +A R KG + +R K + +K
Sbjct: 124 KGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKP 168
|
Length = 746 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.003
Identities = 118/580 (20%), Positives = 244/580 (42%), Gaps = 42/580 (7%)
Query: 17 VAQGGGKSKKKAVVIDDDEYSIGTELTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSK 76
A+ ++ +++ + EE +++ K ++ KK ++ +AE+D K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 77 GEEGEENDAEAIVFTGKKKSKGKKNGGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKY 136
+E ++ A KKK+ K K A E + A++ D++ K + K
Sbjct: 1407 ADELKKAAAA------KKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 137 VSLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESEVIDDDHSVEESDDDDDDVVEK 196
A K K +E K K + A A +A E++ D+ D +K
Sbjct: 1459 AEEAKK-KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 197 SKKGGKKKSGTTGFSASAFDLLDDEDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFD 256
+++ K A D +E + D+ ++ E + ++KKK++++ K +
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
Query: 257 LLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEED 316
+ + + ++ K+ ++ E + +++K K + + ++ E+ E++ K E
Sbjct: 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
Query: 317 EPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVES 376
++KKK + KK +EEN ++ A + A + K+++ ++ E
Sbjct: 1638 LKKKEAEEKKKAEELKKA---------EEENKIKAA---EEAKKAEEDKKKAEEAKKAEE 1685
Query: 377 DDFK----VNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK 432
D+ K + K A+ ++ KKK+ +EK ++E + E++ KI AE + A +++K
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE-NKIKAEEAKKEAEEDKK 1744
Query: 433 VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSE 492
A + K EEEK++ A KK+++KK +E K+ A E ++ +
Sbjct: 1745 ------------KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE- 551
+E K + + +E + KE E+ +E + + EE E+
Sbjct: 1793 RMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKH 1852
Query: 552 -LERQAEEAKRRKKEKE--KEKLLKKKQEGKLLTGKQKEE 588
+ E + KE + KEK LK+ E ++ + E+
Sbjct: 1853 KFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK 1892
|
Length = 2084 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEE----DDLEKILAELGQGPAPQEEKVQVQPPEP 440
+ A+ + K+ +KE+ + ++ EE L++ AE A K + +
Sbjct: 95 KQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAK 154
Query: 441 VAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND 500
A A ++K E+ A+KK + +K+ E +AAA AAAE K++ ++EA + +
Sbjct: 155 RAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
K K + + + EA A ++A K E+ + E
Sbjct: 215 AKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
|
Length = 387 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 9/219 (4%)
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
E + + SEA+E +K K ++ +S+ R MQE E E ++ E+EE + E
Sbjct: 68 ERRDERFSEALERQKEF-KPTSTDQSLSEPSRRMQEDSG--AENETVEEEEKEESREERE 124
Query: 544 EERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKG 603
E + + + + R +E +KE+ + +E + EE +
Sbjct: 125 EVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTEN 184
Query: 604 IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIE----SKEKEQEKQETLLEVD 659
G + A + K K K Q A+ L+E + K E+E+Q E
Sbjct: 185 TFSRGGAEGAQVEAGKEFEKLK--QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEA 242
Query: 660 VGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDE 698
++ + EE L E + A+A ++ + ED ++
Sbjct: 243 DRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
|
Length = 431 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVV--DIMHGLEPQTIESLNLLK-MRNTEFIVALN 917
++D PGH F G+ D A+LVV D G+ PQT E + L + + + IVA+N
Sbjct: 88 IVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147
Query: 918 KVD 920
K+D
Sbjct: 148 KMD 150
|
Length = 425 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 502 KSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK KK+ K V + ++ +R+E ++ KK++ +KEEEE + E+ E + EE +
Sbjct: 404 GSKKATKKIKKIVEKAEK---KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 562 -RKKEKEKEKLLKKKQ 576
++EKE+E+ KKKQ
Sbjct: 461 EAEEEKEEEEEKKKKQ 476
|
Length = 482 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 2/147 (1%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+G P A A + ++ +A + K + AAAAA A
Sbjct: 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA 118
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQ-VREMQEALARRKEAEERKKREEEERLRKE 542
+ ++ + +G +K + + EA A E E ++R+E R R +
Sbjct: 119 ASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRR-RGD 177
Query: 543 EEERKRLEELERQAEEAKRRKKEKEKE 569
E+R+ E + +R + +++
Sbjct: 178 REDRQAEAERGERGRREERGRDGDDRD 204
|
Length = 672 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E+ + + ++ K+KEKE E+ + E +E + E K +
Sbjct: 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK-------EVKELE 234
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEE----EERKRLEELERQAEEAKRRKKEKE- 567
+++E E L + E+ E KR+ EE++R+ E E +K +EELE + +E K K++ E
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Query: 568 -------KEKLLKKKQEGKLLTGKQKEEARRLEA 594
E+ L + +E + + +EE +E
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
Length = 880 |
| >gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 46/200 (23%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKIL-AELGQGPAPQEEKVQVQPPEPVAPPDAADEK 450
+ +++K+E+ K R ++ +E E +E + + + + P A + K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 451 VGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKM 510
V + E++ K KKKK+K+K E +++ E E K + + K K
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKA 128
Query: 511 SKQV---------REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
+ + +++AL R+++ +++ K+E +ER K E+ K+ E +++ E K+
Sbjct: 129 LAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEK--KKAERQKKREENLKK 186
Query: 562 RKKEKEKEKLLKKKQEGKLL 581
RK +K+ +K K K++G++L
Sbjct: 187 RKDDKKNKKKKKAKKKGRIL 206
|
The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 65/352 (18%), Positives = 141/352 (40%), Gaps = 30/352 (8%)
Query: 365 KQQSGDSSIVESDDFKVNKGEVVAQTSKNKK-----KKKEKEKPRSERTAQEED--DLEK 417
K+ IV D V G V+ S +++E E+ + EE +LEK
Sbjct: 639 KKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
Query: 418 ILAEL---GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
LAEL + + E+++ + E A + + E E ++ + ++ E
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
Query: 475 KKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKRE 534
+A E ++ + E E + + + +++ ++++ ++EAL + E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 535 EEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
+ E +R+ ER+ E+ + + +E ++ + L + +E +E
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEE 870
Query: 595 MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
+ ++ A + ++ A R + + + + L+ + E +EK + +
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 655 L--LEVDVGE-TEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAK 703
L LEV + E++ E SLT+EE +E + +DD+EE +
Sbjct: 931 LEGLEVRIDNLQERLSEEYSLTLEEAE---------ALENKIEDDEEEARRR 973
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 27/136 (19%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
+++++ +E+ +E++ +++ ++EA E ++ +KK+ +++ E E
Sbjct: 86 RRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK-------QKKLREEIDEFNEERI 138
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLT 582
RKE E+ ++REEE ++ + + E+ EE ++ +KE+E +L +++
Sbjct: 139 ERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQE------ 192
Query: 583 GKQKEEARRLEAMRNQ 598
+ ++E L+ +R
Sbjct: 193 -EAEDEREELDELRAD 207
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
EK E +EE +K+ ++ E+E + A +++ + K E +E + + EK
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK-EK 551
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+Q++E L R ++ +E E LR ++ LEEL + +E K++ KE E+
Sbjct: 552 LQLQQLKEELRQLEDR----LQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
++ L + + E E L K ++ + + + K +
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVD 659
+ + E+ + +EK +E ++ E++
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELE 698
|
Length = 908 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.004
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 6/173 (3%)
Query: 423 GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAA 482
G A A AA + + E +AA + A AA+A
Sbjct: 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA 121
Query: 483 AEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE----AEERKKREEEER 538
E Q + G ++ + + E + A R E E R++ + E+
Sbjct: 122 PEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED- 180
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
R+ E ER E + + R + +E+ ++++ G+ G ++ RR
Sbjct: 181 -RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
Length = 672 |
| >gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
K E + K AE +REEEE L++E EER E+ ER E+A+ R+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 572 LKKKQEGKLLTGKQKEEAR 590
+ + E + +++EEAR
Sbjct: 431 FEDEDELEEAQPEEEEEAR 449
|
Length = 449 |
| >gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ K + E +T++ + GP + K R ++EAL RR A R KR E L +E
Sbjct: 121 KKKGLKEIEEEKTRRAGYRRTGPPSNLDK-KRTLREALKRRI-ALGRPKRRELRELEEEL 178
Query: 544 EERKRLEELERQAEEAKRRKK 564
E + LEE+ER + +
Sbjct: 179 EALEALEEIERLRALRAKIDR 199
|
Length = 401 |
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 454 EEKEESAASKKKKKKK--EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
KE + + + KEK +A A A + + + + K+ + + E+
Sbjct: 183 NSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQ 242
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKR 561
+ V+++ E + EAE K E+ER+ + E+E E + +AE ++
Sbjct: 243 EHVKQLIEKM----EAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQK 291
|
Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1384 | |||
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 100.0 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 100.0 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 100.0 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 100.0 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 100.0 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.97 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.97 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.97 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.97 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.97 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.97 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.97 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.97 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.97 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.97 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.97 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.97 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.97 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.96 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.96 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.96 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.96 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.96 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.96 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.96 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.96 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.96 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.95 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.95 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.95 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.95 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.95 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.94 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.94 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.94 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.94 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.94 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.93 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.93 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.93 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.93 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.93 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.92 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.92 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.92 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.91 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.91 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.91 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.91 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.9 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.9 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.89 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.89 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.88 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 99.88 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.87 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.86 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.86 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.86 | |
| PF11987 | 108 | IF-2: Translation-initiation factor 2; InterPro: I | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.86 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.85 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.85 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.85 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.84 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.84 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 99.84 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.84 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.84 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.83 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.82 | |
| cd03703 | 110 | aeIF5B_II aeIF5B_II: This family represents the do | 99.81 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.8 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.79 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.79 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.78 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.78 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.77 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.75 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.75 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.74 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.74 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.73 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.73 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.73 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.73 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.73 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.72 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.72 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.72 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.72 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.72 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.72 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.71 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.71 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.71 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.71 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.71 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.71 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.71 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.71 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.7 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.7 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.7 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.7 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.7 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.7 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.7 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.7 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.7 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.69 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.69 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.69 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.69 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.69 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.69 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.69 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.69 | |
| PF14578 | 81 | GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 | 99.69 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.68 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.68 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.68 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.68 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.68 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.68 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.68 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.68 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.68 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.68 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.68 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.68 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.68 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.68 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.68 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.67 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.67 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.67 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.67 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.67 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.67 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.67 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.67 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.66 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.66 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.66 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.66 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.66 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.66 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.66 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.66 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.66 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.66 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.66 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.66 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.66 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.66 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.65 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.65 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.65 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.65 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.65 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.65 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.65 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.65 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.65 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.65 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.65 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.64 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.64 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.64 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.64 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.64 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.64 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.64 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.64 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.64 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.64 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.64 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.64 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.63 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.63 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.63 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.63 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.63 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.63 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.63 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.63 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.63 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.62 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.62 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.62 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.62 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.62 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.62 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 99.62 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.61 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.61 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.61 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.61 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.61 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.6 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.6 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.6 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.59 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.59 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.59 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.59 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.59 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.59 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.59 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.59 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.58 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.58 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.58 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.57 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.57 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.57 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.57 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.57 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.57 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.56 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.56 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.56 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.55 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.55 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.55 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.54 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.54 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.54 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.53 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.53 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.52 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.52 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.52 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.51 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.51 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 99.49 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.48 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.48 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.44 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.43 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.42 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.42 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.42 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.42 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.41 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.41 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.4 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.39 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.38 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 99.37 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.37 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.37 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.37 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.36 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.33 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.3 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.3 | |
| PRK13768 | 253 | GTPase; Provisional | 99.28 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.27 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.26 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.26 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.25 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.24 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.24 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.24 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.24 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.23 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.23 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.22 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.2 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.19 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.18 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.18 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.18 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.15 | |
| PTZ00099 | 176 | rab6; Provisional | 99.14 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.14 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.14 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.14 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.1 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.06 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.06 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.05 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.04 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.04 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.02 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.99 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.96 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.95 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.93 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.93 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.89 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.89 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.87 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.86 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.82 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.82 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.82 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.79 | |
| cd03702 | 95 | IF2_mtIF2_II This family represents the domain II | 98.78 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 98.75 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.75 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.74 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.73 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.73 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.71 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.62 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.61 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.59 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.58 | |
| cd03701 | 95 | IF2_IF5B_II IF2_IF5B_II: This family represents th | 98.58 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.57 | |
| KOG0052 | 391 | consensus Translation elongation factor EF-1 alpha | 98.55 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.55 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.54 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.53 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.5 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.48 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.41 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.37 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.35 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.32 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 98.32 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.24 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.24 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.19 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.19 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.18 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.18 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.14 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.14 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.12 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.11 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.1 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.09 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.06 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.05 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.05 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.05 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.04 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.03 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.02 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 97.99 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.99 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 97.98 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.98 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.98 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.95 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.95 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.94 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.92 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 97.89 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.88 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.86 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.83 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.82 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.81 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.81 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.81 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.8 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.79 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.78 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.78 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.75 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.75 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.75 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 97.73 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.71 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.69 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.68 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.67 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.67 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.67 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.65 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.63 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.59 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.59 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.59 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.58 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.57 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.57 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.56 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 97.54 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.53 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.52 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 97.52 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.5 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.46 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.44 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.44 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 97.43 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.43 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.42 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.42 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 97.41 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 97.4 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.36 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 97.34 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 97.29 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 97.29 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.28 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.26 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.25 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 97.23 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.22 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.22 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.17 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 97.12 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.1 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.08 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.06 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 97.0 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 96.98 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 96.98 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 96.97 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.94 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 96.93 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 96.93 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 96.92 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.9 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 96.9 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 96.88 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 96.88 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 96.87 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.83 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 96.77 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.73 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 96.68 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.67 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 96.65 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.63 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 96.62 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 96.62 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 96.61 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 96.59 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.58 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.57 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 96.5 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.46 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.45 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.42 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.36 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 96.34 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 96.32 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 96.31 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.27 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.27 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 96.25 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 96.22 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 96.21 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 96.18 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.1 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.1 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 96.05 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 96.03 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 95.99 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 95.97 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 95.81 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 95.8 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 95.78 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 95.77 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 95.76 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 95.65 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.63 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.61 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 95.6 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 95.54 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 95.5 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 95.43 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 95.39 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 95.35 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 95.32 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.32 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.3 | |
| cd04091 | 81 | mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri | 95.24 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 95.21 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.21 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.19 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 95.14 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 95.14 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 95.13 | |
| CHL00071 | 409 | tufA elongation factor Tu | 95.01 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 95.0 | |
| cd03688 | 113 | eIF2_gamma_II eIF2_gamma_II: this subfamily repres | 94.99 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 94.99 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 94.96 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 94.91 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 94.9 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 94.89 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 94.84 |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-185 Score=1609.63 Aligned_cols=858 Identities=69% Similarity=1.038 Sum_probs=722.5
Q ss_pred CCCCCCcchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000626 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579 (1384)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ee~~~~eEEE~~~~eeEe~~~~eeeer~~~e~~~~k~~~~kek~~~~k~e~~ 579 (1384)
....+...++....++.||+.++++++++|+++|++||+.|+++|++++++++|++.+|.++++++++++++++++++|+
T Consensus 202 ~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGk 281 (1064)
T KOG1144|consen 202 EAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGK 281 (1064)
T ss_pred chhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34445556667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcC--CCCCCCCCCccccCCcccccccccccccCCCCCCcccchhhhhhHHhhhhhhhc
Q 000626 580 LLTGKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657 (1384)
Q Consensus 580 ~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1384)
+|+.+|+++++++++++++++++| ..++.. ....++||+|.+++++..+.....+++.....-++ .+..+ .+
T Consensus 282 lLTakQK~~~a~aea~l~~ll~sg~~~~va~k-dg~~kKrpiY~nKKk~~rq~~~~~~s~~~~~~~~~-~e~~~----~~ 355 (1064)
T KOG1144|consen 282 LLTAKQKEEAALAEAFLKQLLASGGGLPVADK-DGDSKKRPIYANKKKKARQKGNDRTSVEKLGEVEA-KENHA----GD 355 (1064)
T ss_pred cchHhhHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCcccCcccccccccccccccchhhhhhcccCch-hhhcc----CC
Confidence 999999999999999999999997 333332 23377899999988865444332111110000000 00000 00
Q ss_pred cccccchhccccccccccCCcc-ccCCCCCccccCCCCCcchhhhcccccccccccCCCCCccccCCCCCchhhhhcccc
Q 000626 658 VDVGETEKVEEGESLTVEEKPE-IADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736 (1384)
Q Consensus 658 ~~~~e~~~~~~~~~~~~~e~~~-~~~~~~e~~~eeEded~~DdwE~~s~d~~~~~~~~~~~deeee~e~~~~~~~e~k~~ 736 (1384)
+.+.+.+.++..+.+...+... +.+.+++.. ...++|++.. +.....+.++.++ +...+..++.+..
T Consensus 356 ~~~~d~~~~~~~e~~~~~e~e~~~~dv~~e~g------~~e~~~~~k~----~~~~~~d~dd~ee--~~~e~~~~e~~e~ 423 (1064)
T KOG1144|consen 356 VGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEG------EEEDDWDAKV----DLAIDGDDDDDEE--ELQEEVDKELKEA 423 (1064)
T ss_pred CCCCcchhhccccccCCcccccCCCChhhhhc------ccchhhhccc----cccccccccchhh--hhchhhhhccccc
Confidence 0111111111112222222211 111111111 1123366531 1111111111111 1111111110000
Q ss_pred CCCCCcccCCchhhccccCCCCCCCchhhhhhccccccccCCCccCCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000626 737 IPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 737 ~~~~~e~~~~~~~~~~~~~~~~~~e~ed~~~qkee~a~k~~~r~~sa~a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.....+.......+ .....+ ..++..++.+. .+...+.......++..++|+||||||||||+|||.||++|++
T Consensus 424 ~~~~e~s~~~~~~a---~~k~~~-~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~ 497 (1064)
T KOG1144|consen 424 EEEEEDSEKPTEDA---AVKAIS-KVEDAATRTKR--AKIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRG 497 (1064)
T ss_pred ccchhhcccccccc---cccccc-ccchhhhhhhh--cchhccCchhhccccchhcCCceEEEeecccccchHHHHHhhc
Confidence 00000000000000 000000 11121111111 1223333444556778899999999999999999999999999
Q ss_pred CcccccccCceeEeeeeeEecccccccchhhcccccc--cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC
Q 000626 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894 (1384)
Q Consensus 817 t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~--~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv 894 (1384)
+||+.|++|||||+||++|||..+|+.++..+..... ++.|+|++||||||++|+|+|+||+++||+||||||++||+
T Consensus 498 tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl 577 (1064)
T KOG1144|consen 498 TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL 577 (1064)
T ss_pred cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC
Confidence 9999999999999999999999999999988877654 88999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccC
Q 000626 895 EPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974 (1384)
Q Consensus 895 ~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d 974 (1384)
.|||+++|++|+.+++||||++|||||+|+|.++++++|..+|.+|..+++++|..|+..|+.+|.++|||..+||.|.+
T Consensus 578 epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~ 657 (1064)
T KOG1144|consen 578 EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE 657 (1064)
T ss_pred CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccC
Q 000626 975 RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 975 ~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
++.+|++||+||++|+||++|+.+|++|+|.+|..+|.|.+.++|+||+|+.++|+|+||+++|.||+||.||.|||||+
T Consensus 658 ~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 658 MGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred ccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceEEeCCCccHHHHHHHHHHHHHHHHhh
Q 000626 1055 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSR 1134 (1384)
Q Consensus 1055 ~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e~~~~~~~~~~~~~~~~~~~~ 1134 (1384)
+|||+|+||+||+|+||+++||++.|+||++|++|+||+|++.||+++++|++|+||+++++++.++..+|++|.++|++
T Consensus 738 ~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~ 817 (1064)
T KOG1144|consen 738 QGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSR 817 (1064)
T ss_pred CCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHH
Q 000626 1135 IDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEE 1214 (1384)
Q Consensus 1135 i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~ 1214 (1384)
|++++.||||||+|||||||||+||++ ++|||.++||||||++|||.|++|+++.+.||+||||+|+|..+|+.+|.+
T Consensus 818 Id~sgeGv~vqastlgslealleflk~--~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~ 895 (1064)
T KOG1144|consen 818 IDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADE 895 (1064)
T ss_pred hhccCCceEEEecccchHHHHHHHHhh--cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccccCCCCeEEEEEEeeceEecCCCEeecCCc
Q 000626 1215 LGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRD 1294 (1384)
Q Consensus 1215 ~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v~~~~ 1294 (1384)
+||+||+++|||||||.|+.|+..+++.++++..+.|||||+|+|||+||||+++|+|+||.|..|+|++||||||+..+
T Consensus 896 ~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~ 975 (1064)
T KOG1144|consen 896 MGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKRE 975 (1064)
T ss_pred hCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecchhhHHHHHHHhhccCCHHHHHHH
Q 000626 1295 FIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLL 1374 (1384)
Q Consensus 1295 ~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~~~~~~~l~~~~~~~~~~~~~~~~ 1374 (1384)
+|++|+|+||++||++|+.|++|++|||+|++.| ..+|+||||||++.|+|||+|||+|||+|+.|||++||.++|+||
T Consensus 976 ~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~~-~e~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr~el~~~dw~Lv 1054 (1064)
T KOG1144|consen 976 FIDLGRVASIENNHKPVDYAKKGQEVAIKIEASN-GEEQKMFGRHFDMEDILYSHISRRSIDILKKAFRDELTKDDWQLV 1054 (1064)
T ss_pred eeeeeeeeeecccCcccchhhcCCeEEEEEecCC-CCCcchhhcccCccchHHHHhhHhhHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999876 567899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCC
Q 000626 1375 VKLKNLFKIQ 1384 (1384)
Q Consensus 1375 ~~lk~~~~i~ 1384 (1384)
++||++|+|+
T Consensus 1055 ~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 1055 VKLKKLFGII 1064 (1064)
T ss_pred HHHHHHhccC
Confidence 9999999995
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-108 Score=1008.31 Aligned_cols=575 Identities=40% Similarity=0.705 Sum_probs=522.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhc--ccccccCCCCEEEEeCCCCc
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i--~~~~~~~~~~i~~IDTPGHe 868 (1384)
.+|+|+|+||||+||||||||++|+++.+..++.+|+|+++|++++++......+... .....++.++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4799999999999999999999999999999999999999999999876543211111 11122344579999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+.+|.+++..+...+...|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998889999999999988898999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEE
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1026 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk~ 1026 (1384)
...+..++.+|.++||..++|+...+|++.+++|||||+||+||++|+.+|..+++..|...|. +..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 8899999999999999999999888999999999999999999999999999888887765553 45789999999999
Q ss_pred EcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece-eeechhhhcccccceeeccccccccCC
Q 000626 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1384)
Q Consensus 1027 ~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~-~~~~~kev~aa~gv~i~~~gL~~~~aG 1105 (1384)
+.|+|++++++|++|+|++||+|++++++||++++||+|++|.|++++|..+ .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999764 578899999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHH
Q 000626 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1384)
Q Consensus 1106 ~~l~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~ 1185 (1384)
+.|++++ ++++..+++.++.++..+ .+.....||||||||+||||||+++|.. ..|||++++||+||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9997774 445666666666555443 3556778999999999999999999997 5699999999999999999999
Q ss_pred hhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccc
Q 000626 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1384)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf 1265 (1384)
++.++++.||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++..++....+++||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99988999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCe
Q 000626 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1345 (1384)
Q Consensus 1266 ~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~ 1345 (1384)
++++|+||||+|++|+|++|++||.+++.++ |+|.||+|++++|++|++|+||||+|++| ||||||++||+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD~ 546 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAIKDV-------VYGRTIHEGDT 546 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEEeCc-------cccCCCCCCCE
Confidence 9999999999999999999999976666443 99999999999999999999999999986 89999999999
Q ss_pred EEEecchhhHHHHHHHhhccCCHHHHHHHHHHhh
Q 000626 1346 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1379 (1384)
Q Consensus 1346 l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~ 1379 (1384)
|||+|||+|||+|+++||++||.++|+||.++-.
T Consensus 547 l~~~i~~~~~~~l~~~~~~~l~~~~~~~~~ei~~ 580 (590)
T TIGR00491 547 LYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAE 580 (590)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-105 Score=983.93 Aligned_cols=577 Identities=45% Similarity=0.730 Sum_probs=526.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhc-c-cccccCCCCEEEEeCCCC
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-K-ANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i-~-~~~~~~~~~i~~IDTPGH 867 (1384)
..+|+|+|+||||+||||||||++|+++++..++.++||+++|++++++.......... . ....+..++|+|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 46899999999999999999999999999999999999999999998875432111100 0 012234467999999999
Q ss_pred cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++|..++.++++.||++|||||+++|+++||++++.++...++|+|||+||||+++.|....+..|..++..+...+...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEE
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1025 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk 1025 (1384)
|...+..+..+|..+||+.++|+...+|+..+++||+||+||+||.+|+..|..+++..|...+. ...+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999998888899999999999999999999999998877777765554 3567999999999
Q ss_pred EEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccce-eceeeechhhhcccccceeeccccccccC
Q 000626 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1384)
Q Consensus 1026 ~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~r-vk~~~~~~kev~aa~gv~i~~~gL~~~~a 1104 (1384)
.++|+|++++++|.+|+|++||.|++++.++++.++||+|++|.|++++| +.+.|.+++++.+++|++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999889999999999999999999 77788999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHH
Q 000626 1105 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1184 (1384)
Q Consensus 1105 G~~l~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A 1184 (1384)
|+.|+++.+ +++..+...++.++..+ .+.....||||||||+||||||+++|.. .+|||++++||+||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEI--RIETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhc--cccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 55666666666665554 2456678999999999999999999987 689999999999999999999
Q ss_pred HhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeeccccc
Q 000626 1185 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264 (1384)
Q Consensus 1185 ~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~v 1264 (1384)
++|++++|.||+||||||+++++|+++|++.||+|++|+|||||||+|++||.+++++...+....+++||.++|+|++|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999988887788899999999999999
Q ss_pred ccCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCC
Q 000626 1265 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1344 (1384)
Q Consensus 1265 f~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d 1344 (1384)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|++++|++|++|+||||+|++| +|||||.+||
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD 547 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISIDGP-------TVGRQIKEGD 547 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEEecc-------cccCCCCCCC
Confidence 99989999999999999999999875577 46799999999999999999999999999987 6999999999
Q ss_pred eEEEecchhhHHHHHHHhhccCCHHHHHHHHHHhhh
Q 000626 1345 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1380 (1384)
Q Consensus 1345 ~l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~ 1380 (1384)
+|||+++|++++.|++|||++|++++|+||.++-++
T Consensus 548 ~i~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 583 (586)
T PRK04004 548 ILYVDIPEEHAKILEQELKDELSDDEKEALKEILEI 583 (586)
T ss_pred EEEEEEEehhHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988665
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-105 Score=1017.46 Aligned_cols=565 Identities=40% Similarity=0.673 Sum_probs=525.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhccc--ccccCCCCEEEEeCCCCcchhHHH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~--~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.+|++| |||||++||+++|+.+++||||||||++++|++.+..+|..+.. ...++.++|+|||||||..|..++
T Consensus 468 ~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr 543 (1049)
T PRK14845 468 NGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR 543 (1049)
T ss_pred eeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH
Confidence 577777 99999999999999999999999999999999876655544321 234567899999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
.++++.||++|||||+++|+++||.+++.++...++|+|||+||+|++++|...++.+|..++..|...+..++..++..
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEEEcCcce
Q 000626 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEGHGT 1032 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk~~~G~G~ 1032 (1384)
++.+|..+|++.+.||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|+|+
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~ 703 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGT 703 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCcee
Confidence 9999999999999999999999999999999999999999999998887776655554 45678999999999999999
Q ss_pred EEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece-eeechhhhcccccceeeccccccccCCCceEEe
Q 000626 1033 TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1033 vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~-~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~ 1111 (1384)
|++++|++|+|++||+|++|++++|++++||+|++|.|++++|..+ .|.+++++.+++|++|+++||+.+.||+.|+++
T Consensus 704 vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 704 TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEe
Confidence 9999999999999999999999999999999999999999999665 789999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHHhhhhcc
Q 000626 1112 GPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKK 1191 (1384)
Q Consensus 1112 ~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~ 1191 (1384)
.++++++.+.+.++.++..+ .+.....||||||||+||||||+++|+. ..|||++++||+||++||++|++|++++
T Consensus 784 ~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~~~~ 859 (1049)
T PRK14845 784 PTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYKQEN 859 (1049)
T ss_pred CCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhhccC
Confidence 99999988888887777655 3556788999999999999999999987 5799999999999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccccCCCCe
Q 000626 1192 KEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPI 1271 (1384)
Q Consensus 1192 ~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~~~~~~ 1271 (1384)
|+||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++.+++....+++||+++|+|++||++++|+
T Consensus 860 ~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~~ 939 (1049)
T PRK14845 860 PLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPA 939 (1049)
T ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCCCCe
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecc
Q 000626 1272 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1272 IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
||||+|++|+|++|++||..++.+ +|+|.||+|++++|++|++|+||||+|+++ +|||||++||+|||+||
T Consensus 940 IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~-------~~gr~~~~gD~l~~~i~ 1010 (1049)
T PRK14845 940 IVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDEGETLYVDVP 1010 (1049)
T ss_pred EEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEEecc-------cccCCCCCCCEEEEecC
Confidence 999999999999999998656644 499999999999999999999999999986 88999999999999999
Q ss_pred hhhHHHHHHHhhccCCHHHHHHHHHHh
Q 000626 1352 RKSIDVLKANYRDDLSMDEWRLLVKLK 1378 (1384)
Q Consensus 1352 ~~~~~~l~~~~~~~~~~~~~~~~~~lk 1378 (1384)
|.||+.|+.+||++||.++|++|.++-
T Consensus 1011 ~~~~~~l~~~~~~~l~~~~~~~~~~~~ 1037 (1049)
T PRK14845 1011 ESHVRELYHKYMDRLRDDEKEALKMYM 1037 (1049)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 999999999999999999999988543
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-99 Score=884.79 Aligned_cols=500 Identities=37% Similarity=0.489 Sum_probs=439.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.+|+|+|||||||||||||||++||++++..+++||||||||+|+++++.. ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999998632 2357999999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
++||.||+..||++||||++++|++|||++.|++++.+++||||++||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
...+..+|.++||+++.| ++.+.|||+||+||+||++||..|+.+.+. +..+..+..++.|+|+|++..+|+
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev-~elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEV-LELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHH-HhhhcCCCCcceEEEEEEEeccCC
Confidence 234666788899998865 677999999999999999999999866654 344556678899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceEE
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v 1110 (1384)
|++++++|++|+|+.||.|++++.+|++.+.++.++.|-+...++....+..++++++|.+..++++++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999999888888877788888999999999999999999999998887
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEeecCccccchHHHHH
Q 000626 1111 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1185 (1384)
Q Consensus 1111 ~~--~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~vG~vt~~DV~~A~ 1185 (1384)
+. ...........+...+..+..+.+....||||||||+||||||..+|+ .+++++.|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 65 333222333333333333322334456899999999999999998874 5778899999999999999999999
Q ss_pred hhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhc-cceecceeeeeccccc
Q 000626 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA-DEAVFPCVLKILPNCV 1264 (1384)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~-~~av~p~~~~i~~~~v 1264 (1384)
++ +|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++++..++.. +.+ +|+.+.++|
T Consensus 356 as------~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~-~~r~v~~~~--- 425 (509)
T COG0532 356 AS------DAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLA-EVRAVFKLP--- 425 (509)
T ss_pred hc------CCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccce-EEEEEEEcC---
Confidence 84 6999999999999999999999999999999999999999999999999887765 554 555444333
Q ss_pred ccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCC
Q 000626 1265 FNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIE 1343 (1384)
Q Consensus 1265 f~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~ 1343 (1384)
+.|.|+||+|++|+|++|+++|+ |++.+||.|+|.||+|++++|++|++|+||||+|+|| |||.+|
T Consensus 426 ---k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~----------~di~~g 492 (509)
T COG0532 426 ---KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENY----------RDIKEG 492 (509)
T ss_pred ---CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCc----------ccCCCC
Confidence 47999999999999999999997 6999999999999999999999999999999999986 599999
Q ss_pred CeEEEecchhhHHHHH
Q 000626 1344 DELVSHISRKSIDVLK 1359 (1384)
Q Consensus 1344 d~l~s~i~~~~~~~l~ 1359 (1384)
|+|||++++++.+.|+
T Consensus 493 D~le~~~~~~~~r~l~ 508 (509)
T COG0532 493 DILEVFEPVEVKRTLK 508 (509)
T ss_pred CEEEEEEEEeechhhc
Confidence 9999999999887764
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-87 Score=776.26 Aligned_cols=483 Identities=30% Similarity=0.469 Sum_probs=410.3
Q ss_pred CccccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeC
Q 000626 785 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1384)
Q Consensus 785 a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDT 864 (1384)
..++....|+|+|+|||||||||||||++||++.|..+++||||||||++.++.... ..|+|+||
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G---------------~~iTFLDT 208 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG---------------KSITFLDT 208 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC---------------CEEEEecC
Confidence 344555679999999999999999999999999999999999999999999877532 35999999
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|||..|..||.||+..+||+||||.+++|++|||.++|.+++..++|+||+|||||.+ ++++
T Consensus 209 PGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~p----------- 270 (683)
T KOG1145|consen 209 PGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GANP----------- 270 (683)
T ss_pred CcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCCH-----------
Confidence 9999999999999999999999999999999999999999999999999999999985 4443
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEE
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEV 1024 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEv 1024 (1384)
..+..+|..+|+..+ ++|+++++||+||+||+||+.|.+.++.+ ...|..+..+..+++++|+|+
T Consensus 271 --------ekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~-Ae~mdLkA~p~g~~eg~VIES 335 (683)
T KOG1145|consen 271 --------EKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLL-AEVMDLKADPKGPAEGWVIES 335 (683)
T ss_pred --------HHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHH-HHHhhcccCCCCCceEEEEEe
Confidence 456677888998766 56999999999999999999999988643 456777888899999999999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeecccccc-c
Q 000626 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-A 1102 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~-~ 1102 (1384)
...+|+|.+++++|.+|||+.|+.+ ||| ..+++||+|++.+. +.|. +.++..+.+.||.. +
T Consensus 336 ~vdkg~G~~aT~iVkrGTLkKG~vl-V~G---~~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP 398 (683)
T KOG1145|consen 336 SVDKGRGPVATVIVKRGTLKKGSVL-VAG---KSWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLP 398 (683)
T ss_pred eecCCccceeEEEEeccccccccEE-EEe---chhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCC
Confidence 9999999999999999999999965 465 45899999987652 2222 33566666778887 7
Q ss_pred cCCCceEEeCCCccHHHHHHHHHH------------HH----H---HHH--------h-----hhhccC----CceEEEe
Q 000626 1103 IAGTGLYVVGPDDDLEDVKEEAME------------DM----K---SVM--------S-----RIDKSG----EGVCVQA 1146 (1384)
Q Consensus 1103 ~aG~~l~v~~~e~~~~~~~~~~~~------------~~----~---~~~--------~-----~i~~~~----~gvivka 1146 (1384)
.+|+-++.|.+++.++.+-..... ++ . +.+ . +++... .+||||+
T Consensus 399 ~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~ 478 (683)
T KOG1145|consen 399 IAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKC 478 (683)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEe
Confidence 999999999999877654221110 00 0 000 0 122222 4699999
Q ss_pred CCcCcHHHHHHHh---ccCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcc
Q 000626 1147 STLGSLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIAD 1223 (1384)
Q Consensus 1147 dt~GSlEAl~~~L---~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~ 1223 (1384)
|++||+|||++.| .+++|++.|++++||+||++||.+|.+ +.|||+||||+.++....+|...||+|+.||
T Consensus 479 DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~n 552 (683)
T KOG1145|consen 479 DVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYN 552 (683)
T ss_pred cccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehh
Confidence 9999999999876 567899999999999999999999997 6899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHH-hccceecceeeeeccccccc--CCCCeEEEEEEeeceEecCCCEee-cCCceeeee
Q 000626 1224 IIYHLFDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIG 1299 (1384)
Q Consensus 1224 IIY~L~d~~~~~~~~~~~~~~~~-~~~~av~p~~~~i~~~~vf~--~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G 1299 (1384)
|||||||++++.|...+++..++ .+|+|. ++.+|. |+ ++.-.||||+|.+|.|.+.+.+++ |+|++||.|
T Consensus 553 VIY~LieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F~---i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G 626 (683)
T KOG1145|consen 553 VIYRLIEDVRELLSERLPPVEEQEVVGEAE---VLATFD---IREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEG 626 (683)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEeecccee---eeeeEe---eccccccccccceEeecceEeecceEEEEeCCcEEEEe
Confidence 99999999999999988876544 569985 445443 33 233359999999999999999996 899999999
Q ss_pred EEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecchh
Q 000626 1300 RIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353 (1384)
Q Consensus 1300 ~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~~~ 1353 (1384)
.|.||+|++++|.+|++|.||||.|.++| -.|.+||+|.||-+|.
T Consensus 627 ~l~SlKh~KedV~~vkkg~ECGl~~~d~~---------~~f~~GD~i~~ye~k~ 671 (683)
T KOG1145|consen 627 ELDSLKHLKEDVTEVKKGHECGLTFDDGN---------EDFKEGDKIQCYEKKR 671 (683)
T ss_pred chhHHhhhhhhhhhhcCCCeeeeEeccCC---------cCCCcCCEEEEeehhh
Confidence 99999999999999999999999999987 2699999999998554
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-81 Score=773.18 Aligned_cols=474 Identities=32% Similarity=0.455 Sum_probs=392.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...|+|+|+||||+|||||||+++|+++++..++.+|||+++|++.+.+... ..|+|||||||++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 4569999999999999999999999999999999999999999987766421 1599999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..+|.++++.+|++|||||+++|+++||.++|+++...++|+|||+||||+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999852 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1384)
..+..+|...|+... .|+..+++||+||++|+||.+|+.+|... ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 112233444444332 23566799999999999999999998642 22222223456789999999999999
Q ss_pred cceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccc-ccCCCce
Q 000626 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1108 (1384)
Q Consensus 1030 ~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~-~~aG~~l 1108 (1384)
+|++++++|++|+|++||.|++++ .+++||+|++++.. ..+.+. +|..+.+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~~----~~~kVr~l~~~~g~----------~v~~a~--~g~~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVGA----AYGRVRAMIDENGK----------SVKEAG--PSKPVEILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEECC----CccEEEEEECCCCC----------CCCEEC--CCCEEEEeCCCCCCCCCCEE
Confidence 999999999999999999998753 46789999875521 112223 455566669987 5999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeE
Q 000626 1109 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1169 (1384)
Q Consensus 1109 ~v~~~e~~~~~~~~~~~~~-------------~~~~~~~i~---~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~ 1169 (1384)
+++.++.+++.+.+...+. +.+++..+. ....+|||||||+||||||.++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999998877654332221 222222222 244689999999999999998864 567899999
Q ss_pred EeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHH-hc
Q 000626 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AA 1248 (1384)
Q Consensus 1170 ~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~-~~ 1248 (1384)
+++||+||++||++|+++ +|+||||||++++.++++|++.||+|++|+|||||||+|++||.+++++...+ ..
T Consensus 419 ~~~vG~i~~~Dv~~a~~~------~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASAS------NAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHhc------CCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 999999999999999984 89999999999999999999999999999999999999999999999887544 34
Q ss_pred cceecceeeeecccccccC-CCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEec
Q 000626 1249 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1326 (1384)
Q Consensus 1249 ~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~ 1326 (1384)
|.|. |+. ||+. +.|+||||+|++|+|++|+++|| |+|.+||.|+|.||+|++++|++|++|+||||+|++
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 564 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN 564 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec
Confidence 6663 333 7774 56999999999999999999997 789999999999999999999999999999999999
Q ss_pred CCchhhhccccccccCCCeEEEecc
Q 000626 1327 SNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1327 ~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
|| +|.+||+|+||-.
T Consensus 565 ~~----------~~~~gD~i~~~~~ 579 (587)
T TIGR00487 565 YN----------DIKEGDIIEAFEV 579 (587)
T ss_pred cc----------cCCCCCEEEEEEE
Confidence 85 8999999999853
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-80 Score=776.20 Aligned_cols=472 Identities=33% Similarity=0.470 Sum_probs=396.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...|+|+|+||||+||||||||++|+++++..++.+|||+++|++.+.+.. ..|+|||||||.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 367999999999999999999999999999999999999999998877642 2499999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..++.++++.+|++|||||+++|+++||+++|.++...++|+|||+||||+.. .++.
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-------a~~e--------------- 407 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-------ANPD--------------- 407 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-------cCHH---------------
Confidence 999999999999999999999999999999999999999999999999999952 1211
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1384)
.+...|..+++..+ .|++.++||||||++|.||.+|+.+|.... ..+.....+..++.+.|++++.++|
T Consensus 408 ----~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 408 ----RVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ----HHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 12222333333322 246678999999999999999999987643 2222234456678999999999999
Q ss_pred cceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccc-cCCCc
Q 000626 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1107 (1384)
Q Consensus 1030 ~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~-~aG~~ 1107 (1384)
+|++++++|++|+|+.||.|+++ +.+++||.|++... ..+. +.+|..+.+.||..+ .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~g----~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVAG----TTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEEC----CcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 99999999999999999998763 56889999986532 1222 346777778899886 99999
Q ss_pred eEEeCCCccHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEEeCCcCcHHHHHHHh---ccCCeeeee
Q 000626 1108 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1168 (1384)
Q Consensus 1108 l~v~~~e~~~~~~~~~~~~-------------~~~~~~~~i~~~---~~gvivkadt~GSlEAl~~~L---~~~~v~i~i 1168 (1384)
|+++.++..+..+...... .|..++..+... ..+|||||||+||||||..+| .++++.|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999998877666432211 133333334222 358999999999999998875 567899999
Q ss_pred EEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHh-
Q 000626 1169 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1247 (1384)
Q Consensus 1169 ~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~- 1247 (1384)
++++||+||++||++|++ ++|+||||||++++.++.+|++.||.|++|+|||||||+|+.||.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999997 5899999999999999999999999999999999999999999999998876554
Q ss_pred ccceecceeeeecccccccC-CCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEe
Q 000626 1248 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1325 (1384)
Q Consensus 1248 ~~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~ 1325 (1384)
+|.|. |+ .||+. +.|.||||+|++|+|++|+++|| |+|.+||.|+|.||+|++++|.+|++|+||||.|+
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~ 765 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLE 765 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEee
Confidence 57774 33 36764 55999999999999999999997 79999999999999999999999999999999999
Q ss_pred cCCchhhhccccccccCCCeEEEecc
Q 000626 1326 GSNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1326 ~~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
+|| +|.+||+|+||..
T Consensus 766 ~~~----------d~~~gD~ie~~~~ 781 (787)
T PRK05306 766 NYN----------DIKEGDIIEAYEM 781 (787)
T ss_pred ccc----------cCCCCCEEEEEEE
Confidence 996 7999999999864
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-78 Score=753.26 Aligned_cols=474 Identities=30% Similarity=0.438 Sum_probs=390.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
..|+|+|+||||+|||||||+++|+++.+..++.+|||++++++.+.+.... ....|+|||||||..|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~------------~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKD------------ENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecC------------CceEEEEEECCcHHHH
Confidence 3588999999999999999999999999988899999999998876553100 1135999999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+++..||++|||||+++|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
..+...|..+++... .|++.++||++||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+++
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 112222333332221 2356789999999999999999999876542 2222234456788999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeecccccc-ccCCCce
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGL 1108 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~-~~aG~~l 1108 (1384)
|++++++|++|+|+.||.|+++ +.+++||.|+++.. ..+. +.+|..+.+.||.. +.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998764 35678999885542 1222 34677777889954 6789999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHH---HhhhhccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEee
Q 000626 1109 YVVGPDDDLEDVKEEAMEDM----------KSV---MSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1172 (1384)
Q Consensus 1109 ~v~~~e~~~~~~~~~~~~~~----------~~~---~~~i~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~ 1172 (1384)
+++.++..+..+........ ..+ +........+|||||||+||||||+++|. +++|.|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999887766643222111 111 11123345689999999999999998874 567999999999
Q ss_pred cCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHh-ccce
Q 000626 1173 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1251 (1384)
Q Consensus 1173 vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~-~~~a 1251 (1384)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|++||.+++.+...+. +|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999998876543 4666
Q ss_pred ecceeeeecccccccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCch
Q 000626 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1330 (1384)
Q Consensus 1252 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~ 1330 (1384)
. |. .||+.++|.||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|.+|++|+||||.|.+||
T Consensus 653 ~------v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-- 722 (742)
T CHL00189 653 E------VK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-- 722 (742)
T ss_pred E------ee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC--
Confidence 3 33 3777666999999999999999999997 88999999999999999999999999999999999997
Q ss_pred hhhccccccccCCCeEEEec
Q 000626 1331 EQQKMFGRHFDIEDELVSHI 1350 (1384)
Q Consensus 1331 ~~~~~~gr~f~~~d~l~s~i 1350 (1384)
+|.+||+|.||-
T Consensus 723 --------d~~~gD~ie~y~ 734 (742)
T CHL00189 723 --------LWQSGDKIHAFE 734 (742)
T ss_pred --------CCCcCCEEEEEE
Confidence 699999999985
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=314.70 Aligned_cols=261 Identities=26% Similarity=0.398 Sum_probs=197.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeEeeeeeEeccccc
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~~~i 841 (1384)
...+++|+||||||||||+.+|++.. +. ..+.+|+|.+++...|.++
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-- 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-- 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--
Confidence 34569999999999999999998532 11 1123455555555444443
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceE
Q 000626 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 913 (1384)
.+.|+|||||||.+|...|..|++++|++|||||+..| +.+||++|+-+++.+|+ .+|
T Consensus 84 --------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 84 --------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred --------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 24599999999999999999999999999999999998 89999999999999997 688
Q ss_pred EEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000626 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 914 VaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
|++||||++. |++ ++|......+..++...||+. .+++||||||++|+||-
T Consensus 150 VavNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 150 VAVNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLT 200 (428)
T ss_pred EEEEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCccc
Confidence 9999999984 764 344555556666666777763 35899999999999997
Q ss_pred hHHHHHHHHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000626 994 DLLLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 994 eLl~~L~~~~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
..-...-||-.++|++.|+. +.||+++|.+++.+.|.|++..++|.+|+|++||.|++.+.+ .
T Consensus 201 ~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~------- 271 (428)
T COG5256 201 KKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--V------- 271 (428)
T ss_pred ccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc--c-------
Confidence 66544444445666666643 356999999999999999999999999999999999987644 2
Q ss_pred cCCCCCccceeceeeechhhhcccc-c--ceeeccccccccCCCceEEeCCC
Q 000626 1066 LTPHPMKELRVKGTYLHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1066 l~p~p~~e~rvk~~~~~~kev~aa~-g--v~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
...|+++++||.++..+. | +.+.++|+..-....+.++..++
T Consensus 272 -------~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 272 -------VGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred -------eEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 234667788888877664 3 66677777653333444444333
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-32 Score=314.09 Aligned_cols=224 Identities=27% Similarity=0.344 Sum_probs=179.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeeeeEecccccccchhhccccccc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~ 854 (1384)
+++|| ++|+.|+|||||||.|+|+... .+..+.+|||....++.+-|...
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~------------- 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG------------- 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC-------------
Confidence 78999 9999999999999999998421 12224466666554443333210
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
+.+-|++||||||.+|+..++|.+..||+|||||||++|+++||.-.+.++..+|+.+|.||||||++ .++..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCHH
Confidence 11459999999999999999999999999999999999999999999999999999999999999996 44432
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~-~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~ 1013 (1384)
.. ..++.+ .++. .-+++.+||++|.|+..+|..|++.++++.. ..
T Consensus 196 ~V-------------------~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~---~~ 241 (650)
T KOG0462|consen 196 RV-------------------ENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG---IR 241 (650)
T ss_pred HH-------------------HHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCCCC---CC
Confidence 22 222211 1222 2389999999999999999999988876533 35
Q ss_pred ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCC
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~ 1069 (1384)
..||++.|++++++..+|.++.+.|.+|.|+.||.|..+.+......+...++.|.
T Consensus 242 d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~ 297 (650)
T KOG0462|consen 242 DAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE 297 (650)
T ss_pred CcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC
Confidence 67899999999999999999999999999999999999888766666777777665
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=318.92 Aligned_cols=260 Identities=23% Similarity=0.319 Sum_probs=187.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeEeeeeeEecccccc
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIR 842 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~~~i~ 842 (1384)
..+|+|+||+|||||||+++|++.. +. ....+|+|.+++...+.+
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~---- 82 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc----
Confidence 3469999999999999999998521 11 112355666655444433
Q ss_pred cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-------CHHHHHHHHHHHhcCCc-eEE
Q 000626 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIV 914 (1384)
Q Consensus 843 ~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IV 914 (1384)
....|+|||||||.+|...+.++++.+|+||||||+..|+ .+||.+||.++..+++| +||
T Consensus 83 ------------~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 83 ------------PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred ------------CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 3346999999999999999999999999999999999997 48999999999999998 578
Q ss_pred EEeecccc-cCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000626 915 ALNKVDRL-YGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 915 aINKiDl~-~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
||||||+. ..|. ...|......+...|...|++. ..++|||+||++|+||.
T Consensus 151 ~vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 151 CINKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMI 202 (446)
T ss_pred EEEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCcc
Confidence 99999963 1232 2234445556666677667642 24799999999999997
Q ss_pred hHHHHHHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000626 994 DLLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 994 eLl~~L~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
+.-..+.||..+.+.+.|. ...|+++.|.+++.+.|.|++++|+|.+|+|++||.|++++++ ...+|+
T Consensus 203 ~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~~~Vk-- 278 (446)
T PTZ00141 203 EKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VTTEVK-- 278 (446)
T ss_pred cCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cEEEEE--
Confidence 5433333332333333322 2457999999999999999999999999999999999987653 334444
Q ss_pred cCCCCCccceeceeeechhhhc---ccccceeeccccccccCCCceEEeCC
Q 000626 1066 LTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1066 l~p~p~~e~rvk~~~~~~kev~---aa~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
++++|+..+. ++..+.+.+.+++......+++++.+
T Consensus 279 ------------sI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 279 ------------SVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred ------------EEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 4445554444 33446677777765555566666654
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=315.10 Aligned_cols=259 Identities=23% Similarity=0.297 Sum_probs=186.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--c-----------------------------ccccCceeEeeeeeEeccccccc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV--Q-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v--~-----------------------------~ge~gGITq~iga~~~~~~~i~~ 843 (1384)
.+|+|+||+|||||||+++|++..- . ....+|||.+++..+|.+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~----- 82 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET----- 82 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-----
Confidence 4599999999999999999985221 0 111244555544443333
Q ss_pred chhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-------CHHHHHHHHHHHhcCCc-eEEE
Q 000626 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 915 (1384)
Q Consensus 844 ~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVa 915 (1384)
..+.|+|||||||.+|..++..|++.+|++|||||+..|. .+||++||.++..+++| +|||
T Consensus 83 -----------~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 83 -----------TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 3356999999999999999999999999999999999983 28999999999999996 6889
Q ss_pred Eeeccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhh
Q 000626 916 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 916 INKiDl~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1384)
+||||++. .| ...+|...+..+...|...||.. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999851 12 12345555566777777777652 247999999999999965
Q ss_pred HHHHHHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeecc
Q 000626 995 LLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1384)
Q Consensus 995 Ll~~L~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll 1066 (1384)
....+.|+-.+.+++.|. ...||++.|.++|.+.|.|+++.|+|.+|+|++||.|++++++ ....
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~~~----- 276 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LTTE----- 276 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CEEE-----
Confidence 433333322233333332 2457999999999999999999999999999999999987643 2333
Q ss_pred CCCCCccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000626 1067 TPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1067 ~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
|+++++++..+..| ..+.|.+.+++......+++++..
T Consensus 277 ---------VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 277 ---------VKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ---------EEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 44555555554433 346777777765555566666654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=323.97 Aligned_cols=251 Identities=29% Similarity=0.434 Sum_probs=189.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.||+++||+|||||||+++|++.+ +.....+|||++++..++.... ...|+|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 479999999999999999999743 3344557999999876654321 1248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..|+..+|++|||||+++|+++||++++.++..+++|. |||+||||++. .. .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-------~~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-------EA--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-------HH--------------HHHH
Confidence 99999999999999999999999999999999999999885 79999999862 11 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
....+...+...++ ..++||||||++|.||++|+..|..+.... -....++++.|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233334443333 236899999999999999999987654321 11456899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccceeeccc-cccccCCC
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQG-LEHAIAGT 1106 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~g-L~~~~aG~ 1106 (1384)
|+|++|+|.+|+|++||.|.++|++. . .+|+++++|+..+..| +-+.+.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~~--~--------------~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVNK--P--------------MRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCCC--c--------------EEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 99999999999999999999876541 2 3455556666555543 335566666 65544555
Q ss_pred ceEEeCC
Q 000626 1107 GLYVVGP 1113 (1384)
Q Consensus 1107 ~l~v~~~ 1113 (1384)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 5555554
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=321.98 Aligned_cols=254 Identities=28% Similarity=0.398 Sum_probs=193.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 379999999999999999999643 3344568999999877766543 248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++. .... ..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~~--------------~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEEI--------------KR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHHH--------------HH
Confidence 9999999999999999999999999999999999999999 999999999962 1110 11
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
....+...+...++ ...+++|||||++|.||.+|+..|..++..... .....+++++|..+|.+.|.
T Consensus 124 ~~~ei~~~l~~~~~-----------~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIF-----------LKNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCC-----------CCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 11122223333332 124699999999999999999988766543211 11356899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccceeeccccccccCCCc
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTG 1107 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~ 1107 (1384)
|+|++|+|.+|+|++||.|.+++++ .. .+|+++++|+..+..| +.+.|.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~--~~--------------~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN--HE--------------VRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC--ce--------------EEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987653 22 3455566666665543 447777788776545555
Q ss_pred eEEeCCC
Q 000626 1108 LYVVGPD 1114 (1384)
Q Consensus 1108 l~v~~~e 1114 (1384)
++++.+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 5555443
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=305.05 Aligned_cols=257 Identities=24% Similarity=0.349 Sum_probs=181.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 34599999999999999999986321 11124677776654444332 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++..+++| +|||+||||++. ...+.
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~~-- 147 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEELL-- 147 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHHH--
Confidence 589999999999999999999999999999999999999999999999999999 678999999862 11111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC--------ChhhHHHHHHHHHHHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe--------GI~eLl~~L~~~~~~~l~ 1008 (1384)
......+...|...++. +..++|||+||++|. +++.|++.|..+++.+
T Consensus 148 ------------~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~-- 203 (394)
T PRK12736 148 ------------ELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP-- 203 (394)
T ss_pred ------------HHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC--
Confidence 11112344455555543 235799999999994 4566666665544321
Q ss_pred HhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000626 1009 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1009 e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
.-....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|...... .+|+++++|+..+..
T Consensus 204 -~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~--------------~~V~sI~~~~~~~~~ 268 (394)
T PRK12736 204 -ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQK--------------TVVTGVEMFRKLLDE 268 (394)
T ss_pred -CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeE--------------EEEEEEEECCEEccE
Confidence 11234679999999999999999999999999999999998876532222 345555565555543
Q ss_pred c-cc--ceeeccccccccCCCceEEeCC
Q 000626 1089 A-QG--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1089 a-~g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+ +| +.+++.|++......+.+++.+
T Consensus 269 a~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 269 GQAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred ECCCCEEEEEECCCcHHhCCcceEEecC
Confidence 3 23 4455566654434444444443
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=287.62 Aligned_cols=260 Identities=27% Similarity=0.383 Sum_probs=196.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC----------------cccccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t----------------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|.-+||||||||||+.+|+.. +.....++|||+..... .|+.. .
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv--eYeTa--------------~ 116 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV--EYETA--------------K 116 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee--eeecc--------------c
Confidence 3456999999999999999999731 12344578888765433 33321 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
++|..+|||||.+|..+|..|..+.|++||||.+++|.+|||++||.++++.+++ +||+|||.|++. .+...+
T Consensus 117 RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~le 190 (449)
T KOG0460|consen 117 RHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLE 190 (449)
T ss_pred cccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHH
Confidence 5689999999999999999999999999999999999999999999999999986 667999999983 233322
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC---C----CC---hhhHHHHHHHHHHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---G----EG---IPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t---G----eG---I~eLl~~L~~~~~~ 1005 (1384)
.+ -.+++.+|.++||+ |.++|+|..||+. | .| |..|++.+-.+++.
T Consensus 191 LV--------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 191 LV--------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH--------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 22 23567788889986 6788999999985 3 22 33344444333332
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000626 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
+-. ....||.+.|..+|.+.|+|+|++|+|.+|+|+.|+.+-|.|.+..+-+ .|.|+.++++.
T Consensus 247 P~R---~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkt--------------tvtgiemF~K~ 309 (449)
T KOG0460|consen 247 PER---DLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKT--------------TVTGIEMFRKS 309 (449)
T ss_pred ccc---ccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceee--------------EeehHHHHHHH
Confidence 211 2356799999999999999999999999999999999988887643322 35677788888
Q ss_pred hcccc---cceeeccccccccCCCceEEeCCCc
Q 000626 1086 IKAAQ---GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1086 v~aa~---gv~i~~~gL~~~~aG~~l~v~~~e~ 1115 (1384)
+..|+ .+-+.++||.....-++++++.|..
T Consensus 310 ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 310 LDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred HHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 77664 3566678888777778888877764
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=305.80 Aligned_cols=259 Identities=24% Similarity=0.363 Sum_probs=182.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
....+|+|+||+|||||||+++|++... .....+|||++++...+.+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~---------------- 122 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA---------------- 122 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC----------------
Confidence 3445699999999999999999973210 12234778877766655443
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
...|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++..+++| +|||+||||++. ...+.
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~ 196 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELL 196 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHH
Confidence 23599999999999999999999999999999999999999999999999999999 578999999862 01111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc---CCCC-------hhhHHHHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQ 1004 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~---tGeG-------I~eLl~~L~~~~~ 1004 (1384)
..+ ...+...|...++. +..+||||+||+ +|.| ++.|++.|..+++
T Consensus 197 ~~i--------------~~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 197 ELV--------------EMELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHH--------------HHHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 110 11233334433432 245799999987 4555 5667776665443
Q ss_pred HHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC--CceeEEeeeccCCCCCccceeceeeec
Q 000626 1005 KTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ--GPIVTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1005 ~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~--g~~~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
.+. -....+|++.|.++|.+.|.|+|++|+|.+|+|++||.|+++|.. |... .+|+++++|
T Consensus 253 ~p~---r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~--------------~~VksI~~~ 315 (447)
T PLN03127 253 EPV---RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLK--------------TTVTGVEMF 315 (447)
T ss_pred CCC---cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEE--------------EEEEEEEEE
Confidence 221 112457999999999999999999999999999999999887643 1223 345556666
Q ss_pred hhhhccc---ccceeeccccccccCCCceEEeCC
Q 000626 1083 HKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1083 ~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+..+..| ..+.+.+.|++......+++++.+
T Consensus 316 ~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 316 KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 6555543 235566666655444445555443
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=281.79 Aligned_cols=257 Identities=25% Similarity=0.367 Sum_probs=192.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----------------cccccccCceeEeeeeeEecccccccchhhcccccccCCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----------------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~ 858 (1384)
.+|+.+||+|||||||+.+|... +.....++|||+......+.+. .++
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rh 76 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRH 76 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------Cce
Confidence 45999999999999999999631 1223445777776655544433 357
Q ss_pred EEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHH
Q 000626 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 859 i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
|.++|||||.+|..+|..|+.+.|++||||+|.+|.+|||++|+.+++..++|. ||++||+|++. ...+.+.
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellel- 149 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLEL- 149 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999975 57999999983 2222221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC-CCCh-------hhHHHHHHHHHHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS-GEGI-------PDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t-GeGI-------~eLl~~L~~~~~~~l~e 1009 (1384)
.-..++.+|..+||. |..+||+..||+. .+|- .+|++.+..|++.+-.
T Consensus 150 -------------VemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per- 205 (394)
T COG0050 150 -------------VEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER- 205 (394)
T ss_pred -------------HHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-
Confidence 224677788888875 5678999999986 3443 3444444333332211
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000626 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
....||.++|.++|.+.|+|++++|+|.+|+|++|+.+.+.|.... ....+.|+.|+.+.+..+
T Consensus 206 --~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~--------------~kttvtgvemfrk~ld~~ 269 (394)
T COG0050 206 --DIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKET--------------QKTTVTGVEMFRKLLDEG 269 (394)
T ss_pred --cccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEeccccc--------------ceeEEEhHHHHHHHHhcc
Confidence 2346799999999999999999999999999999999998875422 223355666666655543
Q ss_pred ---ccceeeccccccccCCCceEEeCCC
Q 000626 1090 ---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1090 ---~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
.++.+.++|..+-..-++++++.|.
T Consensus 270 ~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 270 QAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred ccCCCcceEEEeccccceecceEeecCC
Confidence 4677888888777777777777665
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=307.65 Aligned_cols=257 Identities=24% Similarity=0.317 Sum_probs=182.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc----------------ccccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~----------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..+|+|+||+|||||||+++|++.. ......+|||.+++..++.+. ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NR 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------Cc
Confidence 3459999999999999999998521 122344777777766665543 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+|+..+|++|||||+..|+++||.++|.++..+++| +|||+||||++. ...+
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL--- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH---
Confidence 599999999999999999999999999999999999999999999999999999 778999999962 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCCh------------------hhHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1384)
+......+...|...||. ...++|||+||++|.++ +.|++.
T Consensus 216 -----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 216 -----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 111123455556666653 23589999999999654 222222
Q ss_pred HHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece
Q 000626 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1384)
Q Consensus 999 L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~ 1078 (1384)
|..+.+. . .-....||++.|.++|.+.|.|+++.|.|.+|+|++||.|++++.+.....+|+ +
T Consensus 275 l~~~~~~--p-~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~Vk--------------s 337 (478)
T PLN03126 275 VDSYIPI--P-QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVT--------------G 337 (478)
T ss_pred HHHhCCC--C-CCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEE--------------E
Confidence 2221100 0 011245799999999999999999999999999999999998765322334444 4
Q ss_pred eeechhhhcc---cccceeeccccccccCCCceEEeCC
Q 000626 1079 TYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1079 ~~~~~kev~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+++++..+.. +..+.+.+.|++......+++++.+
T Consensus 338 I~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 338 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 4454444443 3346666677665444555555544
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=304.23 Aligned_cols=227 Identities=19% Similarity=0.228 Sum_probs=166.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEeccc-ccccchhh----cc--------cc---c
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE-NIRERTRE----LK--------AN---A 852 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~-~i~~~~~~----i~--------~~---~ 852 (1384)
..+.+|+++||+|||||||+.+|++.+. .....+|||+.+|..++.+. ....+... .. +. .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4456799999999999999999997543 45556899999998765321 00000000 00 00 0
Q ss_pred -ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCC
Q 000626 853 -TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 853 -~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~ 929 (1384)
......|+|||||||.+|...+.+|++.+|++|||||+.+| +++||.++|.++..++++ +|||+||||++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------ 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------
Confidence 00124699999999999999999999999999999999996 799999999999999985 789999999962
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000626 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
... +...+..+...|... +...++|||+||++|.||+.|++.|...++.+
T Consensus 186 -~~~--------------~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~--- 235 (460)
T PTZ00327 186 -EAQ--------------AQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIP--- 235 (460)
T ss_pred -HHH--------------HHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---
Confidence 110 111122233333221 12357999999999999999999887544322
Q ss_pred hhhcccccceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccC
Q 000626 1010 KLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
.-....++++.|..+|.+.| +|+|++|.|.+|+|++||.|.+.+.
T Consensus 236 ~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~ 288 (460)
T PTZ00327 236 KRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPG 288 (460)
T ss_pred CCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccC
Confidence 11235678999999988765 7999999999999999999998865
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=313.19 Aligned_cols=257 Identities=26% Similarity=0.300 Sum_probs=187.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeeeeEecccccccchhhcccccccC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~--v~~--------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.| +
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~----------------~ 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY----------------N 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE----------------C
Confidence 577 9999999999999999998632 111 12245555554444443 3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999862 22222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~ 1005 (1384)
. +..+...|...+...+ .-.+|++++||++|. ||..||..|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2223333333332211 124799999999996 788898888877654
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechh
Q 000626 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~k 1084 (1384)
+. .....||++.|..++++++.|.++.++|++|+|+.||.|.+++.++. ...+|..|+...... +.
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~----------~~ 259 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLE----------RV 259 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCC----------ce
Confidence 32 12356899999999999999999999999999999999998876442 234555555332211 11
Q ss_pred hhc-ccccceeeccccccccCCCceE
Q 000626 1085 QIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1085 ev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
++. +.+|-.+++.||.....|+++.
T Consensus 260 ~v~~a~aGDiv~i~gl~~i~~Gdtl~ 285 (594)
T TIGR01394 260 EIDEAGAGDIVAVAGLEDINIGETIA 285 (594)
T ss_pred ECCEECCCCEEEEeCCcccCCCCEEe
Confidence 222 2346666667777777777663
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=301.17 Aligned_cols=257 Identities=25% Similarity=0.331 Sum_probs=177.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|+|.++...++.+. ..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~ 75 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NR 75 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------Ce
Confidence 34599999999999999999996421 11223677776655554432 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ...+
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~~~--- 146 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DEEL--- 146 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HHHH---
Confidence 589999999999999999999999999999999999999999999999999999 778999999962 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCCh------------------hhHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1384)
+......+...|...++.. ..+||+|+||++|.|+ +.|++.
T Consensus 147 -----------~~~~~~~l~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~ 205 (409)
T CHL00071 147 -----------LELVELEVRELLSKYDFPG----------DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDA 205 (409)
T ss_pred -----------HHHHHHHHHHHHHHhCCCC----------CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHH
Confidence 1111234445565555531 3479999999999864 233333
Q ss_pred HHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece
Q 000626 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1384)
Q Consensus 999 L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~ 1078 (1384)
|..+++.+ .-....+|++.|..+|.++|.|++++|+|.+|+|++||.|+++|...... .+|++
T Consensus 206 l~~~~~~p---~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~--------------~~Vks 268 (409)
T CHL00071 206 VDSYIPTP---ERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKT--------------TTVTG 268 (409)
T ss_pred HHhhCCCC---CCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcE--------------EEEEE
Confidence 32221100 01124579999999999999999999999999999999998765422222 34455
Q ss_pred eeechhhhccc-cc--ceeeccccccccCCCceEEeCC
Q 000626 1079 TYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1079 ~~~~~kev~aa-~g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+++++..+..| +| +.+++.|++......+.+++.+
T Consensus 269 I~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 269 LEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 55555444433 23 4555556554334444444433
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-29 Score=297.22 Aligned_cols=257 Identities=23% Similarity=0.342 Sum_probs=180.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~ 75 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NR 75 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------Cc
Confidence 45699999999999999999986311 11224677777655444332 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+++..+|++|||||+..|+.+||.++|.++...++|.| ||+||||++. ....
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~--- 146 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHH---
Confidence 58999999999999999999999999999999999999999999999999999976 5899999862 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~~ 1006 (1384)
+......+...|..+++. +..++|||+||++|. |++.|++.|..+++.+
T Consensus 147 -----------~~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 147 -----------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred -----------HHHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 111112344445555442 235799999999995 5666666665543211
Q ss_pred HHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhh
Q 000626 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1384)
Q Consensus 1007 l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev 1086 (1384)
.-....+|++.|.++|.++|.|++++|+|.+|+|++||.|.+++.+... .++|+++++|+..+
T Consensus 206 ---~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~--------------~~~VksI~~~~~~v 268 (396)
T PRK12735 206 ---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQ--------------KTTVTGVEMFRKLL 268 (396)
T ss_pred ---CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCe--------------EEEEEEEEECCeEe
Confidence 1123457999999999999999999999999999999999887643222 34455556665555
Q ss_pred ccc---ccceeeccccccccCCCceEEeCC
Q 000626 1087 KAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1087 ~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
..| ..+.++++|++......+.+++.+
T Consensus 269 ~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 269 DEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred CEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 433 335555566654434444444443
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=303.39 Aligned_cols=259 Identities=25% Similarity=0.374 Sum_probs=183.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--c-----------------------------cccCceeEeeeeeEecccccc
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ--E-----------------------------GEAGGITQQIGATYFPAENIR 842 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~--~-----------------------------ge~gGITq~iga~~~~~~~i~ 842 (1384)
..+|+|+||+|||||||+++|++.... . ...+|+|.+++...+.+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~---- 81 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET---- 81 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec----
Confidence 356999999999999999999853211 0 11345555555444433
Q ss_pred cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC--CCCHHHHHHHHHHHhcCC-ceEEEEeec
Q 000626 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKV 919 (1384)
Q Consensus 843 ~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~~v-P~IVaINKi 919 (1384)
....|+|||||||.+|...+.++++.+|++|||||+++ |+.+||.+++.++...++ |+|||+|||
T Consensus 82 ------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 82 ------------DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred ------------CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 33469999999999999988899999999999999999 999999999999998887 589999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|++. |.. ..|......+...+...|+.. ..+++|||||++|.||.++...+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9862 210 111222233444454555431 24689999999999999876655
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000626 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1000 ~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.||..+.+.+.|. ...||++.|.++|.+.|.|++++|+|.+|+|++||.|++++++ ....
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~~~---------- 268 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--VVGE---------- 268 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--CeEE----------
Confidence 4444444444442 2357899999999999999999999999999999999987754 2334
Q ss_pred ccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000626 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1072 ~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
|+++++|+..+..| ..+.+.+.|++....-.+.+++.+
T Consensus 269 ----VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 269 ----VKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred ----EEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 44555555554433 335666666654333344444443
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=296.41 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=181.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. .
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~ 74 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------K 74 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------C
Confidence 345699999999999999999986321 11225677777665444332 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++..+++|+| ||+||||++. ....
T Consensus 75 ~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~~-- 146 (396)
T PRK00049 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL-- 146 (396)
T ss_pred eEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHHH--
Confidence 359999999999999999999999999999999999999999999999999999986 5899999862 0110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~ 1005 (1384)
+......+...|...|+. +..+||+|+||++|. |++.|++.|..+++.
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~ 204 (396)
T PRK00049 147 ------------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPT 204 (396)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCC
Confidence 111122344455555542 235799999999986 455666665543321
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000626 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
+ .-....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|...... .+|+++++++..
T Consensus 205 p---~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~--------------~~VksI~~~~~~ 267 (396)
T PRK00049 205 P---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQK--------------TTVTGVEMFRKL 267 (396)
T ss_pred C---CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCce--------------EEEEEEEECCcE
Confidence 1 11234679999999999999999999999999999999998876532223 345555666655
Q ss_pred hccc-cc--ceeeccccccccCCCceEEeC
Q 000626 1086 IKAA-QG--IKITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1086 v~aa-~g--v~i~~~gL~~~~aG~~l~v~~ 1112 (1384)
+..| +| +.+.++|++....-.+.+++.
T Consensus 268 ~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 268 LDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 5543 23 455556654433334444444
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=297.91 Aligned_cols=258 Identities=24% Similarity=0.354 Sum_probs=174.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
++.+|+|+||+|||||||+++|++... .....+|+|.++....+.+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~ 74 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------N 74 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------C
Confidence 445699999999999999999974311 11223677777654444322 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+.+++..+|++|||||+.+|+.+||.++|.++..+++|+| ||+||||++.. ..+
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~~-- 146 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL-- 146 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HHH--
Confidence 358999999999999999999999999999999999999999999999999999976 68999998620 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHHHHHHHH-----
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTMVE----- 1009 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~~~~l~e----- 1009 (1384)
+......+...|..+++. +..+++|++||++|. |...+...+..++.. +..
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~-l~~~~~~~ 203 (394)
T TIGR00485 147 ------------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDA-VDEYIPTP 203 (394)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHH-HHhcCCCC
Confidence 111112344455555442 234799999999986 444443322222211 111
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000626 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
.-....+|++.|..+|.++|.|++++|+|.+|+|++||.|++++... ....+|+++++++..+..|
T Consensus 204 ~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~~~a 269 (394)
T TIGR00485 204 ERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKD--------------TRKTTVTGVEMFRKELDEG 269 (394)
T ss_pred CCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCC--------------CcEEEEEEEEECCeEEEEE
Confidence 01124579999999999999999999999999999999998865321 1223455556655554433
Q ss_pred -cc--ceeeccccccccCCCceEEe
Q 000626 1090 -QG--IKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1090 -~g--v~i~~~gL~~~~aG~~l~v~ 1111 (1384)
+| +.+.+.|++......+.+++
T Consensus 270 ~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 270 RAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred CCCCEEEEEeCCccHHHCCccEEEe
Confidence 23 44445555433333344443
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=288.88 Aligned_cols=229 Identities=28% Similarity=0.350 Sum_probs=180.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeeeeEecccccccchhhcccccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
..++|| ++|+.|.|||||||.++|+... ....+.+|||+...+..+.+.....
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g---------- 73 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG---------- 73 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC----------
Confidence 357899 9999999999999999998421 1223458888887777666543110
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000626 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
+.+.|+|||||||.+|+-.++|.+..|.++||||||+.|++.||+-...++...++-+|.|||||||+ .++.
T Consensus 74 -~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Adp 145 (603)
T COG0481 74 -ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AADP 145 (603)
T ss_pred -CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCCH
Confidence 12459999999999999999999999999999999999999999999999999999999999999996 4554
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~ 1013 (1384)
.....+ +..+ .|+.. ...|.+||+||.||+++|+.|+..++.+- -..
T Consensus 146 ervk~e------------Ie~~------iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~~ 192 (603)
T COG0481 146 ERVKQE------------IEDI------IGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GDP 192 (603)
T ss_pred HHHHHH------------HHHH------hCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCC---CCC
Confidence 322111 1111 24432 36789999999999999999998877653 345
Q ss_pred ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCC
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP 1070 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p 1070 (1384)
+.|+++.|++++++..+|.++.++|.+|+|+.||.|.+.+++......--.+++|..
T Consensus 193 ~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~ 249 (603)
T COG0481 193 DAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKM 249 (603)
T ss_pred CCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCc
Confidence 778999999999999999999999999999999999988876433223334556653
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=283.40 Aligned_cols=272 Identities=24% Similarity=0.277 Sum_probs=196.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhccc---ccccCCCCEEEEeCCC
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPG 866 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~---~~~~~~~~i~~IDTPG 866 (1384)
..+|| |+|+.|||||||||++.|+..+-.-.+..-++.. .+-..+-.++|+++|-+ ...|+...|+|+||||
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER---vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAER---VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhh---hcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 46888 9999999999999999998643211110000000 00011111233333322 1245566799999999
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|.+|...+.|.++..|.|||||||.+|.+|||+-++.-+...+++.||||||||++. +..
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-------Arp------------- 137 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD-------ARP------------- 137 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-------CCH-------------
Confidence 999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHHHHHHhhhcccc
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTMVEKLTFRNE 1016 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~~l~e~l~~~~~ 1016 (1384)
...+..+..+|...|-+.+. -++|+|..||+.|. ++.-||+.|+.+.+.+. .+...|
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQ--------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~---~~~d~P 204 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQ--------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK---GDLDEP 204 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhh--------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC---CCCCCC
Confidence 22345566667666654332 35799999999884 56667777777766543 345678
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeechhhhc-cccccee
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 1094 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i 1094 (1384)
|++.|.-.-|...+|....|+|.+|++++|+.|.+....|.+ ..+|..||....++.+ ++. +..|-.+
T Consensus 205 lQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~----------ei~eA~AGDIV 274 (603)
T COG1217 205 LQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERI----------EIEEAEAGDIV 274 (603)
T ss_pred eEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeee----------ecccccccCEE
Confidence 999998888999999999999999999999999888766543 3455556544333322 223 3468888
Q ss_pred eccccccccCCCceE
Q 000626 1095 TAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1095 ~~~gL~~~~aG~~l~ 1109 (1384)
++.||+...+|+++.
T Consensus 275 aiaG~~~~~igdTi~ 289 (603)
T COG1217 275 AIAGLEDINIGDTIC 289 (603)
T ss_pred EEcCccccccccccc
Confidence 999999888888764
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=294.55 Aligned_cols=258 Identities=27% Similarity=0.399 Sum_probs=180.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeEeeeeeEeccccccc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t--~v~-----------------------------~ge~gGITq~iga~~~~~~~i~~ 843 (1384)
.+|+|+||+|||||||+++|++. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 45999999999999999999852 111 0123466666665555443
Q ss_pred chhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC---CCHHHHHHHHHHHhcCC-ceEEEEeec
Q 000626 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 919 (1384)
Q Consensus 844 ~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l~llk~~~v-P~IVaINKi 919 (1384)
...|+|||||||..|...+.+++..+|++|||||+++| ..+||.+++.++...++ |+|||+|||
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 24599999999999999999999999999999999999 88999999988887775 688999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|++ .|.. ..+......+...+...|+.. ..++||||||++|.||.++...+
T Consensus 152 Dl~-~~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSV-NYDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hcc-CccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 996 2311 111222233444455555431 34699999999999998755443
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000626 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1000 ~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.|+....+.+.|. ...||++.|.++|.+.|.|++++|+|.+|+|++||.|++++.+ ...
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~----------- 269 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--VSG----------- 269 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--cEE-----------
Confidence 3332233333332 2357899999999999999999999999999999999987653 223
Q ss_pred ccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000626 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1072 ~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
.|+++++++..+..| ..+.|.+.|++....-.+++++.+
T Consensus 270 ---~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 270 ---EVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred ---EEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 345555555554433 335556666654434445555443
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=280.03 Aligned_cols=249 Identities=29% Similarity=0.425 Sum_probs=196.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+|+.+||+|||||||+..|.+.. ......+|||+++|.++++.... .++|||+|||++|.
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i 64 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFI 64 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHH
Confidence 378999999999999999998754 33445689999999999887642 48999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..|++..|+|+|||++++|+++||.|||..|..++++. |||+||+|++.. + +...
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~ 123 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQ 123 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHH
Confidence 99999999999999999999999999999999999999887 999999999731 0 1122
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
.+.+|...+. | ...++|++|+.+|+||.+|.+.|..+.. ....+...+|+..|..+|.++|.
T Consensus 124 ~i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGv 185 (447)
T COG3276 124 KIKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGV 185 (447)
T ss_pred HHHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEeccc
Confidence 2334433332 1 2458899999999999999999987764 12234678899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc---ccccceeeccccccccCCCc
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTG 1107 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~---aa~gv~i~~~gL~~~~aG~~ 1107 (1384)
|||++|.+.+|.+++||.+++.|.+ ++++|++++.|...+. |++-|.+++.|.+.-..-++
T Consensus 186 GTVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG 249 (447)
T COG3276 186 GTVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERG 249 (447)
T ss_pred cEEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcc
Confidence 9999999999999999999987665 3456667766655444 44445566666644445566
Q ss_pred eEEeCCC
Q 000626 1108 LYVVGPD 1114 (1384)
Q Consensus 1108 l~v~~~e 1114 (1384)
+++++++
T Consensus 250 ~~L~~~~ 256 (447)
T COG3276 250 DWLLKPE 256 (447)
T ss_pred cEeccCC
Confidence 6665544
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=301.45 Aligned_cols=259 Identities=23% Similarity=0.255 Sum_probs=186.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------cccCceeEeeeeeEecccccccchhhcccccc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT--NVQE--------------GEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t--~v~~--------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
.++|+ |+|+||+|||||||+++|++. .+.. ...+|||.......+.|
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~--------------- 65 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW--------------- 65 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec---------------
Confidence 35787 999999999999999999962 2211 11345555554444443
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000626 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
....|+|||||||.+|..++.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 66 -~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 66 -NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred -CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 33469999999999999999999999999999999999999999999999999999999999999985 3333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHH
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~ 1003 (1384)
...+. .+...|...++.. ....+||+++||++|. ||..||+.|+.++
T Consensus 138 ~~vl~---------------ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVVD---------------QVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHHH---------------HHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 33222 2222232222211 1134799999999998 5777777777766
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeec
Q 000626 1004 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1004 ~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
+.+. .....||++.|..++++++.|.++.++|++|+|+.||.|++++..+.. ..+|..|+......
T Consensus 195 P~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~---------- 261 (607)
T PRK10218 195 PAPD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLE---------- 261 (607)
T ss_pred CCCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCC----------
Confidence 5432 133567999999999999999999999999999999999887653321 23444443222111
Q ss_pred hhhhc-ccccceeeccccccccCCCceE
Q 000626 1083 HKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1083 ~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+..+. +.+|-.+++.||..+.+|+++.
T Consensus 262 ~~~v~~a~AGdIvai~gl~~~~~GdTl~ 289 (607)
T PRK10218 262 RIETDLAEAGDIVAITGLGELNISDTVC 289 (607)
T ss_pred ceECCEEcCCCEEEEECccccccCcEEe
Confidence 11222 3357677777888777787763
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=283.52 Aligned_cols=236 Identities=21% Similarity=0.291 Sum_probs=148.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccccc---------cCcee---EeeeeeEecc-cccccchhhccc---ccccCCC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGE---------AGGIT---QQIGATYFPA-ENIRERTRELKA---NATLKVP 857 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~ge---------~gGIT---q~iga~~~~~-~~i~~~~~~i~~---~~~~~~~ 857 (1384)
.|+|+||+|||||||+++|++.. +.... ..|.+ ..+. +.+.+ ...+.|..++.. .+.+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~-~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLA-LLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeee-eeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999998532 11100 01111 0000 11111 111122222211 1223445
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++| +|||+||||++. |. .. .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~-~~----~~---~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD-YD----EE---V 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc-ch----HH---H
Confidence 699999999999999999999999999999999999999999999999998875 788999999962 21 00 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh----
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---- 1012 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~---- 1012 (1384)
|......+...+...++ ..+++||+||++|+||..+...+.|+-...|.+.|.
T Consensus 153 -----------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~ 209 (406)
T TIGR02034 153 -----------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEV 209 (406)
T ss_pred -----------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCC
Confidence 11111222223333333 246899999999999986543322221122222221
Q ss_pred ----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000626 1013 ----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 1013 ----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
...++++.|..++.....+..+.|+|.+|+|++||.|++++.+ ..++|+++
T Consensus 210 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI 264 (406)
T TIGR02034 210 ERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--RSSRVARI 264 (406)
T ss_pred CCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--cEEEEEEE
Confidence 2356888888876543323336799999999999999987643 23444443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=289.91 Aligned_cols=350 Identities=23% Similarity=0.282 Sum_probs=220.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhcccc---cccCC-CCEEEEe
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKAN---ATLKV-PGLLVID 863 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~~---~~~~~-~~i~~ID 863 (1384)
..++|| |+|+||+|||||||+++|+...-.....|. .+-|+++..|.. .++|+++++.. +.|.. ..|+|||
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~--v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGE--VHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCcc--ccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 567888 999999999999999999854322222111 122333333321 12333333221 23442 5799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000626 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|+..+.|+++.+|+||+|||+..|+++||...|+++..+++|.|+++||||++ .++|...+.+....
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~-------~a~~~~~~~~l~~~ 155 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL-------GADFYLVVEQLKER 155 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc-------ccChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 45555555443322
Q ss_pred HHH-------------HH--------------H-----------HHHHH--------HHHHHHHcCC-chhhhhcccC--
Q 000626 944 VQN-------------EF--------------N-----------MRLVQ--------IVTQLKEQGM-NTELYYKNKD-- 974 (1384)
Q Consensus 944 v~~-------------ef--------------~-----------~~i~~--------I~~~L~~~Gl-~~e~~~~~~d-- 974 (1384)
+.. .| . ..... ++..+.+... ..+.|.....
T Consensus 156 l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~ 235 (697)
T COG0480 156 LGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPT 235 (697)
T ss_pred hCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCcc
Confidence 211 00 0 00000 0000000000 0001111100
Q ss_pred -------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh-----------------hhcccccceEEEEE
Q 000626 975 -------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------LTFRNELQCTVLEV 1024 (1384)
Q Consensus 975 -------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-----------------l~~~~~~~~~VlEv 1024 (1384)
-+..+|+++.||..+-|+..||+.++.+++.++... .....|+.+.|+.+
T Consensus 236 ~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi 315 (697)
T COG0480 236 EEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKI 315 (697)
T ss_pred HHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEe
Confidence 134789999999999999999999999987653321 11245688899999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccC
Q 000626 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~a 1104 (1384)
...+..|....++|++|+|+.|+.|+..+.+ ...+|-.|+.++.... .....+ ..|..+++.||..+..
T Consensus 316 ~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~~-------~~v~~~--~AG~I~a~~Gl~~~~t 384 (697)
T COG0480 316 MTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNER-------EEVDEV--PAGDIVALVGLKDATT 384 (697)
T ss_pred EecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCce-------eecccc--cCccEEEEEccccccc
Confidence 9988889988899999999999988766543 1223333332222111 111122 2466788889999888
Q ss_pred CCceEEeCCCccHHHH--------------HHHHHHHHHHHHhhhhccCCceEEEeC---------CcC--cHHHHHHHh
Q 000626 1105 GTGLYVVGPDDDLEDV--------------KEEAMEDMKSVMSRIDKSGEGVCVQAS---------TLG--SLEALLEFL 1159 (1384)
Q Consensus 1105 G~~l~v~~~e~~~~~~--------------~~~~~~~~~~~~~~i~~~~~gvivkad---------t~G--SlEAl~~~L 1159 (1384)
|+++...+..-..+.+ ...-+..|...|+++...+-.+.|.-| -.| .||-+++-|
T Consensus 385 GdTl~~~~~~v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl 464 (697)
T COG0480 385 GDTLCDENKPVILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRL 464 (697)
T ss_pred CCeeecCCCccccccccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHH
Confidence 9888755411001100 112234566667777666656666553 234 377777666
Q ss_pred c
Q 000626 1160 K 1160 (1384)
Q Consensus 1160 ~ 1160 (1384)
+
T Consensus 465 ~ 465 (697)
T COG0480 465 K 465 (697)
T ss_pred H
Confidence 5
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=291.84 Aligned_cols=213 Identities=29% Similarity=0.358 Sum_probs=162.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeEeeeeeEecccccccchhhccccccc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~ 854 (1384)
.++|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 56888 9999999999999999998632 111 123455555544444332100 0
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....|+|||||||.+|...+.++++.||++|||||+++|++.||..+|.++...++|+|+|+||||+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123589999999999999999999999999999999999999999999999888999999999999852 2211
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~ 1014 (1384)
..+ ..+... .++. ...+|++||++|.||.+|+.+|..+++.+.. ...
T Consensus 145 ~v~---------------~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~---~~~ 191 (600)
T PRK05433 145 RVK---------------QEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG---DPD 191 (600)
T ss_pred HHH---------------HHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCccccC---CCC
Confidence 110 111111 1221 1258999999999999999999887765421 345
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000626 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
.++++.|+++++++++|.++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 67999999999999999999999999999999999887765
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-27 Score=279.91 Aligned_cols=225 Identities=25% Similarity=0.286 Sum_probs=162.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEeccccccc------chhhcccc----cccCCCCEE
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRE------RTRELKAN----ATLKVPGLL 860 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~~i~~------~~~~i~~~----~~~~~~~i~ 860 (1384)
+.+|+|+||+|||||||+++|.+... .....+|+|..+|..++.+..... .+....+. .......|+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45699999999999999999976432 223357899998876654321000 00000000 001134699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHH
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
|||||||..|...+.++++.+|++|||||+++|+ ++||.+++.++..+++ |+|||+||||++. ... +
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~-------~~~---~- 152 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS-------KEK---A- 152 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC-------HHH---H-
Confidence 9999999999999999999999999999999998 9999999999988886 5899999999862 100 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~ 1018 (1384)
...+..+...+... +...+++||+||++|.||+.|+++|..+++.+ .-....+++
T Consensus 153 ----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 153 ----------LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred ----------HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 01112222222211 11346999999999999999999998655322 112356799
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccC
Q 000626 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1019 ~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
+.|.++|.+.| +|+|+.|.|.+|+|++||.|.+++.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccC
Confidence 99999998776 5779999999999999999998765
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=290.10 Aligned_cols=212 Identities=26% Similarity=0.337 Sum_probs=160.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------cccCceeEeeeeeEecccccccchhhcccccccC
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
++|| |+|+||+|||||||+++|++... .. ...+|||.......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 4787 99999999999999999986421 10 123456655544444332100 00
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||.+|..++.+++..||++|||||+++|++.||..+|..+...++|+|+|+||||+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999988888999999999999852 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~ 1015 (1384)
.+ ..+... .++. ...++++||++|.||.+|+.+|...++.+.. ....
T Consensus 142 ~~---------------~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~---~~~~ 188 (595)
T TIGR01393 142 VK---------------KEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKG---DPDA 188 (595)
T ss_pred HH---------------HHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC---CCCC
Confidence 00 111111 1221 1258999999999999999999877654321 2456
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000626 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
|+++.|+.+++++++|.++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 7999999999999999999999999999999999887764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=280.96 Aligned_cols=232 Identities=22% Similarity=0.276 Sum_probs=147.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--ccccc---------cCceeE-ee-eeeEecc-cccccchhhcccc---cccCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQEGE---------AGGITQ-QI-GATYFPA-ENIRERTRELKAN---ATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~--v~~ge---------~gGITq-~i-ga~~~~~-~~i~~~~~~i~~~---~~~~~ 856 (1384)
.+.|+|+||+|||||||+++|++.. +.... ..|.|. .+ .++++.+ ...+.|..++... +.+..
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 3569999999999999999998543 11100 011110 00 0001111 1111222222211 22334
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~-~~~----~--- 178 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD-YSE----E--- 178 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc-chh----H---
Confidence 579999999999999999999999999999999999999999999999998886 6888999999962 211 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh---
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--- 1012 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--- 1012 (1384)
.+......+...+...++ ...++|||+||++|.||..+...+.|+....+.+.|.
T Consensus 179 -----------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~ 236 (474)
T PRK05124 179 -----------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVD 236 (474)
T ss_pred -----------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcC
Confidence 011111122222333221 1247999999999999987654322222222222221
Q ss_pred -----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000626 1013 -----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1013 -----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
...++++.|..++........+.|+|.+|+|++||.|++++++
T Consensus 237 ~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~ 284 (474)
T PRK05124 237 IQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG 284 (474)
T ss_pred CCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC
Confidence 2346888888876532222225699999999999999987654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=258.90 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=170.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeEeeeeeEeccccc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v---------------------------------~~ge~gGITq~iga~~~~~~~i 841 (1384)
..++.||+||.|||||+++|++..- +..+..|||+++..-||.+..
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K- 85 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK- 85 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc-
Confidence 3489999999999999999986321 111235777777776666543
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecc
Q 000626 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 920 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD 920 (1384)
+.|.|.|||||+.|+.+|..|++-||++||+|||.+|+..||+.|..++..+|+ .+||++||||
T Consensus 86 ---------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 86 ---------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred ---------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeec
Confidence 469999999999999999999999999999999999999999999999999997 5788999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
|+ +|++ ..|.........+....|+. .+.+||+||+.|+||-.--..+-
T Consensus 151 Lv-dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mp 199 (431)
T COG2895 151 LV-DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMP 199 (431)
T ss_pred cc-ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCC
Confidence 98 4432 23444444455555555653 35899999999999977666666
Q ss_pred HHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCC
Q 000626 1001 QWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1068 (1384)
Q Consensus 1001 ~~~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p 1068 (1384)
|+..+++++.|.. ..+|+++|..|..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 200 WY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 200 WYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred cccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 6666666665532 345899998876533222345688999999999999998876 34566666554
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=273.01 Aligned_cols=227 Identities=26% Similarity=0.286 Sum_probs=161.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEecccccc------cchhhccc---ccc-cCCCCE
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR------ERTRELKA---NAT-LKVPGL 859 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~~i~------~~~~~i~~---~~~-~~~~~i 859 (1384)
++.+|+|+||+|||||||+++|.+... .....+|+|..++...+.+.... ........ ... .....|
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 445699999999999999999976422 22335789998886554442100 00000000 000 002469
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHH
Q 000626 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+|||||||..|...+.+++..+|++|||||+.+|+ .++|.++|.++...++ |+|||+||+|++.. ..+
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~------~~~---- 157 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK------ERA---- 157 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc------hhH----
Confidence 99999999999999999999999999999999998 8999999999988886 68999999999621 000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccccc
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 1017 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~ 1017 (1384)
...+..+...+... +...+++|++||++|.||+.|+.+|..+++.+. -....++
T Consensus 158 -----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~---~~~~~~~ 211 (411)
T PRK04000 158 -----------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE---RDLDKPP 211 (411)
T ss_pred -----------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC---CCCCCCc
Confidence 00111222222111 013468999999999999999999876553221 1124678
Q ss_pred ceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccCC
Q 000626 1018 QCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1018 ~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
++.|.++|.+.| +|+++.|+|.+|+|++||.|.+++.+
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~ 257 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGI 257 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCc
Confidence 999999998776 46799999999999999999988653
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=267.32 Aligned_cols=227 Identities=26% Similarity=0.439 Sum_probs=171.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeEeeeeeEeccccc
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v-----------------------------~~ge~gGITq~iga~~~~~~~i 841 (1384)
....++|+||||+|||||+++|++.- + ...+.+|+|.+++.++|...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 45568999999999999999998521 1 11223555555555554422
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceE
Q 000626 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 913 (1384)
...++|||+|||.+|+..+..|...+|++|||||++.| ...||++|..+|+.+|+ .+|
T Consensus 254 --------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 254 --------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred --------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 24699999999999999999999999999999999875 34799999999999996 689
Q ss_pred EEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCCceeEEeCCCcCCCCh
Q 000626 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1384)
Q Consensus 914 VaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L-~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI 992 (1384)
|+|||||++ +|.+. +|......+..+| ...||. ...+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~----------es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFK----------ESSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCcc----------cCCcceEecccccCCcc
Confidence 999999998 78654 3444445555666 556664 24579999999999998
Q ss_pred hhH--HHHHHHHHH-HHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEE
Q 000626 993 PDL--LLLLVQWTQ-KTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061 (1384)
Q Consensus 993 ~eL--l~~L~~~~~-~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~ 1061 (1384)
-.. ...+..|+. ++|+..+. +..||+++|++++...+.|.+++|.|.+|.|+.||.|.++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 654 224444443 34444442 2347999999999999999999999999999999999887654 2344
Q ss_pred eeecc
Q 000626 1062 IRALL 1066 (1384)
Q Consensus 1062 Ir~Ll 1066 (1384)
|+.|.
T Consensus 449 vk~l~ 453 (603)
T KOG0458|consen 449 VKGLT 453 (603)
T ss_pred EEeee
Confidence 55554
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=248.06 Aligned_cols=165 Identities=39% Similarity=0.553 Sum_probs=124.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeeeeEecccccccchhhcccccccCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~------------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
++|+|+||+|||||||+++|++..... ...+++|..++...+.. .+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~ 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENN 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------cccc
Confidence 359999999999999999998543221 12245666655554440 1234
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
..|+|||||||.+|...+.+++..+|+||||||+.+|+++||.++|.++..+++|+|||+||||++. .
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-------~----- 137 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-------K----- 137 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-------H-----
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-------h-----
Confidence 5699999999999999999999999999999999999999999999999999999999999999861 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-HHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQ-LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~-L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
++...+..+... +...++... ..+|+||+||++|.||..|++.|..+++
T Consensus 138 ----------~~~~~~~~~~~~l~~~~~~~~~---------~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 ----------ELEEIIEEIKEKLLKEYGENGE---------EIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTSTTT---------STEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ----------hHHHHHHHHHHHhccccccCcc---------ccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122223333322 333333210 3689999999999999999999987764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=280.27 Aligned_cols=238 Identities=20% Similarity=0.260 Sum_probs=151.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccCceeEe-eee-eEec-ccccccchhhccc---ccccCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQQ-IGA-TYFP-AENIRERTRELKA---NATLKVP 857 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~g-----------e~gGITq~-iga-~~~~-~~~i~~~~~~i~~---~~~~~~~ 857 (1384)
..|+|+||+|||||||+++|++..-... ...|.|.. +.. +.+. ....+.++.++.. .+.+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 3489999999999999999986431100 01222211 110 0111 1111222222221 1234456
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~---- 175 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E---- 175 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H----
Confidence 79999999999999999999999999999999999999999999999998885 6788999999962 211 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh----
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---- 1012 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~---- 1012 (1384)
.+......+...+...++ ..+++||+||++|.||.++...+.|+....+.+.|.
T Consensus 176 ----------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~ 233 (632)
T PRK05506 176 ----------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI 233 (632)
T ss_pred ----------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC
Confidence 111112223333444443 246899999999999986443222222222222221
Q ss_pred ----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000626 1013 ----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 1013 ----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
...|+++.|..++.....+..+.|+|.+|+|++||.|++++++ ...+|+++
T Consensus 234 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI 288 (632)
T PRK05506 234 ASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--KTSRVKRI 288 (632)
T ss_pred CCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--ceEEEEEE
Confidence 2456888888876532112226799999999999999987654 23444444
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=251.51 Aligned_cols=284 Identities=23% Similarity=0.343 Sum_probs=194.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeeeeEecccc--cccchhhcccc-----c
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAEN--IRERTRELKAN-----A 852 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge--------------~gGITq~iga~~~~~~~--i~~~~~~i~~~-----~ 852 (1384)
..+|+++||||||||||+.+|..+...+|. .+|.|.++....+-+.. ......++... .
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 356999999999999999999765554443 14445444333222221 11000000000 0
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
.-...-+.|+||-||+.|.....||+- ..|+.+|||.|++|++..|.+||.++....+|+|||+||||+. +.
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~------~d 270 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV------PD 270 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC------cH
Confidence 011234899999999999999988864 5899999999999999999999999999999999999999997 34
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCch---hhhh------cccCCCC-ceeEEeCCCcCCCChhhHHHHHH
Q 000626 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT---ELYY------KNKDRGE-TFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~---e~~~------~~~d~g~-~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..|...+.. |...|...+-.+ .... .....+. .+|||.+|+.||+|++-|..++.
T Consensus 271 dr~~~v~~e---------------i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEE---------------ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHH---------------HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 444333332 222222211000 0000 0001233 78999999999999966655554
Q ss_pred HHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceee
Q 000626 1001 QWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTY 1080 (1384)
Q Consensus 1001 ~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~ 1080 (1384)
+++..- ......+|.+.|.++|.+.|.|+++.|.|.+|.|+.||++.+++.. .+.++++.|+++.
T Consensus 336 -~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSIe 400 (527)
T COG5258 336 -LLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSIE 400 (527)
T ss_pred -hCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEEE
Confidence 343321 3456788999999999999999999999999999999999987644 2345677899999
Q ss_pred echhhhcccc-c--ceeeccccccccCCCceEEeCC
Q 000626 1081 LHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1081 ~~~kev~aa~-g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+||-.|.+|. | +.|++.|++.-....+|+++..
T Consensus 401 mh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 401 MHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 9998887764 3 5666777776555666666553
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=279.64 Aligned_cols=285 Identities=24% Similarity=0.249 Sum_probs=187.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---cc---------------ccCceeEeeeeeEecccccccchhhcc
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EG---------------EAGGITQQIGATYFPAENIRERTRELK 849 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~g---------------e~gGITq~iga~~~~~~~i~~~~~~i~ 849 (1384)
...++|| |+|+||+|||||||+++|++..-. .+ ..+|||.+...+.+.
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~------------ 71 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF------------ 71 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE------------
Confidence 3567888 999999999999999999842211 00 124444444433333
Q ss_pred cccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCC
Q 000626 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 850 ~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
|....|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 72 ----~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 72 ----WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred ----ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 3445799999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHH
Q 000626 930 NAPIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLK 960 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~-------------------------------------------------ef~~~i~~I~~~L~ 960 (1384)
+++...+......+.. ........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 2233322222111000 00000011111111
Q ss_pred Hc----------C--Cchhhhhc----ccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh--------------
Q 000626 961 EQ----------G--MNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-------------- 1010 (1384)
Q Consensus 961 ~~----------G--l~~e~~~~----~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-------------- 1010 (1384)
+. | +..+.+.. ..-.+..+|++..||+++.||..||+.|+.+++.+....
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 00 0 00000000 001246789999999999999999999999987654210
Q ss_pred ---hhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc
Q 000626 1011 ---LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1384)
Q Consensus 1011 ---l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~ 1087 (1384)
.++..++.+.|+.+...+..|.+..++|++|+|+.||.|..+.... ..+|..|+.+.... ...|.
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~--~eki~~l~~~~g~~----------~~~v~ 368 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGK--KERIGRILQMHANK----------REEIK 368 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCc--eeEeceeEEeccCC----------ccccc
Confidence 1234568889999999889999999999999999999886443221 12232332221111 11122
Q ss_pred -ccccceeeccccccccCCCceE
Q 000626 1088 -AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1088 -aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+.+|..+++.||.....|++|.
T Consensus 369 ~~~aGdI~~i~gl~~~~~GdtL~ 391 (693)
T PRK00007 369 EVRAGDIAAAVGLKDTTTGDTLC 391 (693)
T ss_pred ccCCCcEEEEeCCccCCcCCEee
Confidence 2357777778887777787763
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=277.92 Aligned_cols=298 Identities=22% Similarity=0.249 Sum_probs=190.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccc-ccccchhhccc---ccccCCCCEEEEeC
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDT 864 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~IDT 864 (1384)
..++|| |+|+||+|||||||+++|++..-.....+.+ +-|.+...+. ..+.+..++.. ...|....|+||||
T Consensus 5 ~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v--~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 5 LMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEV--EDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred cccccE--EEEECCCCCcchhHHHHHHHhcCCccccccc--cCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 346777 9999999999999999998532111000100 0011111110 00112222211 12344457999999
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|||.+|..++.++++.+|++|||||++.|++.+|..+|.++...++|+|||+||+|+. ++++...+......+
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~-------~~~~~~~~~~i~~~l 153 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV-------GADLFKVLEDIEERF 153 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 344544444322111
Q ss_pred HH---------------------------------------------HHH----HHHHHHHHHHHHcCC-chhhhhccc-
Q 000626 945 QN---------------------------------------------EFN----MRLVQIVTQLKEQGM-NTELYYKNK- 973 (1384)
Q Consensus 945 ~~---------------------------------------------ef~----~~i~~I~~~L~~~Gl-~~e~~~~~~- 973 (1384)
.. .+. .....++..+....= ..+.|+.+.
T Consensus 154 ~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~ 233 (687)
T PRK13351 154 GKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEE 233 (687)
T ss_pred CCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCC
Confidence 00 000 001111111111100 001111110
Q ss_pred --------------CCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH---------------hhhcccccceEEEEE
Q 000626 974 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------KLTFRNELQCTVLEV 1024 (1384)
Q Consensus 974 --------------d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---------------~l~~~~~~~~~VlEv 1024 (1384)
..+..+|++++||++|.||..||+.|+.+++.+... ..+...++.+.|+.+
T Consensus 234 l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 234 LSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 124678999999999999999999999998766421 012345688999999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccccc
Q 000626 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAI 1103 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~ 1103 (1384)
...++.|.++.++|++|+|+.||.|.+++.+.. .+.+|..+.... .....+ +.+|..+++.||....
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~----------~~~v~~--~~aGdI~~i~gl~~~~ 381 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNK----------REEVDR--AKAGDIVAVAGLKELE 381 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCC----------eeECCc--cCCCCEEEEECcccCc
Confidence 999999999999999999999999987765421 223333222111 111122 2346677788888877
Q ss_pred CCCceE
Q 000626 1104 AGTGLY 1109 (1384)
Q Consensus 1104 aG~~l~ 1109 (1384)
.|++|.
T Consensus 382 ~gdtl~ 387 (687)
T PRK13351 382 TGDTLH 387 (687)
T ss_pred cCCEEe
Confidence 888774
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=278.18 Aligned_cols=284 Identities=23% Similarity=0.225 Sum_probs=185.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---c---------------cccCceeEeeeeeEecccccccchhhccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---E---------------GEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~---------------ge~gGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
...+|| |+|+||+|||||||+++|++..-. . ...+|||.++...++.|
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~------------ 70 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW------------ 70 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE------------
Confidence 346777 999999999999999999852110 0 01344555544444433
Q ss_pred ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000626 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
....|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|+++...++|+|||+||||+..
T Consensus 71 ----~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 71 ----KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred ----CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 345699999999999999999999999999999999999999999999999999999999999999972
Q ss_pred chHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHHH
Q 000626 931 APIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLKE 961 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~~-------------------------------------------------ef~~~i~~I~~~L~~ 961 (1384)
+++...+......+.. ........++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222221111100 000000111111100
Q ss_pred ------------cCCchhhhh----cccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh---------------
Q 000626 962 ------------QGMNTELYY----KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1010 (1384)
Q Consensus 962 ------------~Gl~~e~~~----~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~--------------- 1010 (1384)
..+..+... +....+..+|++.+||++|.||..||+.|+.+++.+....
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 001000000 0001246689999999999999999999999887654210
Q ss_pred -hhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCC-ceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000626 1011 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1011 -l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g-~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
.++..++.+.|+.+.+.+..|.++.++|++|+|+.||.|..+..+. ..+.+|..|.... +....+ +
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~----------~~~v~~--~ 367 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANK----------REEIKE--V 367 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCC----------cccccc--c
Confidence 1234568889999999889999999999999999999886543321 1122332222111 011111 2
Q ss_pred cccceeeccccccccCCCceE
Q 000626 1089 AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1089 a~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
.+|..+.+.||.....|++|.
T Consensus 368 ~aGdI~~i~gl~~~~~gdtl~ 388 (691)
T PRK12739 368 YAGDIAAAVGLKDTTTGDTLC 388 (691)
T ss_pred CCCCEEEEeCCCcccCCCEEe
Confidence 346677777887777787774
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=278.12 Aligned_cols=288 Identities=23% Similarity=0.260 Sum_probs=181.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEeccc-ccccchhhcccc---ccc----CCCCE
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAE-NIRERTRELKAN---ATL----KVPGL 859 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~-~i~~~~~~i~~~---~~~----~~~~i 859 (1384)
..++|| |+|+||+|||||||+++|++..-. .....| +++++.+. ..+.|..++... ..| ....|
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAG-----EQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcC-----cceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 467888 999999999999999999853211 100000 01111111 111222222221 111 13458
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHH
Q 000626 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||+. .++|...+.
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~-------~~~~~~~~~- 161 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL-------IKELKLTPQ- 161 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh-------cccccCCHH-
Confidence 999999999999999999999999999999999999999999999988899999999999986 233322222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCCceeEEeCCCcCCCChh------------------------
Q 000626 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP------------------------ 993 (1384)
Q Consensus 940 q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~--~~~~~d~g~~v~iVpvSA~tGeGI~------------------------ 993 (1384)
.++..|...+..+...+..+. ...+ .|.... ..-.+++.||+.|+|+.
T Consensus 162 ---~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~~~--~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 235 (731)
T PRK07560 162 ---EMQQRLLKIIKDVNKLIKGMA-PEEFKEKWKVDV--EDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQK 235 (731)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh-hhhhhcceeecC--CCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHH
Confidence 222333332333322222211 0111 011100 11246788999998886
Q ss_pred ----------hHHHHHHHHHHHHHHHh----------------------hhcccccceEEEEEEEEcCcceEEEEEEEee
Q 000626 994 ----------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041 (1384)
Q Consensus 994 ----------eLl~~L~~~~~~~l~e~----------------------l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G 1041 (1384)
.||+.|+.+++.+.... .+...++.+.|+.+...+++|.++.++|++|
T Consensus 236 ~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sG 315 (731)
T PRK07560 236 ELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSG 315 (731)
T ss_pred HHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEe
Confidence 67788877776654210 1223467888999999999999999999999
Q ss_pred eecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000626 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1042 ~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+|+.||.|.+.+.+.. .+|..|....... ...+. +.+|..+++.||.....|++|.
T Consensus 316 tL~~Gd~v~~~~~~~~--~~v~~i~~~~g~~----------~~~v~~a~AGdIv~i~gl~~~~~GdtL~ 372 (731)
T PRK07560 316 TLRKGQEVYLVGAKKK--NRVQQVGIYMGPE----------REEVEEIPAGNIAAVTGLKDARAGETVV 372 (731)
T ss_pred EEcCCCEEEEcCCCCc--eEeheehhhhcCC----------CceeeeECCCCEEEEEcccccccCCEEe
Confidence 9999999988765422 2333332111000 11122 2246677777887777787764
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=275.09 Aligned_cols=285 Identities=23% Similarity=0.223 Sum_probs=187.6
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc--------c----------ccCceeEeeeeeEecccccccchhhcc
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE--------G----------EAGGITQQIGATYFPAENIRERTRELK 849 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~--------g----------e~gGITq~iga~~~~~~~i~~~~~~i~ 849 (1384)
...++|| |+|+||+|||||||+++|++..-.. + ..+|||.++....+.
T Consensus 6 ~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~------------ 71 (689)
T TIGR00484 6 DLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF------------ 71 (689)
T ss_pred ccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE------------
Confidence 3567888 9999999999999999998522110 0 123444444444443
Q ss_pred cccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCC
Q 000626 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 850 ~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
|+...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|+++...++|+|||+||||+..
T Consensus 72 ----~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~------ 141 (689)
T TIGR00484 72 ----WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG------ 141 (689)
T ss_pred ----ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 3345699999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHhhHHHH--------------------------------------------HHHH----HHHHHHHHH---
Q 000626 930 NAPIVKAIKQQNTDVQ--------------------------------------------NEFN----MRLVQIVTQ--- 958 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~--------------------------------------------~ef~----~~i~~I~~~--- 958 (1384)
+++...+......+. ..+. .....++..
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 142 -ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred -CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 233322222111100 0000 000111111
Q ss_pred ----HHHc-----CCchhhhhc----ccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH----------------
Q 000626 959 ----LKEQ-----GMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------- 1009 (1384)
Q Consensus 959 ----L~~~-----Gl~~e~~~~----~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---------------- 1009 (1384)
|.+. .+..+.++. ....+..+|++..||++|.||..||+.|+.+++.+...
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 300 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIER 300 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeee
Confidence 1100 011111110 01135678999999999999999999999998765421
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC-CceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000626 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~-g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
......++.+.|+.+.+.+..|.++.++|++|+|+.||.|...... ...+.+|..+. .... ..... +
T Consensus 301 ~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~---g~~~-------~~v~~--~ 368 (689)
T TIGR00484 301 KASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMH---ANNR-------EEIKE--V 368 (689)
T ss_pred cCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEee---cCCc-------ccccc--c
Confidence 0122456888999999999999999999999999999998754322 11222332222 1110 01111 2
Q ss_pred cccceeeccccccccCCCceE
Q 000626 1089 AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1089 a~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
.+|..+++.||.....|++|.
T Consensus 369 ~aGdI~~i~gl~~~~~gdtl~ 389 (689)
T TIGR00484 369 RAGDICAAIGLKDTTTGDTLC 389 (689)
T ss_pred CCCCEEEEcCCCCCCCCCEEe
Confidence 356677778888777788774
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=266.60 Aligned_cols=296 Identities=18% Similarity=0.232 Sum_probs=188.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccc-cccchhhccc---ccccCCCCEEEEe
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAEN-IRERTRELKA---NATLKVPGLLVID 863 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~ID 863 (1384)
..+|| |+|+||+|||||||+++|++..-.....|.+... -..+...+.. .+.++.++.. .+.|+...|+|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 46777 9999999999999999998532221122211100 0001111111 1223333322 2345556799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000626 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|...+.++++.+|++|||||+..|+..||..+|.++...++|+|||+||||+. ++++...+......
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~~~ 158 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIEEV 158 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 33443333222111
Q ss_pred HHHH---------------------------H----------------------H-----HHHHHHHHHH---HHcCCch
Q 000626 944 VQNE---------------------------F----------------------N-----MRLVQIVTQL---KEQGMNT 966 (1384)
Q Consensus 944 v~~e---------------------------f----------------------~-----~~i~~I~~~L---~~~Gl~~ 966 (1384)
+... | . ..+.++...+ ...+..
T Consensus 159 l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~- 237 (526)
T PRK00741 159 LGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE- 237 (526)
T ss_pred hCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc-
Confidence 1000 0 0 0000000000 000000
Q ss_pred hhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH-----hhhc-ccccceEEEEEEE---EcCcceEEEEE
Q 000626 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLTF-RNELQCTVLEVKV---IEGHGTTIDVV 1037 (1384)
Q Consensus 967 e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e-----~l~~-~~~~~~~VlEvk~---~~G~G~vi~~i 1037 (1384)
.....-.-+..+|+++.||++|.||..||+.|+.+++.+... .+.+ ..++.+.|+.+.. .+.+|.++.++
T Consensus 238 -~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 238 -FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred -hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 000000125678999999999999999999999998766421 1111 3458888888873 45889999999
Q ss_pred EEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000626 1038 LVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1038 V~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
|++|+|+.|+.|....++.. .+.++..++... ...|. +.+|-.+++.++....+|++|.
T Consensus 317 V~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~-------------~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTGKDVRISNALTFMAQD-------------REHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EeccEECCCCEEEeccCCceEEecceEEEecCC-------------ceECceeCCCCEEEEECCCCCccCCCcc
Confidence 99999999999876554321 111222222111 11222 3368888889999899999885
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=257.99 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=186.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccc-cccchhhccc---ccccCCCCEEEEe
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAEN-IRERTRELKA---NATLKVPGLLVID 863 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~ID 863 (1384)
.++|+ |+|+||+|||||||+++|+...-.....|.+... ...+...+.. .+.+..++.. .+.|+...|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45677 9999999999999999997532111111111000 0011122211 1222333322 2345566799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000626 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|...+.++++.+|++|||||+..|+..+|..+|.+++..++|+|||+||||+. .+++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~-------~~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD-------IRDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc-------CCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 22332222211111
Q ss_pred HHHH---------------------------H---------------------------HHHHHHHH---HHHHHc--CC
Q 000626 944 VQNE---------------------------F---------------------------NMRLVQIV---TQLKEQ--GM 964 (1384)
Q Consensus 944 v~~e---------------------------f---------------------------~~~i~~I~---~~L~~~--Gl 964 (1384)
+... | ...+..+. ..+... .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 0000 0 00000000 001110 00
Q ss_pred chhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh-----hh-cccccceEEEEEEE--E-cCcceEEE
Q 000626 965 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1035 (1384)
Q Consensus 965 ~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-----l~-~~~~~~~~VlEvk~--~-~G~G~vi~ 1035 (1384)
.... -.-+..+|+++.||+++.||..||+.|+.+++.+.... +. ...++.+.|+.+.. + ..+|.++.
T Consensus 240 ~~~~----~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAA----FHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHH----HhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 0000 11357789999999999999999999999987664211 11 13458899999876 5 47999999
Q ss_pred EEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000626 1036 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1036 ~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
++|++|+|+.|+.|....++.. .+|..++...... ...|. +.+|-.+.+.++.....|++|.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~~----------~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGKD--VVISDALTFMAGD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCCc--EEecchhhhhcCC----------ceEcceeCCCCEEEEECCCCcccCCEec
Confidence 9999999999999876544321 2233332211111 11222 3367788888998888898874
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=254.14 Aligned_cols=276 Identities=24% Similarity=0.319 Sum_probs=189.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--------c----------ccccCceeEeeeeeEecccccccchhhccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------Q----------EGEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v--------~----------~ge~gGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
-..+|| |.|+.|.|+|||||.+++++... . ..+.+|||++.+++++.|..
T Consensus 36 ~~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------- 103 (721)
T KOG0465|consen 36 LNKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------- 103 (721)
T ss_pred hhhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------
Confidence 347888 99999999999999999985321 1 12346788888888887763
Q ss_pred ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000626 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
..|+|||||||.+|+-.+.|++++.|+||||+|+..|++.||..+|++++.+++|+|++|||||+. .
T Consensus 104 ------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm-------G 170 (721)
T KOG0465|consen 104 ------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM-------G 170 (721)
T ss_pred ------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc-------C
Confidence 459999999999999999999999999999999999999999999999999999999999999997 3
Q ss_pred chHHHHHHHhhHHHH-------------------------------------------------------HHHHHHHHHH
Q 000626 931 APIVKAIKQQNTDVQ-------------------------------------------------------NEFNMRLVQI 955 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~-------------------------------------------------------~ef~~~i~~I 955 (1384)
+++..+|.+....+. +.+-+.+..+
T Consensus 171 a~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 171 ASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred CChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 555555554432221 1111111122
Q ss_pred HHHHHHcCCchhhhhcccC---------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH---hhh-----
Q 000626 956 VTQLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT----- 1012 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---~l~----- 1012 (1384)
...|.+ .|..... -+.++|+++.||+.+.||.-||+.++.+++.+..- .+.
T Consensus 251 DE~l~e------~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~ 324 (721)
T KOG0465|consen 251 DETLAE------MFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNS 324 (721)
T ss_pred hHHHHH------HHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCC
Confidence 222221 1211111 25789999999999999999999999999754311 111
Q ss_pred ---------c-ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeec
Q 000626 1013 ---------F-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1013 ---------~-~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
. .+||-+..+.+...+- |...+++|++|+|+.||+|.-.-++ .. .+|-.|+.++...
T Consensus 325 ~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg-KK-vrv~RL~rmHa~~---------- 391 (721)
T KOG0465|consen 325 KEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG-KK-VRVGRLVRMHAND---------- 391 (721)
T ss_pred ccceEeccCCCCCceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCC-ce-eEhHHHhHhcccc----------
Confidence 1 1245555554443333 8899999999999999998754332 22 2333344333211
Q ss_pred hhhhccc-ccceeeccccccccCCCceE
Q 000626 1083 HKQIKAA-QGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1083 ~kev~aa-~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
...|..+ .|..+++.|++ ...|++|.
T Consensus 392 medV~~v~AG~I~alfGid-casGDTft 418 (721)
T KOG0465|consen 392 MEDVNEVLAGDICALFGID-CASGDTFT 418 (721)
T ss_pred cchhhhhhccceeeeeccc-cccCceec
Confidence 1233332 46677777883 44576653
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-24 Score=235.51 Aligned_cols=242 Identities=25% Similarity=0.322 Sum_probs=177.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~-------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
|.+|.|+||+|+|||||..+|.... ......+|||.++|...+........ ... ..-+++||||||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parL----pq~---e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARL----PQG---EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccccc----Ccc---ccceeEEEeCCC
Confidence 4679999999999999999997421 23445689999999876654322110 000 012589999999
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|...+.....|+...|++|||||+..|.++||.++|-+...+-...|||+||||.... . |+..-
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE------~--------qr~sk-- 143 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE------N--------QRASK-- 143 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc------h--------hhhhH--
Confidence 9999999999999999999999999999999999998888887789999999998732 1 11111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC----CChhhHHHHHHHHHHHHHHHhhhcccccceEEE
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL 1022 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG----eGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~Vl 1022 (1384)
+......+..-|...+ ++++.|||++||..| ++|++|...|...+- ...-+...||-+.|.
T Consensus 144 -i~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if---~P~Rd~~gpflm~vD 208 (522)
T KOG0461|consen 144 -IEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF---EPKRDEEGPFLMAVD 208 (522)
T ss_pred -HHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc---CCCcCCCCCeEEEee
Confidence 1111223333444433 467899999999999 677777666543321 123345678999999
Q ss_pred EEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000626 1023 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1023 Evk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
..+.++|.|+|++|.|.+|.|+.|+.|-+...+ ..-+|+++.+++..|..+
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 999999999999999999999999998875322 122467777777776644
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=230.21 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=118.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhcccccccCCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~ 858 (1384)
.+|+|+||+|||||||+++|++.... ....+|+|.+.+...+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 46999999999999999999864211 112355665555444433 2346
Q ss_pred EEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHH
Q 000626 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 859 i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ....
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHHH----
Confidence 99999999999999999999999999999999999999999999999999998 789999999862 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhh
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1384)
+......+...|...|++. ..++|||+||++|.|+..
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112234566677777642 358999999999999753
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=257.38 Aligned_cols=289 Identities=23% Similarity=0.237 Sum_probs=178.7
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccc-ccccchhhccc---ccccCCCCEEEEeCCCCcchhHHHH
Q 000626 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 800 lGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
+||+|||||||+++|++........+.+ +-|.+...+. ..+.++.++.. .+.|....|+|||||||.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~--~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEV--EDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccc--cCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 6999999999999997532111000000 0111111111 11122222221 1234445699999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH----------
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ---------- 945 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~---------- 945 (1384)
+++..+|++|||||++.++..++..+|+.+...++|+|||+||+|+.. ..+...+......+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHHHHHCCCceeEEecc
Confidence 999999999999999999999999999999999999999999999862 222222222111000
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHc------------CCchhhhhc----cc
Q 000626 946 ------------------------------------NEFNMRLVQIVTQLKEQ------------GMNTELYYK----NK 973 (1384)
Q Consensus 946 ------------------------------------~ef~~~i~~I~~~L~~~------------Gl~~e~~~~----~~ 973 (1384)
.........++..+... .+..+.++. ..
T Consensus 152 ~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~ 231 (668)
T PRK12740 152 GEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKAT 231 (668)
T ss_pred cCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 00000001111111110 010010000 00
Q ss_pred CCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH--------------hhhcccccceEEEEEEEEcCcceEEEEEEE
Q 000626 974 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVKVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 974 d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e--------------~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~ 1039 (1384)
..+..+|++.+||++|.||..||+.|+.+++.+..- ..+...++.+.|+.+.+.++.|.++.++|+
T Consensus 232 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~ 311 (668)
T PRK12740 232 LAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVY 311 (668)
T ss_pred HcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEe
Confidence 124678999999999999999999999988766421 123345688899999999999999999999
Q ss_pred eeeecCCCEEEEccCCC-ceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceE
Q 000626 1040 NGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1040 ~G~Lr~GD~Ivv~g~~g-~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+|+|+.||.|.+.+... ..+.+|..|.... .....+ +.+|..+++.||.....|++|.
T Consensus 312 sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~----------~~~v~~--~~aGdI~~i~gl~~~~~Gdtl~ 370 (668)
T PRK12740 312 SGTLKKGDTLYNSGTGKKERVGRLYRMHGKQ----------REEVDE--AVAGDIVAVAKLKDAATGDTLC 370 (668)
T ss_pred eeEEcCCCEEEeCCCCCcEEecceeeecCCC----------ccccCc--cCCCCEEEEeccCccCCCCEEe
Confidence 99999999998776432 1233333332110 011112 2346666667887777777764
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=230.95 Aligned_cols=224 Identities=27% Similarity=0.302 Sum_probs=165.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEeccc----ccccchhhc--cc---ccc-cCCCCEE
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAE----NIRERTREL--KA---NAT-LKVPGLL 860 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~----~i~~~~~~i--~~---~~~-~~~~~i~ 860 (1384)
..+|.++||||||||||+.+|.+-. +...-.+|||+.+|....+.. .....+... .+ ... --.+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 3569999999999999999998643 233345899999986433321 110000000 01 111 1135699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHH
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
|+|+|||+-+...|..|+...|+|||||+|+.. .+|||.+||-.|.-.++ .+||+-||||++.. .++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A-- 158 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA-- 158 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH--
Confidence 999999999999999999999999999999975 68999999999998886 68899999999831 111
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~ 1018 (1384)
-+.+.+|..++.. .+..+.|+||+||..+.||+.|+..|..+++.+.. +...+..
T Consensus 159 ----------lE~y~qIk~FvkG------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r---d~~~~p~ 213 (415)
T COG5257 159 ----------LENYEQIKEFVKG------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPER---DLDKPPR 213 (415)
T ss_pred ----------HHHHHHHHHHhcc------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc---CCCCCce
Confidence 1233455544432 23456799999999999999999999888765433 3456778
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEcc
Q 000626 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1019 ~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
+.|..+|.+.- .|-|+.|-|.+|.|++||.|-|-+
T Consensus 214 m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 214 MYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 89999887743 578889999999999999997654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-23 Score=262.41 Aligned_cols=280 Identities=20% Similarity=0.232 Sum_probs=171.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-c---------------cccCceeEeeeeeEecccccccchhhccccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-E---------------GEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~---------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
...+|| |+|+||+|||||||+++|++..-. . ...+|||.+.....+.+ ..
T Consensus 16 ~~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~ 81 (720)
T TIGR00490 16 PKFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EY 81 (720)
T ss_pred cccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------ee
Confidence 346787 999999999999999999853211 0 00122232222111100 12
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCch
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1384)
.+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+.. ++
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~ 154 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI-------NE 154 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc-------ch
Confidence 33445799999999999999999999999999999999999999999999999889999999999999963 33
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCCceeEEeCCCcCCCC------------------
Q 000626 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------ 991 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~---~~~~~d~g~~v~iVpvSA~tGeG------------------ 991 (1384)
|...+. .++..|...+..+...+... +...+ |..... ...++.+|++.+++
T Consensus 155 ~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~---~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~ 226 (720)
T TIGR00490 155 LKLTPQ----ELQERFIKIITEVNKLIKAM-APEEFRDKWKVRVE---DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYK 226 (720)
T ss_pred hcCCHH----HHHHHHhhhhHHHHhhhhcc-CCHHHhhceEechh---hCCHHHHhhhhcccccchhHhhcCCCHHHHHH
Confidence 322222 23333433333333333221 00000 000000 00112223322211
Q ss_pred ----------------hhhHHHHHHHHHHHHHHH---h-------------------hhcccccceEEEEEEEEcCcceE
Q 000626 992 ----------------IPDLLLLLVQWTQKTMVE---K-------------------LTFRNELQCTVLEVKVIEGHGTT 1033 (1384)
Q Consensus 992 ----------------I~eLl~~L~~~~~~~l~e---~-------------------l~~~~~~~~~VlEvk~~~G~G~v 1033 (1384)
+..||+.|+.+++.+..- + .+...++.+.|+.+...++.|.+
T Consensus 227 ~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i 306 (720)
T TIGR00490 227 YCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV 306 (720)
T ss_pred HHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE
Confidence 234566666665544310 0 01134578899999989999999
Q ss_pred EEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000626 1034 IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1034 i~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+.++|++|+|+.||.|++++.+. ..+|+.|..+.... ...+. +.+|..+++.||.....|++|.
T Consensus 307 a~~RV~sGtL~~G~~l~~~~~~~--~~kv~~l~~~~g~~----------~~~v~~a~aGdIv~i~gl~~~~~GdtL~ 371 (720)
T TIGR00490 307 AVGRLYSGTIRPGMEVYIVDRKA--KARIQQVGVYMGPE----------RVEVDEIPAGNIVAVIGLKDAVAGETIC 371 (720)
T ss_pred EEEEEEeCEEcCCCEEEEcCCCC--eeEeeEEEEeccCC----------ccCccEECCCCEEEEECccccccCceee
Confidence 99999999999999998877652 23344433211100 01222 2346667777887777777663
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=236.33 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=196.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeeeeEecccccccchhhc---ccccc
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTREL---KANAT 853 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge--------------~gGITq~iga~~~~~~~i~~~~~~i---~~~~~ 853 (1384)
++-...|+|+|+||+||||||..|+++.+..|+ ..|-|..+|...+-++..-.....- .....
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 333345999999999999999999877665543 1445555554443332211000000 00111
Q ss_pred cC------CCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCc
Q 000626 854 LK------VPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 854 ~~------~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w 925 (1384)
|- ..-|+|||..||+.|......|+. ..|+.+|+|-++.|+-..|.+||.++..+.+|++||++|||+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP-- 287 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP-- 287 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc--
Confidence 11 123999999999999988777764 58999999999999999999999999999999999999999983
Q ss_pred ccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh-hcc--------cC--CCCceeEEeCCCcCCCChhh
Q 000626 926 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY-YKN--------KD--RGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 926 ~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~-~~~--------~d--~g~~v~iVpvSA~tGeGI~e 994 (1384)
+++.+.. +.-+...|...|...-.. .++ .+ -...||||.+|.+||+|++-
T Consensus 288 -----ANiLqEt--------------mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 288 -----ANILQET--------------MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred -----HHHHHHH--------------HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence 4443222 222333344444321100 000 11 23678999999999999987
Q ss_pred HHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccc
Q 000626 995 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKEL 1074 (1384)
Q Consensus 995 Ll~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~ 1074 (1384)
|..+|. ++. +...+..++|+.+.|.++|+++|.|+++.+.+.+|+|+.+|.+++++..... +.|-|++.+
T Consensus 349 LkmFLN-lls--~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~-------F~pI~iKSI 418 (641)
T KOG0463|consen 349 LKMFLN-LLS--LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGD-------FMPIPIKSI 418 (641)
T ss_pred HHHHHh-hcC--cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCC-------eeeeehhhh
Confidence 666654 332 2234566788999999999999999999999999999999998886653111 112222211
Q ss_pred eeceeeechhhhcccccceeeccccccccCCCceEEeCCC
Q 000626 1075 RVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1075 rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
-...|.+..|++++...+++..+.+.....+|++|.+.
T Consensus 419 --HRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 419 --HRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred --hhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 11234556677777777888888887788888888665
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=260.50 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=98.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--c--------------ccccCceeEeeeeeEecccccccchhhcccc
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~--------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~ 851 (1384)
.+.++|| |+|+||+|||||||+++|++.+- . ....+|||...+...+.|.............
T Consensus 15 ~~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 3567898 99999999999999999985431 1 1112455555444444432100000000000
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.......|+|||||||.+|...+.++++.||+||||||+..|++.||..+|+++...++|+|||+||||++
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 00113458999999999999999999999999999999999999999999999999999999999999997
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-23 Score=232.58 Aligned_cols=292 Identities=24% Similarity=0.297 Sum_probs=195.8
Q ss_pred CCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCc--------cccc----------ccCceeEeeeeeEecccccccch
Q 000626 784 TPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQEG----------EAGGITQQIGATYFPAENIRERT 845 (1384)
Q Consensus 784 ~a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~--------v~~g----------e~gGITq~iga~~~~~~~i~~~~ 845 (1384)
.+++....+|| |.||.|+|+||||.+.+|++-. |..| +.+|||.+..+..|.|.
T Consensus 29 ~~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------ 100 (753)
T KOG0464|consen 29 IINPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------ 100 (753)
T ss_pred CCCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc------
Confidence 44556678999 9999999999999999998521 2222 34677777777766654
Q ss_pred hhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCc
Q 000626 846 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 846 ~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w 925 (1384)
.+.|++||||||.+|+-.+.|++++.|++|.|+|++.|+++||+.+|+++..+++|.+++|||||..
T Consensus 101 ----------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~--- 167 (753)
T KOG0464|consen 101 ----------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL--- 167 (753)
T ss_pred ----------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh---
Confidence 4569999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCCchHHHHHHHhhHHH-------------------------------------------------------HHHHHH
Q 000626 926 KTCRNAPIVKAIKQQNTDV-------------------------------------------------------QNEFNM 950 (1384)
Q Consensus 926 ~~~~~a~~~~~l~~q~~~v-------------------------------------------------------~~ef~~ 950 (1384)
.++|..++......+ ...+..
T Consensus 168 ----~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae 243 (753)
T KOG0464|consen 168 ----AANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAE 243 (753)
T ss_pred ----hhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHH
Confidence 233333332221111 000000
Q ss_pred HHHHHHHHHHHcC--Cc---hhhhhcccC----------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQG--MN---TELYYKNKD----------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 951 ~i~~I~~~L~~~G--l~---~e~~~~~~d----------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
.-..++.++.... |. .+-|..|.+ -...+|+.+.||+++.||.-|++.+.-+++.+-..
T Consensus 244 ~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeer 323 (753)
T KOG0464|consen 244 AKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEER 323 (753)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhc
Confidence 0011111111100 00 000000100 12567999999999999999999887777643322
Q ss_pred ---hhh-cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000626 1010 ---KLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1010 ---~l~-~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
.|. |.+.+++..+.|-.++.+|+...-+||+|+|+..-.|. ..+|-....|..|+.|-.-. |.+
T Consensus 324 nyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~--nin~~~se~~~kl~~pfade----------~~~ 391 (753)
T KOG0464|consen 324 NYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIF--NINGMCSEGILKLFLPFADE----------HRE 391 (753)
T ss_pred chHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeee--ecccccccchHhhhccchhh----------hhh
Confidence 222 24566666777778899999999999999999886653 33444555666666664211 122
Q ss_pred hcc-cccceeeccccccccCCCceEEeC
Q 000626 1086 IKA-AQGIKITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1086 v~a-a~gv~i~~~gL~~~~aG~~l~v~~ 1112 (1384)
|.. ..|..-...||.....|++++...
T Consensus 392 i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 392 IEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhcccccEEEEecceeeccCCeEEecc
Confidence 222 133333445999988999877543
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-22 Score=206.48 Aligned_cols=165 Identities=55% Similarity=0.816 Sum_probs=127.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 7899999999999999999998888777777888888766665431 012359999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
.+++..+|++|+|||++++...++.+++.++...++|+|||+||+|+... ... .
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~~-------------------~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NPE-------------------R 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cHH-------------------H
Confidence 99999999999999999999999999999999999999999999998621 100 0
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+...+....... + ..++..++++++||++|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 011111111000 0 0123457999999999999999999997654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-21 Score=220.27 Aligned_cols=247 Identities=19% Similarity=0.267 Sum_probs=165.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeE---eeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCc
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ---QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq---~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe 868 (1384)
..+|+-|+|+|||||+..|+.-.-....+|.+.- ... +...|.. .++|++.++. .+.|....|+|+|||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~-a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKH-AKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcc-cccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3999999999999999999843222222222211 111 1122322 2344444433 345666779999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH---
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ--- 945 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~--- 945 (1384)
+|+.-+.|.+..+|.||+|||+..|+++||+..+..|+.+++|+|-+|||+|+.. .+..+.|...-..+.
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~-------rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG-------RDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc-------CChHHHHHHHHHHhCcce
Confidence 9999999999999999999999999999999999999999999999999999852 122222221111110
Q ss_pred --------------------------------------------------HHHHHH-HHHHHHH---HHHc--CCchhhh
Q 000626 946 --------------------------------------------------NEFNMR-LVQIVTQ---LKEQ--GMNTELY 969 (1384)
Q Consensus 946 --------------------------------------------------~ef~~~-i~~I~~~---L~~~--Gl~~e~~ 969 (1384)
..++.. ...+... +... -|..+.+
T Consensus 166 ~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~f 245 (528)
T COG4108 166 APITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAF 245 (528)
T ss_pred ecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHH
Confidence 000000 0111111 1111 1122222
Q ss_pred hcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh-----c-ccccceEEEEEEEE---cCcceEEEEEEEe
Q 000626 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVN 1040 (1384)
Q Consensus 970 ~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~-----~-~~~~~~~VlEvk~~---~G~G~vi~~iV~~ 1040 (1384)
. -|...|+|..||+++.||..+|+.++.|++.+.....+ + .+.|.+.|+.+..- .++-.++..+|.+
T Consensus 246 l----~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~S 321 (528)
T COG4108 246 L----AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCS 321 (528)
T ss_pred h----cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEecc
Confidence 1 26678999999999999999999999998876544221 2 23488888887632 4678899999999
Q ss_pred eeecCCCEEEEccC
Q 000626 1041 GVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1041 G~Lr~GD~Ivv~g~ 1054 (1384)
|.+-.|..+...-+
T Consensus 322 GkferGMkv~h~rt 335 (528)
T COG4108 322 GKFERGMKVTHVRT 335 (528)
T ss_pred ccccCCceeeeeec
Confidence 99999998865543
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-21 Score=247.98 Aligned_cols=126 Identities=26% Similarity=0.319 Sum_probs=97.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhccccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
...+|| |+|+||+|||||||+++|++..-. ....+|||.+.+...+.|..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 467887 999999999999999999863210 11224555554444443321100 000
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
......|+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0113459999999999999999999999999999999999999999999999999999999999999996
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=219.48 Aligned_cols=125 Identities=30% Similarity=0.315 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|||||||+++|++..-.....+.++ -|.+...+.. .+.+..++.. .+.|+...|+|||||||.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~--~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVH--GGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccccc--CCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH
Confidence 389999999999999999985321111111111 0111111111 1122222211 223445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-22 Score=197.02 Aligned_cols=92 Identities=38% Similarity=0.595 Sum_probs=82.2
Q ss_pred ccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHH
Q 000626 1137 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1213 (1384)
Q Consensus 1137 ~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~ 1213 (1384)
....+|||||||+||||||..+|. +++|+++|+++||||||++||.+|++. +|+||||||++++.+..+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~------~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASAS------NAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHH------C-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhh------CCEEEEeeCCCCHHHHHHHH
Confidence 345789999999999999999874 468999999999999999999999984 79999999999999999999
Q ss_pred HhCCeEEEcchHHHHHHHHHH
Q 000626 1214 ELGVKIFIADIIYHLFDQFTA 1234 (1384)
Q Consensus 1214 ~~gV~I~~~~IIY~L~d~~~~ 1234 (1384)
++||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
|
IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=215.74 Aligned_cols=188 Identities=23% Similarity=0.301 Sum_probs=121.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccc--c-------cCceeEe--eeeeEeccc-ccccchhhccc---ccccCCCCEEE
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEG--E-------AGGITQQ--IGATYFPAE-NIRERTRELKA---NATLKVPGLLV 861 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~g--e-------~gGITq~--iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~ 861 (1384)
|+|+||+|||||||+++|++..-... . ..+.+.. -+.+.+.+. ..+++..++.. .+.+....|+|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 89999999999999999985321100 0 0000000 001111111 01111111111 12234557999
Q ss_pred EeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 862 IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
||||||..|...+..++..+|++|||||++.|+..++..++.++...++| +|||+||||+.. |. ..
T Consensus 82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~----~~-------- 148 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD-YS----EE-------- 148 (208)
T ss_pred EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-CC----HH--------
Confidence 99999999998888899999999999999999999999999988888865 677999999862 11 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~ 1015 (1384)
.+......+...+...|+ ..+++|+|||++|.||.+....+.|+..+++++.|+...
T Consensus 149 ------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~ 205 (208)
T cd04166 149 ------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVP 205 (208)
T ss_pred ------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCC
Confidence 011111222233333333 235799999999999998776666666677777776543
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=214.31 Aligned_cols=184 Identities=23% Similarity=0.254 Sum_probs=122.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc--------------CceeEeeeeeEecccccc---cchhhcc-----ccccc
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIR---ERTRELK-----ANATL 854 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~--------------gGITq~iga~~~~~~~i~---~~~~~i~-----~~~~~ 854 (1384)
|+|+||+++|||||+.+|....+..+.. .|+|..+....+.+.... ....... ..+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 7899999999999999998655543221 344433222222111000 0000000 00122
Q ss_pred CCCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCch
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1384)
....|+|||||||..|...+.+++. .+|++|||||+.+|++++|.+++.++...++|+|||+||+|++. ...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~~ 155 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------ANI 155 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HHH
Confidence 3457999999999999999888886 79999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh-----------hcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY-----------YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~-----------~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
+...+..+...|...|+..-.+ ..+..++..+|+|++||+||+||+.|+.+|..
T Consensus 156 ---------------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 ---------------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ---------------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1122223333343333321111 12234567789999999999999999888754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=210.95 Aligned_cols=175 Identities=25% Similarity=0.266 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccc-cchhhcc--------cc--------cccC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR-ERTRELK--------AN--------ATLK 855 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~-~~~~~i~--------~~--------~~~~ 855 (1384)
+|+|+||+|||||||+.+|.+.. ......+|+|..++...+.+.... .++.... .. ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 59999999999999999998652 233445778888887766553110 0000000 00 0011
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC-CCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
...|+|||||||..|...+.+++..+|++|||||+.+ ++.++|.++|..+...++ |+|||+||+|+.. ...+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~------~~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK------EEQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC------HHHH
Confidence 2569999999999999999999999999999999998 478899999998887776 6899999999862 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. ..+..+...+..+. ...+++|++||++|+||.+|+.+|...+
T Consensus 156 ~---------------~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 156 L---------------ENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred H---------------HHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 11112222222111 1246899999999999999999987644
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=215.70 Aligned_cols=174 Identities=24% Similarity=0.356 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeEeeeeeEecccccccc
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRER 844 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-------------------------------e~gGITq~iga~~~~~~~i~~~ 844 (1384)
+|+|+||+|||||||+++|++..-... ..+|+|.++....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--------- 71 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--------- 71 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE---------
Confidence 389999999999999999974321100 0122333332222
Q ss_pred hhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC-------CCCHHHHHHHHHHHhcC-CceEEEE
Q 000626 845 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 916 (1384)
Q Consensus 845 ~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~-------Gv~~QT~E~l~llk~~~-vP~IVaI 916 (1384)
+.+....|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++...+ .|+|||+
T Consensus 72 -------~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 72 -------FETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -------EeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 23445679999999999999999999999999999999998 57789999999888877 5789999
Q ss_pred eeccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhH
Q 000626 917 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1384)
Q Consensus 917 NKiDl~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL 995 (1384)
||||++. .|. .. .|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~---~~---------------~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWS---EE---------------RYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred Ecccccccccc---HH---------------HHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999962 111 00 1111122233334444432 13579999999999999755
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 000626 996 LLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 996 l~~L~~~~~~~l~e~l~~ 1013 (1384)
-..+.|+....+++.|..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 444444444556665554
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-21 Score=205.57 Aligned_cols=180 Identities=27% Similarity=0.394 Sum_probs=123.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-------cccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t-------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
+|+|+||+|||||||+++|+.. .......+|+|.+++...+.+....... .. .........|+|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLR-EL-INPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccccccc-cc-ccccccCceEEEEECCCcH
Confidence 5999999999999999999862 1122335678887776555443110000 00 0001223569999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.|.....+++..+|++|+|||+.+|...++.+++.++...++|+|||+||+|+... ..+...+. .+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHHH-
Confidence 99888888889999999999999999999998888887788999999999998621 11111111 01111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111222111 246899999999999999999998776544
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=214.30 Aligned_cols=196 Identities=27% Similarity=0.309 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|+|||||+++|++........|.+. -|.++..+.. .+.+..++.. .+.|....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986532211111111 1111111111 1122222211 223445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+.++++.+|++|||||+.+|+..+|..+|+++...++|+|||+||||+. ++++...+...... |...
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i~~~----~~~~ 147 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEIKEK----LSSD 147 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHHHHH----HCCC
Confidence 999999999999999999999999999999999999999999999999986 44555554443322 2110
Q ss_pred -------------------HHHHHHHHHHcCC-chhhhhccc---------------CCCCceeEEeCCCcCCCChhhHH
Q 000626 952 -------------------LVQIVTQLKEQGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLL 996 (1384)
Q Consensus 952 -------------------i~~I~~~L~~~Gl-~~e~~~~~~---------------d~g~~v~iVpvSA~tGeGI~eLl 996 (1384)
...++..+.+..= -.+.|+... .-+..+|+++.||.++.|+..||
T Consensus 148 ~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll 227 (237)
T cd04168 148 IVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELL 227 (237)
T ss_pred eEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHH
Confidence 0111111111000 001122111 13678999999999999999999
Q ss_pred HHHHHHHH
Q 000626 997 LLLVQWTQ 1004 (1384)
Q Consensus 997 ~~L~~~~~ 1004 (1384)
+.|..+++
T Consensus 228 ~~~~~~~p 235 (237)
T cd04168 228 EGITKLFP 235 (237)
T ss_pred HHHHHhcC
Confidence 99988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=195.53 Aligned_cols=157 Identities=33% Similarity=0.463 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+|+|+|++++|||||+++|++.. +.....+++|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 69999999999999999998643 2222335667666554443320 13599999999999998
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..++..+|++|||+|+++++.+++.+.+..+...+. |+|+|+||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999999999998888877776 99999999998621 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+...++ ..++++++||++|.||.+|+..|.
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHh
Confidence 1222223322211 236899999999999999998875
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=210.86 Aligned_cols=120 Identities=33% Similarity=0.433 Sum_probs=90.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc--c--------------ccccCceeEeeeeeEecccccccchhhcccccccCCCCEE
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v--~--------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~ 860 (1384)
|+|+||+|||||||+++|+...- . ....+|||.......+.+...... ...-....|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 99999999999999999985321 1 011234444433322222110000 0000134589
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
|||||||.+|...+.++++.+|++|||||+..|+.+||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998899999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=223.48 Aligned_cols=185 Identities=24% Similarity=0.319 Sum_probs=139.6
Q ss_pred CCchhhhhccccCCCCCcccCCchhhccccCCCCCCCch--hhhhhccccccccCCCccCCCC------ccccccCCCCE
Q 000626 725 PEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQ--DAVTRKKEPAAKSKEPEVDATP------KQAEENLRSPI 796 (1384)
Q Consensus 725 ~~~~~~~e~k~~~~~~~e~~~~~~~~~~~~~~~~~~e~e--d~~~qkee~a~k~~~r~~sa~a------~~s~~~~R~pi 796 (1384)
.+.++.+++|.++|++++.++..+++..+.+++|++.++ .+.+..+.....+-.+...+.. ...+..+||
T Consensus 53 ~~~vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irn-- 130 (971)
T KOG0468|consen 53 QNAVVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRN-- 130 (971)
T ss_pred cceeeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEE--
Confidence 457899999999999999999999999999999998765 3444444333333222222221 234566777
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-----------------cCceeEeeeeeEecccccccchhhcccccccCCCCE
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGE-----------------AGGITQQIGATYFPAENIRERTRELKANATLKVPGL 859 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge-----------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i 859 (1384)
|+++||-.||||+|++.|......... .+|++++....++-... ..-+.+-+
T Consensus 131 V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-----------~~~KS~l~ 199 (971)
T KOG0468|consen 131 VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-----------SKGKSYLM 199 (971)
T ss_pred EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec-----------CcCceeee
Confidence 999999999999999999865543321 12333332222221111 11223569
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+|+|||||.+|+..+.++++.+|+||||||+.+|++.+|...|+++-..++|++||||||||+
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=217.26 Aligned_cols=278 Identities=22% Similarity=0.356 Sum_probs=187.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccccCceeEeeeeeEecccc-cccchhhccc---ccccCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQ---------EGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVP 857 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~---------~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~ 857 (1384)
+..+++|+||||+||||+-+.|+... |. .....+-..-+-++++.++. .+....++.. .+.....
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 44569999999999999988876321 10 00001111111222333221 1222222211 1222345
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----C--CHHHHHHHHHHHhcCC-ceEEEEeeccccc-CcccC
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFIVALNKVDRLY-GWKTC 928 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----v--~~QT~E~l~llk~~~v-P~IVaINKiDl~~-~w~~~ 928 (1384)
+++|+|+|||..|...+..|++++|+++|||.+..| + ..||++|..+++..++ .+||+|||||-+. +|..
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~- 236 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN- 236 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch-
Confidence 799999999999999999999999999999999754 3 3699999999999986 6889999999742 3533
Q ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHH-HHHHHHHHH
Q 000626 929 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL-LVQWTQKTM 1007 (1384)
Q Consensus 929 ~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~-L~~~~~~~l 1007 (1384)
.+|.+....+...|...|+|.- .++.++|+|++||.++.+.... ..||....+
T Consensus 237 -----------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~f 290 (501)
T KOG0459|consen 237 -----------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIF 290 (501)
T ss_pred -----------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccchhhcccccCCcccCCcc
Confidence 3455666677778887887642 5678999999999999988753 334443333
Q ss_pred HHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceecee
Q 000626 1008 VEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079 (1384)
Q Consensus 1008 ~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~ 1079 (1384)
+..|+ .+.|++|+|.+-+ ...||++.|.|.+|.++.|+.+++.+.... +.|.++
T Consensus 291 l~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~~----------------veV~~I 352 (501)
T KOG0459|consen 291 LEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKTN----------------VEVLGI 352 (501)
T ss_pred ceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCcc----------------eEEEEE
Confidence 33222 2457888888754 567799999999999999999998764421 223344
Q ss_pred eechhh---hcccccceeeccccccccCCCceEEeCCCc
Q 000626 1080 YLHHKQ---IKAAQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1080 ~~~~ke---v~aa~gv~i~~~gL~~~~aG~~l~v~~~e~ 1115 (1384)
|....+ +.++-.++|.+.|++.-.+-.+|+++.+..
T Consensus 353 ~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 353 YSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNN 391 (501)
T ss_pred ecccceeeeccCCcceEEEecccchhhccCceEEecCCC
Confidence 433222 334456899999988755555588887764
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=200.12 Aligned_cols=161 Identities=31% Similarity=0.392 Sum_probs=111.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
|| |+|+||++||||||+++|++.. +.. ....|+|.+...+.+.+... .....
T Consensus 1 rn--i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~ 67 (179)
T cd01890 1 RN--FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEY 67 (179)
T ss_pred Cc--EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcE
Confidence 55 9999999999999999998642 110 01123333222222111100 01123
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
.|+|||||||..|..++.+++..+|++|||+|++++...++..+|..+...++|+|||+||+|+.. ......
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-------~~~~~~- 139 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS-------ADPERV- 139 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc-------CCHHHH-
Confidence 488999999999999999999999999999999999999999988888778999999999999852 111000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+.. ..++ ....+|++||++|.||.+|+.+|...+
T Consensus 140 --------------~~~~~~---~~~~------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 --------------KQQIED---VLGL------------DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred --------------HHHHHH---HhCC------------CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 011111 1122 113589999999999999999987654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=213.19 Aligned_cols=129 Identities=27% Similarity=0.357 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTP 865 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTP 865 (1384)
+|| |+|+||+|||||||+++|++........|.+.. ..|.+...+.. .+.+..++.. .+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 576 999999999999999999864322222221110 01222222221 1222322222 234566679999999
Q ss_pred CCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 866 GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
||.+|...+.++++.+|++|||||++.|+..+|..+|+++...++|+|||+||||+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999989999999999999999999999999999999998999999999999985
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=209.40 Aligned_cols=282 Identities=20% Similarity=0.264 Sum_probs=185.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccc----------------------cc
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN----------------------AT 853 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~----------------------~~ 853 (1384)
.|+|+|..|+|||||+..|.......|..+ -.++.+.++++....++..+... ..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~Gr---ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGR---ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCe---eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 489999999999999999987766554421 12222222222111111111000 01
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccc--cceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCc
Q 000626 854 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
-...-++|||..||..|......|+.. .++|+|||+|+.|+...|++||.++.++++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112349999999999999888888765 7999999999999999999999999999999999999999973 11
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc-----------ccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK-----------NKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~-----------~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.+ ...+..+.+.|...|...-.+.- +.-.+..+|||.+|.++|+|+.-|..+|.
T Consensus 320 ~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 320 GL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred hH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 11 12233344445554543211100 01135678999999999999965554443
Q ss_pred HHHHH---HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceec
Q 000626 1001 QWTQK---TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1077 (1384)
Q Consensus 1001 ~~~~~---~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk 1077 (1384)
-+.+. .-...|. ..+..+.|.++|.++..|+++.|++..|.|+.|+.+++++.....+. .++|.
T Consensus 385 ~Lsp~~~~~e~~~L~-q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~------------~itV~ 451 (591)
T KOG1143|consen 385 CLSPAGTAEERIQLV-QLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFE------------KITVG 451 (591)
T ss_pred hcCCcCChHHHHHHh-cCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCcee------------EEEee
Confidence 22211 0111111 23467889999999999999999999999999999998876533322 22333
Q ss_pred eeeec---hhhhcccccceeeccccccccCCCceEEeCCC
Q 000626 1078 GTYLH---HKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1078 ~~~~~---~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
++.-. ..-|.+++...+++...+.+...++|+++.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 32211 12345666677777666667778888887655
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-20 Score=199.57 Aligned_cols=157 Identities=31% Similarity=0.360 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Ccccccc--------------cCceeEeeeeeEecccccccchhhcccccccC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~--t~v~~ge--------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+|+ |+|+||+++|||||+++|++ ..+.... ..|+|.......+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 566 99999999999999999986 2222211 1222222211111 123
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||..|..++..+++.+|++|||||+.+++.+++..++..+...++|+|||+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34699999999999999999999999999999999999989998888888888999999999999862 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl 996 (1384)
. +..+...+...+.... ...+++|++||++|.|+.++-
T Consensus 137 ~---------------~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 137 V---------------VDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred H---------------HHHHHHHHHHhCCccc--------cCccCEEEeehhccccccccc
Confidence 1 1222223333332211 124689999999999997663
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-20 Score=179.47 Aligned_cols=108 Identities=65% Similarity=1.017 Sum_probs=103.2
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
++|+|+|++..+|+|+|++++|++|+|+.||+|++|+++||++|+||+||+|.|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEeCCCccHHHHHHHH
Q 000626 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEA 1124 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~v~~~e~~~~~~~~~~ 1124 (1384)
+||+.++||++|+++.++++++.+.+++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~ 108 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEV 108 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHH
Confidence 9999999999999999998887776654
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=190.89 Aligned_cols=169 Identities=35% Similarity=0.445 Sum_probs=118.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc----------------CceeEeeeeeEecccccccchhhcccccccCCCCEE
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~----------------gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~ 860 (1384)
|+|+|++|+|||||+++|++........ +++|.+.+...+ .+....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------EWPDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----------------eeCCEEEE
Confidence 8999999999999999998766543321 222222221111 12234699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
||||||+..|...+..++..+|++|+|||+.++...+..+++.++...++|++||+||+|+.. ...+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~~------ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDLE------ 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcHH------
Confidence 999999999999999999999999999999999999999999999888999999999999962 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...+...++... +-........+++|++||++|.||.+++.+|..++
T Consensus 134 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 134 ---------EVLREIKELLGLIGFIST-KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---------HHHHHHHHHHccccccch-hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 111222223332221100 00000012357999999999999999999988764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=196.09 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=112.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------------------cCceeEeeeeeEecccccccchhhcccccc
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------------AGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-------------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
|+ |+|+||+|||||||+++|+........ ..|+|.......+.+... .
T Consensus 1 rn--v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~ 67 (213)
T cd04167 1 RN--VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------K 67 (213)
T ss_pred Cc--EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------C
Confidence 55 999999999999999999865433221 122222222221111100 0
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000626 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.....|+|||||||.+|...+.+++..+|++|+|||+.++...++..+++.+...++|+|||+||+|++.-- ...+.
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~---~~l~~ 144 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILE---LKLPP 144 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCccc---ccCCH
Confidence 112358999999999999999999999999999999999999999888888888889999999999986100 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
. .....|...+..+...+...++....++- .-...++..||+.|+++.
T Consensus 145 ~--------~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 145 N--------DAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 0 11223334444454555555543221110 012358889999999984
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=191.81 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=138.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-c
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-S 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-~ 869 (1384)
.+|+..|||+|.+++|||||||+|++..+.. +.+.. ++.+.+..++ ......+|.||||||.. .
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------vS~k~------QTTR~~I~GI---~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI------VSPKP------QTTRNRIRGI---VTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe------ecCCc------chhhhheeEE---EEcCCceEEEEeCCCCCCc
Confidence 4678899999999999999999999887652 21111 1111111111 11223579999999932 1
Q ss_pred ---h----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 870 ---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 870 ---F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
+ ......++..+|+++||||+++++.+.....+..++..++|+|+++||+|+... ..
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~~---------- 131 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------KT---------- 131 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------HH----------
Confidence 2 233446678899999999999999999999999999988999999999998731 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH-----------------
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK----------------- 1005 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~----------------- 1005 (1384)
.+..+...+... ..+..+||+||++|.|++.|+..|..+++.
T Consensus 132 --------~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 132 --------VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred --------HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 011222222221 134589999999999999999999887642
Q ss_pred ----HHHHhhh----cccccce--EEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCcee
Q 000626 1006 ----TMVEKLT----FRNELQC--TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIV 1059 (1384)
Q Consensus 1006 ----~l~e~l~----~~~~~~~--~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~ 1059 (1384)
.+++++. ..-|... .|.+....+.....+.+.|+ +=|.++.-+|.|.+|..+
T Consensus 191 ~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~i 252 (298)
T COG1159 191 LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMI 252 (298)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHH
Confidence 1222221 1222222 22222222344455666555 556777777777776543
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=200.21 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|+|||||+++|++........+.++ .|.+...+.. .+.+..++.. ...|....|+|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999986432212222121 1222222211 1112222211 123445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.+++..+|++|+|||++.|...+|..+|+++...++|+|||+||||+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=200.32 Aligned_cols=215 Identities=25% Similarity=0.283 Sum_probs=136.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~- 869 (1384)
.+...|+|+|++|+|||||+++|++..+.. ....+.|.+.....+. +....|+||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~----------------~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT----------------LKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE----------------eCCeEEEEEECCCcCCC
Confidence 355679999999999999999999876542 1122233222111111 1224589999999743
Q ss_pred hhH-------HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 870 FTN-------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 870 F~~-------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
|.. .....+..||++|||||+..++...+..++..++..+.|+|||+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 221 122347789999999999998888777778888888889999999999852 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH------------------
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1004 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~------------------ 1004 (1384)
+..+...+... .....+|||||++|.||.+|+.+|..+++
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 01111222211 12357999999999999999999988753
Q ss_pred ---HHHHHhh----hcccccceEEE-EEEEEcC-cceEEEEEEEeeeecCCCEEEEccCCCceeEEee
Q 000626 1005 ---KTMVEKL----TFRNELQCTVL-EVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1384)
Q Consensus 1005 ---~~l~e~l----~~~~~~~~~Vl-Evk~~~G-~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir 1063 (1384)
+.+.+++ ...-|....|. +.+.... ....|.+.|+ +=+.++.-+|+|.+|..+.+|.
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIG 300 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHH
Confidence 1222222 22233333332 2222222 2234666666 6678888888898876655443
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=193.03 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=135.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.+|+.+|+|+|++|+|||||+++|++..+... .....|.+.....+. .....|+||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 35788999999999999999999998765321 112222211100000 0113599999999654
Q ss_pred h--------hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 F--------~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
. ...+..++..+|++|||||+++++......++..+...++|+|||+||+|++.. ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~--------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KE--------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HH---------
Confidence 3 234445678899999999999988888888888888778999999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH----------------
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~---------------- 1005 (1384)
.+..+...+... ....++|++||++|.|+.+|+.+|..+++.
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011111222211 124589999999999999999998876521
Q ss_pred -----HHHH----hhhcccccceEEEEEEEEcCcce-EEEEEEEeeeecCCCEEEEccCCCceeEEee
Q 000626 1006 -----TMVE----KLTFRNELQCTVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1384)
Q Consensus 1006 -----~l~e----~l~~~~~~~~~VlEvk~~~G~G~-vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir 1063 (1384)
.+.+ .+...-|....|.-..+... |. .+.+.|+ +=+.++.-+|+|.+|..+.+|+
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~ 253 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIG 253 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHH
Confidence 1122 12222333322222222222 33 3555555 4567777778888876554443
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=191.60 Aligned_cols=210 Identities=19% Similarity=0.261 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F---- 870 (1384)
.|+|+|++|+|||||+++|++..+.. ...+++|.+.-...+. .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 58999999999999999999876542 2334444432111111 11235899999996432
Q ss_pred ----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 871 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...+..++..+|++|||||++++...+ ...+..+...+.|+|+|+||+|++. ...+ .
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~~----~-------- 126 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDKL----L-------- 126 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHHH----H--------
Confidence 122345678899999999999876654 4556677778899999999999862 0000 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH---------------------
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK--------------------- 1005 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~--------------------- 1005 (1384)
.....+... ....++||+||++|.||++|+.+|..+++.
T Consensus 127 -------~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 127 -------PLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred -------HHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 001111110 112379999999999999999999876531
Q ss_pred HHHHhh----hcccccceE-EEEEEEEcC-cceEEEEEEEeeeecCCCEEEEccCCCceeEEe
Q 000626 1006 TMVEKL----TFRNELQCT-VLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062 (1384)
Q Consensus 1006 ~l~e~l----~~~~~~~~~-VlEvk~~~G-~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~I 1062 (1384)
.+.+++ ...-|.... .++.+.... ....+.+.|+ +=|.++.-+|+|.+|..+.+|
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i 247 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAI 247 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHH
Confidence 222222 222233222 223233222 2333555555 456777778888887654433
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-18 Score=173.65 Aligned_cols=147 Identities=25% Similarity=0.307 Sum_probs=105.7
Q ss_pred EEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH----
Q 000626 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 872 (1384)
Q Consensus 798 ~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~---- 872 (1384)
+|||++|+|||||+++|.+.+.. .....++|.......+.+ ....|.|||||||..|..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----------------GGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----------------CCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999976532 122334444332222211 223589999999988654
Q ss_pred ----HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 873 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.....+..+|++|+|+|+.+++...+..++.+++..++|+|||+||+|+.. ....
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-------~~~~-------------- 123 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK-------EEDE-------------- 123 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC-------hHHH--------------
Confidence 445667889999999999998888888888888888999999999999862 1100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+ ..+++++||++|.||.+|+.+|+.+
T Consensus 124 -------~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 124 -------AAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -------HHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 11121111 1268999999999999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=173.17 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|+...+.......+...+....+.... ....|+||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 489999999999999999998766544333322222211111110 112488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.++..+|++|||+|++++...+.... +..++.. ++|+|||+||+|+.. . . .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~-~-----------~------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------S-V-----------T------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------h-H-----------H-------
Confidence 99999999999999988665554443 3444443 689999999999841 0 0 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.... .+... ..++++++||++|.||.+++..|+..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999987654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=198.14 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
..+.|+|+|++++|||||+++|++... ......|+|.+.....+.+. ...|+||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 446799999999999999999997653 23445666655433333221 2359999999975443
Q ss_pred ----------HHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 872 ----------NLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ----------~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
.++ .+++..||++|||||+++|+..++...+.++...++|+|||+||+|++.. .. .
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~---~---- 301 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EK---T---- 301 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HH---H----
Confidence 222 34678899999999999999999999999999999999999999998610 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
+..+...+... +. +-..+++|+|||++|.||.+|+.+|..++.
T Consensus 302 -----------~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 302 -----------REEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111112111 00 013479999999999999999999887664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-18 Score=176.54 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH---
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~--- 872 (1384)
.|+++|.+++|||||+++|++.....+..+|+|.......+.+.. ..+.||||||..++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 599999999999999999999998888899999876655554332 3499999999655421
Q ss_pred ---HHHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 ---LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ---~r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
....+ ...+|++|+|||+++ ..+....+.++..+++|+|+|+||||+.... ...+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 12223 357999999999987 3566677788888999999999999985210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
....+...| .+|+||+||++|.|+.+|+..|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 001111111 2699999999999999998764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=175.54 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-c-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-Q-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe- 868 (1384)
.+.+.|+|||++|+|||||+++|++..+ . .....|.|+++..+.+ + ..|.||||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-----------------DGFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-----------------CcEEEEeCCCCcc
Confidence 4667899999999999999999998752 1 2234445555432211 1 248999999952
Q ss_pred ---------chhHHHHhcc---cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHH
Q 000626 869 ---------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 869 ---------~F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|..++..++ ..+|++|+|||+++++..++..+++++...++|+|||+||+|+... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~--- 147 (179)
T TIGR03598 77 AKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SEL--- 147 (179)
T ss_pred ccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHH---
Confidence 3444443333 3568999999999999999999999998899999999999998621 111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
...+..+...|...+ ..+++|+|||++|+||.
T Consensus 148 ------------~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 148 ------------NKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred ------------HHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence 111223333333222 23589999999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=171.40 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=96.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh---
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~--- 871 (1384)
|+|+|+|++++|||||+++|++..+.....++.|..+....+.+ ....|+||||||+..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 67999999999999999999987654333333333322222211 12359999999984321
Q ss_pred ------HHHHhcccccceeEEEeeccCCCC---HHHHHHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 872 ------NLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ------~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
..+......+|++|||+|+++... ......+..++.. ++|+|||+||+|+... ..+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~~------- 131 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------EDL------- 131 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hhH-------
Confidence 011111234689999999987432 2223455556554 7999999999998621 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ...+... ..+++++|||++|.||.+|+.+|...
T Consensus 132 ------------~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 132 ------------SE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 00 1111111 23589999999999999999988754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=173.73 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.|+|||||+.+|++..+.......++.++....+.+... ...++|||||||..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK--------------RVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHH
Confidence 45999999999999999999877655433333322222222222110 0248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ----REVL------------------ 127 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cccC------------------
Confidence 9999999999999999886544443333 3232 246899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+....... +...++++||++|.||.+++.+|...
T Consensus 128 -~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 -FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 00111111111 12478999999999999999988753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=195.91 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=115.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.+.|+|+|++++|||||+++|++.. +..+..+|+|.+.....+.+. ...|+||||||+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD----------------GQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC----------------CeeEEEEECCCCCCCcc
Confidence 4679999999999999999999765 334555677765443333222 23589999999643
Q ss_pred -------hhHHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 870 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 -------F~~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
|..++ .+++..||++|||||++.|+..|+...+.++...++|+|||+||+|+.. .....
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-------~~~~~------ 303 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKTME------ 303 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-------HHHHH------
Confidence 23222 3578899999999999999999999999999999999999999999862 10000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+ ...+...|.. -..+|++++||++|.||.+|+..+..++.
T Consensus 304 -----~~---~~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 304 -----EF---KKELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred -----HH---HHHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 01 1111111111 13479999999999999999998876653
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=174.10 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=97.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc-cc-----ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~-~g-----e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
|+|||++|+|||||+++|.+.... .+ ..+++...++. +. +....+.|||||||..|
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~----------------~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IE----------------VGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EE----------------ECCEEEEEEECCCChhh
Confidence 899999999999999999753221 00 01111111111 11 12235899999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
..++...+..+|++|||||+.+.-. ......+..+. ..++|+||++||+|+...+ ..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~------------ 125 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV------------ 125 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH------------
Confidence 9999999999999999999976421 12222333222 2479999999999985311 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+.... . . .....++++++||++|.||.+++.+|.
T Consensus 126 -------~~~~~~~~~~~-~-~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -------EEIKEVFQDKA-E-E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -------HHHHHHhcccc-c-c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 01111111100 0 0 001346999999999999999999885
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-17 Score=169.56 Aligned_cols=160 Identities=19% Similarity=0.278 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
++.|+|+|++|+|||||+++|++..+. .+..+++|.......+.+ ....++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY----------------DGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE----------------CCeeEEEEECCCCccccc
Confidence 467999999999999999999876532 222333333322222211 2235899999997543
Q ss_pred --------hHH-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 871 --------TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 871 --------~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
..+ ....+..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 211 2345678999999999999988888888888888899999999999986310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+... +.. ...+++|++||++|.||..++..+..+
T Consensus 132 ---------~~~~~~~~~~~~-~~~---------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LPF---------LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-ccc---------ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111112111 100 123689999999999999999887643
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=169.70 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++..+....+.... ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998776555444444443333332221 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-H---HHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|++++...+....| . .+...++|+|||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986555544444 2 233357899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+... + ++++++||++|.||.+++.+|+.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111112111 1 58999999999999999998864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=173.22 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.+.|+|+|++++|||||+++|.+..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 44679999999999999999998764321 122222111100 01123489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCH-HHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|||+|+++.-.. .....+..+ ...++|+|||+||+|+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA------LS--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC------CC---------------
Confidence 999999999999999999875221 112222222 2257899999999998621 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+....+. ...+++|+|||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111112111110 2357999999999999999998875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=200.01 Aligned_cols=117 Identities=34% Similarity=0.497 Sum_probs=95.2
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhcccc
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~ 851 (1384)
....+|| |||+.|||||||||.+.|+..+.. +..++|||...++...-
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-------------- 68 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-------------- 68 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc--------------
Confidence 3467888 999999999999999999855421 11224444443333211
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.|+|||+|||.+|+..+..+++.||+++++||+..|+.+||...++++-..+...|+||||||++
T Consensus 69 --~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 69 --HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred --cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 133569999999999999999999999999999999999999999999999999999999999999975
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=169.18 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....++++.++....+.+.... ..|+||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT--------------VRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE--------------EEEEEEECCCcHHHHHHHH
Confidence 48999999999999999999888876666666666544443332110 1389999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH-Hhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-KMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+....| ..+ ... ++|+|||+||+|+... +....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 999999999999999886544444433 322 233 4899999999998411 10000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...... ..++++++||.+|.||.+|+.+|...
T Consensus 126 -~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 -EEGEKKAKE---------------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -HHHHHHHHH---------------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 001111111 12589999999999999999998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=169.02 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=101.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.....+.++..+ ...+.+. .....+.|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID--------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC--------------CEEEEEEEEECCCCcchhHHH
Confidence 3599999999999999999987665433222222111 1111111 011248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...+..+|++|||+|+++....+.... +..+ ...++|+|||+||+|+...+ ...
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~----~~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR----KVS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc----eec-----------------
Confidence 999999999999999987433222222 1222 22478999999999986311 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......+... .++++++||++|.||.+++..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 24889999999999999999987654
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-17 Score=169.94 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....|+|||||||..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 489999999999999999998876544433333222211121111 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH--HHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+++.||++|+|+|+++....+....|. ++.. .++|+|||+||+|+... .....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~------------- 129 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVST------------- 129 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccCH-------------
Confidence 9999999999999998754333333331 1221 26899999999999620 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+... +.++++++||++|.||..++.+|...+.
T Consensus 130 -----~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 130 -----KKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred -----HHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111112221 2368999999999999999999876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=169.76 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.|+|||||+++|....+..+...+++.+.....+.+... ...+.|||||||..|..+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE--------------KIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHH
Confidence 356999999999999999999876665444333333322222222110 013789999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+...+..+|++|+|+|+.++...+....| ..+...++|+|+|+||+|+... ..+..
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~~-------------- 132 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVSQ-------------- 132 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCH--------------
Confidence 99999999999999999876444333333 3333346999999999998521 11100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+...+... ..++++++||++|.|+.+++..|...
T Consensus 133 ----~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 133 ----QRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----HHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 011112111 12589999999999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-17 Score=168.03 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|++..+.....++++.++....+.+.. ......|+||||||+..|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ------------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC------------CCCEEEEEEeeCCchHHHHHhHH
Confidence 489999999999999999998766554444444433222111110 00012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHH-HH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~l-lk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
..++.+|++|||+|+++.-..+....|.. +. ..++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 99999999999999987544444433332 22 237999999999998621 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+....... .++++++||++|.||.+|+.+|..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEAEALAKRL---------------QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 0111111111 148999999999999999988864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=165.48 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++.++....+.+... ...|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK--------------RVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHHH
Confidence 4899999999999999999988776555555555444333332210 02488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..||++|||+|+++....+....| ..+.. .++|+|||+||+|+...+. .+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~------------------ 125 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSR------------------ 125 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCH------------------
Confidence 999999999999999885444444333 22222 4689999999999862110 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+....... .++++++||.+|.||.+++.+|...+
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 126 -EEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -HHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24799999999999999999988654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=167.97 Aligned_cols=147 Identities=25% Similarity=0.293 Sum_probs=102.2
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH------
Q 000626 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN------ 872 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~------ 872 (1384)
|||++|+|||||+++|++..+..+..+|+|.+.....+.+. ...+.||||||+..|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 58999999999999999876555556666665543333322 13589999999988764
Q ss_pred HHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 873 LRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 873 ~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
++...+. .+|++|||+|+.+. .+....+..+...++|+|||+||+|+... ..+..
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~--------------- 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIKI--------------- 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccchh---------------
Confidence 3444454 89999999999873 33344556667788999999999998631 10000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+ ..+... -.++++++||++|.|+..|+.+|..+
T Consensus 122 ---~~-~~~~~~--------------~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 ---DL-DKLSEL--------------LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---hH-HHHHHh--------------hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 01489999999999999999888754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=167.38 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....+.++.+++...+..... ...|+||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK--------------EVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe--------------EEEEEEEECCccHHHHHHHH
Confidence 4899999999999999999988766555455544443333322210 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh--------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..+..+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.... ...
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999875433333333 22211 358999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.......+... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00011111111 1579999999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=172.21 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
+..|+|||+.++|||||+++|++..+... .+.++..+....+.+. ......|.||||||+..|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 35699999999999999999987655422 2211111111111110 011234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHH-----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...+..||++|||||+++.-...... ++......++|+|||+||+|+...+ +.
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~~--------------- 127 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------SV--------------- 127 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------CH---------------
Confidence 998999999999999998742222111 1222233579999999999985210 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+....+. ....+++++|||++|.||.+|+.+|...+.
T Consensus 128 ----~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 128 ----SEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ----HHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 0111111101110 012367999999999999999999886664
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=172.33 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||.+++|||||+.+|++..+.....+++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 489999999999999999998776554444444333222222210 0012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH-------hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
..+..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~--------------- 129 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AKD--------------- 129 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----ccC---------------
Confidence 999999999999999874333333222 1121 2468999999999985210 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+...+...+ .++++++||++|.||.+++.+|+..+..
T Consensus 130 ----~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 130 ----GEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ----HHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 011222222222 2479999999999999999999876643
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=165.59 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+|+|||||+++|++..+.....+.+.... ...+.... ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHHH
Confidence 589999999999999999998766443333222111 11111110 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|+|+|+++....+.... +..+. ..++|+|||+||+|+... ...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~------------------ 124 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS------------------ 124 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec------------------
Confidence 99999999999999987433333222 22222 247899999999998620 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+....... .++++++||++|.||.+++.+|+..
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 -SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred -HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00111111111 2479999999999999999988753
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=193.90 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=114.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH---- 867 (1384)
+.+.|+|+|++++|||||+++|++..+ ......|+|.+.....+.+. ...+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~----------------~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG----------------GKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC----------------CEEEEEEECCCccccc
Confidence 456799999999999999999998754 23445566655432222221 234789999994
Q ss_pred ------cchhHHHH-hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 868 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 868 ------e~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
+.|..++. ..+..+|++|||+|+++++..+....+.++...++|+|||+||+|++.. .....+
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~~--- 343 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYYL--- 343 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHHH---
Confidence 44555543 4578899999999999999999999998888889999999999999621 100000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+...+.. -..+++++|||++|.||.+|+..|..++.
T Consensus 344 -----------~~~i~~~l~~--------------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 344 -----------EREIDRELAQ--------------VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -----------HHHHHHhccc--------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111111111 12368999999999999999999987664
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=167.27 Aligned_cols=151 Identities=26% Similarity=0.254 Sum_probs=98.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+.+|+...+... .+++...+ ..+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVT----------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEE----------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976554321 11111111 1111 11234899999999999999999
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEP-QTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||||+++.... .+...|. ++.. .++|+|||+||+|+...+ ..
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~~------------------ 118 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------SE------------------ 118 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------CH------------------
Confidence 99999999999999874322 1223333 3332 368999999999986211 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+ ++.. .....+++++|||++|.||.+++.+|+.
T Consensus 119 -~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 -AEISEKL---GLSE-------LKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -HHHHHHh---Cccc-------cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0111111 1110 0012358999999999999999998863
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=174.09 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|+...+.. ..+ .+|..+.... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999877653 122 2222221110 1112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchH-HHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPI-VKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~-~~~l~~q~~~v~~ef~~ 950 (1384)
.+++.+|++|||+|+++......+. .|..+.. .++|+|||+||+|+...|.......- ...+.... ... .
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~---~r~--v 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPED---QRQ--V 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccc---ccc--C
Confidence 9999999999999998854333333 2332322 35899999999999753321100000 00000000 000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEE
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1021 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~V 1021 (1384)
.......+....+- ...+|.+......++|++|||+||.||.++|..|+..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~~-~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRINK-YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhCc-cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 00111111111110 01122222222347899999999999999999998877665555433333334443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=173.99 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
-|+|||..++|||||+.+|.+..+......+++..+....+.+... ...|+||||||++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 4899999999999999999988776555455444433222322210 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+....|. .+.. .++|+|||.||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 9999999999999999865555544432 3332 358999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......+... + ..+.++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0001111111 0 124799999999999999999987654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=166.76 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+.+|.+...... .++..+|.....+. +....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 11222221111010 11234899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHH-H-----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++..+|++|||+|++++.... ....+..+ . ..++|+|||+||+|+... ...
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~~---------------- 122 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LTA---------------- 122 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CCH----------------
Confidence 999999999999998864322 12222222 1 247999999999998521 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ ++.. . ....+++++|||++|.||.+++.+|.
T Consensus 123 ---~~~~~~l---~~~~--~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 123 ---VKITQLL---GLEN--I-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ---HHHHHHh---CCcc--c-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 0111111 1100 0 01235799999999999999999875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=170.77 Aligned_cols=162 Identities=16% Similarity=0.080 Sum_probs=106.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|.+..+.....+.+...+.. .+..+ .....+.||||||+..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~--------------~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVID--------------EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEEC--------------CEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876643322222211110 00011 01124889999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+..++..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ .+..
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------~i~~------------- 130 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER------QVST------------- 130 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------ccCH-------------
Confidence 99999999999999999875432223222 2222 2378999999999985211 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~ 1008 (1384)
.......... .+++++|||++|.||.+++.+|+..+...+.
T Consensus 131 ----~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 131 ----GEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ----HHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000111111 1489999999999999999999877655433
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=165.61 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++|+|||||+++|.+..+.....++++..+ ...+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDG--------------EVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECC--------------EEEEEEEEECCCcccchHHHH
Confidence 489999999999999999997766543333222111 11111100 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..+|++|||+|+++.-..+....| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999874332222222 112 22368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++++||++|.||.+|+.+|+..+
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 125 -TEEGKELARQW---------------GCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred -HHHHHHHHHHc---------------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00011111111 15899999999999999999987654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=167.61 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.......++..+....+..... ...++||||||+..|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987765444333333333222222110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.+.+..+|++|||+|+++....+....| ..++. .++|+|||+||+|+... +..+.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~----------------- 129 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVSY----------------- 129 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCCH-----------------
Confidence 9999999999999999874443333333 23333 36899999999998621 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.||.+++.+|...+
T Consensus 130 --~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 130 --EEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred --HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24789999999999999998887554
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-17 Score=188.58 Aligned_cols=152 Identities=24% Similarity=0.380 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
|+|+|+|.+++|||||+|+|++.... ....+|+|.+--.... .|....|.+|||+|...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~----------------~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA----------------EWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcccee----------------EEcCceEEEEECCCCCcCCch
Confidence 89999999999999999999988754 3445666665322222 23345699999999764
Q ss_pred -hhH----HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 870 -FTN----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -F~~----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|.. ....++..||++|||||+..|++++..+...+|+..+.|+|+|+||+|-..
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--------------------- 126 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--------------------- 126 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch---------------------
Confidence 322 234667889999999999999999999999999988899999999999641
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......|..+||. .++||||.+|.||.+|++.++.+++
T Consensus 127 -------~e~~~~efyslG~g--------------~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 -------AEELAYEFYSLGFG--------------EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -------hhhhHHHHHhcCCC--------------CceEeehhhccCHHHHHHHHHhhcC
Confidence 11233456666652 6899999999999999999988764
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=167.07 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|.+++|||||+++|.+..+.....++++.+.....+.+... ...|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK--------------KIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE--------------EEEEEEEeCCchHHHHHHH
Confidence 46999999999999999999987766544343333222212211110 0248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..+|++|||+|++++...+....| ..+.. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK----RVVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 9999999999999999875443333332 22222 46899999999999621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...+... .+++++|||++|.||.+++.+|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 24899999999999999999987644
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=166.69 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCC-CCEEEEeCCCCcc---
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES--- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~-~~i~~IDTPGHe~--- 869 (1384)
.|+|||++|||||||+++|.+.....+...+.|. ++|... + .. ..|+||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~--~----------------~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR--V----------------DDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE--c----------------CCCCeEEEEecCcccCccc
Confidence 3899999999999999999876543232223332 222221 1 11 2599999999742
Q ss_pred ----hhHHHHhcccccceeEEEeeccCC-CCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHH
Q 000626 870 ----FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+.....+.+..||++|||+|++++ -..+....| ..+.. .++|+|||+||+|+... ..+.
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~---- 133 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EELF---- 133 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhhH----
Confidence 233334456679999999999986 333333333 33332 36899999999998621 1110
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+.... ..++++++||++|.||.+|+.+|..+
T Consensus 134 ---------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 134 ---------------ELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ---------------HHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 0111111110 13579999999999999999998754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=166.13 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|.+..+......+++.++....+.+... ...+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHHH
Confidence 4899999999999999999987765544444443322222221110 12488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-...... ++..+.. .++|+|||+||+|+... +....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~------------------ 127 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK----RVVDY------------------ 127 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc----cCCCH------------------
Confidence 9999999999999998743222222 2222322 35899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...... ..++++++||++|.||.+++..|+..+
T Consensus 128 -~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 128 -SEAQEFADE---------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -HHHHHHHHH---------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 001111111 125899999999999999999987644
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=165.98 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|.+..+.....+.+..++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999997766544333332222221111111 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~----~~~~------------------- 126 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ----RDVT------------------- 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCcC-------------------
Confidence 999999999999999885444444333 2222 245899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+... .++++++||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 YEEAKQFADEN---------------GLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 2589999999999999999888654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=171.79 Aligned_cols=158 Identities=25% Similarity=0.351 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----- 867 (1384)
+.+.|+|+|++++|||||+++|++..+..+..+|+|..... +.+ ..++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW------------------GDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee------------------cceEEEeCCccccccc
Confidence 45779999999999999999999877655555565544221 111 14899999995
Q ss_pred ------cchhHHHH----hcccccceeEEEeeccCC-----------CCHHHHHHHHHHHhcCCceEEEEeecccccCcc
Q 000626 868 ------ESFTNLRS----RGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1384)
Q Consensus 868 ------e~F~~~r~----rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~ 926 (1384)
+.|..++. +++..++++|+|+|++.. ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 33444332 245567899999998642 2345677788888889999999999998621
Q ss_pred cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 927 ~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. .. ....+... .++.. .|. .+ ..++|+|||++| ||.+|+.+|...+
T Consensus 146 -----~-~~---------------~~~~~~~~---~~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 146 -----R-DE---------------VLDEIAER---LGLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----H-HH---------------HHHHHHHH---hcCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0 00 01111111 12210 010 01 247999999999 9999999987654
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=194.86 Aligned_cols=152 Identities=26% Similarity=0.343 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.|+|+|||++++|||||+++|++..+. .....|+|.+.-...+.+ ....|+||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----------------NGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----------------CCcEEEEEeCCCcCCcch
Confidence 377999999999999999999986542 345567776543333222 223489999999763
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|...+..++..||++|||||+++++......++.+++..++|+|+|+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-----~~------------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-----EA------------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-----ch-------------
Confidence 4455666788999999999999998888888888888889999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. ...+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~-----------~---~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGL-----------G---EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCC-----------C---CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 011222232 1 246999999999999999987654
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=167.04 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|+...+.....+.+...+....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR--------------GKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCChhhccccH
Confidence 489999999999999999987665443333333333222222110 112489999999999999988
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
..+..+|++|||+|++++...+....| ..+... ++|+|||+||+|+.. +... .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-----~~~~-~------------------ 123 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-----RKVK-A------------------ 123 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-----ccCC-H------------------
Confidence 899999999999999886554444333 333222 699999999999851 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
... .+... ..+++++|||++|.||.+++.+|+..+
T Consensus 124 -~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 124 -KQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred -HHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 000 11111 235899999999999999999997544
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-17 Score=149.78 Aligned_cols=80 Identities=48% Similarity=0.747 Sum_probs=69.6
Q ss_pred ecceeeeecccccccCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000626 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1252 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
+.||.|+|+|+|+||+++ +|+| +|+.|+|++|+|| +| ..+|+|.||++++++|++|++|++|||+|+|.
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G--~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~---- 70 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DG--RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGP---- 70 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CS--SCEEEEEEEEETTEEESEEETT-EEEEEEET-----
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CC--EEEEEEEEeEECCcCccccCCCCEEEEEEeCC----
Confidence 469999999999999999 9999 9999999999999 67 45999999999999999999999999999985
Q ss_pred hhccccccccCCCeEEE
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
+ |+++||+||+
T Consensus 71 ---~---~i~eGDiLyV 81 (81)
T PF14578_consen 71 ---T---QIKEGDILYV 81 (81)
T ss_dssp -------TB-TT-EEEE
T ss_pred ---c---cCCCCCEEeC
Confidence 3 9999999995
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=164.54 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=103.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....|.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 3589999999999999999998876542222222222122222211 11248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCH-HHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++.-.. +...++..+.. .++|+||++||+|+... +..+.
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~----------------- 126 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK----RQVST----------------- 126 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----CcCCH-----------------
Confidence 8899999999999999864221 22233333333 35899999999998621 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.|+.+++.+|+..+
T Consensus 127 --~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 127 --EEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred --HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111112111 15799999999999999999987654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=166.87 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+|+...+.....+.+...+. ..+.... ....|+||||||...|..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDN--------------EPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECC--------------EEEEEEEEeCCCchhhHHHh
Confidence 46999999999999999999987765333232221111 1111110 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..+|++|||+|+++....++...| ..+. ..++|+|||+||+|+...+ ..+.
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~~---------------- 127 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVTT---------------- 127 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccCH----------------
Confidence 9999999999999999987666665433 2222 2468999999999985210 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......... ..+++++|||++|.||.++|.+|+..+
T Consensus 128 ---~~~~~~a~~---------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 128 ---EEGRNLARE---------------FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHHHHHHH---------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 001111111 125899999999999999999987543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=165.49 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|.+++|||||+++|.+..+... .+++...+. .+... ....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~---------------~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE---------------KHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC---------------CceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765422 111111111 11100 0135999999999999999998
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|||+|+.+..... ....+. ++. ..++|+|||+||+|+...+ ..
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~------------------ 119 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------TA------------------ 119 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------CH------------------
Confidence 999999999999998753211 112222 222 2579999999999985211 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+....+. ....+++++|||++|.||.+++.+|..
T Consensus 120 -~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 -EEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred -HHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 1111111101110 012468999999999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=163.66 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|.+++|||||+++|....+.....+.+...+. ..+.... ....|.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEE-EEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 35999999999999999999976654332222211110 0111110 01247899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..+++.+|++|||+|+++......... +..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 999999999999999987432222222 222322 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.. .++ ++++++||++|.||.+++.+|+..
T Consensus 126 ---~~~~~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 ---REEGQALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ---HHHHHHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 000011111 012 589999999999999999988753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=164.23 Aligned_cols=156 Identities=19% Similarity=0.095 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+++|||||+.+|+...+.....+++...+. ..+.... ....|.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECC--------------EEEEEEEEECCCcccchhHH
Confidence 35899999999999999999866554332232221111 1111110 01247899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..+|++|||+|.++....+... ++..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc---------------
Confidence 99999999999999987643333222 222222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ ..+... -.++++++||++|.||.+++.+|+..+
T Consensus 126 --~~~~-~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 126 --KEQG-QNLARQ--------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --HHHH-HHHHHH--------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0000 111110 015899999999999999999987543
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-16 Score=165.64 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|++..+.....+.+..++... +.... -....|.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 589999999999999999998776544444333332211 11100 0012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+... .| ..+. ..++|+|||+||+|+...-. .... +.
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~---v~------------- 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN---LDRK---VT------------- 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc---ccCC---cC-------------
Confidence 9999999999999998754443332 12 2222 24689999999999862100 0000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...........+ ..++|++||++|.||.+++..|+..+..
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 001111111111 2378999999999999999998876544
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=192.37 Aligned_cols=150 Identities=24% Similarity=0.339 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-------
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH------- 867 (1384)
+|+|||++|+|||||+++|++.... ....+|+|.+.....+.+. ...|+||||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 3899999999999999999986542 2344666665443333332 235999999997
Q ss_pred -cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 868 -ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 868 -e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..|...+..++..+|++|||||+..|+.+....++.+++..+.|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~-----~~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE-----DA--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc-----cc---------------
Confidence 345556677888999999999999999999999999999999999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
....+...|+ .+++++||.+|.||.+|+..+...+
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 0011222232 2689999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=166.49 Aligned_cols=167 Identities=16% Similarity=0.088 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+++|.+..+.....++++.++....+.+..-. .......-....|.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSG----PGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcc----ccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 458999999999999999999877655444444443332222221100 0000000011248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-..+....| ..+.. .+.|+|||+||+|+... +...
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~v~----------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ----RQVS----------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc----CccC-----------------
Confidence 9999999999999999874333333222 22322 36899999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++++||++|.||.+++.+|+..+
T Consensus 140 --~~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 --EEQAKALADKY---------------GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred --HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987644
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=164.62 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+.+|++..+.......++..+....+.+.. ....|.||||||+..|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhH
Confidence 3499999999999999999997766543333333222111111111 01248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH-HH-H------hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LL-K------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll-k------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...++.+|++|||+|+++....+....|. .+ . ..++|+|||+||+|+.. +...
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~-------------- 132 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-----RQVS-------------- 132 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-----cccC--------------
Confidence 99999999999999998754434333331 11 1 13589999999999851 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+... ..++++++||++|.||.+++..|+.
T Consensus 133 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 -----TEEAQAWCREN--------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -----HHHHHHHHHHC--------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 01111112222 1247999999999999999998864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=160.07 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=100.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|++|+|||||+++|.+..+......++|.++....+...... ..+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT--------------YKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE--------------EEEEEEECCCcccchHHH
Confidence 469999999999999999999887665555666666554433332100 248899999999997766
Q ss_pred HhcccccceeEEEeecc-------CCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIM-------HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~-------~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
...+..++.+|+++|.. ++...+....+.++.. ++|+|||+||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 65555555555555544 4333444444444433 8999999999999621 110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 0111112111 22479999999999999998876
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=161.11 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=102.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.|+|||||+++|.+..+.....+++...+.. +.. ....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~----------------~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK----------------GNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE----------------CCEEEEEEECCCCHhHHHHHHH
Confidence 7999999999999999999876654433332222111 111 1124899999999999999999
Q ss_pred cccccceeEEEeeccCCCC-HHHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||+|+++... .+....|..+.. .++|++|++||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999986322 223334443322 47899999999998521 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+ +...++.. .....++++++||++|.||..++.+|..
T Consensus 120 -~~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DEL---IEQMNLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHH---HHHhCccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 011 11111110 0123478999999999999999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=163.40 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=102.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999997765443333332222211111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 999999999999999875443333333 222 2356899999999998621 1110
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...... ..++++++||++|.||.+++..|+.
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHH
Confidence 011111111 1358999999999999999988764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=164.14 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++|+|||||+++|++..+.....+.+..... ..+.. ......|.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~--------------~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISC--------------SKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEE--------------CCEEEEEEEEECCCCCcchHHHH
Confidence 4899999999999999999987765333222211110 00000 01113489999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.++..+|++|||+|+++........ ++..++. .++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------- 128 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------- 128 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH-------------
Confidence 8999999999999998855433322 2333332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.... .+.. . ..+++++|||++|.||.+++.+|+.+
T Consensus 129 ----~~~~-~~~~-~-------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 ----NEGA-ACAT-E-------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ----HHHH-HHHH-H-------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 0000 0110 0 12578999999999999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=168.98 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=102.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|.+++|||||+.+|+...+.....+.++..+.. .+.... ....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDG--------------QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECC--------------EEEEEEEEECCCchhhHHHHHH
Confidence 8999999999999999999776643332222111100 000000 0123889999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+++.+|++|||+|+++.........| ..+.. .++|+|||+||+|+...+ .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~~-------------- 126 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVST-------------- 126 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccCH--------------
Confidence 99999999999999875443333332 22321 368999999999986310 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......... .+++|++||++|.||.+++.+|+..+.
T Consensus 127 ---~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 127 ---EEGAALARRL---------------GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ---HHHHHHHHHh---------------CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000111111 147999999999999999999986554
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=163.87 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|.+..+.....+.++.++....+.... ....|.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND--------------KRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 489999999999999999998776543333332222111111100 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... +....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~----~~~~~------------------ 126 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE----RVVSS------------------ 126 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc----cccCH------------------
Confidence 9999999999999997643322222 2333333 35799999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .++++++||++|.||.+|+.+|+..+
T Consensus 127 -~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 127 -ERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0011111111 14799999999999999999987654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=164.13 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=99.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+++|++..+.. ....+ .+....+.+ ....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~-~~~t~--~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVT-TIPTI--GFNVETVEY----------------KNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-CCCCc--CcceEEEEE----------------CCEEEEEEECCCChhhHHHHHH
Confidence 8999999999999999999776321 11111 111111111 1235999999999999999999
Q ss_pred cccccceeEEEeeccCCC-CHHHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|+|+|++.+- .......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 999999999999998752 12233333322 2357899999999998621 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111111100 123579999999999999999988753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=164.90 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=105.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh-
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~- 871 (1384)
|...|+|+|+.|+|||||+.+|+...+......+++..+....+.+.. ....|.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 345699999999999999999987766544333333222222221111 11248999999999997
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++...+..+|++|||+|+++....+....|. .+.. .++|+|||+||+|+... +..
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~--------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ----IQV--------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh----cCC---------------
Confidence 56788889999999999999876666665553 3332 35899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC---CCChhhHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t---GeGI~eLl~~L~~~ 1002 (1384)
.......+... ..++++++||++ +.||.+++..|+..
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 00111122211 126899999999 88888888777653
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=165.29 Aligned_cols=166 Identities=14% Similarity=0.195 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++|||||+.+|.+..+.....+++...+.. .+.... ....|+||||||+..|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 48999999999999999999877754444444332211 111110 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+... .| ..+.. .++|+|||+||+|+.. ...+...+.....+. ..
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~~---v~-- 136 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQKP---IT-- 136 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCCC---cC--
Confidence 8999999999999998855444442 23 33332 3689999999999852 111111111100000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.... ..+... .+.+++++|||++|.||.++|..++.
T Consensus 137 ~~~~-~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 137 PETG-EKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHH-HHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 0000 111110 12368999999999999999988765
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=158.92 Aligned_cols=157 Identities=26% Similarity=0.368 Sum_probs=105.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccccc-CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+..+|+|+|++|+|||||+++|++..+..... ...+.......+. .....+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT----------------DDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE----------------cCCeEEEEEECCCCCcch
Confidence 45679999999999999999999765432211 1111111000000 111358999999976543
Q ss_pred --------HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000626 872 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 872 --------~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
......+..+|++++|+|+.+.........+..+...+.|+||++||+|+... ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~----------- 128 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KE----------- 128 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HH-----------
Confidence 33455688899999999999986666667777777778999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+... ...++++++|++++.|+.+|+.+|.++
T Consensus 129 -------~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 129 -------DLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred -------HHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 011111222211 124589999999999999999988653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=166.16 Aligned_cols=152 Identities=26% Similarity=0.286 Sum_probs=99.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|....+.. ..+ .+|..+..+ .+....|.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~----t~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-TSP----TIGSNVEEI--------------VYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-cCC----ccccceEEE--------------EECCeEEEEEECCCCHHHHHHH
Confidence 459999999999999999998665432 111 222211111 0112359999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHH-HHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..||++|||+|+++..... ....| .++.. .++|+||++||+|+...+ +.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~---------------- 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TP---------------- 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CH----------------
Confidence 99999999999999998753211 12222 23322 358999999999985210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ ++... . ...+++++|||++|.||.+++.+|.
T Consensus 135 ---~~i~~~l---~~~~~---~----~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 135 ---AEISESL---GLTSI---R----DHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ---HHHHHHh---Ccccc---c----CCceEEEecccCCCCCHHHHHHHHh
Confidence 1111111 11100 0 1236899999999999999999885
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-16 Score=171.27 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.....|+|||..|+|||||+.+++...+.....+++...+....+.... ....|.||||||+..|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 5556799999999999999999987766544333332222222221110 01248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.++..+++.+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+.. ....
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-------~~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-------ccCC--------------
Confidence 9999999999999999999986554544433 2232 24689999999999851 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ---~~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 ---AKQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ---HHHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0001 11110 125889999999999999999987644
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=168.40 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+.+.|+|+|+.|+|||||+++|.+..+.. ..+.+....+ .+.+ ....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~--~i~~----------------~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE--ELTI----------------GNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceE--EEEE----------------CCEEEEEEECCCCHHHH
Confidence 456779999999999999999998765431 1111111111 1111 11248899999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++..++..+|++|||+|+++.-. ......+..+. ..++|+||++||+|+.. ....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCH------------
Confidence 988888999999999999986421 11223333222 35689999999999852 1111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhh-cccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYY-KNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~-~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+....+...-+- ........+++++|||++|.||.+++.+|.++
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 111111211100000000 00011234689999999999999999999764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=169.26 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|||+.|+|||||+.+|.+..+......+++.++....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4599999999999999999998766543333333232222221111 00248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...+..+|++|||+|+++.-..+... ++..+.. ..+|+|||+||+|+... +....
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~----~~~~~------------------ 130 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER----KVVET------------------ 130 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cccCH------------------
Confidence 99999999999999998754333322 2333332 34899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.||.+|+.+|...+
T Consensus 131 -~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 131 -EDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 0111111111 25799999999999999999998655
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=162.42 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+++|||||+++|.+..+.....++++..+....+..... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK--------------TIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHHHH
Confidence 35999999999999999999987765444444443332222222110 0248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..++++|||+|+++....+....| ..+.. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 9999999999999999864333332222 22322 35899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+.. ..++++++||++|.||..++.+|+..
T Consensus 128 -~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEK---------------NGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999998754
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=169.29 Aligned_cols=150 Identities=24% Similarity=0.281 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
.+.|+|||++|||||||+++|++..+......+.|.......+.+. ....++||||||+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCH
Confidence 3579999999999999999999875432222222221111111110 012599999999833
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHH-HHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|...+ ..+..+|++|+|+|++++....... +..++ ...++|+|||+||+|+...+ .
T Consensus 106 ~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~------- 170 (204)
T cd01878 106 QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------E------- 170 (204)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------H-------
Confidence 22222 2356799999999999876544332 22333 33468999999999996310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ..+. ...++++++||++|.||.+++.+|...
T Consensus 171 -----------~~---~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 -----------LE---ERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred -----------HH---HHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 00 0110 124589999999999999999988653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-16 Score=165.07 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|....+.. ..++++.++. .+.. ....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~----------------~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY----------------KNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE----------------CCEEEEEEECCCCHHHHHH
Confidence 3569999999999999999997654432 1122211111 1111 1124999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCC-HHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...++.||++|||+|+++... ......|. ++.. .++|+|||+||+|+...+ .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 9889999999999999987422 22223332 2222 358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+ ++.. .....+++++|||+||.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1100 012345899999999999999999885
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-17 Score=179.85 Aligned_cols=224 Identities=21% Similarity=0.266 Sum_probs=158.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEeccc------ccccch---hhc------cc-----
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAE------NIRERT---REL------KA----- 850 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~------~i~~~~---~~i------~~----- 850 (1384)
..+|.-+|||-|||||++.+|.+-. |...-.+.||+.+|...-... ..+..+ ... .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 4568999999999999999997532 333345778888875322110 001000 000 00
Q ss_pred ccccC-CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCC-ceEEEEeecccccCccc
Q 000626 851 NATLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKT 927 (1384)
Q Consensus 851 ~~~~~-~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~ 927 (1384)
...++ .+++.|+|||||.-+...|..|....|.++|+|.++.. .+|||-+||..+..+.+ .+||+-||+|++..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e--- 194 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE--- 194 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH---
Confidence 00111 34699999999999999999999999999999999875 68999999988877664 67889999999731
Q ss_pred CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000626 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 928 ~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
..++ .....|..++.. -+ ....|+||+||--+.||+-++++|+..++.+.
T Consensus 195 ------~~A~------------eq~e~I~kFi~~--t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 195 ------SQAL------------EQHEQIQKFIQG--TV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ------HHHH------------HHHHHHHHHHhc--cc----------cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 0011 112333333322 11 24569999999999999999999998876554
Q ss_pred HHhhhcccccceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEcc
Q 000626 1008 VEKLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
. ++..+.++.|+.+|.+.. .|.++.|-+..|+|++||.|-+-+
T Consensus 245 R---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 245 R---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred c---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 4 356777888988886643 467788889999999999997643
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=162.70 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|....+.. ..+++..++ ..+. +....|.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEE----------------ECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997554432 112111111 0111 1113489999999999999999
Q ss_pred hcccccceeEEEeeccCCCC-HHHHHHHHHH-Hh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.||++|||+|+++... .+..+.|..+ .. .++|+||++||+|+... ...
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~~----------------- 119 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------MSA----------------- 119 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------CCH-----------------
Confidence 99999999999999976321 1222333322 22 35899999999998521 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ +++.. ....+.++++||++|.||.+++.+|.
T Consensus 120 --~~i~~~~---~~~~~-------~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 120 --AEVTDKL---GLHSL-------RNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred --HHHHHHh---Ccccc-------CCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1111112 22100 12345789999999999999999885
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-16 Score=166.92 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|||.+++|||||+.+|....+..+ ...+++.++....+.+... ...|+||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 489999999999999999998776432 2222222222111211110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+... ++..+.. .++|+|||+||+|+... +...
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~----~~~~------------------ 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE----RVVK------------------ 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc----cccC------------------
Confidence 88999999999999998753332222 2233332 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+....... .++++++||++|.||.+|+.+|+..+..
T Consensus 126 -~~~~~~l~~~~---------------~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -REDGERLAKEY---------------GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00000111111 2589999999999999999999876543
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-16 Score=162.26 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+.+|++..+.....+.+...+. ..+.... ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 4899999999999999999988765444443322211 1111111 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++.-..+... ++..+. ..++|+|||+||+|+... ......+....... ..
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~-----v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKEKP-----VT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccCCC-----CC
Confidence 9999999999999998754333332 233333 357999999999998521 11111111000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
........... +..+++.|||++|.||.+++..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111112221 2247999999999999999988764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=157.84 Aligned_cols=144 Identities=26% Similarity=0.356 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH--
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~-- 872 (1384)
.|+++|++|+|||||+++|++..+. .+...++|..+....+.+. ...++||||||+..+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcchH
Confidence 5899999999999999999976542 2334455554433222221 23589999999877643
Q ss_pred ------HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.....+..+|++|+|+|+++.........+.. ..+.|+|||+||+|+...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~-------------------- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE-------------------- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc--------------------
Confidence 23356778999999999998665555444443 46799999999999863110
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
. +. .....++|++||.+|.||.+|+.+|..+
T Consensus 125 --------~---~~--------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 125 --------L---LS--------------LLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --------c---cc--------------ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 0 00 0124689999999999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.5e-16 Score=157.46 Aligned_cols=153 Identities=25% Similarity=0.237 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+......+++.++....+.... ....++||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 589999999999999999998776654434333333333322211 112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc---CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++.-....... +..+... ++|+||++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 99999999999999987433333333 3344443 4899999999998511 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+.. ..++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKE---------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 0111111111 125899999999999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=167.30 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..|+|||||+.+|++..+.....+.+...+... +... .....|+||||||+..|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-i~~~--------------~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHD-IFVD--------------GLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEE-EEEC--------------CEEEEEEEEECCCChhcccccc
Confidence 489999999999999999998776543333332221100 0000 0112489999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++..+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... ......+.. ..... ..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~~----~~~~~-v~ 135 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQR----YGKHT-IS 135 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHhh----ccCCC-CC
Confidence 8999999999999998854444443 3344433 36899999999998621 000000000 00000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .+.+++++|||++|.||.++|.+|+..+
T Consensus 136 ~~~~~~~~~~--------------~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 136 YEEGLAVAKR--------------INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHHHH--------------cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 0001111111 1236899999999999999999987654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=163.88 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=104.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC---
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH--- 867 (1384)
+.|.|+|||++|+|||||+++|++..+. .....|.|..+..+.+ ...|.||||||+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 3456999999999999999999975421 1223344444322211 135999999996
Q ss_pred -------cchhHHHHhccc---ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000626 868 -------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 868 -------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
..|..+...++. .++++++|+|+..++.......+.++...++|+++++||+|+...+ . ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~-~~-- 154 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------E-RK-- 154 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------H-HH--
Confidence 334444444444 4478889999998888777777778888899999999999986321 0 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...+... .++++++||++|.|+.+++..|..++
T Consensus 155 ------------~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 155 ------------KQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ------------HHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 0011111112111 25889999999999999999887654
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=188.73 Aligned_cols=149 Identities=27% Similarity=0.347 Sum_probs=110.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+. ...|.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~----------------~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL----------------GREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC----------------CcEEEEEECCCCCCcchh
Confidence 67999999999999999999977642 3345566655433333222 23599999999987
Q ss_pred h----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000626 870 F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 870 F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
| ......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~------~-------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE------E-------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc------h--------------
Confidence 2 333456778899999999999999988888888999999999999999997420 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.....+...|+ ..++++||.+|.||.+|+..|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00011222222 14789999999999999988865
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=161.17 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+++|++..+.....+.+...+.. .+.... ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA-DVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE-EEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 6899999999999999999877654333333222111 111110 0124899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.+..+|++|||+|+++.-..+.. .++..+.. .++|+|||+||+|+... ......+....... + ..
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~---v--~~ 134 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQEP---V--TY 134 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCCC---c--cH
Confidence 99999999999999874222222 12333332 37999999999998621 10000000000000 0 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.......... +.+++++|||++|.||.+|+..|+..
T Consensus 135 ~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 135 EQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111111111 22479999999999999999988754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=159.98 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|.+..+... .+.++..+ ..... .......++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~~~~------------~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TIPAD------------VTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Eeeee------------ecCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998766432 11111111 00000 000112489999999998888888
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+... .| ..++. .++|+|||+||+|+...+. . ..+. ..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~------~-~~~~-----------~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS------Q-AGLE-----------EE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc------h-hHHH-----------HH
Confidence 8889999999999998765544432 23 33432 3689999999999963210 0 0000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+..+...+ ....++++|||++|.|+.+++..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 01111111 111379999999999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=161.06 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+.++++..+.....+.+. ......+.... ....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 589999999999999999997766533222211 11111111110 011378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-HHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~------~~~~---------------- 125 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE------REVS---------------- 125 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------CccC----------------
Confidence 999999999999999874322222 22222322 46999999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
... ...+.. .+ .+++|++||++|.||.+++.+|+..
T Consensus 126 -~~~-~~~~~~------------~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 -SAE-GRALAE------------EW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred -HHH-HHHHHH------------Hh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 000 011111 01 1489999999999999999988753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=165.01 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=102.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.+.|+|+|.+|+|||||+++|.+..+... .+++...+ ..+. +....+.||||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTS--EELA----------------IGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccce--EEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 457799999999999999999987654321 11111111 1111 1123489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCC-HHHHHHHHHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|+|||+++... ......+..+ . ..++|+|||+||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 99999999999999999987422 1222233322 2 2578999999999985210 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...| ++.....-......+.+.+++|||++|.|+.+++.||..
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 01121112 111000000000124568999999999999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=158.91 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+|+|||||+++|++..+.....+.+...+. ...... .....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD--------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEEC--------------CEEEEEEEEECCChhhhhHHHH
Confidence 4899999999999999999977655433332221111 111110 0112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHH-HHHHHHHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++.-... ...++..+ . ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632111 11222222 2 257999999999998620 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 14899999999999999999987554
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=163.05 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=101.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....|.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~----------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVT----------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEE----------------ECCEEEEEEECCCChhhHHH
Confidence 3569999999999999999997554422 1122221111 011 11234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCC-HHHHHHHHHHH-h---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk-~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+..++..||++|||+|+++.-. ....+.|..+. . .++|++||+||+|+...+ +.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~--------------- 132 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------KA--------------- 132 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------CH---------------
Confidence 9999999999999999986321 22334443332 2 358999999999986211 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+... .++.. -....+.+++|||++|.||.+++.+|...
T Consensus 133 ----~~i~~~---~~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 133 ----AEITEK---LGLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred ----HHHHHH---hCccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 011111 12210 01234678899999999999999998754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=159.04 Aligned_cols=155 Identities=25% Similarity=0.213 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++..+....+.+.. ....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 489999999999999999998776544333333322211111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|++++-..+....| ..+. ..++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~~---------------- 125 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVSK---------------- 125 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCCH----------------
Confidence 889999999999999886544333332 2222 236899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+... .++++++||++|.||.+++.+|...
T Consensus 126 -~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 126 -SEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred -HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 0111111111 2478999999999999999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-16 Score=162.59 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=98.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+.+|.+..+.. ..+++...+. .+. +....|+||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVE----------------YKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEE----------------ECCEEEEEEECCCChhcchHHHH
Confidence 7899999999999999998764432 2222211211 111 11235899999999999999988
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHHHHH-h---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~llk-~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|||+|+++.-.. .....|..+. . .++|+|||+||+|+.. ..+.
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~~------------------ 118 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG------ALSV------------------ 118 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc------CCCH------------------
Confidence 99999999999999773211 1222333232 2 2489999999999852 0110
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+....+ ..+..+.|++|||++|.||.++|.+|...
T Consensus 119 -~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 119 -EEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred -HHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 111111110010 01234578999999999999999998653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=166.83 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.|+|||||+++|++..+.......+ ..+....+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999999776543222211 111111111110 0024889999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||+|+++....+....| ..+ ...++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999875433322222 222 2247999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+...+ .. ...++++++||++|.||.+|+.+|+..+.
T Consensus 125 ~~~~~~~~-~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-EL-------------DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hh-------------hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000001 00 01257899999999999999999987654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-16 Score=163.70 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC----cchh
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----e~F~ 871 (1384)
.|+|+|++++|||||+++|.+.... +...+.+.+ .. ..+|||||. ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~------------------~~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEF------------------ND--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEE------------------CC--CCcccCCccccCCHHHH
Confidence 3999999999999999998754311 111111111 01 126999995 3454
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..++..+|++|||||++.+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 444556889999999999998765544333332 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
..+...+...++ ..|+|+|||++|.||.+|+..|..++..
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 112223333332 2599999999999999999998776543
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=164.75 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|+.++|||||+.+|....+.....+.+...+.. .+..+. ....|.||||||++.|..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDG--------------RTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECC--------------EEEEEEEEECCCchhhhh
Confidence 34569999999999999999999877754443333221110 011110 112489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
++..+++.+|++|||+|+++.-..+... .| ..+.. .++|+|||.||+|+... ......+.... +
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~------~ 134 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQG------Q 134 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhcc------C
Confidence 9999999999999999998754444432 23 22222 46899999999998521 11111110000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......-...|... .+.++++.|||++|.||.++|.+|+..+
T Consensus 135 ~~v~~~~~~~~a~~-------------~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQ-------------IHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHH-------------cCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00000000111110 0235899999999999999999987654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=163.33 Aligned_cols=156 Identities=22% Similarity=0.205 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|+|..++|||||+.+|....+.. ..+++..++ ..+. +....++||||||+..|..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEE----------------ECCEEEEEEECCCCHHHHHH
Confidence 3469999999999999999997654432 222222111 1111 11234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHH-HHHHHHHH-Hh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...++.+|++|||+|+++.-... ....|..+ .. .++|+|||+||+|+... .+
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------~~---------------- 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MN---------------- 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------CC----------------
Confidence 999999999999999998743221 12223222 21 36899999999998621 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...| |+.. + ..+.+.+++|||+||+||.+++.+|...+
T Consensus 136 ---~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 ---AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ---HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01111112 2210 0 01245688999999999999999987543
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=167.09 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT---- 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~---- 871 (1384)
.|+|+|..++|||||+++|.+..+.....++++..+....+.+... ...++||||||+..|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR--------------VYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE--------------EEEEEEEeCCCcccCCccch
Confidence 4899999999999999999987765444444332221111111110 1248899999987652
Q ss_pred ----HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH------hcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 872 ----NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ----~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
..+.+.+..||++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 1244567889999999999875433333322 2222 245899999999998521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.... ..++|++|||++|.||.+||..++..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111110 13689999999999999999888754
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-15 Score=175.81 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC-----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 866 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----- 866 (1384)
.+..|||+|.|++|||||+|+|++.. +..+...|+|.+.-...+. ++...|.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------RDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------ECCeEEEEEECCCCCccc
Confidence 44569999999999999999999754 3445566777664333333 3345699999999
Q ss_pred -----CcchhHHHH-hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 867 -----HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 867 -----He~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
++.|+..+. ..+..||+|+||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 455655543 56778999999999999999999999999999999999999999997320 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....+. ..+...|.. -.+.|+|++||++|.||..|+..+...+.
T Consensus 308 ---~~~~~k---~~i~~~l~~--------------l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 ---TMEEFK---KKLRRKLPF--------------LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ---HHHHHH---HHHHHHhcc--------------ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 111111 122222222 13569999999999999999998876543
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=167.57 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+++|++..+.....+.++.++....+.+... ....|.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987776555454544432222222110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
..++.+|++|||+|+++.-....... +..+.. .++|+|||+||+|+...+ ....
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~~--------------- 129 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVKD--------------- 129 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccCH---------------
Confidence 99999999999999987433333322 233332 236899999999985210 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
... ..+... + .+++++|||++|.||.+|+.+|+..+.
T Consensus 130 ----~~~-~~~~~~------------~--~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 130 ----DKH-ARFAQA------------N--GMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ----HHH-HHHHHH------------c--CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 111111 0 147899999999999999999976543
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=195.17 Aligned_cols=152 Identities=23% Similarity=0.325 Sum_probs=112.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.|+|+|+|++++|||||+++|++.... .....|+|.+.-...+. |....|.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~----------------~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE----------------WAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE----------------ECCEEEEEEeCCCcCCCCc
Confidence 356999999999999999999976532 23456676654322222 2224589999999653
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|...+..++..||++|||||+.+|+.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4556667888999999999999999999888899999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 400 ---------~~~~~~~~lg~-----------~---~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 400 ---------YDAAEFWKLGL-----------G---EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ---------hhHHHHHHcCC-----------C---CeEEEECCCCCCchHHHHHHHHhc
Confidence 00011222232 1 347999999999999999987654
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=160.27 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|++..+.....+.+...+....+..... ...+.||||||+..|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 4899999999999999999988776554444443322122211110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc----CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++.-....... +..+... .+|+|+|.||+|+...+ ....
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~----------------- 126 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL----------------- 126 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc-----------------
Confidence 99999999999999977322222222 2333222 25799999999985210 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......+... ..++++.+||++|.||.+|+..|..++.
T Consensus 127 -~~~~~~~~~~~--------------~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 127 -MEQDAIKLAAE--------------MQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred -cHHHHHHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00000111110 1147899999999999999999887653
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=160.53 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++|+|||||+.+|++..+.....+++.... ...+.+.. ....+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 499999999999999999997766543333322111 11111110 012478999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|+|+|++++...+....| ..+ . ..++|+|||+||+|+...+ ....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~~----------------- 126 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVST----------------- 126 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccCH-----------------
Confidence 999999999999999986555544333 222 2 2468999999999985210 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...... ++ ++++++||++|.||.+++.+|...+.
T Consensus 127 --~~~~~~~~~-------------~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 127 --EEGKELAES-------------WG--AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred --HHHHHHHHH-------------cC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000001111 11 48999999999999999999987664
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=163.58 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||..++||||||.+|....+.......++..+....+..+. ....|.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999997665443333333333222222111 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...++.+|++|||+|+++....+.... +..+.. .++|+|||.||+|+... +.-.
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~----~~v~------------------- 129 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK----RQVA------------------- 129 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc----cCCC-------------------
Confidence 999999999999999988544433333 233332 46899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++.|||++|.||.++|.+|+..+
T Consensus 130 ~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 01111111111 25899999999999999999987644
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=158.26 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|++..+.....+.+....... +.... ....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT-VTVDG--------------KQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE-EEECC--------------EEEEEEEEeCCCcccccccch
Confidence 589999999999999999998876433333332222211 11110 012489999999999988888
Q ss_pred hcccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++....+.. .++..+.. .++|+|||+||+|+...+ +....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE------NTLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch------hhhhhcccCCCcc------C
Confidence 888999999999999874332222 23333333 359999999999987321 1000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 00111111111 2348999999999999999988764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=162.69 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....++||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE----------------YKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE----------------ECCEEEEEEECCCCHhHHHHH
Confidence 459999999999999999997554432 1122111111 111 111348999999999999999
Q ss_pred HhcccccceeEEEeeccCCCC-HHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-. ......|. ++.. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 999999999999999976211 11222232 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
..+... .++. +.. ...++++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~~---l~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTEK---LGLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHHH---hCCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 011111 1221 000 13457889999999999999999987665543
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=164.76 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|.+..+......++...+....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987665433333333332222222110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.++++|||+|+++....+.+..| ..+.. .++|+|||+||+|+...+ ...
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----~~~------------------ 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR----SVA------------------ 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc----CCC------------------
Confidence 9999999999999999875444444433 33333 469999999999985211 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
......+... ..++++++||++|.||.+++.+|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111110 125899999999999999999998776553
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=157.73 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--cccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t--~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.|+|||.+++|||||+.+|+.. .+.....+++..++....+++.. -....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 4899999999999999999854 33333333332232222222210 00124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
+...+..+|++|||+|+++.........| ..+.. .++|+|||+||+|+... .....
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~----------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK----AEVTD----------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cCCCH-----------------
Confidence 99999999999999999874333323322 33333 35899999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+... ..++++++||.+|.||.+++..|...
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011110 12579999999999999999988754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=164.49 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|||+.++|||||+.+|++..+... .+.++..+....+.+.. ....|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 45699999999999999999997765321 12222111111111110 0124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHH-HHH-HHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~-llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
+..+++.+|++|||+|+++....+.+. .|. .+. ..++|+|||+||+|+... ..+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------- 139 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------- 139 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC-------------
Confidence 999999999999999998754444443 232 222 135799999999998621 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
........... .+++|++||++|.||.+++.+|...+
T Consensus 140 ----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 ----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 25799999999999999999988655
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=166.08 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=102.4
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhccc
Q 000626 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 879 (1384)
Q Consensus 800 lGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~ 879 (1384)
||+.++|||||+.+|++..+......++..++....+.++. ....|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997766543333332222212111111 1124899999999999999999999
Q ss_pred ccceeEEEeeccCCCCHHHHHHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000626 880 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 880 ~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
.+|++|||+|+++....+....| ..+.. .++|+|||+||+|+.. +... . ..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-----~~v~-----~--------------~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-----RKVK-----A--------------KSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-----ccCC-----H--------------HHH-
Confidence 99999999999987655555444 33443 4689999999999852 0000 0 000
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 135899999999999999999997654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=160.55 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|++..+.....+.+...+.. .+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG--------------KQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC--------------EEEEEEEEeCCCchhhhhccc
Confidence 49999999999999999999876654333332222111 111110 012489999999999998888
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++..+|++|||+|+++.-..... . ++..++. .++|+|||+||+|+...|. ....+....... ..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~~~-----v~ 136 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQEP-----VK 136 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccCCC-----cc
Confidence 889999999999999863222222 1 2223332 3789999999999863211 100000000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
........... +.+++|+|||++|.||.+|+.+|...
T Consensus 137 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 00001111111 23589999999999999999988753
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=160.41 Aligned_cols=167 Identities=18% Similarity=0.214 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+++...+.....+.+...+.. .+.... ....|+||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEE-EEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 358999999999999999999876654333333211111 111110 11248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..+|++|||+|+++.-..+... ++..+.. .++|+|||.||+|+... ...+ ..+...... ..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~~~~~~~---~v-- 135 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKLKEKKLT---PI-- 135 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHHhhccCC---CC--
Confidence 99999999999999998854444432 2233332 36899999999998521 0000 000000000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
............ +.+++++|||+||.||.+++..|+.
T Consensus 136 ~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 136 TYPQGLAMAKEI--------------GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CHHHHHHHHHHc--------------CCcEEEEecccccCCHHHHHHHHHH
Confidence 000111111111 2358999999999999999988864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=194.29 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=113.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc----
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe---- 868 (1384)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+ ....++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----------------~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----------------DGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----------------CCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 234556665443322222 22358899999953
Q ss_pred ------chhHHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 869 ------SFTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 869 ------~F~~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
.|..++ ..++..||++|||||++++++.|+...+..+...++|+|||+||+|++.. .....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~~----- 581 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQR----- 581 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHHH-----
Confidence 244443 34578899999999999999999999998888889999999999999621 10000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
+...+... +. .-..+++++|||++|.||.+|+..+...+.
T Consensus 582 -------------~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 582 -------------LERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred -------------HHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 10111110 10 013468999999999999999999887664
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=160.60 Aligned_cols=160 Identities=10% Similarity=0.079 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+.....+++..++....+..... ...|.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--------------EITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCchhHHHhhH
Confidence 4899999999999999999987765444343332222112221110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++....+... ++..++. ..+| |+|+||+|+...... .-...
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~----~~~~~--------------- 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPP----EEQEE--------------- 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccc----hhhhh---------------
Confidence 9999999999999998743333322 2233333 2456 678999998631100 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+......+... + .+++++|||++|.||.+|+.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~--~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------M--KAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 1 15899999999999999999987544
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=153.16 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH-----
Q 000626 799 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 872 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~----- 872 (1384)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999976654 33344444443333222210 24699999999877643
Q ss_pred --HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 873 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 873 --~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.....++.+|++|||+|+..+....+..++..+...++|+|||+||+|++.. ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~~~-------------- 125 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEEEL-------------- 125 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHHHH--------------
Confidence 4445778899999999999988877776677777789999999999998731 111000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ...... .....++++++||.+|.|+..|+.+|..+
T Consensus 126 -~~-~~~~~~-------------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 126 -LE-LRLLIL-------------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -HH-HHHhhc-------------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 00 000000 11245799999999999999999988753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=161.23 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+.+.|+|+|+.|+|||||+++|.+..+... ....|...... .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHH
Confidence 3456799999999999999999987644211 11111111000 0112348999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCC-HHHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++...+..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ...
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~------------- 133 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------APA------------- 133 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CCH-------------
Confidence 999889999999999999976321 2222233222 2346899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+ ++.. + ....++++++||++|+||.+++.+|+.
T Consensus 134 ------~~i~~~l---~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 134 ------EEIAEAL---NLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ------HHHHHHc---CCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1111111 2210 0 113457899999999999999999863
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=162.33 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|+|++++|||||+++|++..+..+ ..+.+...+....+..... ...|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER--------------VVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE--------------EEEEEEEECCCchhhhhhh
Confidence 489999999999999999998776532 2222222111111111110 0137899999999999998
Q ss_pred HhcccccceeEEEeeccCCCCHHHH-HHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...+..+|++|||+|+++....+.. .++..+... ++|+|||+||+|+... ......+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~v~------------- 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ------DRSLRQVD------------- 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc------ccccCccC-------------
Confidence 8889999999999999875333222 233444433 6899999999998521 00000000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+....... .++++++||++|.||.+|+.+|...+.
T Consensus 129 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADEI---------------KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 257899999999999999999986653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=161.83 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=77.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|||+.++|||||+.+|.+..+.....+ .+|..+..+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP----TTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc----cCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 79999999999999999997655432222 222211111 112235899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHHH--hcCCceEEEEeecccc
Q 000626 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk--~~~vP~IVaINKiDl~ 922 (1384)
++..+|++|||||+++..... ....|..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998754322 222233332 2579999999999986
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=171.19 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++|||||+.+|++..+.....+++. ++....+.... ....|+||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~--------------~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRG--------------EVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECC--------------EEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998777654333332 11111111110 012488999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh------------cCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~------------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
.++..+|++|||+|+++....+.+..| ..+.. .++|+|||+||+|+... +...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~----~~v~---------- 132 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP----REVQ---------- 132 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc----cccC----------
Confidence 889999999999999874333322222 22211 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...+... ..+++++|||++|.||.+|+.+|+.++
T Consensus 133 ---------~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 133 ---------RDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---------HHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 01111111110 135899999999999999999998754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=177.72 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=96.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-------
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH------- 867 (1384)
|.|+|+|++|+|||||+++|++..+......+.|.++....+.+. ....++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999875433333333433321111110 1235999999997
Q ss_pred --cchhHHHHhcccccceeEEEeeccCCCCHHHHH----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 868 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 868 --e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
+.|...+ ..+..||++|+|||+++........ .+..+...++|+|+|+||+|+... ..
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~--------- 318 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PR--------- 318 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------Hh---------
Confidence 3344333 3477899999999999875543332 233333346899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+. .+.. ...++|+|||++|.||..|+.+|..+
T Consensus 319 -------------v~-~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 -------------IE-RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -------------HH-HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 00 0100 11368999999999999999988653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=157.42 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=96.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-hhHHHH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 875 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~-F~~~r~ 875 (1384)
|+|+|++++|||||+.+|+...+.....+.+. ......+.+. .....+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTID--------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEEC--------------CEEEEEEEEECCCCcccccchHH
Confidence 89999999999999999986544322222111 0100111110 0112488999999985 455677
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH-----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+.++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788999999999999886443333332 2222 237999999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1384)
........... .++++++||++|. ||.++|..|+..+
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEGEKLASEL---------------GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHHHHHHHHc---------------CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00000111111 1589999999995 9999999987654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=158.93 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=99.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|..++|||||+++|.+. +.... ...+|...... .+....++||||||+..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~~----~~t~g~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKKV----APTVGFTPTKL--------------RLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCccc----cCcccceEEEE--------------EECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999865 22111 11222211110 011235899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..||++|||||+++.-..+ ....+..+.. .++|+|||+||+|+.... +
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------- 117 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------- 117 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C-------------------
Confidence 999999999999998743222 2333443332 468999999999986310 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC------CChhhHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG------eGI~eLl~~L~ 1000 (1384)
...+...+....+. ...+..+++++|||++| .||.+-|.||+
T Consensus 118 ~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 01111111111110 01123578999999998 89999999985
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=155.34 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-----ch
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-----~F 870 (1384)
.|+|+|++++|||||+++|++..+.. .+ | ++.. + ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~--t--~~~~-------------------~---~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KK--T--QAVE-------------------Y---NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--cc--c--eeEE-------------------E---cCeeecCchhhhhhHHHH
Confidence 38999999999999999998664321 00 1 1100 1 12689999972 24
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++ ..++.+|++|||+|++++...++..++.. .+.|+|+|+||+|+... ....
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~~----------------- 107 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVDI----------------- 107 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccCH-----------------
Confidence 4333 45889999999999998876665443333 24599999999998520 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 108 --~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 --ERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred --HHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 01111121211 23789999999999999998763
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=159.00 Aligned_cols=164 Identities=14% Similarity=0.201 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.++....+.....+++...+. ..+..+. ....|+||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDG--------------NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCCccccccch
Confidence 4899999999999999999987775444333322111 0111110 112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhh--HHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN--TDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~--~~v~~ef~ 949 (1384)
.+++.+|++|||+|.++.-..+.. . ++..++. .++|+|||.||+|+... +. .+..+. ..+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~----~~-----~~~~~~~~~~v~---- 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD----KQ-----YLADHPGASPIT---- 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC----hh-----hhhhccCCCCCC----
Confidence 999999999999999886555443 2 3444443 36899999999998521 00 000000 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
........... +..+++.|||++|.||.++|..|+..+
T Consensus 135 --~~~~~~~a~~~--------------~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 --TAQGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred --HHHHHHHHHHc--------------CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00111111111 123699999999999999999887643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=159.29 Aligned_cols=158 Identities=21% Similarity=0.222 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|.+..+.......++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK--------------IIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHhhHH
Confidence 5899999999999999999987765433333332222111211110 12488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++.-....+..| ..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~----------------- 124 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD----------------- 124 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC-----------------
Confidence 999999999999999874333322222 22322 35899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
......+... ..++++.+||++|.||.+++.+|+..+..
T Consensus 125 -~~~~~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 -SNIAKSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHHHHHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000111110 12489999999999999999998876543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-16 Score=177.99 Aligned_cols=132 Identities=26% Similarity=0.335 Sum_probs=102.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcC------------ccc----ccccCceeEeeeeeEecccccccchhhccccc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGT------------NVQ----EGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t------------~v~----~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
..++|| +.|+.|||||||||+++|... .+. ....+|||+...+..+-++....--..++...
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 457898 899999999999999999631 111 12247788877776655443222222222222
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+..-|++||.|||.+|++.+..+++++|++++|||+.+|+..||...|+++..-.+.-++++||||+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3334459999999999999999999999999999999999999999999999999888888999999984
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=156.89 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+.+|.+..+.....+.+...+ ...+.+.. ....+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDG--------------RQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECC--------------EEEEEEEEeCCCcccchhhhH
Confidence 489999999999999999986654322222111110 00011110 012478999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-----HHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-----llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..++++|||+|+++....+....|. +....++|+|+++||+|+... +....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~----~~~~~----------------- 126 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD----RQVSR----------------- 126 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc----CccCH-----------------
Confidence 9999999999999998743322222221 122346999999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......... + +.++++++||++|.||.+++.+|+..+
T Consensus 127 --~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 127 --EDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --HHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 001111111 1 236899999999999999999987543
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=155.64 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|+...+.....++++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 4899999999999999999987776444444443332222222110 02488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++.-..+....| ..+.. .++|+|||.||+|+... +...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~------------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG------------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC-------------------
Confidence 999999999999999874322222222 22222 35899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+... + .+++++|||++|.||.+++.+|+.+
T Consensus 125 -~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 -DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0011111111 1 1589999999999999999998753
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=162.44 Aligned_cols=158 Identities=21% Similarity=0.155 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||+.++|||||+++|++..+......+++.+++...+.+... ...|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~--------------~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------------PIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHHH
Confidence 45999999999999999999987665433333322222111111110 0138899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+....| ..+.. .++|+||++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999874433333222 22222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......+... .++++++||++|.||.++|.+++..+-
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 258999999999999999988876543
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=161.64 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||..++|||||+++|++..+.....++++.++....+.+.. . ....|.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~----------~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP----------G---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC----------C---CEEEEEEEeCCcchhHHHHH
Confidence 4599999999999999999998776543333333222211111100 0 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-....+.. +..+. ...+|+||+.||+|+...+ ...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~----------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT----------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC-----------------
Confidence 999999999999999987422222222 22222 2347889999999986210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
......+... ++ ++++++||++|.||.+++.+|...+...
T Consensus 129 ---~~~~~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 ---REEAEKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ---HHHHHHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111111 11 5899999999999999999998766544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=155.84 Aligned_cols=160 Identities=22% Similarity=0.310 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC---
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH--- 867 (1384)
..|-||++|.+++|||||+++|++.. ...+.++|.||.+..+.+.. .+.|+|.||+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------------~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------------ELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------------cEEEEeCCCcccc
Confidence 45669999999999999999999865 56778899999997655432 3889999994
Q ss_pred -------cchhHHHHhcccc---cceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000626 868 -------ESFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 868 -------e~F~~~r~rg~~~---aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+.+..+...++.. ..++|+|||+.|++....++.+.++...++|++|++||||.+. ....
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~------~~~~---- 153 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK------KSER---- 153 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC------hhHH----
Confidence 2344444444432 5689999999999999999999999999999999999999983 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+...| ++.. .....++..|+.++.||++|...|..++.
T Consensus 154 -----------~k~l~~v~~~l---~~~~---------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 154 -----------NKQLNKVAEEL---KKPP---------PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred -----------HHHHHHHHHHh---cCCC---------CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 11122222222 1111 11112888999999999999998887664
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-15 Score=153.21 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=100.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+++|++..+.....+.+. +.....+.+.. ....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHHH
Confidence 89999999999999999997664433322211 11111111110 0124889999999999999999
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|+|+|+++.... +...++..+.. .++|++||+||+|+...+ ...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec-------------------
Confidence 99999999999998774221 12223333322 369999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 124 ~~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 124 KEEGKALAKEW---------------GCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHhh
Confidence 01111122211 1589999999999999999998753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=156.83 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|+...+.....+.+...+. ..+.... ....|.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~--------------~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECC--------------EEEEEEEEECCCchhhHhhh
Confidence 35999999999999999999987765443333322211 1111110 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHH-HHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+++.+|++|||+|+++....+.. ..| ..++. .++|+|||.||+|+... ......+..+.... .
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~~---v-- 139 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQTP---V-- 139 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCCC---C--
Confidence 9999999999999999886444443 223 33333 36899999999998521 11111111000000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCC-hhhHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1384)
............ +.++++.|||++|.| |.++|..++.
T Consensus 140 ~~~~~~~~a~~~--------------~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 140 SYDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CHHHHHHHHHHc--------------CCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 001111111111 124899999999998 9999988765
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=161.84 Aligned_cols=187 Identities=21% Similarity=0.269 Sum_probs=110.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
.+.-|...|+|+|.+++|||||+|.+.+..|..-.. .+.++++.+.+..- ..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-----------------eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-----------------ETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-----------------ceEEEEecCCc
Confidence 355677889999999999999999999887653222 22223332222211 13699999999
Q ss_pred Cc------------chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh-cCCceEEEEeecccccCcccCCCchH
Q 000626 867 HE------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 867 He------------~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.. +|.....+++..+|++|+|+|+++.-.+.....|..+.. .++|-|+|+||+|.+. ..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k------~k-- 201 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK------QK-- 201 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch------hh--
Confidence 21 122344467888999999999986333333345555555 4689999999999862 11
Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHcCCchhhhhc-ccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 934 VKAIKQQNTDVQN-EFNMRLVQIVTQLKEQGMNTELYYK-NKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~-ef~~~i~~I~~~L~~~Gl~~e~~~~-~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..|......+.+ .+......+...+.. ......|+ ...|..+-.+|++||++|+||.+|-++|+..+
T Consensus 202 -~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 202 -RLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred -hHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111110000000 000000111111111 11111111 12355677899999999999999999998654
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=151.84 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=116.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-------ccccCc-----eeEeeeeeEecccccccchhhcccccccCCC
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-------~ge~gG-----ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..++.+.|+|+|..++||||++.+|...... .....+ +.+++|...+.+ ..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-----------------~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-----------------DT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-----------------cc
Confidence 4577788999999999999999999865421 111111 223333322221 25
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC-CceEEEEeecccccCcccCCCchHHHH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
+++|+|||||..|..|+.-.++.++++||+||++.+......+.++++...+ +|++|++||.|+...|..
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 7999999999999999999999999999999999987777778888998888 999999999999865521
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..|...|... + -.+|+|+++|..++|+.+.|..|..
T Consensus 140 ----------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 140 ----------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred ----------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHHHHHh
Confidence 1122222211 0 2469999999999999988877654
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=154.68 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.++.+..+.....+.+ .+.....+..+. ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 48999999999999999998766543332221 111111111110 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+.. .++..+.. .++|+|||+||+|+... ......+...... ...
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGEK-----PVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCCC-----CcC
Confidence 999999999999999875433332 23444443 36899999999998521 1110000000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+....... +..+|++|||++|.||.+|+..++
T Consensus 136 ~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 01111111111 224899999999999999998765
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=154.92 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+.....+.+...+. ..+..+. ....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDE--------------QRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECC--------------EEEEEEEEECCCchhhhhcch
Confidence 4899999999999999999987765444333322211 1111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+.. . ++..++. .++|+|||.||+|+... .+....+..+... .. .
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~------~~~~~~~~~~~~~---~v--~ 136 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD------LSTLMELSHQRQA---PV--S 136 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC------hhHHHHHHhcCCC---CC--C
Confidence 999999999999999875444442 2 3333433 36899999999998521 0000001000000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCC-hhhHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1384)
........... +.++++.|||++|+| |.++|..++.
T Consensus 137 ~~e~~~~a~~~--------------~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQGCAIAKQL--------------GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHHHHHHh--------------CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 00111111111 123799999999995 9999988875
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=187.84 Aligned_cols=154 Identities=24% Similarity=0.299 Sum_probs=108.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.++|+++||+|+|||||+++|++.+...+...|+|.+.-...+.+ ....++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~----------------~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST----------------TDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc----------------CceEEEEEECCCcccccc
Confidence 3467999999999999999999988776677788877543333322 223599999999998853
Q ss_pred H----------HHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 873 L----------RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 873 ~----------r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
. .... ...+|++|+|||+++... ....+.++...++|+|+|+||+|+.. ...+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~------~~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE------KQNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh------ccCcH------
Confidence 2 1112 246899999999988533 34456677888999999999999852 11110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+. .|.+. + .+|+||+||.+|.||++|+..+....
T Consensus 132 ---------id~~----~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------IDID----ALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HHHH----HHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0011 11110 1 25899999999999999999887654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=168.98 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=99.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|+|||.+++||||||++|+.........++.|. ++|...+. ....|+||||||...
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----------------~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----------------DYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----------------CCcEEEEEeCCCccCCCCcc
Confidence 999999999999999999876544333333343 34433221 113499999999532
Q ss_pred --hhHHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 870 --FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
+.....+.+..|+++|+|||+++.-..+.+..| ..|.. .+.|+|||+||||++..+ ... .
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~---~--- 291 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER---E--- 291 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH---H---
Confidence 334455677789999999999864334444444 33433 368999999999986311 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+.. ..+++|+|||++|+||.+|+.+|..++.
T Consensus 292 -----------~~~~~~~~~---------------~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 -----------KRAALELAA---------------LGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred -----------HHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 000001111 1147999999999999999999987654
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-15 Score=160.32 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|.|+|+|++|+|||||+.+|....+.... ..++..++.+++... .....|.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 56999999999999999999877554322 222333332222110 112359999999999999998
Q ss_pred Hhccccc-ceeEEEeeccCCC--CHHHHHHHHHH----H--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000626 875 SRGSGLC-DIAILVVDIMHGL--EPQTIESLNLL----K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 875 ~rg~~~a-DiaILVVDa~~Gv--~~QT~E~l~ll----k--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
..++..+ +++|||||+.+.. ...+.++|..+ . ..++|+|||+||+|+... .+...+...|......++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a---~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA---KPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc---CCHHHHHHHHHHHHHHHH
Confidence 8889998 9999999998852 12333443221 1 147999999999998632 122223333332222221
Q ss_pred HHHHHHHHHHHHHHHH---c-CCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHH
Q 000626 946 NEFNMRLVQIVTQLKE---Q-GMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 1000 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~---~-Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~ 1000 (1384)
......+..+...-.. . |.... .+.-..+...+.|+.+|+..+. ||..+..||.
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~~~-~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKGGK-SFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHhccccccccccccccccccccCc-ceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 1111000000000000 0 00000 0111223468899999999877 6888877764
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-15 Score=154.49 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=93.1
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-------h
Q 000626 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-------T 871 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-------~ 871 (1384)
|+|++|+|||||+++|.+..+......+.|.......+.+.. ...++||||||+... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 589999999999999998765333344444433222221110 245899999997432 2
Q ss_pred HHHHhcccccceeEEEeeccCCC------CHHHHH-HHHHHH----------hcCCceEEEEeecccccCcccCCCchHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGL------EPQTIE-SLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv------~~QT~E-~l~llk----------~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....+.+..+|++|+|+|+.+.. ...... ++..+. ..++|+|||+||+|+... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 138 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EEL- 138 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hHH-
Confidence 22344567799999999998863 222222 222222 147899999999998621 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......... .....+++++||++|.||.+|+.+|+.+
T Consensus 139 ------------------~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 139 ------------------EEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000000 1123579999999999999999988643
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=179.33 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=104.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
.+.|+|+|++++|||||+++|++..+. .....|+|.++....+.+. ...++||||||+..|..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 356999999999999999999986542 3444566655433322222 23489999999877643
Q ss_pred H--------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 873 ~--------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
. ....+..+|++|+|||++++...+....|.. ..++|+|+|+||+|+... ..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~------~~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGE------ID------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcccc------ch------------
Confidence 2 2235778999999999999877666655554 457899999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+. . ....++|+|||++|.||..|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=172.37 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=99.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
-|.|+|+|.+|+|||||+++|++..+......+.|.+.....+.+. ....++||||||+..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCH
Confidence 3779999999999999999999876543333344433221111111 112588999999743
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHH----HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|... ...+..+|++|+|+|+++....... ..+..+...++|+|+|+||||++..+ .
T Consensus 262 ~lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~--------~------ 326 (426)
T PRK11058 262 DLVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF--------E------ 326 (426)
T ss_pred HHHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch--------h------
Confidence 4332 3456789999999999986544333 23444444579999999999986210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.. + . ....++ ..+|+|||++|.||.+|+.+|...+.
T Consensus 327 ---------~~---~-~-~~~~~~--------------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 ---------PR---I-D-RDEENK--------------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---------HH---H-H-HHhcCC--------------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 00 0 0 001111 12588999999999999999987664
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=160.02 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|||..++|||||+.+|++..+.....++|...+.. .+.... ....|.||||||++.|..+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~--------------~~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEE--------------QRVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 3468999999999999999999877665444443222110 111110 0124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHH-H-HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQT-I-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT-~-E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+..+++.+|++|||+|+++.-..+. . .++..+.. .++|+|||.||+|+... ......+..+....
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~~~----- 146 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQAP----- 146 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccCCc-----
Confidence 9999999999999999987544443 1 22334432 36899999999998521 00000110000000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1384)
.............| ..+++.|||+||. ||.++|..|+..+
T Consensus 147 Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 147 ISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 00011111122221 1268999999998 8999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-15 Score=155.76 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
..|+|+|..|+|||||+.+|++..+. ....+.+...+....+.+... ...+.||||+|...|..+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~--------------~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ--------------EKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe--------------EEEEEEEecCCccccccc
Confidence 34899999999999999999987765 444343332222111211110 023889999999999988
Q ss_pred HHhcccccceeEEEeeccCCCCHHHH-HHHHHHH-hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
+..++..||++|||+|+++.-..+.. .++..+. ..++|+|||+||+|+..... ... . .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-----~~~----~-----------~ 130 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-----RYE----V-----------Q 130 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc-----ccc----c-----------C
Confidence 88889999999999999774222221 2233332 23699999999999852110 000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ ....++ ..++++||++|.||.+|+..|+..+
T Consensus 131 ~~~~---~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 131 PDEF---CRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHHH---HHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 0001 111111 1458999999999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-15 Score=153.84 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+...|++||..++|||||+-++....+.... ..+||+.|+.-.... . -....|.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~----e~TIGaaF~tktv~~--------~--~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI----EPTIGAAFLTKTVTV--------D--DNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc----ccccccEEEEEEEEe--------C--CcEEEEEEEEcCCccccc
Confidence 45567999999999999999999988877653 345676665422100 0 011348899999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHHhcC---CceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMRN---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~---vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+...+++.+++||||+|+++--..++...| ..|+... +-+.+|.||+|+... +.-.
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V~--------------- 129 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REVE--------------- 129 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----cccc---------------
Confidence 9999999999999999999986555555444 4554433 345569999999620 1111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
..........+| ..|+.+||+||.||.++|..|...++.
T Consensus 130 ----~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 130 ----FEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ----HHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhccC
Confidence 112222222233 489999999999999999998876643
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=168.71 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
-|+|||.+++||||||++|+.........++.| .++|...+.. ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-----------------~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-----------------GRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-----------------ceEEEEEeCCCcccCCcc
Confidence 399999999999999999987653322222223 3344332211 13589999999742
Q ss_pred ---hhHHHHhcccccceeEEEeeccCC---CCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHH
Q 000626 870 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+.....+.+..||++|+|||+++. -..+....| +.+.. .+.|+|||+||||++.. .. +
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----~ 291 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----L 291 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH----H
Confidence 233445566779999999999864 122333333 22332 36899999999998621 00 0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... + .+++|+|||++|+||.+|+.+|..++
T Consensus 292 ---------------~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 292 ---------------AELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ---------------HHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 1111122111 0 14799999999999999999987643
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=147.49 Aligned_cols=153 Identities=25% Similarity=0.357 Sum_probs=100.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|+|+|++|+|||||++.|.+.... .....+.|..+.. +... ..++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-----------------CeEEEecCCCccccccCH
Confidence 799999999999999999953322 1112223322211 1111 1589999999754
Q ss_pred -----hhHHHHhcc---cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000626 870 -----FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 -----F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
|..++..++ ..++++++|+|+.+..+......++.+...++|+++++||+|+... .-.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-------~~~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-------SEL------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-------HHH-------
Confidence 333333333 3467899999999888888888888888889999999999998621 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+...+.. +...++++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~-------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKL-------------FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHh-------------ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 0000111111211 0134689999999999999999998754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-14 Score=169.16 Aligned_cols=88 Identities=35% Similarity=0.447 Sum_probs=59.5
Q ss_pred chhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchhh
Q 000626 507 EKKMSKQVREMQEALAR-RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE-KLLKKKQEGKLLTGK 584 (1384)
Q Consensus 507 ~~~~~~~~~~~~e~~~~-~~~~ee~~~~eEEE~~~~eeEe~~~~eeeer~~~e~~~~k~~~~ke-k~~~~k~e~~~~~~k 584 (1384)
...+++++.++++++++ .+++||+.|+++||+++++++|++..|..+++++.+++++++++.+ ++++.+|++ .
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~-----~ 290 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKE-----E 290 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHH-----H
Confidence 45666776666666655 5566777777777777777777777777777777777777777777 788877776 3
Q ss_pred HHHHHHHHHHHHHHH
Q 000626 585 QKEEARRLEAMRNQF 599 (1384)
Q Consensus 585 ~~~~~~~~~~~~~~~ 599 (1384)
++...+++.+++.+.
T Consensus 291 ~a~aea~l~~ll~sg 305 (1064)
T KOG1144|consen 291 AALAEAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHHHHHhcC
Confidence 444444455555544
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=155.44 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=107.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|..++||||||.+|....+.. +...+|..... ..+....++|||.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEeccccccccc
Confidence 34569999999999999999998654332 11222221111 012223599999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|+|||+++.- .....+.|..+.. .++|++|++||+|+... .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch---------------
Confidence 9999999999999999998732 2445555544332 46899999999998631 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...|....+. ....+.+++|||.+|+||.+.++||...
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11122222111111 1356899999999999999999998753
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-15 Score=152.72 Aligned_cols=160 Identities=21% Similarity=0.222 Sum_probs=114.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+|||||||++++.+..+....... ||+.++.-+... + -....|.||||.|++.|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~V--------d--~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQV--------D--DRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEE--------c--CeEEEEEEEecccHHHhhhcc
Confidence 45999999999999999999987765444333 444444322110 0 001248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH--HHHhc------CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~~------~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...++.+|+++||+|.++.-...+++.|+ +|... ..||||+.||+|+..+- .+-.
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--~r~V--------------- 138 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--SRQV--------------- 138 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--ccee---------------
Confidence 99999999999999999877777777774 44433 25999999999985320 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......+.... +++|++.+||+.+.||.+.|..+.+.+
T Consensus 139 ----S~~~Aq~WC~s~--------------gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 139 ----SEKKAQTWCKSK--------------GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ----eHHHHHHHHHhc--------------CCceeEEecccccccHHHHHHHHHHHH
Confidence 012233344443 468999999999999999998887654
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=170.10 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=98.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-------
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------- 869 (1384)
|+|||.+++||||||++|+.........++.|.......+.+.. ...|+|+||||...
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchhh
Confidence 99999999999999999997665444444444333222222110 12499999999532
Q ss_pred hhHHHHhcccccceeEEEeeccC----CCCHHHHHHHHHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~----Gv~~QT~E~l~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
+...+.+.+..||++|+|||++. ....+....++.+.. .+.|+|||+||+|++.. ..+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------~el------- 293 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------EEA------- 293 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------HHH-------
Confidence 23334467888999999999872 122222333344444 35899999999998620 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+... ++...++|+|||++|.||.+|+..|..+++
T Consensus 294 ------------~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 294 ------------EERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------HHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 0111111111 011236899999999999999999987664
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=150.38 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=114.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|+|..|+|||+|+-+|....+......+|..++..-.+..+... -.|.||||.|++.|..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhhh
Confidence 3458999999999999999999988887776666666554444443211 24999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+..+++.|+++|||+|++.--..+.+..| ..+. ..++|.++|.||+|+...|.-. .
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~----~---------------- 134 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS----T---------------- 134 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC----H----------------
Confidence 99999999999999999884443333333 2232 3468999999999996432100 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCcee-EEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~-iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.........+ ..| ++++||+.+.||.+.|..|...+...+
T Consensus 135 ---~~a~~fa~~~---------------~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 135 ---EEAQEFADEL---------------GIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ---HHHHHHHHhc---------------CCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 0011111111 134 999999999999999988876554433
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=172.69 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
-|+|||.+++||||||++|.+........+++|.......+.+. ...|+||||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~----------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG----------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC----------------CeEEEEEECCCCccccchhh
Confidence 49999999999999999998765443444444443322222211 13499999999532
Q ss_pred -hhHHHHhcccccceeEEEeeccCC---CCH-HHHHHH-----HHH----------HhcCCceEEEEeecccccCcccCC
Q 000626 870 -FTNLRSRGSGLCDIAILVVDIMHG---LEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G---v~~-QT~E~l-----~ll----------k~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
......+.+..||++|+|||+++. ..+ ..+..| .++ ...+.|+|||+||||++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 112234567789999999999741 111 122222 122 2246899999999998521
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
.. + ...+...+... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~e----l--------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -RE----L--------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HH----H--------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0 00111122221 2489999999999999999999877654
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=148.76 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.++|||..|+|||+||-+++...++.-...+|..+.|+..+..+... -.|+||||.||+.|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 37899999999999999999888887766777778887777654321 2499999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+-+||||+|++..-...-+.+| .-++ ..|+-|+++.||+||... + . +.
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r----R--~-----------Vs------ 130 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR----R--E-----------VS------ 130 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc----c--c-----------cc------
Confidence 999999999999999875444444433 2223 356889999999999621 1 1 11
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
-.+.-.+..++|| .++.+||+|++||.+.|..+...+
T Consensus 131 ~EEGeaFA~ehgL---------------ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 131 KEEGEAFAREHGL---------------IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHcCc---------------eeehhhhhhhhhHHHHHHHHHHHH
Confidence 1122234445554 677999999999999887765433
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=158.50 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++||||||.+|.+..+.....+++...+.. .+.++. ....|.||||+|+..|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~~--------------~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEIDK--------------RRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEECC--------------EEEEEEEEeCCCcHHHHHHhH
Confidence 48999999999999999999877665444443322211 111111 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-HHHH-HHHh--cCCceEEEEeecccc
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLN-LLKM--RNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~-llk~--~~vP~IVaINKiDl~ 922 (1384)
.++..+|++|||+|+++.-..+.. ..|. .+.. .++|+|||.||+|+.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 999999999999999875333332 2232 2222 468999999999985
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-14 Score=147.73 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=118.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
..+|...|+|||..++|||||+.++++..+......+|..++-...+.+.... ..|.||||.|++.
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~--------------vrLQlWDTAGQER 83 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------VRLQLWDTAGQER 83 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE--------------EEEEEEecccHHH
Confidence 44565679999999999999999999999987776666666544444332211 2599999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhc-C---CceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMR-N---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~-~---vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|..+...+++.+.+||+|+|.++- ...+|..+|.-++.. + +-+++|.||.||... +...
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---------rqvs------- 147 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---------RQVS------- 147 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---------hhhh-------
Confidence 999999999999999999999874 446677777766543 2 456679999999731 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+ ..--....++ .+-|+.+||++|+||..||..|...++.
T Consensus 148 ~-------eEg~~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 148 I-------EEGERKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred H-------HHHHHHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 0 0000111111 2478999999999999999888766554
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=168.29 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
-|+|||.+++||||||++|++........+++|.......+.+. ....|+||||||...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---------------~~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---------------DGRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---------------CCceEEEEECCCCcccccccc
Confidence 49999999999999999999765433333444433322222111 013599999999632
Q ss_pred -hhHHHHhcccccceeEEEeeccCC--CCH-HHHHH-HHHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHH
Q 000626 870 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G--v~~-QT~E~-l~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
+.....+.+..|+++|+|||+++. ..+ +.... +..|.. .+.|+|||+||||+.. .. .
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~--e---- 291 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE--E---- 291 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH--H----
Confidence 223344566779999999999753 122 22332 334433 3689999999999741 10 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 940 q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+..+...+ + .++|+|||++|+||.+|+.+|..++.
T Consensus 292 -----------~l~~l~~~l----------------~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 292 -----------NLEEFKEKL----------------G--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred -----------HHHHHHHHh----------------C--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011111111 1 47999999999999999999876654
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=147.19 Aligned_cols=135 Identities=27% Similarity=0.348 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----CcchhH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----He~F~~ 872 (1384)
|.|||.+++|||||+.+|.+...... -||.+. + .=.+||||| +..|..
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~--~----------------------~~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIE--Y----------------------YDNTIDTPGEYIENPRFYH 55 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcC----ccceeE--e----------------------cccEEECChhheeCHHHHH
Confidence 89999999999999999987654322 244332 1 024799999 566766
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.....+..||+++||+|++.... ...-.++...+.|+|=||||+|+..+ . ..+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~-----~-------------------~~i 108 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD-----D-------------------ANI 108 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc-----h-------------------hhH
Confidence 66777788999999999987532 12223455667899999999999621 1 223
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.....+|...|+. .+|+||+++|+||.+|..+|.
T Consensus 109 ~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 109 ERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHHh
Confidence 4455667777653 569999999999999988763
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-14 Score=156.38 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|+|..|+|||||+.+|+...+. ......+..++....+.+.. ....|+||||||+..|. +
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~--~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMWT--E 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchHH--H
Confidence 4899999999999999999866553 11111111111111111111 11348999999998443 3
Q ss_pred Hhccc-ccceeEEEeeccCCCCHHHH-HHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 875 SRGSG-LCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 875 ~rg~~-~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
...+. .+|++|||+|+++.-..... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------~~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS------REVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc------ceec--------------
Confidence 34455 89999999999885332222 22333333 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.... ..+... ..+++++|||++|.||.+|+.+|+..+
T Consensus 126 ---~~~~-~~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 126 ---VQEG-RACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ---HHHH-HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 011110 124789999999999999999987655
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=142.12 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=100.0
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcc
Q 000626 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~ 878 (1384)
|+|++++|||||+++|.+..............+....+... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 58999999999999999776521111111112211111110 0113589999999999988888889
Q ss_pred cccceeEEEeeccCCCCHHHHHHH-----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000626 879 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
..+|++|+|+|++++....+...+ ......++|+||++||+|+... ......
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~-------~~~~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE-------RVVSEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc-------cchHHH----------------
Confidence 999999999999987666655544 3334567999999999998621 100000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00011111 1346899999999999999998874
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=169.83 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=103.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
+.|+|+|++|+|||||+++|++... .....+|+|.++....+.+. ...++||||||+..+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~----------------g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN----------------GILIKLLDTAGIREHADF 267 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC----------------CEEEEEeeCCCcccchhH
Confidence 4599999999999999999997643 23445666766443333222 234899999998665432
Q ss_pred --------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000626 874 --------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 874 --------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
...++..+|++|||+|++++...+.. +|..+...++|+|||+||+|+.. .+.
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~-------~~~------------ 327 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI-------NSL------------ 327 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC-------cch------------
Confidence 23567889999999999988776665 56666667899999999999852 000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
. .+... ..+++|+|||++ .||.+++..|...+.
T Consensus 328 -------~----~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -------E----FFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -------h----hhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 01000 013688999998 599999988876543
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=148.91 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.|+|||||+++|....+.....+.+...+.. .+.... ....+++|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDG--------------KPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECC--------------EEEEEEEEECCCChhccccch
Confidence 48999999999999999998665543222222111110 000000 012488999999999987777
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|+|+|+++.-..+... ++..++. ..+|+|||+||+|+...- .. ...... ..+..
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~----~~-~~~~~~-------~~~~~- 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA----VA-KEEYRT-------QRFVP- 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc----cc-cccccc-------CCcCC-
Confidence 7788999999999997643333332 2333332 369999999999985310 00 000000 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
........... +.+++|.|||++|.||.+++.+|...
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 00011111111 23479999999999999999998753
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=148.22 Aligned_cols=161 Identities=20% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+++|.+++|||+||.+|....+.......|.+++-...+..+.. .-.+.+|||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~--------------~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK--------------KIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe--------------EEEEEEEEcccchhHHH
Confidence 3345999999999999999999987776555444444433332222221 12499999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...+++.|+++|||+|+++......+..| ..+. ..++|+|+|.||+|+... +. +..+.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e~ 139 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKER 139 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHHH
Confidence 999999999999999999875443333322 3333 247999999999998520 10 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+ -....++| ++|+.|||++|.||.+.+..|...+..
T Consensus 140 g------e~lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 G------EALAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred H------HHHHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 1 11222333 589999999999999998888765543
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=151.55 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
....|+|+|+.|+|||||+.+++...+......++...+....+.... ....|.+|||||+..|..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~i~i~~~Dt~g~~~~~~ 73 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC--------------GPICFNVWDTAGQEKFGG 73 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCchhhhh
Confidence 335699999999999999998876655433333332222222211110 012489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHH-HHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++...+..++++|+|+|+++....++...|. .+. ..++|+++++||+|+... ...
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-----~~~----------------- 131 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-----QVK----------------- 131 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-----cCC-----------------
Confidence 9988889999999999998866655554442 221 246899999999998521 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.. ..+.++++||++|.||..++.+|...
T Consensus 132 ---~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 132 ---ARQITFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred ---HHHHHHHHH---------------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 000111111 12478999999999999988887654
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-14 Score=153.73 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=116.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc---------------------------------------cccccCceeE
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV---------------------------------------QEGEAGGITQ 829 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v---------------------------------------~~ge~gGITq 829 (1384)
...-|+++|+|+|..|+||||++.+|..... .-|..|||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 3445677899999999999999999963221 1223344443
Q ss_pred eeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-cchhHHH-------HhcccccceeEEEeeccCCCCHHHHH-
Q 000626 830 QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIE- 900 (1384)
Q Consensus 830 ~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH-e~F~~~r-------~rg~~~aDiaILVVDa~~Gv~~QT~E- 900 (1384)
.+..+...++........ .-....+.||||||+ +.|+-.. ....+..-++++|||......|.|.-
T Consensus 94 sLNLF~tk~dqv~~~iek-----~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS 168 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEK-----RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS 168 (366)
T ss_pred hHHHHHHHHHHHHHHHHH-----hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH
Confidence 332222111100000000 001135899999996 4453111 12233456789999987766666553
Q ss_pred ----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCC
Q 000626 901 ----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDR 975 (1384)
Q Consensus 901 ----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~-~i~~I~~~L~~~Gl~~e~~~~~~d~ 975 (1384)
...+|....+|+|||+||+|+. ...|...+..-.+..+..+.. .-.-+...+....|..+-||
T Consensus 169 NMlYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY----- 236 (366)
T KOG1532|consen 169 NMLYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY----- 236 (366)
T ss_pred HHHHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-----
Confidence 3456677889999999999996 456665555444433333332 11112222222233334444
Q ss_pred CCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000626 976 GETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 976 g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
..+.+|.||++||.|++++|..+...+..+
T Consensus 237 -~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 237 -RSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred -hhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 346899999999999999998887665443
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=142.98 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=104.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+.+|.+..+.......+..+.....+..... ...|.||||||+..|..++..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK--------------PVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE--------------EEEEEEEEETTSGGGHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc--------------ccccccccccccccccccccc
Confidence 899999999999999999987766544443322222222222110 124899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.+..+|++|||+|.++.-.......| ..+. ..++|+||+.||.|+...+ ..+.
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~~------------------- 124 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVSV------------------- 124 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSCH-------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccccc----cchh-------------------
Confidence 99999999999999874322222222 2222 2358999999999986311 1110
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+......+ + ++++.+||++|.||.++|..|+..+
T Consensus 125 ~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 125 EEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111122222 1 6999999999999999998887644
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-14 Score=166.46 Aligned_cols=237 Identities=19% Similarity=0.293 Sum_probs=147.8
Q ss_pred CCccCCCCccccccCCCCEE-EEEcCCCCCHHHHHHHHHcC--ccc-ccccCceeEeeeeeEecccccccchhhcccccc
Q 000626 778 EPEVDATPKQAEENLRSPIC-CIMGHVDTGKTKLLDCIRGT--NVQ-EGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 778 ~r~~sa~a~~s~~~~R~piV-~IlGhvdsGKTTLLd~L~~t--~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
...+.+...+.+....+|+| +|||++|+|||||+..|... ... ..-.|.||.-.|
T Consensus 52 kklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg--------------------- 110 (1077)
T COG5192 52 KKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG--------------------- 110 (1077)
T ss_pred hccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec---------------------
Confidence 44556667778888777765 59999999999999998632 111 111233333222
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEE-EEeecccccCcccCCCch
Q 000626 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiDl~~~w~~~~~a~ 932 (1384)
+.+.|+|+.||. + .+.+...+..+|++||+||++-|+...|.++|++|..+|.|.|+ |+|.+|+.. +.+
T Consensus 111 -K~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk------~~s 180 (1077)
T COG5192 111 -KTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK------NPS 180 (1077)
T ss_pred -ceeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc------ChH
Confidence 124599999993 3 44555678899999999999999999999999999999999776 899999862 222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhH-HHHHHHHHHHHHHHhh
Q 000626 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL-LLLLVQWTQKTMVEKL 1011 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL-l~~L~~~~~~~l~e~l 1011 (1384)
+|.....++..+|+..+++- .-+|.+|.+.+--.++- +-.|..++.-.-...|
T Consensus 181 ---tLr~~KKrlkhRfWtEiyqG-----------------------aKlFylsgV~nGRYpDreilnLsRfisVMKfRPl 234 (1077)
T COG5192 181 ---TLRSIKKRLKHRFWTEIYQG-----------------------AKLFYLSGVENGRYPDREILNLSRFISVMKFRPL 234 (1077)
T ss_pred ---HHHHHHHHHhhhHHHHHcCC-----------------------ceEEEecccccCCCCCHHHHHHHHHHhhhccccc
Confidence 34444456666665543322 24455555433222221 1112222211111111
Q ss_pred hccc-----------ccceE-EEEEEEEcCcceEEEEEEEe-eeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000626 1012 TFRN-----------ELQCT-VLEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1012 ~~~~-----------~~~~~-VlEvk~~~G~G~vi~~iV~~-G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.+.+ .+..+ .++-...-|+-.+++|.|.. |..+....|+|+|.+...+..|..|.+|+|.
T Consensus 235 ~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp 307 (1077)
T COG5192 235 EWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPP 307 (1077)
T ss_pred ccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCC
Confidence 1111 11111 11111223556678888875 5556666799999998889999999999983
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=173.25 Aligned_cols=146 Identities=25% Similarity=0.294 Sum_probs=103.1
Q ss_pred cCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH------H
Q 000626 801 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 874 (1384)
Q Consensus 801 GhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~------r 874 (1384)
|.+|+|||||+++|++.++..+..+|+|.+.....+.+.. ..++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~----------------~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG----------------EDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC----------------eEEEEEECCCccccCccchHHHHH
Confidence 8899999999999998887777788888776544443321 34899999999988643 2
Q ss_pred Hhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 875 SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 875 ~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
... ...+|++|+|+|+++. ......+..+...++|+|||+||+|+... ..+. ..
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~---------------~d- 120 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGIR---------------ID- 120 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCCh---------------hh-
Confidence 222 2468999999999872 23445555666788999999999998521 0000 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+... + .+++++|||++|.||++|++.+....
T Consensus 121 ---~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 ---EEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---HHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111111 1 25899999999999999999987653
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=142.38 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeE--ecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY--FPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~--~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.|+|+|+.++|||||+.+++...+.....+ ..+.+. +.+.. ....+.||||+|...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~----~~~~~~~~i~~~~--------------~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP----EGGRFKKEVLVDG--------------QSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC----CccceEEEEEECC--------------EEEEEEEEECCCCCch---
Confidence 489999999999999999987655432111 011111 11110 0124899999999753
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHH-HHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+.+..+|++|||+|.++.-..+.... +..+.. .++|+|||.||+|+... +...+ ..
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~-- 121 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DD-- 121 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CH--
Confidence 34567899999999998665555433 333332 35899999999997410 00000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.....|... ...++|++|||++|.||.++|..++.
T Consensus 122 -----~~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 122 -----ARARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred -----HHHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 001112211 02368999999999999999988764
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=146.59 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=80.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
.....+.+|+|+|++|+|||||++.|+..... ..++...|.+++. ......|+|+||||+.
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~----~~~~~~~g~i~i~---------------~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTK----QNISDIKGPITVV---------------TGKKRRLTFIECPNDI 94 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhccc----CccccccccEEEE---------------ecCCceEEEEeCCchH
Confidence 33445567999999999999999999754211 0011111111110 0112459999999974
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEE-EEeecccc
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 922 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiDl~ 922 (1384)
..+...+..+|++|||+|+..|+..++..+|..+...++|.+| |+||+|++
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 3334557889999999999999999999999999999999655 99999986
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=141.45 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHH-HHHcCccccccc-CceeEeeee---eEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 796 ICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd-~L~~t~v~~ge~-gGITq~iga---~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.|+|+|+.++|||||+. ++.+..+..+.. ......+|. +.............+ .-....|.||||+|+..+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~----~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV----DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee----CCEEEEEEEEeCCCChhh
Confidence 59999999999999996 554433321110 111112221 000000000000000 001135999999998763
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccc
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~ 922 (1384)
++..+++.+|++|||+|+++....+... ++..++. .++|+|||+||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556788999999999998755444442 2333433 368999999999985
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=138.69 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh---
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~--- 871 (1384)
+.|+|+|++|+|||||+++|++...... +.++. +....+.... .+.. -..+.++||||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~~-----~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKRT-----PYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCce-----eeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999997543211 11111 1000000000 0000 012469999999975321
Q ss_pred --HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHH-hhHHHHHHH
Q 000626 872 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ-QNTDVQNEF 948 (1384)
Q Consensus 872 --~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~-q~~~v~~ef 948 (1384)
.++..++..+|++|||.+ ..+......++..++..+.|+|||+||+|+.. ++... ..... ....+...+
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~-~~~~~~~~~~~l~~i 141 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQR-SKPRSFNREQVLQEI 141 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhc-cccccccHHHHHHHH
Confidence 133445677899888754 45777777788888888999999999999841 11100 00000 000111111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc--CCCChhhHHHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~--tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+...+...|+ ...+|+.+|+. .+.|++.|...|...++.
T Consensus 142 ---~~~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 142 ---RDNCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred ---HHHHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1223333333332 23589999999 789999999988877664
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=160.96 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~- 873 (1384)
..|+++|++|+|||||+|+|++.+...+..+|+|...-.-.+.+. .+.|+|+|+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~----------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK----------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec----------------CceEEEEeCCCcCCCCCCC
Confidence 459999999999999999999999999999999987655444433 245999999997776432
Q ss_pred -----HHhcc--cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 874 -----RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 874 -----r~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..+++ ..+|++|.||||++ + ......--+|...++|+|+++|.+|..... +-
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-L-eRnLyltlQLlE~g~p~ilaLNm~D~A~~~----Gi--------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-L-ERNLYLTLQLLELGIPMILALNMIDEAKKR----GI--------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-H-HHHHHHHHHHHHcCCCeEEEeccHhhHHhc----CC---------------
Confidence 22222 34799999999976 2 233334456677899999999999974110 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
......+. .. + .+|+||+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~---~~-------------L--GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLS---KL-------------L--GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHH---HH-------------h--CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 00001111 11 1 279999999999999999998876543
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=144.62 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=55.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F----- 870 (1384)
.|+|+|++++|||||+++|++.....+...+.|.......+. +....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~----------------~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLE----------------YKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEE----------------ECCeEEEEEECCCcccccccch
Confidence 489999999999999999997754433333333222111111 12235899999997532
Q ss_pred --hHHHHhcccccceeEEEeeccCC
Q 000626 871 --TNLRSRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 871 --~~~r~rg~~~aDiaILVVDa~~G 893 (1384)
...+...++.+|++|+|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 23445678899999999998753
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=131.78 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=109.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
++|+|+.|+|||+||.++....+.+.....|...+|.-.+.+.. +.-.|.||||.|++.|......
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtRs 77 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTRS 77 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHHH
Confidence 78999999999999999998877766555666666655544432 1135999999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-+++||+|++..-....+..| +.+...++-+|+|.||-|+... +...|.
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vtfl------------------ 135 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVTFL------------------ 135 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhhHH------------------
Confidence 99999999999999875544444444 3444456778889999998521 111111
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
+...+.. ...+.++.+||+||+|+.+.|-....
T Consensus 136 -EAs~Faq---------------Enel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 136 -EASRFAQ---------------ENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -HHHhhhc---------------ccceeeeeecccccccHHHHHHHHHH
Confidence 0111111 12357899999999999988766543
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=131.29 Aligned_cols=165 Identities=19% Similarity=0.143 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.+.|||+..+||||||-+.+...++....+.+..+.-+-.+-... +-..+.||||.|++.|..+..
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~--------------kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD--------------KRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc--------------cEEEEEEEecccchhhhHHHH
Confidence 489999999999999999998877654433333332211111110 012499999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.++++||++|+++.-.....+.|- ++ .-.+.|+|+|.||||+-.. +--+
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----Rvis------------------- 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----RVIS------------------- 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----eeee-------------------
Confidence 9999999999999998754444444432 22 3357999999999998521 1100
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~ 1012 (1384)
.........+.|| .+|.+||+.+.|+.+++..|+..+...|.+.+.
T Consensus 146 ~e~g~~l~~~LGf---------------efFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLGF---------------EFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhCh---------------HHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 1122233333343 689999999999999999999888888877553
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=155.34 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~- 873 (1384)
.|+|+|.||+|||||||+|++.... ....+|+|.++--.++..+ +..+.|+||.|...-...
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~----------------G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN----------------GIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC----------------CEEEEEEecCCcccCccHH
Confidence 4899999999999999999987643 3445667776644444433 345999999995432221
Q ss_pred ------H-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 874 ------R-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 874 ------r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
| ...+..||+++||+|+++++..+....+. +...+.|+|+|+||+|+...|..
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------------- 342 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------------- 342 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc-------------------
Confidence 2 23466799999999999987777777766 55667899999999999743210
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
. .+ . +....+++++||+||+||..|...|..++.
T Consensus 343 ------~----~~-~-------------~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 ------E----SE-K-------------LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ------c----hh-h-------------ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 00 0 012348999999999999999998876654
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=154.98 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCEEEEeCCCCcc-----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC--CceEEEEeecccccCcccCC
Q 000626 857 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 857 ~~i~~IDTPGHe~-----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~IVaINKiDl~~~w~~~~ 929 (1384)
.+|.||||||... +..++...+..+|++|||||+..++.+.....++.++..+ .|+|+|+||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr----- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR----- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc-----
Confidence 4699999999432 4445667899999999999999988888888889898877 599999999998621
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 930 NAPIVKAIKQQNTDVQNEFNMRLVQIV-TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~-~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+.... +...+ ..|...++ .+..||||||++|.|+..|+..|..
T Consensus 305 eeddkE~---------------Lle~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQ---------------VRALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHH---------------HHHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 1111111 11111 12222221 2357999999999999999998865
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=132.51 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|.|+|..|+||||||-+|....+.......|..++-..++.+...+ ..+.||||+|++.|..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhhcc
Confidence 4559999999999999999999888877666556555554444443322 35999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
...+++.+-++|||+|.+..-..-.+.+|. .+.. .++-.++|.||||.... +-.+
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~----R~V~---------------- 136 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE----RVVD---------------- 136 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc----cccc----------------
Confidence 999999999999999998754444444442 2222 34567789999997411 1000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+ .+-+.+...+ .+-|+.+||+|.+|+...|..|+..+
T Consensus 137 --r-eEG~kfAr~h---------------~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 137 --R-EEGLKFARKH---------------RCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred --H-HHHHHHHHhh---------------CcEEEEcchhhhccHHHHHHHHHHHH
Confidence 0 0111122222 36799999999999999988876543
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=128.19 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|+.|+|||+|+.+++.+-++.|....|..++-.-.+.++.. ...+.||||.|++.|.+...
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge--------------kiklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE--------------KIKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe--------------EEEEEEeeccchHHHHHHHH
Confidence 3899999999999999999988887665433332221111111110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCC----HHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~----~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.++.+|||+|++.... |..+.-|......++--|+|.||+|+... + .+
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr---------r--------ev------- 130 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR---------R--------EV------- 130 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh---------h--------hh-------
Confidence 99999999999999987544 33333333334456777999999998520 0 01
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+|-..|...- +.-|+.+||+..+|+..|+..|...+
T Consensus 131 p~qigeefs~~q--------------dmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 131 PQQIGEEFSEAQ--------------DMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hHHHHHHHHHhh--------------hhhhhhhcccchhhHHHHHHHHHHHH
Confidence 112222333221 12467899999999999987775444
|
|
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=122.87 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=67.8
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000626 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
+|+ ++.+.||||+|++|.|++|+.|++ |+++++|.|+|.||++++++|.+|.+|++|||.|.+++ +|.
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~----------d~~ 77 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN----------DIK 77 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc----------cCC
Confidence 554 345789999999999999999997 88999999999999999999999999999999999875 689
Q ss_pred CCCeEEE
Q 000626 1342 IEDELVS 1348 (1384)
Q Consensus 1342 ~~d~l~s 1348 (1384)
.||+|.|
T Consensus 78 ~Gdvi~~ 84 (84)
T cd03692 78 VGDIIEA 84 (84)
T ss_pred CCCEEEC
Confidence 9999864
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=129.31 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
.+|+|.+++|||+|+-+++...++......|..++-.-.++.+..+ -.|.||||.|++.|..+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~--------------VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR--------------VKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 5899999999999999999887775543333333222223322111 24999999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHH-HHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
+++.++++|+|+|.+.|-......- |..++.. .+|-|+|.||.|.+. +.. +. ..
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----Rrv-----V~-------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRV-----VD-------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----cee-----ee-------------hH
Confidence 9999999999999999866554443 3444432 478999999999862 111 00 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....+... ..+.+|.+||+..+|+..+|..|.....
T Consensus 134 dAr~~A~~---------------mgie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 134 DARAFALQ---------------MGIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred HHHHHHHh---------------cCchheehhhhhcccchHHHHHHHHHHH
Confidence 11112222 3368999999999999999988876543
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=138.17 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..|+|||||+.+|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999998887666655554443332221100 1238999999999999999
Q ss_pred HhcccccceeEEEeeccC--CCCHHHHHHHHHHHhc---CCceEEEEeeccccc
Q 000626 875 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~---~vP~IVaINKiDl~~ 923 (1384)
..++..++++|+|+|... ++..-+..++..+... ++|+|++.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999985 3344444444455543 489999999999963
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=136.11 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=113.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+++|.+++|||-||.++....+......+|...++...+..+. +.-..+||||.|++.|......
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccch
Confidence 88999999999999999998887766666665555443333221 1124789999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-+|+||+|++...+.+... +|..|+. .++++++|.||+||..- ... .
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-raV-----------------------~ 138 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-RAV-----------------------P 138 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-ccc-----------------------c
Confidence 999999999999998755444333 3455654 46899999999998520 000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
.+-...+++. ....|+.+||+.+.|+...+..++..+...+..
T Consensus 139 te~~k~~Ae~--------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 139 TEDGKAFAEK--------------EGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred hhhhHhHHHh--------------cCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 1111122221 224899999999999999998777655544433
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=127.71 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=74.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
|+|+|.+++|||||+++|++.+. ..+...+.|.++....+.+. ...+.|+||||...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN----------------NKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET----------------TEEEEEEESSSCSSSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec----------------eeeEEEEeCCCCcccchhhH
Confidence 89999999999999999997543 33444555555522222221 23478999999643
Q ss_pred ---hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEee
Q 000626 870 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
+.....+.+..+|++|+|||+.+....+....++.|+ .+.|+|+|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2223445568899999999988854555666777776 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=127.59 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.|+|..|+|||||+.+|.+.... +|...+|...-. ..++...|+|||..|+..+.+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 3455999999999999999999865421 222222211110 123345699999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++..+|++|+|||.++.. +.++...|..|. ..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999998753 345555555442 36789999999999863210
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+.|...+. + ..+.. ...+++|-|||.||+++..-+.||+.-
T Consensus 135 ----~~~i~~~~~---L--~~l~k----s~~~~l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 135 ----LEEISKALD---L--EELAK----SHHWRLVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred ----HHHHHHhhC---H--HHhcc----ccCceEEEEeccccccHHHHHHHHHHH
Confidence 011111110 0 01111 235699999999999988777777643
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=138.21 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
+-.|.|+|.|++|+|||||+.+|++..+.....+.+| .++|.+...+ ..|++|||||.-+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~------------------~R~QvIDTPGlLD 227 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY------------------LRIQVIDTPGLLD 227 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC------------------ceEEEecCCcccC
Confidence 3445699999999999999999998775544445455 4455443332 2499999999533
Q ss_pred --hh--H----HHHhcc-cccceeEEEeeccC--CCCHHHHH-HHHHHHh-cCCceEEEEeecccccCcccCCCchHHHH
Q 000626 870 --FT--N----LRSRGS-GLCDIAILVVDIMH--GLEPQTIE-SLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 870 --F~--~----~r~rg~-~~aDiaILVVDa~~--Gv~~QT~E-~l~llk~-~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
+. | ....++ .+.+++||++|.+. |....-.. .|..++. .+.|+|+|+||+|..+.|
T Consensus 228 RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e----------- 296 (346)
T COG1084 228 RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE----------- 296 (346)
T ss_pred CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh-----------
Confidence 21 1 111222 34788999999975 44432222 2333332 457999999999986321
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.+..+...+...|. ...+.+|+..+.+++.+...+.......+
T Consensus 297 --------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 297 --------------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred --------------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhhchh
Confidence 22333333433332 23466788889998887777665544433
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=135.46 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+......+|..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999887765444433322221112111000 000012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh----------------------cCCceEEEEeecccc
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----------------------~~vP~IVaINKiDl~ 922 (1384)
..++.+|++|||+|.++.-..+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999986554444444 22221 258999999999986
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=138.71 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCcchhH---HH---Hhcccc--cceeEEEeeccCCCCHHHHHHHHHHH-----hcCCceEEEEeeccccc
Q 000626 857 PGLLVIDTPGHESFTN---LR---SRGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~---~r---~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~llk-----~~~vP~IVaINKiDl~~ 923 (1384)
..+.||||||+..+.. .. .+.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432 21 122222 89999999999988888877665543 56899999999999873
Q ss_pred CcccCCCchHHHHHHHhhH---HHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000626 924 GWKTCRNAPIVKAIKQQNT---DVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 924 ~w~~~~~a~~~~~l~~q~~---~v~~ef~~-------~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
.... ..+..... .+...+.. ....+...+.. ++...++|++||+++.|+.
T Consensus 177 ------~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 ------EEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred ------chhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1111 11111111 11111110 11112222222 2234589999999999999
Q ss_pred hHHHHHHHHH
Q 000626 994 DLLLLLVQWT 1003 (1384)
Q Consensus 994 eLl~~L~~~~ 1003 (1384)
+|+.+|..++
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9999987655
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=135.35 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=115.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~- 869 (1384)
...+.+|.|||.+|+|||||+|+|..+++..-. ++|+..-+.... ...+....++||||||..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345556779999999999999999976654222 222221111100 1123335799999999766
Q ss_pred ------hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh--cCCceEEEEeeccc---ccCcccCCCchHHHHHH
Q 000626 870 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDR---LYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 ------F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~--~~vP~IVaINKiDl---~~~w~~~~~a~~~~~l~ 938 (1384)
+..+....+...|++++++++.+..-.....+|+.+.. ++.|+|++||.+|+ +++|....+.+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~---- 176 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP---- 176 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH----
Confidence 67777778888999999999998777677777776654 34799999999997 3567654333211
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+.+-+..+...+...+. ...|+|.+|+.+++||..|+..|+..++
T Consensus 177 ----a~~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ----AIKQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111111222222222221 2348999999999999999998887654
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=130.13 Aligned_cols=155 Identities=23% Similarity=0.209 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|--++||||+|.+|....+... .++|. ...-.+ .|++..+++||..|+..+..++.
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v----------------~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETV----------------EYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEE----------------EEcceEEEEEecCCCcccccchh
Confidence 489999999999999999976554422 12111 111111 23345699999999999999999
Q ss_pred hcccccceeEEEeeccCCCC-HHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLE-PQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..++++|||||+++... +.+.+ ..+++.. .++|++|+.||.|+++.-
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------- 134 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------- 134 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------------------------
Confidence 99999999999999988421 22333 3344433 468999999999997421
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....|...|....+.. ....|-.++|.+|+|+.+-+++|...+.
T Consensus 135 s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1223444444444432 3347889999999999999999876543
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=140.52 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.....|+|||+.++|||||+.+|++..+......+|...+....+.+.........+... ......|.||||+|++.|.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERYK 97 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhhh
Confidence 444569999999999999999999877654443443333222212211100000000000 0011248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHH-HHHHHhc---------------CCceEEEEeecccc
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---------------NTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---------------~vP~IVaINKiDl~ 922 (1384)
.++..+++.+|++|||+|+++.-....+.. +..+... ++|+|||.||+|+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 999999999999999999987433323322 2333321 48999999999985
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=135.78 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=94.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|.+||.+++||||||++|.... |..+...++..+||.+++..- ..|++-|.||...
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-----------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-----------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-----------------ceeEeccCcccccccccc
Confidence 7899999999999999998654 444555555566774332211 2399999999321
Q ss_pred --hhHHHHhcccccceeEEEeeccCC---CCHHHHHH-HHHHHhc-----CCceEEEEeecccccCcccCCCchHHHHHH
Q 000626 870 --FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIES-LNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~-l~llk~~-----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
.--...|.+-.|++.+||||++.+ -.-|++.. +..|..+ ..|.+||+||||++.+ ..+
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~------ 330 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----EKN------ 330 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----HHH------
Confidence 111223445569999999999887 22233322 2333332 4699999999998521 011
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 331 ------------~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 331 ------------LLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ------------HHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 112222112 1226999999999999999887643
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=123.97 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+++|..=+|||||+-++....|.......+ .+.|.... +.... .--.|+||||.|++.|-.+-
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----QASF~~kk--------~n~ed--~ra~L~IWDTAGQErfHALG 79 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----QASFQNKK--------VNVED--CRADLHIWDTAGQERFHALG 79 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----HHHHhhcc--------ccccc--ceeeeeeeeccchHhhhccC
Confidence 458999999999999999998776654332211 11111100 00000 01259999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH-hcC--CceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MRN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-~~~--vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+++.+|++|||+|+++.-..|-...| ..|+ +++ +.++||.||||+... + .-..+
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R------------~Vt~q---- 139 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R------------QVTRQ---- 139 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h------------hhhHH----
Confidence 9999999999999999998777777665 2332 333 788999999998521 0 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......... ...++.+||+.+.||.+||..|...
T Consensus 140 ---eAe~YAesv---------------GA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 140 ---EAEAYAESV---------------GALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred ---HHHHHHHhh---------------chhheecccccccCHHHHHHHHHHH
Confidence 000011111 1367899999999999999887643
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.7e-11 Score=127.76 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh--
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~-- 871 (1384)
.|+|||++|+|||||+++|++..+.... ..+.|.++......+ ....|+||||||..++.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4999999999999999999987654222 345565544333322 23469999999976552
Q ss_pred -----HHHH----hcccccceeEEEeeccCCCCHHHHHHHHHHHhc-C----CceEEEEeecccc
Q 000626 872 -----NLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRL 922 (1384)
Q Consensus 872 -----~~r~----rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~----vP~IVaINKiDl~ 922 (1384)
..+. .....+|++|||+++.+ +.......+..++.. + .++||++|+.|.+
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 1111 23455799999999988 888888888777653 3 5889999999986
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=139.14 Aligned_cols=153 Identities=25% Similarity=0.319 Sum_probs=98.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccC-CCCEEEEeCCCCc---
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHE--- 868 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~-~~~i~~IDTPGHe--- 868 (1384)
.-|.|+++|.+++|||||+|+|++..+... .++.+|..|+.. ...+. ...++|-||-|+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~------d~LFATLdpttR----------~~~l~~g~~vlLtDTVGFI~~L 254 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA------DQLFATLDPTTR----------RIELGDGRKVLLTDTVGFIRDL 254 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc------ccccccccCcee----------EEEeCCCceEEEecCccCcccC
Confidence 345699999999999999999986554322 233333333211 01111 3469999999953
Q ss_pred ------chhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHH
Q 000626 869 ------SFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 869 ------~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+|.+... -...+|++|+|||+++.. ..|-..+...|.. ..+|+|+|+||||++.+ ..
T Consensus 255 P~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------ 321 (411)
T COG2262 255 PHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------ 321 (411)
T ss_pred ChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh------
Confidence 3444333 466799999999999863 2333334455555 45799999999998732 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+...+.. .. ...|++||++|+||+.|+..|...+..
T Consensus 322 ----------------~~~~~~~--------------~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ----------------ILAELER--------------GS-PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ----------------hhhhhhh--------------cC-CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0001100 01 158999999999999999988776653
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=126.07 Aligned_cols=163 Identities=23% Similarity=0.227 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
..|+|+|.-++||||||.++-.... .-+.. .-||...|...-.. .+....+.|||..|+....
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--------------~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--------------EVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--------------eeccceeEEEEcCChHHHH
Confidence 3489999999999999999863321 11111 12333333221100 1112359999999999999
Q ss_pred HHHHhcccccceeEEEeeccCC--CCH---HHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 872 NLRSRGSGLCDIAILVVDIMHG--LEP---QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~G--v~~---QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
+++..++..|+++|+|||+++. ++. +-...+..=...++|+++.+||-|+.. +- .
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~-----~-------- 143 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AM-----E-------- 143 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hh-----h--------
Confidence 9999999999999999999883 221 112223333446899999999999852 10 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+..+.... + + ...++++|.||||++|+||.+-+.|++..+..
T Consensus 144 --~~El~~~~~~~-e--~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 144 --AAELDGVFGLA-E--L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred --HHHHHHHhhhh-h--h---------cCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 01122222221 1 1 12467899999999999999999998876543
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=129.31 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.|.|+|+|+.|+|||+|+.+|.+........ .+...++ +.+ . .-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t-S~e~n~~-~~~--~-------------~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVT-SMENNIA-YNV--N-------------NSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEE-CCG--S-------------STCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeec-cccCCce-EEe--e-------------cCCCCEEEEEECCCcHHHHH
Confidence 35789999999999999999998764321111 1111111 111 0 01224699999999999876
Q ss_pred HHHh---cccccceeEEEeeccCCCCH---HHHHHHHH-H---H--hcCCceEEEEeecccc
Q 000626 873 LRSR---GSGLCDIAILVVDIMHGLEP---QTIESLNL-L---K--MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 873 ~r~r---g~~~aDiaILVVDa~~Gv~~---QT~E~l~l-l---k--~~~vP~IVaINKiDl~ 922 (1384)
.... ++..+-++|||||+.. +.. .+.++|.. | . ..++|++||+||.|+.
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 5544 3778999999999874 222 23333321 1 1 2468999999999986
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=121.80 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=69.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc----ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~----~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|+|+|+.|+|||||+.+|++.... .....+.+..+....+.... ..+.|||++|+..|..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~~ 65 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR----------------QSLQFWDFGGQEEFYS 65 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE----------------EEEEEEEESSSHCHHC
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc----------------eEEEEEecCccceecc
Confidence 899999999999999999977655 11122222222222221111 1389999999998887
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-------HHHHh--cCCceEEEEeecc
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-------NLLKM--RNTEFIVALNKVD 920 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-------~llk~--~~vP~IVaINKiD 920 (1384)
.....+..+|++|||+|+++. .++..+ ..+.. .++|+|||.||.|
T Consensus 66 ~~~~~~~~~d~~ilv~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 66 QHQFFLKKADAVILVYDLSDP---ESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp TSHHHHHHSCEEEEEEECCGH---HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccchhhcCcEEEEEEcCCCh---HHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 666668889999999999873 333332 22322 3599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=133.92 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=76.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc----------CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~----------gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDT 864 (1384)
..|+|+|+.|+|||||+++|++..+..... ++++.......+..+.. ...|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~--------------~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV--------------KLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE--------------EEEEEEEec
Confidence 469999999999999999999876643321 11111111111111110 024999999
Q ss_pred CCCcchhHH---------------------HH-----hccc--ccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEE
Q 000626 865 PGHESFTNL---------------------RS-----RGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 865 PGHe~F~~~---------------------r~-----rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
||+.++.+. .. ..+. .+|++|++|+++ +++.+..++.++.+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997665331 11 1222 378899999876 5888888999999885 7999999
Q ss_pred Eeecccc
Q 000626 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999986
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-11 Score=117.26 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
..|+|..|+|||+||..+....+.......|...+|.-.+.+.... ..+.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 4789999999999999999887777776667767666555443211 24899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-++++|+|++....-.-+.+|. -++ ..++.++++.||.|+... +... .
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q----rdv~-------------------y 136 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ----RDVT-------------------Y 136 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc----ccCc-------------------H
Confidence 999999999999998754333333331 222 234567889999998521 1111 1
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 998 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~ 998 (1384)
.....+..+.| .-|+.+||+||.|+.+.|..
T Consensus 137 eeak~faeeng---------------l~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 137 EEAKEFAEENG---------------LMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred HHHHHHHhhcC---------------eEEEEecccccCcHHHHHHH
Confidence 12222223333 47899999999999876544
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-11 Score=128.74 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=108.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|..|+|||+|+-++++..+.....+.|-..+ .-.+..+ -....|.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~--------------~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVD--------------GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEEC--------------CEEEEEEEEcCCCcccChH
Confidence 456699999999999999999998877765555443111 0011111 0112488999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-HHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
|+..++..+|+.|||+++++-...+....| .++ + ...+|+|+|.||+|+... +.-+.
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~~-------------- 128 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVSE-------------- 128 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccCH--------------
Confidence 999999999999999999885544433332 222 2 234799999999999631 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
... ..| ... -.++|+.+||....||.++|..|+..+..
T Consensus 129 -----eeg-~~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 129 -----EEG-KAL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred -----HHH-HHH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 000 011 111 13679999999999999999998876543
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-11 Score=134.23 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=65.7
Q ss_pred CEEEEeCCCCcchhHHHHhcc--------cccceeEEEeeccCCCCHHHHHHH-----HHHHhcCCceEEEEeecccccC
Q 000626 858 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 924 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~--------~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiDl~~~ 924 (1384)
.+.|+||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ..+...++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999888766655443 334578899999876566555333 2233468999999999999732
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 925 w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+ ..+.-.+......+...+......+...+... -.+++...+++|+|+.+++|+..|+..|-..+
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 11111111101111111110011111111111 11334444899999999999999998876544
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=118.45 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.+.|+|..-+|||+||..++.+.+..-..++ +|..+|.. -+.+..... ..|.+|||.|++.|.+...
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdpt----vgvdffar------lie~~pg~r---iklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPT----VGVDFFAR------LIELRPGYR---IKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCc----cchHHHHH------HHhcCCCcE---EEEEEeeccchHHHHHHHH
Confidence 3688999999999999999987766444333 33333321 011111111 1489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
.+++.+=+++||+|+++.-...-.+.|- .+.+ .++-|.+|..|+|+... +.-+
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt----------------- 135 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVT----------------- 135 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----cccc-----------------
Confidence 9999999999999998754433333332 1211 23457789999998621 1100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
..+.-...+.+| ..||.+||++|.||.+-+..|.+.+...
T Consensus 136 --~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 136 --AEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred --HHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 011112233334 3799999999999999999887655443
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-11 Score=119.08 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=104.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
++++|..++|||||++.+..+.+... +..+.|+....+.. ..-.|.+||.||+..|..++.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHHH
Confidence 78999999999999998865433211 12233333222211 0124889999999999999999
Q ss_pred cccccceeEEEeeccCC-CCHHHHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHG-LEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~G-v~~QT~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
+.+.++++|+|||+.+. --+-.+.-|. +|. -.++|++|..||+|+... |..
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~------------ 140 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA------------LSK------------ 140 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc------------ccH------------
Confidence 99999999999999872 1233333333 332 247999999999999632 110
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+ +...|+..- ..+.+.++.|||+...||+-+++||+.+.
T Consensus 141 -~~l---i~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 -IAL---IERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred -HHH---HHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 112 223344221 13568999999999999999999998754
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=129.14 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=101.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|.+||.+++||||||.++.... +..+...+++..+|...+... ..|+|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-----------------~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-----------------ESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-----------------CcEEEecCcccccccccC
Confidence 7899999999999999998654 566666666677776665221 3599999999311
Q ss_pred --hhHHHHhcccccceeEEEeeccCCC--C-HHHHHHH-HHHHhc-----CCceEEEEeecccccCcccCCCchHHHHHH
Q 000626 870 --FTNLRSRGSGLCDIAILVVDIMHGL--E-PQTIESL-NLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv--~-~QT~E~l-~llk~~-----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
.--...|.+..|-++|+|||++.-- . .+.+..| ..|..+ +.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 1112234455688999999987422 1 2333333 344443 5799999999997521
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.+.+..+...+.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 011122222232211 1123334999999999999999988876653
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=123.67 Aligned_cols=109 Identities=21% Similarity=0.131 Sum_probs=76.2
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHH-HHHHH-Hh--cCCceEEEEeecccccCcccCCCchH
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll-k~--~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.|.||||||++.|..++..+++.+|++|||+|+++....+... ++..+ .. .++|+|||+||+|+... +....
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVTY 105 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCCH
Confidence 4899999999999999999999999999999998854333332 22222 22 35899999999998521 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......... .+.+++|||++|.||.++|.+|+..++
T Consensus 106 -------------------~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 -------------------EEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred -------------------HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111111111 246899999999999999999886654
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=121.51 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=97.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+-|.++|..|+|||+|+-.|+...+... ...|....+.+.+ ....+++||.|||.....-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r~------------------gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYRL------------------GSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEee------------------cCcceEEEeCCCcHHHHHHH
Confidence 3499999999999999999987643311 1112222222221 12247999999998876555
Q ss_pred Hhccc---ccceeEEEeeccCCCCHH---HHHHH-HHH-----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 875 SRGSG---LCDIAILVVDIMHGLEPQ---TIESL-NLL-----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 875 ~rg~~---~aDiaILVVDa~~Gv~~Q---T~E~l-~ll-----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
.-.+. .+-.+|||||+.. +.+. +-++| ..| ...++|++||+||.|+.. +-..+.+++|++
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t-------Akt~~~Ir~~LE 171 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSAT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT-------AKTAEKIRQQLE 171 (238)
T ss_pred HHHccccccceeEEEEEeccc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh-------cCcHHHHHHHHH
Confidence 54444 6889999999865 2222 22222 122 234589999999999962 222333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhh------h-ccc-----CCC-CceeEEeCCCcCCCChhhHHHHHHH
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELY------Y-KNK-----DRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~------~-~~~-----d~g-~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.-.+.+.. -+..+.. ++.+.+ + ... ++. ..+.|.++|+++| +|.++..||..
T Consensus 172 kEi~~lr~----sRsa~~~--~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 172 KEIHKLRE----SRSALRS--ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred HHHHHHHH----HHhhhhc--cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 11111110 0111101 111111 0 011 122 5789999999999 88888888754
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=131.71 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=60.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhc-cc-----ccccCCCCEEEEeCCCC-
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL-KA-----NATLKVPGLLVIDTPGH- 867 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i-~~-----~~~~~~~~i~~IDTPGH- 867 (1384)
|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+ .. ...+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998765544444444 56676666432111110000 00 00112235999999996
Q ss_pred ---cchhHHHH---hcccccceeEEEeecc
Q 000626 868 ---ESFTNLRS---RGSGLCDIAILVVDIM 891 (1384)
Q Consensus 868 ---e~F~~~r~---rg~~~aDiaILVVDa~ 891 (1384)
..+..+.. ..++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 44554433 4588999999999996
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-11 Score=119.54 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
+..+|..|+||||||-+.+...+...-.. .+|..+-+-...- ++..-.....-.-.++.||||.|++.|.++...
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIs----TVGIDFreKrvvY-~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFIS----TVGIDFREKRVVY-NSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEE----EeecccccceEEE-eccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 46789999999999988775554422111 1121111110000 000000000000125899999999999999999
Q ss_pred cccccceeEEEeeccCCCC-HHHHHHHHHHHhc----CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++.+-+.||++|.+.--. -.++.+|.+|+.+ +--+|++.||+|+.. .+ +..
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---------~R---------~Vs----- 143 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---------QR---------VVS----- 143 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---------hh---------hhh-----
Confidence 9999999999999976332 3345555666553 335788999999862 00 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
-.+.......+| +|+|.+||-||.||....+.|+.++-..|..
T Consensus 144 ~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 112223333344 5999999999999998888887776555544
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-10 Score=126.15 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-cchhHH-
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNL- 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH-e~F~~~- 873 (1384)
.|+++|.+.+||||||++|+++....+.....|...-. ....|+.-.|+|+|+||. +.++.-
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VP----------------G~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVP----------------GMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceeccccc----------------ceEeecCceEEEEcCcccccCcccCC
Confidence 49999999999999999999876544333333322211 123455567999999994 333322
Q ss_pred -----HHhcccccceeEEEeeccC
Q 000626 874 -----RSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 874 -----r~rg~~~aDiaILVVDa~~ 892 (1384)
....++.||++|+|+|+..
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCC
Confidence 3344678999999999874
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-10 Score=131.03 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.+.|+|+|.+|+|||||||+|.+..+. .+..+|.|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 366999999999999999999976543 45556667664333333 3345699999999644
Q ss_pred -----hhHH-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc------------CCceEEEEeecccccCcccCCCc
Q 000626 870 -----FTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 870 -----F~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~------------~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
..-+ ....+..+|+++||||++.+...+.....+.|... .-|+|+++||+|+.......+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 2222 23457789999999999887776666655555432 24889999999986321111111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEE-eCCCcCCCChhhHHHHHHHHH
Q 000626 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIV-PTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iV-pvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
++ .| .....+..++++ .+|++|++|+..|...|...+
T Consensus 412 ~~----------------------------------~~-~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV----------------------------------VY-PSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce----------------------------------ec-cccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00 00 000112334444 599999999999998876543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=130.04 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...+.||||+|...-.. ..+..||++|||++...|-.-|.... -...+..|||+||+|++.. ....
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~------~~a~- 213 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNK------TAAR- 213 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccch------hHHH-
Confidence 45799999999652111 13567999999987555444333221 0122335899999998721 1100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.....+...|.... .. ..+...||++|||++|.||++|+..|..+++
T Consensus 214 --------------~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 --------------RAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------------HHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01111222221100 00 0012358999999999999999999988765
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-10 Score=113.46 Aligned_cols=158 Identities=24% Similarity=0.215 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.|||..|+||||++-+|--.++.... + |+......+ .|++-.+++||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-P--tigfnve~v----------------~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-P--TIGFNVETV----------------PYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-C--CCCcCcccc----------------ccccccceeeEccCcccccH
Confidence 4445899999999999998777544433111 1 111111122 24445699999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC--CHHHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv--~~QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++..+|.+|+|||.++.. .....++..+|.. .+..++|++||+|..+. - +
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-------~-----------t--- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-------L-----------T--- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-------h-----------h---
Confidence 9999999999999999998743 2333344444443 34678999999997531 0 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
-.++ +...|+.. +. ...+.||.+||.+|+|++..++||..-++
T Consensus 137 ----~~E~---~~~L~l~~-Lk------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 137 ----RSEV---LKMLGLQK-LK------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ----HHHH---HHHhChHH-Hh------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0111 11222211 00 13479999999999999999999876443
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-10 Score=122.83 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe------------eee--eEecccccccchhhcc----ccccc
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ------------IGA--TYFPAENIRERTRELK----ANATL 854 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~------------iga--~~~~~~~i~~~~~~i~----~~~~~ 854 (1384)
..|+|+|+|+.|+|||||+.+|+.........+-+..+ .|. ..+....+........ ....+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 35679999999999999999997531100000001101 111 1111111100000000 00111
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....+.||+|.|..... .......++.++|||+.++...+. +.....+.|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 24579999999932111 111234566778999987654222 2223345789999999999621 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+..+...+... ....+++++||++|.||..|+.+|..+
T Consensus 168 -----------------~~~~~~~l~~~-------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKI-------------NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHh-------------CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11111222221 123689999999999999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=121.08 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=84.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe---e--------eeeEeccc--------ccc----cchhh
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ---I--------GATYFPAE--------NIR----ERTRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~---i--------ga~~~~~~--------~i~----~~~~~ 847 (1384)
.+..|.|+|+|+.++||||||++|.+..+.....|.+|.. + .+.++... .+. ..+..
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 3677889999999999999999999765322222333311 1 01111000 000 00000
Q ss_pred cc---ccc-------c---cCCCCEEEEeCCCCcch-------------hHHHHhcccc-cceeEEEeeccCCCCHHH-H
Q 000626 848 LK---ANA-------T---LKVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 899 (1384)
Q Consensus 848 i~---~~~-------~---~~~~~i~~IDTPGHe~F-------------~~~r~rg~~~-aDiaILVVDa~~Gv~~QT-~ 899 (1384)
+. ..+ . -..+.|+||||||.... ..++..++.. .+++++|||+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 00 000 0 11367999999997521 2345566774 569999999999988877 5
Q ss_pred HHHHHHHhcCCceEEEEeecccc
Q 000626 900 ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 900 E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+.++.+...+.|+|+|+||+|.+
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 88888888999999999999987
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-10 Score=114.51 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=97.7
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcc
Q 000626 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~ 878 (1384)
++|...+|||+||-++..+.+-.+.. ...+|..+- ...+..+. ..-.+.+|||.|++.|.+....++
T Consensus 2 llgds~~gktcllir~kdgafl~~~f---istvgid~r--------nkli~~~~--~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDFR--------NKLIDMDD--KKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce---eeeeeeccc--------cceeccCC--cEEEEEEeeccchHHHhhhhHhhh
Confidence 68999999999998776554443321 111221110 00111100 112489999999999999999999
Q ss_pred cccceeEEEeeccCCCCHHHHHHH-HHHHhc---CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000626 879 GLCDIAILVVDIMHGLEPQTIESL-NLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~---~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
+.+|..+||+|+.+.........| ..+..+ .+.+.++.||||+.+.. + +...-+.+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er-----~------------v~~ddg~k--- 128 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER-----A------------VKRDDGEK--- 128 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh-----c------------cccchHHH---
Confidence 999999999999886665555544 444443 37889999999985310 0 00000111
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
....+| +||+.+||+||.|++-.+..|..
T Consensus 129 ---la~~y~---------------ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 129 ---LAEAYG---------------IPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred ---HHHHHC---------------CCceeccccccccHhHHHHHHHH
Confidence 112222 59999999999999877766654
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-10 Score=115.08 Aligned_cols=208 Identities=14% Similarity=0.100 Sum_probs=129.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
--|...++|+|..++||||||.+++.+-+..+.... ||..++..+ +.+. ...-.+.+|||.|++.|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykkt----Igvdflerq------i~v~----~Edvr~mlWdtagqeEf 82 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT----IGVDFLERQ------IKVL----IEDVRSMLWDTAGQEEF 82 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccc----cchhhhhHH------HHhh----HHHHHHHHHHhccchhH
Confidence 346667999999999999999999987666544333 343333211 0110 00123779999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHH-HHHHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
-.....+++.+...|||++.++..... |.++.+-+.. ..+|.|+|-||||++.+ +-+
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~-------------- 142 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQM-------------- 142 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhc--------------
Confidence 999999999999999999998865433 3333333332 35999999999999732 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceE-EEEEEE
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCT-VLEVKV 1026 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~-VlEvk~ 1026 (1384)
-...+.-|+.. -.+.++.+|++...|+...|..|...+...+...++.+...+-. +-..+.
T Consensus 143 ----~~~evE~lak~--------------l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~s 204 (246)
T KOG4252|consen 143 ----DKGEVEGLAKK--------------LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTYS 204 (246)
T ss_pred ----chHHHHHHHHH--------------hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCcc
Confidence 00111111111 12467789999999999999999887777666655543321110 000011
Q ss_pred EcCcceEEEEEEEeeeecCCCEEEEcc
Q 000626 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1027 ~~G~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
. .+..+..-..+++.++++|++.+
T Consensus 205 t---sp~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 205 T---SPPSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred C---CCCcceeeeeeeecCCceeeech
Confidence 1 11222233456777888777643
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=125.96 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhc----c--cccccCCCCEEEEeCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL----K--ANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i----~--~~~~~~~~~i~~IDTPG 866 (1384)
+.|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+ . +...+....|+||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4599999999999999999998876554445444 56676665432111110000 0 00011223589999999
Q ss_pred Cc----ch---hHHHHhcccccceeEEEeecc
Q 000626 867 HE----SF---TNLRSRGSGLCDIAILVVDIM 891 (1384)
Q Consensus 867 He----~F---~~~r~rg~~~aDiaILVVDa~ 891 (1384)
.. .+ .+...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 23 233344588899999999996
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=106.14 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee--eeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--ATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig--a~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|+.+|-.++||||||-.|....... .+..+| .-.++ |++-.|++||..|+.....++
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFnvetVt----------------ykN~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT----------------YKNVKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCcc-----cccccceeEEEEE----------------eeeeEEeeeeccCchhhhHHH
Confidence 7899999999999999997443211 111112 12222 333459999999999999999
Q ss_pred HhcccccceeEEEeeccCC--CCHHHHHHHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++++..+-++|||||+.+. +...-.+..+++ .+..+|++|..||-|++...+
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~----------------------- 135 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK----------------------- 135 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-----------------------
Confidence 9999999999999998764 222222333333 235689999999999973210
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+|...|.-.-+ -+....+.|+||.+|.|+.+-|.||...+
T Consensus 136 --pqei~d~leLe~~----------r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 --PQEIQDKLELERI----------RDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred --HHHHHHHhccccc----------cCCccEeeccccccchhHHHHHHHHHhhc
Confidence 1222222211111 12445789999999999988888876543
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=105.60 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=93.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----CcchhH
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----He~F~~ 872 (1384)
+.+||.+|+|||||+.+|++..+... -||-+ . |+. =..||||| |..+..
T Consensus 4 i~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv---e------------------~~d--~~~IDTPGEy~~~~~~Y~ 56 (148)
T COG4917 4 IAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV---E------------------FND--KGDIDTPGEYFEHPRWYH 56 (148)
T ss_pred eEEecccccCchhHHHHhhcchhhhc----cccee---e------------------ccC--ccccCCchhhhhhhHHHH
Confidence 89999999999999999986543211 12211 1 111 13799999 444444
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.....+..+|++++|-.++++.++ -.-.++.....|+|-+++|+|+.. . ..+
T Consensus 57 aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae------d-------------------~dI 108 (148)
T COG4917 57 ALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE------D-------------------ADI 108 (148)
T ss_pred HHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc------h-------------------HhH
Confidence 444556778999999999986332 112233445568999999999962 1 234
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+..+|.+.| --+||.+|++...||.+|+..|..
T Consensus 109 ~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 109 SLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 45556676665 248999999999999999988764
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-09 Score=121.71 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
..+.+.||||||...-. ...+..+|.+++|.....|-. +..+.. ...++|.|||+||+|++.. .. .
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~------~~-~ 190 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGA------TN-V 190 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccch------hH-H
Confidence 35679999999964222 124567889888865443322 111111 1246889999999998621 10 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.. +...+. ..+.. +... ...| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 ~~-------~~~~~~-------~~l~~--l~~~----~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 TI-------ARLMLA-------LALEE--IRRR----EDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HH-------HHHHHH-------HHHhh--cccc----ccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 000000 00000 0000 0011 24799999999999999999987753
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-09 Score=114.28 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=106.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|...+|||+||-.+....+.....+.+.....+. +.... =+...+.+|||.|+++|..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~d-------------g~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDD-------------GKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecC-------------CCEEEEeeeecCCCccccc
Confidence 345689999999999999999887767666555554332222 11110 0012489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHH--HHHHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+|...+..+|++|++++.+...... ...++-.++. .++|+|+|.+|.||.. +......|..+.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V--- 139 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV--- 139 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc---
Confidence 9988999999999999876632222 1112223332 4699999999999962 2222222222110000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+......+. +-+.++.+||++..|+.+.++..+..
T Consensus 140 --t~~~g~~lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 --TYEQGLELAKEI--------------GAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred --cHHHHHHHHHHh--------------CcceeeeehhhhhCCcHHHHHHHHHH
Confidence 000111111111 33689999999999999988776543
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-09 Score=105.89 Aligned_cols=155 Identities=25% Similarity=0.254 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.++|-.++||||||..|.+..+. .+|..-|.....+.. + ...++++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~----------~---g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEY----------D---GTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEee----------c---CcEEEEEEecCCccccch
Confidence 4455899999999999999999765433 233333322221110 0 113599999999999999
Q ss_pred HHHhcccccceeEEEeeccCC--CCHHHHHHHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000626 873 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++...|++|+|||+++. +.....++..++ +...+|+.|+.||.|++.. +
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta------a---------------- 135 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA------A---------------- 135 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh------c----------------
Confidence 999999999999999998763 233333333444 3456899999999999721 1
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
....+...+.-.|+. .+.+.|-.+||++++|+.+-..|+.
T Consensus 136 ---~~eeia~klnl~~lr----------dRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 136 ---KVEEIALKLNLAGLR----------DRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred ---chHHHHHhcchhhhh----------hceEEeeeCccccccCccCcchhhh
Confidence 112222222222221 1346889999999999998888764
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-09 Score=115.89 Aligned_cols=148 Identities=24% Similarity=0.257 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc--
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-- 868 (1384)
....|+|+|+|..++|||||+.+|+..++.... ++.++.-|+-.. ..+. ....++|.||-|+-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h~----a~Lp-----sg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLHS----AHLP-----SGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhhh----ccCC-----CCcEEEEeechhhhhh
Confidence 445689999999999999999999977665433 333333332110 0010 12348999999953
Q ss_pred -------chhHHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHHhcCCc-------eEEEEeecccccCcccCCCchH
Q 000626 869 -------SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 869 -------~F~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~~vP-------~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
+|..... -...+|++|.|+|++|... .|-...+..|+..++| +|=|=||+|...++.
T Consensus 240 LP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------- 311 (410)
T KOG0410|consen 240 LPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------- 311 (410)
T ss_pred CcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-------
Confidence 3444333 3556899999999999754 5555667788888875 444677777642210
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. .....|++||+||+|+.+|+..+...
T Consensus 312 -------------------------------e~----------E~n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 312 -------------------------------EE----------EKNLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred -------------------------------cc----------ccCCccccccccCccHHHHHHHHHHH
Confidence 00 11137899999999999999887543
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-09 Score=116.98 Aligned_cols=165 Identities=20% Similarity=0.222 Sum_probs=108.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc---ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH- 867 (1384)
-+.|-++++|..++|||+||+.|...... .....|-||.|..+.+. ..++++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------------------ceEEEEecCCcc
Confidence 35577999999999999999999865432 11145666666544332 35999999991
Q ss_pred ---------cchhHHHHhccc---ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000626 868 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 868 ---------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
.+|.++...++- ..=.+.|+||++-++++.....|.+|...++|+.+|+||||+. |...+..
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~--k~~~~~~---- 268 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ--KKVKRTG---- 268 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh--hhccccc----
Confidence 334444443332 2335678899999999999999999999999999999999986 3221100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+-..++..| +++.... +....|++.+|+.|+.|++.|+-.|.+.
T Consensus 269 --kKp~~~i~~~f-------------~~l~~~~------f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 269 --KKPGLNIKINF-------------QGLIRGV------FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred --cCccccceeeh-------------hhccccc------eeccCCceeeecccccCceeeeeehhhh
Confidence 00000000000 1111111 1234578899999999999988776654
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-08 Score=116.71 Aligned_cols=170 Identities=18% Similarity=0.266 Sum_probs=87.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cccc-Cce---eEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEA-GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~-gGI---Tq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe- 868 (1384)
..|+|+|.+|+|||||+|+||+-.-. .+.+ .|+ |.....+.. -+.+.++|||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----------------p~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----------------PKFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------------------SS-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----------------CCCCCCeEEeCCCCCC
Confidence 46999999999999999999864221 1111 121 111111111 123679999999953
Q ss_pred -chh---HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeeccc-ccCcccCCCchHHHHHHHhhHH
Q 000626 869 -SFT---NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 869 -~F~---~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl-~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
.|. -+-..++...|++|+|.+ ..+.......++.++.++.||.+|-||+|. +++-.......|.+. .
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e------~ 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEE------K 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HH------T
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHH------H
Confidence 342 223346778898777664 446677777788888999999999999996 211111111122110 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC--CCChhhHHHHHHHHHH
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t--GeGI~eLl~~L~~~~~ 1004 (1384)
+ +...-..+...|...|+. ..+||.||+.. ...++.|...|..-++
T Consensus 171 ~---L~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 171 L---LQEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp H---HHHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred H---HHHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 111112344555555542 35788888874 4567777777765544
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=107.74 Aligned_cols=64 Identities=30% Similarity=0.401 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcch----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHH-HhcCCceEEEEeec
Q 000626 856 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-KMRNTEFIVALNKV 919 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll-k~~~vP~IVaINKi 919 (1384)
..+|+||||||..+. ..++..++..+|++|+|+++.+.+..+....|..+ ....-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999996442 35567778999999999999998776666665544 44555688899985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-08 Score=109.55 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=73.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...++.|+|||++|+|||||+++|++..+. .+...+.|..+..+... +....|+||||||..+
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~----------------~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT----------------VDGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCc
Confidence 345567999999999999999999987643 22233334443322222 1224599999999765
Q ss_pred hhH----------HHHhccc--ccceeEEEeeccC-CCCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000626 870 FTN----------LRSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 870 F~~----------~r~rg~~--~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
+.. .+.+++. ..|++|+|..++. .+.......++.+.. ++ .++|||+|++|..
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 521 1222332 4677777765543 344555555555543 33 4799999999986
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=110.02 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=61.4
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce--EEEEeecccccCcccCCCchHH
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~--IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
..++||.|.|.. ...... ...+|.+|+|||+.++...+.. + ...+.+ ++++||+|+... ...
T Consensus 92 ~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~----~~~--- 155 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPM----VGA--- 155 (199)
T ss_pred CCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcccc----ccc---
Confidence 568999999931 111111 1236889999999887653211 1 123344 999999999621 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+...+ ...+++++||++|+||.+|+.+|..+
T Consensus 156 ----------------~~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 156 ----------------DLGVMERDAKKMR-------------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred ----------------cHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 0111222232221 23689999999999999999988643
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=96.68 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=70.6
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecc
Q 000626 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~ 1097 (1384)
+++|+|++...|+|++++++|++|+|++||.|+++ ..+.+||+|+++.+. ..+++.+++++.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988763 346699999988752 1234445555555 5
Q ss_pred cccc-ccCCCceEEeCCCccHHHHHH
Q 000626 1098 GLEH-AIAGTGLYVVGPDDDLEDVKE 1122 (1384)
Q Consensus 1098 gL~~-~~aG~~l~v~~~e~~~~~~~~ 1122 (1384)
||+. +.+|+.|+++.++..+..+..
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 8887 489999999999887766543
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=118.76 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
-++.++|+|.+++|||||++.++...+....+...|..+..-+ +.|+...+++|||||.-+-
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH----------------~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH----------------LDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh----------------hhhheeeeeecCCccccCcch
Confidence 3445999999999999999999877655444333333322222 2344556999999994321
Q ss_pred ---hH-HHHh--c-ccccceeEEEeeccC--CCCH--H--HHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000626 871 ---TN-LRSR--G-SGLCDIAILVVDIMH--GLEP--Q--TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 871 ---~~-~r~r--g-~~~aDiaILVVDa~~--Gv~~--Q--T~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
.+ ++.. + +.+--+|+++.|.+. |... | -+.+|+-|. .|.|+|+|+||||... ..++.
T Consensus 231 EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~------~edL~--- 300 (620)
T KOG1490|consen 231 EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMR------PEDLD--- 300 (620)
T ss_pred hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccC------ccccC---
Confidence 11 1111 1 122235788888864 4432 2 223333333 4679999999999873 22221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..-..++..+... +.++|+.+|+++-+||.++-...+
T Consensus 301 ------------~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~AC 337 (620)
T KOG1490|consen 301 ------------QKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTAC 337 (620)
T ss_pred ------------HHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHH
Confidence 1112333344333 347999999999999988765544
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=105.15 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=84.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH--
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 873 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~-- 873 (1384)
|++||..++||||+...|.+...+ ....-|.|.++....+.. +..-.|+|||+||+..|...
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---------------~~~~~l~iwD~pGq~~~~~~~~ 66 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---------------LSFLPLNIWDCPGQDDFMENYF 66 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---------------TTSCEEEEEEE-SSCSTTHTTH
T ss_pred EEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---------------CCCcEEEEEEcCCccccccccc
Confidence 899999999999999998754322 111123343333222211 11125999999999887654
Q ss_pred ---HHhcccccceeEEEeeccCCCCHHHHH----HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 874 ---RSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 874 ---r~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
+..-++.+.++|+|+|+...-....+. .+..|.. .++.|.|+|+|||++. .+.+..
T Consensus 67 ~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~~-------- 131 (232)
T PF04670_consen 67 NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDEREE-------- 131 (232)
T ss_dssp TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHHH--------
T ss_pred cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHHH--------
Confidence 456678999999999998322333332 3333443 3588999999999972 222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC
Q 000626 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG 989 (1384)
.|......|...+...+++ .+.++.||-...
T Consensus 132 --~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~ 162 (232)
T PF04670_consen 132 --IFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE 162 (232)
T ss_dssp --HHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST
T ss_pred --HHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc
Confidence 2233344555555554432 478999998863
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=104.31 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=76.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
-.++++|--|+||||||..|-..+....- -|.|..+..+. +.+-.++.+|..||..-...+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHH
Confidence 34899999999999999999755432111 12222111111 122348999999999988888
Q ss_pred HhcccccceeEEEeeccCC-CCHHHHHHHHHHH----hcCCceEEEEeeccccc
Q 000626 875 SRGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk----~~~vP~IVaINKiDl~~ 923 (1384)
..++..||.+|++||+.+- .....+..+..|. ..++|++|..||||+++
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 9999999999999999763 2233444444332 35799999999999974
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=113.33 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc--cchhhcccccccCCCCEEEEeCCCCcc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~--~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.++..|+|+|.+++|||||+++|++..+..+..++.|.+.....+++...+ ..+... .........|.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~-~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHF-KPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHc-CCcccCCCCeEEEECCCcCc
Confidence 345569999999999999999999888777777777755443333332211 111100 01111123599999999431
Q ss_pred -------hhHHHHhcccccceeEEEeecc
Q 000626 870 -------FTNLRSRGSGLCDIAILVVDIM 891 (1384)
Q Consensus 870 -------F~~~r~rg~~~aDiaILVVDa~ 891 (1384)
..+.....++.||++|+|||+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3334445677899999999984
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=105.58 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
...+.|+|||.+|+|||||+|+|++..+... ...+.|.+...... .+....|+||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~----------------~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR----------------TRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE----------------EECCeEEEEEECCCCCch
Confidence 4566799999999999999999998765321 11111111100000 012346999999997654
Q ss_pred hHH-------HHhcc--cccceeEEEeeccC-CCCHHHHHHHHHHHhc-C----CceEEEEeecccc
Q 000626 871 TNL-------RSRGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKMR-N----TEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~-------r~rg~--~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~-~----vP~IVaINKiDl~ 922 (1384)
..+ ....+ ...|++|||+..+. .+.......+..+... | .++||++|+.|..
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 221 11111 24789999965543 3444444455444431 2 4799999999976
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=114.07 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee--------------eeEecccccccchhh-c-cc--cccc
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--------------ATYFPAENIRERTRE-L-KA--NATL 854 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig--------------a~~~~~~~i~~~~~~-i-~~--~~~~ 854 (1384)
...+|.|||.+|+||||||.+|+..........-|.-+++ ...+....+...... + .. ....
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~ 182 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPL 182 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhh
Confidence 4567999999999999999988753211111111111111 111111110000000 0 00 0112
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....++||++-|.-..-.... + ..+.-|.|++...|.. +.+ .+-.....+-||+|||+|++. ...+
T Consensus 183 ~~~d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~d-kpl---Kyp~~f~~ADIVVLNKiDLl~------~~~~- 248 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGED-KPL---KYPHMFAAASLMLLNKVDLLP------YLNF- 248 (290)
T ss_pred cCCcEEEEECCCCccCCCccc--h-hhceeEEEEECccccc-cch---hccchhhcCcEEEEEhHHcCc------ccHH-
Confidence 233688999988411100000 1 1133457777777643 111 222334567899999999962 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.+..+...+... ....+||++||++|+|+..|+.||..
T Consensus 249 ----------------dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 249 ----------------DVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 112222233222 13468999999999999999999864
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-08 Score=109.02 Aligned_cols=173 Identities=22% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccc-------------Cc-----------eeEeeeeeEecccccccchhh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-------------GG-----------ITQQIGATYFPAENIRERTRE 847 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~-------------gG-----------ITq~iga~~~~~~~i~~~~~~ 847 (1384)
-+.++|+|.|++|+|||||++.|...-...+.. || .+.+-+.|.-+... +.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~at-RG~lGG 105 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMAT-RGSLGG 105 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE----SSHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCc-CCCCCC
Confidence 356789999999999999999986322111110 11 01112222222111 000000
Q ss_pred ccc-------ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000626 848 LKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 848 i~~-------~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
+.. -+..-.+.+.||.|-|.---- ..-...||++|||+-...|-.-|.+.. .+ +.++=||||||.|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gi---mEiaDi~vVNKaD 178 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKA-GI---MEIADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-T-TH---HHH-SEEEEE--S
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhh-hh---hhhccEEEEeCCC
Confidence 100 011123569999999842211 112567999999998887766555432 01 1135699999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
+.. +. .+ ...+...|.... .. ... ...|++.|||.+|.||++|+..|.
T Consensus 179 ~~g-------A~----------~~-------~~~l~~~l~l~~-~~-----~~~--W~ppV~~tsA~~~~Gi~eL~~~i~ 226 (266)
T PF03308_consen 179 RPG-------AD----------RT-------VRDLRSMLHLLR-ER-----EDG--WRPPVLKTSALEGEGIDELWEAID 226 (266)
T ss_dssp HHH-------HH----------HH-------HHHHHHHHHHCS-TS-----CTS--B--EEEEEBTTTTBSHHHHHHHHH
T ss_pred hHH-------HH----------HH-------HHHHHHHHhhcc-cc-----ccC--CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 752 11 11 111222222110 00 011 236999999999999999999987
Q ss_pred HHHH
Q 000626 1001 QWTQ 1004 (1384)
Q Consensus 1001 ~~~~ 1004 (1384)
.+..
T Consensus 227 ~~~~ 230 (266)
T PF03308_consen 227 EHRD 230 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=106.09 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc--C----c--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--G----G--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--g----G--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
.+|.|+|..|+|||||++.|+++.+..... . . -|..+....+... +. .. ...|+||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~---e~------~~---~l~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE---EN------GV---KLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE---ET------CE---EEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec---cC------Cc---ceEEEEEeCCC
Confidence 358999999999999999999876543220 0 0 0111111111110 00 00 12599999999
Q ss_pred CcchhHH------------------HH------h---cccccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEEEee
Q 000626 867 HESFTNL------------------RS------R---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 867 He~F~~~------------------r~------r---g~~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
+.+..+. +. | .=...|++|++|+++ +|+.+..++.++.|..+ +++|.||.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 6543211 00 1 112368999999985 79999999999888776 899999999
Q ss_pred cccc
Q 000626 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 152 aD~l 155 (281)
T PF00735_consen 152 ADTL 155 (281)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9987
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=105.59 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=98.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------------cCc-----------eeEeeeeeEecccccc---
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPAENIR--- 842 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-------------~gG-----------ITq~iga~~~~~~~i~--- 842 (1384)
..-++++|.|.|.+|+|||||++.|...-+..|. .|| ++.+.++|+-+...--
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3456779999999999999999998532111111 111 2334444444432110
Q ss_pred ---cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeec
Q 000626 843 ---ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 843 ---~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKi 919 (1384)
..+..+..-+.--.+.+.||.|-|.-.--. --...||++|+|.-..-|-.-|.+.. .+ +.+-=||||||.
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-Gi---mEiaDi~vINKa 199 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GI---MEIADIIVINKA 199 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hh---hhhhheeeEecc
Confidence 011100000111234689999988422111 12356899999887777777776643 11 223458999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|+.. +.. + .. .+...|... . .+|... +...|+|.|||.+|+||++|+..|
T Consensus 200 D~~~-------A~~--a--------~r-------~l~~al~~~---~-~~~~~~--~W~ppv~~t~A~~g~Gi~~L~~ai 249 (323)
T COG1703 200 DRKG-------AEK--A--------AR-------ELRSALDLL---R-EVWREN--GWRPPVVTTSALEGEGIDELWDAI 249 (323)
T ss_pred Chhh-------HHH--H--------HH-------HHHHHHHhh---c-cccccc--CCCCceeEeeeccCCCHHHHHHHH
Confidence 9742 211 1 11 111111111 0 012222 234699999999999999999998
Q ss_pred HHHHH
Q 000626 1000 VQWTQ 1004 (1384)
Q Consensus 1000 ~~~~~ 1004 (1384)
..+..
T Consensus 250 ~~h~~ 254 (323)
T COG1703 250 EDHRK 254 (323)
T ss_pred HHHHH
Confidence 77653
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=100.32 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..++++|.++.||||++.+.+...+.......+......+.|..+ .....|+.|||.|.+.|..++
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn--------------~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN--------------RGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc--------------cCcEEEEeeecccceeecccc
Confidence 458999999999999999999777654333322222222222111 011249999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH--HHHh-cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~-~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.-++-..-+||+++|....+.-+....|. +++. .|+|+|+|.||+|.-. +-
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-----r~--------------------- 130 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-----RK--------------------- 130 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-----cc---------------------
Confidence 98888889999999998877666655552 3333 3589999999999641 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+. + ....++.++.+||+++.|+.--+.+|...
T Consensus 131 -------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 131 -------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred -------cccccce---e----eecccceeEEeecccccccccchHHHhhh
Confidence 0000000 0 12467899999999999999888887643
|
|
| >cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=89.76 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=67.7
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeec
Q 000626 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~ 1096 (1384)
+++|+|++..+|+|++++++|++|+|++||.|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999988864 34677888886542 1122 334555566
Q ss_pred ccccc-ccCCCceEEeCCCccHHHHH
Q 000626 1097 QGLEH-AIAGTGLYVVGPDDDLEDVK 1121 (1384)
Q Consensus 1097 ~gL~~-~~aG~~l~v~~~e~~~~~~~ 1121 (1384)
.||.. +.+|+.|+++.++.++..+.
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~ 90 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIG 90 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhh
Confidence 78876 78999999999998765543
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=100.27 Aligned_cols=134 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCc--eeEeeeeeEe------------------cccccccchhhc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYF------------------PAENIRERTREL 848 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gG--ITq~iga~~~------------------~~~~i~~~~~~i 848 (1384)
++-.-.|.|.+||+-.+||||+++.|+...+..-+.|. .|..+-+.+. |+..+...+..+
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 34445689999999999999999999977655322211 1111111100 000000000000
Q ss_pred ccc---cccC---CCCEEEEeCCCC-----------cchhHHHHhcccccceeEEEeeccC-CCCHHHHHHHHHHHhcCC
Q 000626 849 KAN---ATLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT 910 (1384)
Q Consensus 849 ~~~---~~~~---~~~i~~IDTPGH-----------e~F~~~r~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~v 910 (1384)
-.. ..+. ...|+||||||. .+|+......+..||++||++|+.. .+.+.+.++|..|+-+.-
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 000 0111 136999999993 4678888888889999999999865 578999999999999888
Q ss_pred ceEEEEeecccc
Q 000626 911 EFIVALNKVDRL 922 (1384)
Q Consensus 911 P~IVaINKiDl~ 922 (1384)
.+-||+||.|.+
T Consensus 213 kiRVVLNKADqV 224 (532)
T KOG1954|consen 213 KIRVVLNKADQV 224 (532)
T ss_pred eeEEEecccccc
Confidence 899999999987
|
|
| >KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-08 Score=115.99 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=58.8
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVaINKiDl~ 922 (1384)
..+++||.|||.+|...+..|.+++|++||+|.+.-| .-.||.+|..+...+++ ++|+.+||||-.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998433 35899999999999984 788999999975
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-07 Score=91.59 Aligned_cols=117 Identities=22% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee-EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT-q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F- 870 (1384)
+.-.|+|+|.-++|||.||..|++.+...+..---| .+|....+.+.... -..+.|.||.|....
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rga-------------rE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGA-------------REQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCCh-------------hheEEEeecccccCch
Confidence 344589999999999999999998876543321111 22322222222100 024899999998888
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh-----cCCceEEEEeecccc
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-----RNTEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-----~~vP~IVaINKiDl~ 922 (1384)
..+-..+++.+|+.|||++.++.-..|-.+.|.--.. ..+|+||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6667778888999999999988555555554432211 238999999999984
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=113.12 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=75.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.++...|+|+|.-|+|||||+-+|+...+... |...+--+.+|.+... ..-..+|+||+-...-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadvtP------------e~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADVTP------------ENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCccCc------------CcCceEEEecccccch
Confidence 34555699999999999999999987655422 1111111122221110 1112789999876665
Q ss_pred hHHHHhcccccceeEEEeeccC-----CCCHHHHHHHHHHH--hcCCceEEEEeecccccC
Q 000626 871 TNLRSRGSGLCDIAILVVDIMH-----GLEPQTIESLNLLK--MRNTEFIVALNKVDRLYG 924 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~-----Gv~~QT~E~l~llk--~~~vP~IVaINKiDl~~~ 924 (1384)
......-++.+|+++||++.++ +++.-.+-+++.+. -.++|+|+|.||+|...+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 5555667899999999998876 23332233333332 146899999999999753
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-07 Score=102.09 Aligned_cols=163 Identities=19% Similarity=0.176 Sum_probs=86.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccccccc----chh------hcccc------------c
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE----RTR------ELKAN------------A 852 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~----~~~------~i~~~------------~ 852 (1384)
..|.|+|+|||||||||.+++..-.......-||.++.+..- ...++. +.. .++.+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~D-a~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKED-ADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhh-HHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 469999999999999999987433222333334444322000 000000 000 01000 0
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCc
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
.+..-.|+||.+.| +...-. .....| +-|+|||...|..---.-+= .+ . ..=|+||||+|+.+ ..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP-~i--~-~aDllVInK~DLa~------~v 158 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGP-GI--F-KADLLVINKTDLAP------YV 158 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCC-ce--e-EeeEEEEehHHhHH------Hh
Confidence 11123699999988 221111 123345 88999999987531100000 00 0 13478999999973 11
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+ .+..+..... .+.+..|||.+|++||+|+.+++.||...
T Consensus 159 ~~-----------------dlevm~~da~-------------~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GA-----------------DLEVMARDAK-------------EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred Cc-----------------cHHHHHHHHH-------------HhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11 0111111111 12466899999999999999998887643
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=107.25 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----cccc------------cccCceeEee-eeeEecccccccchhhcccccccCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGGITQQI-GATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----~v~~------------ge~gGITq~i-ga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..|+|+|++++|||||+++|... ++.. ....|-|+.. -..++|.... .+.....+ ..
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAv-----EI~~~~~~-~~ 91 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAV-----EININEGT-KF 91 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcce-----EEeccCCC-cc
Confidence 34899999999999999999987 4331 1123311111 1122222211 11111000 13
Q ss_pred CEEEEeCCCCcc-------------------------hhHH----HHhccc-ccceeEEEe-ecc------CCCCHHHHH
Q 000626 858 GLLVIDTPGHES-------------------------FTNL----RSRGSG-LCDIAILVV-DIM------HGLEPQTIE 900 (1384)
Q Consensus 858 ~i~~IDTPGHe~-------------------------F~~~----r~rg~~-~aDiaILVV-Da~------~Gv~~QT~E 900 (1384)
.+.||||+|+.. |... +...+. .+|++|||. |++ ++....-..
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 589999999532 2111 223345 799999999 775 456677788
Q ss_pred HHHHHHhcCCceEEEEeeccc
Q 000626 901 SLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 901 ~l~llk~~~vP~IVaINKiDl 921 (1384)
.+..|+..++|||+++|++|-
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCC
Confidence 899999999999999999993
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=95.71 Aligned_cols=110 Identities=25% Similarity=0.248 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch---
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F--- 870 (1384)
.|+|||..|+|||||++.|++..+.... ..++|+.+...... +....|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999987764322 23344443333222 22346999999995331
Q ss_pred ----hHHHHh----cccccceeEEEeeccCCCCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000626 871 ----TNLRSR----GSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 871 ----~~~r~r----g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
.....+ .....+++|||+... .+.......|..+.. .+ -.+||++|..|..
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 122222 234578999999988 777777777766653 23 3689999999976
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-07 Score=92.86 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=67.0
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..+..+.+..||++|+|+|+.++...+....+.++...+.|+|+|+||+|++.. . .+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~---~~------------ 59 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------E---VL------------ 59 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------H---HH------------
Confidence 4456667777899999999999877766666666666678999999999998520 0 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.... .+... ...++|++||++|.|+..|+..|..+++
T Consensus 60 ---~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 60 ---EKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred ---HHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 0000 01100 1247899999999999999988876553
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-07 Score=104.33 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcch----hHHHHh--cccccceeEEEeeccCCCCHHHHHHHHHHH-hcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESF----TNLRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F----~~~r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||.... ...... ....+|.++||+|++.|- ...+.+.... ..+ +--|++||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-CCEEEEeeecCC
Confidence 46999999996532 211111 123579999999997752 2233222222 223 356789999975
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-06 Score=98.26 Aligned_cols=116 Identities=25% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------c----CceeEeeeeeEecccccccchhhcccccccCCCCEEE
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------A----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge------~----gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~ 861 (1384)
-.+.+|.++|..|+|||||++.|+++.+.... + .++...+....+.-+... ..|++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~--------------~~l~v 86 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFH--------------LNLTV 86 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeE--------------EEEEE
Confidence 34567999999999999999999987544331 1 112222222222111111 24999
Q ss_pred EeCCCCcchhHH------------------------HHhccc----ccceeEEEeec-cCCCCHHHHHHHHHHHhcCCce
Q 000626 862 IDTPGHESFTNL------------------------RSRGSG----LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEF 912 (1384)
Q Consensus 862 IDTPGHe~F~~~------------------------r~rg~~----~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~ 912 (1384)
|||||+-+|... ..|.-+ ..++|++.|-. .||+.+..++.+..+..+ +.+
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNl 165 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNL 165 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCe
Confidence 999997766422 002111 25788888876 589999999999888665 678
Q ss_pred EEEEeecccc
Q 000626 913 IVALNKVDRL 922 (1384)
Q Consensus 913 IVaINKiDl~ 922 (1384)
|.||-|.|..
T Consensus 166 IPVI~KaD~l 175 (373)
T COG5019 166 IPVIAKADTL 175 (373)
T ss_pred eeeeeccccC
Confidence 9999999986
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=103.31 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c--ccCceeEee---eee----------EecccccccchhhcccccccCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQI---GAT----------YFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~-g--e~gGITq~i---ga~----------~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
+.-+|+|+|++|+|||||+.+|....+.. + ..+-||.+. |+. .++.............-..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34579999999999999999997542211 1 111122111 000 0000000000000000012345
Q ss_pred CCEEEEeCCCCcch---hHHHHh---cccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-------eEEEEeecccc
Q 000626 857 PGLLVIDTPGHESF---TNLRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F---~~~r~r---g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-------~IVaINKiDl~ 922 (1384)
..++||||||...+ ...... +...+.-.+||++++.+....+.-.+.+....++| -=|++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 68999999996633 222222 23334566999999987665554444444443332 24778999975
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-07 Score=99.33 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=107.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
...+-. |.|+|..++|||+++.+.++.++.......|..+.....+.|+. ...-.+.|||..|++
T Consensus 22 r~hL~k--~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQe 86 (229)
T KOG4423|consen 22 REHLFK--VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQE 86 (229)
T ss_pred hhhhhh--hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhh
Confidence 344554 89999999999999999988776544433333332222222221 111248899999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh-----cC--CceEEEEeecccccCcccCCCchHHHHHHHh
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~--vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
.|.+|..-+++.+.++.+|+|.+..........|. -+-. .+ +|+|+..||||.-. |-..
T Consensus 87 rfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~~------------ 153 (229)
T KOG4423|consen 87 RFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAKN------------ 153 (229)
T ss_pred hhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhhh------------
Confidence 99999999999999999999998865543333332 2211 22 57899999999852 1100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+.+...++|| .-++.||++.+.||++....|+..
T Consensus 154 ---------~~~~~~d~f~kengf--------------~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 154 ---------EATRQFDNFKKENGF--------------EGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred ---------hhHHHHHHHHhccCc--------------cceeeeccccccChhHHHHHHHHH
Confidence 001122233344443 468899999999999988887754
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-06 Score=98.77 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCcchhHH-------HHhc-----ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~-------r~rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+... ..+. ...++.++||+|++.|.. ...........--+.-+++||+|..
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCC
Confidence 457999999996543221 1111 234788999999997642 2222222111112457899999964
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=99.87 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=59.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccccccchhhcccccccCCCCEEEEeCCCCc------
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe------ 868 (1384)
|+|+|.+++|||||+++|++.++..+..++.|.+ +|...++.......+.... ...+-...|.|+||||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~-~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVK-PKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhC-CceeeeeEEEEEECCCcCCCCchh
Confidence 5899999999999999999988766666776644 4444443321111110000 001111259999999943
Q ss_pred -chhHHHHhcccccceeEEEeeccC
Q 000626 869 -SFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 869 -~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.+.+.....++.||++|+|||+..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 233344455678999999999853
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=99.66 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=62.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
+.|+|+|.+++|||||+++|++..+.....++.|. .+|...++............ ...+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~-p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK-PKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcC-CccccCceEEEEECCCCCCCCC
Confidence 56999999999999999999988766566666664 45555554421110000000 0011123599999999432
Q ss_pred ----hhHHHHhcccccceeEEEeeccC
Q 000626 870 ----FTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
..+.....++.||++|+|||+..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 23344456788999999999853
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=94.98 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred cchhHHHHhcccccceeEEEeeccCCC-CHHHHH-HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000626 868 ESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
+.|..++...++.+|++|+|+|+.+.. ....+. ++..+...++|+|||+||+||... ... .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----~------- 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----E------- 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH----H-------
Confidence 566667777899999999999998643 443333 344555678999999999999621 000 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
......+... .++++.+||++|.||.+|+..|..
T Consensus 87 -------~~~~~~~~~~---------------g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 -------KEQLDIYRNI---------------GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -------HHHHHHHHHC---------------CCeEEEEecCCchhHHHHHhhhcC
Confidence 0111122221 248999999999999999987753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=95.47 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCcchhHHHH-------hc-----ccccceeEEEeeccCCCCHHHHHHHHHH-HhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLL-KMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~-------rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll-k~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+..... +. ...+|.++||+|++.| ..+...+... ...+ +.-+++||+|..
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCCC
Confidence 35799999999765432211 11 2248999999999754 3333333222 2233 467899999975
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=87.73 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCcchhHHH--------HhcccccceeEEEeeccCCCCHH--HHHHHHHHHhcCCceEEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r--------~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~~~vP~IVaINKiDl 921 (1384)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4678999999964322221 22344589999999987643211 11223444444 3789999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-06 Score=90.40 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000626 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|.+..|..++...+..+|++|+|||+.+......... .....+.|+|+|+||+|++..+ .. ...+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~-----~~-~~~~------- 83 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD-----KN-LVRI------- 83 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC-----CC-HHHH-------
Confidence 4455578999999999999999999987543222222 2233578999999999996311 00 0000
Q ss_pred HHHHHHHHHHHHH--HHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 945 QNEFNMRLVQIVT--QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~--~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..... .+...++ ...++|++||++|.||.+|+..|..++
T Consensus 84 --------~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 --------KNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------HHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 00000 0111111 113689999999999999998887654
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.3e-06 Score=99.70 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcchhH----HHHh--cccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTN----LRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~----~r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..... .+.. ....+|.++||+|++.|... ...+......--+.-|++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 35799999999654321 1111 23357889999999887433 222333333223567899999974
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=86.84 Aligned_cols=115 Identities=25% Similarity=0.327 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-----cccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-----GEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~-----ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.+|.|+|..|.|||||++.|....+.. +.+-.|++ .|.+... .+.+.... -.|++|||||+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th---vieE~gVk---------lkltviDTPGf 114 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH---VIEEKGVK---------LKLTVIDTPGF 114 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee---eeeecceE---------EEEEEecCCCc
Confidence 469999999999999999998655432 11112222 2222211 11111111 14999999997
Q ss_pred cchhHH--------------------------HHhcccc--cceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEEEee
Q 000626 868 ESFTNL--------------------------RSRGSGL--CDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 868 e~F~~~--------------------------r~rg~~~--aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
-+|++. |.+-+.. .+++++.|..+ |.+.|-.++++..|... +.+|-||-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEee
Confidence 665432 2222222 46788888775 67889999999877653 467788899
Q ss_pred cccc
Q 000626 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 194 aDtl 197 (336)
T KOG1547|consen 194 ADTL 197 (336)
T ss_pred cccc
Confidence 9976
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=96.84 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=66.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh-
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~- 871 (1384)
..|+|||.+|+|||||+|+|++..+.... .+++|. +..+... +....|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 45999999999999999999987643221 123332 2111111 112459999999976531
Q ss_pred -----HH----HHhccc--ccceeEEEeeccCC-CCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000626 872 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 872 -----~~----r~rg~~--~aDiaILVVDa~~G-v~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
.. ..+.+. .+|++|||+..+.. ........++.+.. .| -.+||++|..|.+
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11 122333 47888888876532 22233344444432 22 3689999999987
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=85.03 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=60.4
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
+.+..+|++|+|||+.+++..+......++... ++|+|+|+||+|++.. . .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------VTA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------HHH
Confidence 467789999999999987766666666666543 4899999999999621 0 001
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+..+... + .+.+|++||++|.|+..|+..|..+
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHH
Confidence 111112110 0 1236899999999999999888654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.6e-05 Score=84.74 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=42.2
Q ss_pred cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc
Q 000626 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI 987 (1384)
Q Consensus 908 ~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~ 987 (1384)
+|+||+||++|||.+. .|.......-..|.-....|+.++..+| ..+|.+|++
T Consensus 221 lGi~vlVV~TK~D~~s------------~leke~eyrDehfdfiq~~lRkFCLr~G---------------aaLiyTSvK 273 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVS------------VLEKEHEYRDEHFDFIQSHLRKFCLRYG---------------AALIYTSVK 273 (473)
T ss_pred CCCcEEEEEeccchhh------------HhhhcchhhHHHHHHHHHHHHHHHHHcC---------------ceeEEeecc
Confidence 3789999999999851 2222222222333333334444444444 478999999
Q ss_pred CCCChhhHHHHHHH
Q 000626 988 SGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 988 tGeGI~eLl~~L~~ 1001 (1384)
..-||+-|..+|+.
T Consensus 274 E~KNidllyKYivh 287 (473)
T KOG3905|consen 274 ETKNIDLLYKYIVH 287 (473)
T ss_pred cccchHHHHHHHHH
Confidence 99999877777664
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=86.31 Aligned_cols=99 Identities=22% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCCCcc-hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 864 TPGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
-|||-. ..+.....+..+|++|+|+|+.++........+..+ .+.|+|+++||+|++.. . .+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~-------~---~~----- 64 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP-------K---KT----- 64 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh-------H---HH-----
Confidence 478754 455666788899999999999887665444444443 35799999999998621 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+... ...++++||++|.|+..|+..|...+.
T Consensus 65 ----------~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 65 ----------KKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ----------HHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0011111111 136899999999999999998876653
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=91.72 Aligned_cols=116 Identities=25% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCc----e--eEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGG----I--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-~gG----I--Tq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
...+.|+|..|.|||||++.|+.+.+.... ..+ + |..|..+.+.. ...+ +. -.|++|||||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i---ee~g------~~---l~LtvidtPG 88 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI---EENG------VK---LNLTVIDTPG 88 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee---cCCC------eE---EeeEEeccCC
Confidence 367999999999999999999877544221 000 0 11111111100 0000 00 2499999999
Q ss_pred CcchhHH------------------------HHh-ccc--ccceeEEEeec-cCCCCHHHHHHHHHHHhcCCceEEEEee
Q 000626 867 HESFTNL------------------------RSR-GSG--LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 867 He~F~~~------------------------r~r-g~~--~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
.-++... ..| .+. ..+++++.|.. .||+.|..++.++.+... +.+|.||-|
T Consensus 89 fGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~-vNiIPVI~K 167 (366)
T KOG2655|consen 89 FGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK-VNLIPVIAK 167 (366)
T ss_pred CcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc-ccccceeec
Confidence 7654321 001 122 36789999987 478999999998877654 788999999
Q ss_pred cccc
Q 000626 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 168 aD~l 171 (366)
T KOG2655|consen 168 ADTL 171 (366)
T ss_pred cccC
Confidence 9986
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=89.12 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch---
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F--- 870 (1384)
.|.++|.+.+|||||+..|.++. |..++....|.-.| ...|+.+.|.++|.||.-.=
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG------------------~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG------------------VIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc------------------eEeccccceeeecCcchhccccc
Confidence 48999999999999999998653 44443222111111 12356678999999995321
Q ss_pred ----hHHHHhcccccceeEEEeeccCCC
Q 000626 871 ----TNLRSRGSGLCDIAILVVDIMHGL 894 (1384)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv 894 (1384)
...+...++.|+++++|+|+...+
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCcc
Confidence 223344567799999999987543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=81.09 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=56.5
Q ss_pred ceeEEEeeccCCCCHHHHHHH-HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000626 882 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960 (1384)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~ 960 (1384)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . . +...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~------~----~---------------~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK------E----V---------------LRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH------H----H---------------HHHHHHHHH
Confidence 789999999887655544444 4666778999999999998621 0 0 001111111
Q ss_pred HcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000626 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 961 ~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.. ....+|++||++|.|+..|+..|....
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999887654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=97.19 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCcchhHH------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~ 922 (1384)
..+.||||||+..+... ....+..+|.+|||+|++.| ..+...+..... .+++ -|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 37999999996654322 12334568999999999887 233333332221 2443 5789999964
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.9e-05 Score=91.52 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+....|+|||..++||||||.+|.+.. ....| .-++.+|+...... + .. ...++||=..|-..|.
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~--~aLeYty~~v~d~~-~-------dd--~~rl~vw~L~g~~~~~ 87 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKG--LALEYTYLDVKDED-R-------DD--LARLNVWELDGDPSHS 87 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCC--cccceEEEeeccCc-C-------Cc--CceeeEEEcCCCcchH
Confidence 344569999999999999999986532 11122 22444444322110 0 01 1235555555555566
Q ss_pred HHHHhcccc---cc-eeEEEeeccCC
Q 000626 872 NLRSRGSGL---CD-IAILVVDIMHG 893 (1384)
Q Consensus 872 ~~r~rg~~~---aD-iaILVVDa~~G 893 (1384)
.+....+.. .+ ++|||+|.+..
T Consensus 88 ~LLk~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 88 DLLKFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred hHhcccCCcccccceEEEEEecCCCh
Confidence 655544432 33 57778887754
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-05 Score=93.33 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=59.7
Q ss_pred HhcccccceeEEEeeccCC-CCH-HHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000626 875 SRGSGLCDIAILVVDIMHG-LEP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~-QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
...+..+|++|||+|+.+. +.+ +...+|..+...++|+|||+||+|++.. .. +
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~~-------------------~ 138 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------TE-------------------Q 138 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------HH-------------------H
Confidence 3457889999999999864 344 2344555566678999999999999621 00 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+...| +++|++||++|.||.+|+..|...
T Consensus 139 ~~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 139 QQWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 11111222222 478999999999999999887643
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=79.21 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=102.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.++-...|.++|....|||||+-...+...... .|+..|..+..-.. .-++.. ..+.|||..|++.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~-~i~~t~---------IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTV-SIRGTD---------ISFSIWDLGGQRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEE-EecceE---------EEEEEEecCCcHh
Confidence 344445689999999999999999876654321 24444433322110 000000 1388999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHH-HHHHHHHhcCC--ceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~v--P~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|.++..-....+-++++++|.+....-..+ ++.++++..+. --|++.+|.|+.-.. ..+....+
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I--------- 148 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETI--------- 148 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHH---------
Confidence 999998888888889999999875443333 44577777662 235679999974210 11111111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+. . --+.++|.+|+-...||..++..+.
T Consensus 149 ---------~~qar~YA--k---------~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 149 ---------SRQARKYA--K---------VMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred ---------HHHHHHHH--H---------HhCCcEEEeeccccccHHHHHHHHH
Confidence 11111110 0 0135899999999999998887664
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=88.21 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCEEEEeCCCCcchhHHH----H--hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNLR----S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r----~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..+.... . ......+-++||++++.+..... .........++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 469999999966543221 1 11224678999999988643222 334444444544 4559999975
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.1e-05 Score=84.24 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=51.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-hH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-TN 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-~~ 872 (1384)
.|+++|.+.+||||||..|+.+.-. .+++...|--.| ...|+...|.++|.||...= +.
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG------------------vi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG------------------VIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc------------------eEEecCceEEEecCccccccccc
Confidence 4999999999999999999876432 222211111111 12345566999999995321 21
Q ss_pred ------HHHhcccccceeEEEeeccCC
Q 000626 873 ------LRSRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~G 893 (1384)
.+...++.+|++++|+|++.+
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCcc
Confidence 222335669999999999753
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=92.61 Aligned_cols=64 Identities=17% Similarity=0.067 Sum_probs=37.9
Q ss_pred CCEEEEeCCCCcchhHH----HHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+...... ..+. ....+.++||+|++.+. ......+......+ .-=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 47999999996553221 2222 23467889999986432 12234444444433 235788999975
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=90.98 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCcc-hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000626 865 PGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 865 PGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
|||.. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|++.. .. +
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~~----~------ 66 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------AV----T------ 66 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------HH----H------
Confidence 88854 345566778899999999999876665444444444 36899999999998620 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
......+... .+++|++||.+|.|+..|+..|..+++.
T Consensus 67 ---------~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 67 ---------KQWLKYFEEK---------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---------HHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0011111111 1378999999999999999988776653
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=84.21 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
...|+|+|.+|+|||||+|+|++... ..+..+|.|.+...+ +.. .++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~--~~~-----------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI--TLM-----------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE--EcC-----------------CCEEEEECcCC
Confidence 34688999999999999999997654 455667766654322 211 35899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-05 Score=91.44 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+..+|+|+|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=85.69 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++... ..+..+|+|.++....+. .++.|+||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 345699999999999999999997654 566678888765443321 24899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.2e-05 Score=94.00 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccCceeE---eeeeeE----------ecccccccchhhccc-ccccC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQ---QIGATY----------FPAENIRERTRELKA-NATLK 855 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~g---e~gGITq---~iga~~----------~~~~~i~~~~~~i~~-~~~~~ 855 (1384)
+..+|+|+|..|+|||||+..|...-...+ ...-|+. .+|+.. +++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 346899999999999999998864211110 0011111 111100 00000000 000000 00233
Q ss_pred CCCEEEEeCCCCcchhHHH------HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r------~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||...+.... .+... ....+|||+++.+.... .+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 4679999999965433221 11112 34567888887643222 2334433333 3677999999974
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=73.56 Aligned_cols=75 Identities=31% Similarity=0.437 Sum_probs=60.4
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccC
Q 000626 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1342 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~ 1342 (1384)
+|+ +..+.|+.-+|..|+|++|.+|.+.... ..++|.||+.++.++++|..|+.|+|.|.+.+ . ++|..
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~-------~-~~i~~ 77 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVD-------A-KDLER 77 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCC-------H-HHcCC
Confidence 554 2234455559999999999999984332 47999999999999999999999999998753 2 58999
Q ss_pred CCeEEE
Q 000626 1343 EDELVS 1348 (1384)
Q Consensus 1343 ~d~l~s 1348 (1384)
||+|.|
T Consensus 78 G~vl~~ 83 (83)
T cd03696 78 GDVLSS 83 (83)
T ss_pred ccEEcC
Confidence 999875
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.7e-05 Score=87.24 Aligned_cols=126 Identities=25% Similarity=0.219 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEee-eeeEecccccccchhhccc--------------ccc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRERTRELKA--------------NAT 853 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~i-ga~~~~~~~i~~~~~~i~~--------------~~~ 853 (1384)
|+.+|.|.-|+||||||++|+... |-..+.|-|.++- +........+.+.+..+-| ...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 788999999999999999998543 2334444444441 1111111111111111110 001
Q ss_pred cCCCCEEEEeCCCCcch-------hH-HHHhcccccceeEEEeeccCCCCHHH---HHHHHHHHhcCCceEEEEeecccc
Q 000626 854 LKVPGLLVIDTPGHESF-------TN-LRSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F-------~~-~r~rg~~~aDiaILVVDa~~Gv~~QT---~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.++||-|-|...= .. ...+..-..|.+|-|||+.+...... .....++... =+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 22367999999995442 22 11222334688999999988655433 2333444444 38999999998
Q ss_pred c
Q 000626 923 Y 923 (1384)
Q Consensus 923 ~ 923 (1384)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 3
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.6e-05 Score=79.76 Aligned_cols=50 Identities=26% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeecccc
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 922 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl~ 922 (1384)
...+.+..||++|+|+|+.++...+......++... +.|+|+|+||+|++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 345678889999999999998877766777777665 89999999999986
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.9e-05 Score=88.81 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=55.4
Q ss_pred ccccceeEEEeeccCCC-CHHH-HHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000626 878 SGLCDIAILVVDIMHGL-EPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT-~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
+..+|++|||+|+.+.. .... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 47899999999997642 2222 34455567788999999999998521 00 00111
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...| ++++++||++|.||.+|+..|.
T Consensus 134 ~~~~~~~g---------------~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAIG---------------YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHCC---------------CeEEEEeCCCCccHHHHHhhcc
Confidence 11121111 4899999999999998887663
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.3e-05 Score=85.02 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++.+++|+|+.|+|||||+|.|+...
T Consensus 31 ~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 31 ELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44667889999999999999999999763
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.7e-05 Score=90.21 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCc--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-----
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gG--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----- 867 (1384)
+.|+|+|-+++|||||+++|+...+....++. |-...|..++|.......+.-..+.-.+....+.|+|.+|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 56899999999999999999988765444444 44566777777643333332223222233346999999993
Q ss_pred --cchhHHHHhcccccceeEEEeeccC
Q 000626 868 --ESFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 --e~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
+-..|.....++.+|.++.||++..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2345556666888999999999974
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.3e-05 Score=91.66 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCcchhH-HHH-----hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~-~r~-----rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl 921 (1384)
.+.+.||||||+..+.. ++. ..+..++.++||+|++.| ......+..... .++ .-|++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 35699999999554311 111 112356788999998754 223333333222 233 3578899995
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.1e-05 Score=88.16 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCCcch-hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000626 864 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 864 TPGHe~F-~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
-|||..= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... . .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~---~------ 68 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E---V------ 68 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H---H------
Confidence 4898543 344557788999999999998877655544444443 7899999999998620 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000626 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+......+... .++++++||.+|.|+..|+..|..+++.
T Consensus 69 ---------~~~~~~~~~~~---------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 69 ---------TKKWIEYFEEQ---------------GIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---------HHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00111112111 1478999999999999999988777654
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.5e-05 Score=79.90 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCcchh----HHHHhc--ccccceeEEEeeccCCCCHHHHHH-HHHHHhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFT----NLRSRG--SGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~----~~r~rg--~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||...+. ...... +..+|.+||||++..+. .+... +.++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 4568999999986432 211111 23489999999996543 33333 33444455 366788999986
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=80.82 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+.+.|+|+|++++|||||+++|++.. ...+..+|+|.+.....+. .+++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 45669999999999999999999765 3344445666654433221 35899999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.7e-05 Score=79.66 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.|+|+|.+++|||||+++|++... ......|.|.++..+.+ ..++.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCc
Confidence 599999999999999999997654 23333444444322111 125899999996
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.4e-05 Score=90.49 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhHHHH------hcccccceeEEEeeccCCCCHHHHHHHHHHH-hcCCceEEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~------rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiDl 921 (1384)
.+.+.||||||...+..... .....+|.++||+|++.| ........... ..++ .=|++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 34699999999544321111 123357889999999764 23333333333 2232 3567999995
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=88.02 Aligned_cols=68 Identities=21% Similarity=0.144 Sum_probs=52.1
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----------CCHHHHHHHHHHHh----cCCceEEEEeec
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKV 919 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKi 919 (1384)
....+.+||++|+..+...|..++..++++|+|||.++- -...++..+..+.. .++|+||++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 344588999999999999999999999999999999762 12233333333322 468999999999
Q ss_pred ccc
Q 000626 920 DRL 922 (1384)
Q Consensus 920 Dl~ 922 (1384)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 974
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=87.15 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccC-ceeE---eeeee----------EecccccccchhhcccccccCC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAG-GITQ---QIGAT----------YFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~g-GITq---~iga~----------~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
.++.+|+|+|++|+||||++.+|.... ...+... -++. .+++. .++...... ...+.....-..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDG 299 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCC
Confidence 345679999999999999999997422 1111100 0111 11100 000000000 000000001124
Q ss_pred CCEEEEeCCCCcchhH----HHHhcc-----cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTN----LRSRGS-----GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~----~r~rg~-----~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..... .+...+ ....-.+||+|++.+.. +....+......+ +-=+++||+|-.
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 5799999999754311 111111 12446889999987642 2233333333333 345778999975
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.1e-05 Score=83.49 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=52.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--ccccccc-CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t--~v~~ge~-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
+|+|+|+.++|||||||+|++. .+..+.. ...|..|-.+..++.. .....|+||||||..+.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5899999999999999999987 5443321 2233333333333321 01235999999995432
Q ss_pred ----hHHHHhccc--ccceeEEEeeccC
Q 000626 871 ----TNLRSRGSG--LCDIAILVVDIMH 892 (1384)
Q Consensus 871 ----~~~r~rg~~--~aDiaILVVDa~~ 892 (1384)
..++..++. .+|++|+.++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 222233333 4899988887753
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=70.30 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=62.4
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---cc
Q 000626 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~g 1091 (1384)
.||+++|.++|.+.|.|+++.|.|.+|+|+.||.|.+++++ .... |+++++++..+..| ..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~--------------V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGE--------------VKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEE--------------EEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987654 2333 44555555555433 44
Q ss_pred ceeeccccccccCCCceEEeCCC
Q 000626 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1092 v~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
+.+.+.+++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 77888887665555666666554
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=82.41 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV---------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v---------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTP 865 (1384)
..|+|+|.+|+|||||+++|++... .....+|+|.+.-.+.+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4599999999999999999997543 223334555543322221 148999999
Q ss_pred CC
Q 000626 866 GH 867 (1384)
Q Consensus 866 GH 867 (1384)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.69 E-value=8e-05 Score=78.20 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
...+.||||||..... ...+..+|.+|+|+... ...++..+.. .....--+++|||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe---~~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG---AGDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC---chhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 4579999999964322 34778899999998765 2223323222 233345689999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00033 Score=83.47 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=58.4
Q ss_pred ccccceeEEEeeccCCCCHHHHHHH-HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000626 878 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
+..+|.++||++....+.+..+.-| ..+...++|+|||+||+|++..+ . ... +....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~~---------------~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RAF---------------VNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HHH---------------HHHHH
Confidence 4568999999998777766655544 44556789999999999996310 0 000 01111
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+... .+++|+|||++|.||.+|+.+|..
T Consensus 176 ~~y~~~---------------g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNI---------------GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhC---------------CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 112111 148999999999999999988864
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00019 Score=82.57 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCceeEe---eee-------------eEecccccccchhhcccccccC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ---IGA-------------TYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-~gGITq~---iga-------------~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+.++|+|+|.+|+|||||+..|.......+. .+-|+.+ +++ .++...........+..-....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4578999999999999999988643211111 1111111 110 0000000000000000000112
Q ss_pred CCCEEEEeCCCCcchhHH----HH--hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+... +. ......|.++||++++.+- .+....++.....+ +-=|++||+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 357999999997643221 11 1233467889999986532 12223333333322 335789999975
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=85.41 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-----ccCceeEee---eee----------Eecccccccchhhccc-cc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGITQQI---GAT----------YFPAENIRERTRELKA-NA 852 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-----e~gGITq~i---ga~----------~~~~~~i~~~~~~i~~-~~ 852 (1384)
.++.+|+++|+.|+||||++..|...-.... ...-||.+. ++. -+|+..... ...+.. -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~-~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES-FKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-HHHHHHHHH
Confidence 3456899999999999999998863211110 001111111 000 000000000 000000 01
Q ss_pred ccCCCCEEEEeCCCCcchhH----HHHhcccc--cc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 853 TLKVPGLLVIDTPGHESFTN----LRSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~----~r~rg~~~--aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.+....+.||||||+..+.. .+...+.. ++ -.+||+|++.+..... +.+......+ +-=+++||+|-.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 22446799999999654322 11122222 23 5889999988732222 3333333222 345789999975
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00031 Score=85.22 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c-ccCc-eeEe---eeeeE----------ecccccccchhhcccccccCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQQ---IGATY----------FPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~-g-e~gG-ITq~---iga~~----------~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|+|+|..|+|||||+..|.+..+.. + ...+ |+.+ +|+.. ++.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45589999999999999999886532111 1 1111 1111 11100 000000000000000112345
Q ss_pred CCEEEEeCCCCcchhHHH----H--hcccccceeEEEeeccCCCCHHHHHH-HHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNLR----S--RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r----~--rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||+|........ . .......-.+||++++.+ .++... +......+ +-=+++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 679999999965432211 1 122334567899998753 333332 23333332 235788999975
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.5e-05 Score=86.38 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++..+ ..+..+|+|.++....+ . .++.||||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G-----------------KGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C-----------------CcEEEEECCCc
Confidence 345699999999999999999998764 55667888887643221 1 24899999996
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00037 Score=85.24 Aligned_cols=126 Identities=19% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc--cccc-cCceeEee---eee----------Eecccccccchhhccc-ccccCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV--QEGE-AGGITQQI---GAT----------YFPAENIRERTRELKA-NATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v--~~ge-~gGITq~i---ga~----------~~~~~~i~~~~~~i~~-~~~~~~ 856 (1384)
..+|+|+|+.|+||||++-.|..... ..+. ..-|+.+. |+. -+++...... ..+.. -..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~-~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP-KELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH-HhHHHHHHHhCC
Confidence 34799999999999999988864322 1111 11111111 100 0000000000 00000 001234
Q ss_pred CCEEEEeCCCCcchh----HHHHhc---ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFT----NLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~----~~r~rg---~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..+. ...... .....-++||++++.+. ......+..+...++ --|++||+|-.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 579999999975542 111111 22345678889886542 122233344443332 35889999975
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=84.45 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++.. ...+..+|+|.......+ . .++.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-----------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-----------------CCEEEEECCCc
Confidence 44669999999999999999999765 344566777766532221 1 24899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=86.07 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=58.6
Q ss_pred ccccceeEEEeeccCCCCHHHH-HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000626 878 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
+..+|.++||+++...+.+..+ .+|.++...++|.|||+||+||+.. .. ...
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--------~~-------------------~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--------AE-------------------EKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--------HH-------------------HHH
Confidence 4678999999999888887555 4566778889999999999999621 00 001
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000626 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1121111 23589999999999998887765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.59 E-value=4.7e-05 Score=91.21 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc------cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNV------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.|.|+|.+|+|||||+++|++... ..+..+|+|.++.. ++. ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~-----------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL-----------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe-----------------CCCCEEEECCCCCC
Confidence 599999999999999999997432 33444566655432 221 13478999999643
Q ss_pred hhHH---HH-------hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 870 FTNL---RS-------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 870 F~~~---r~-------rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+ +. .-.......+++++..+.+....+..+..+...+..|++++++-+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 3211 11 11122455667777665444333333444444567788888888876
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=78.08 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+.+.|+|+|.+++|||||+++|++..+ ..+...|+|.+...+.+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 345799999999999999999998664 233344555554332221 24899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00035 Score=95.38 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=68.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..+.-|-.+|||++|+||||||.+. +-.+.-... ..-+..++.+. +|+ .|-.....||||+|.
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-------------~c~-wwf~~~avliDtaG~ 171 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-------------NCD-WWFTDEAVLIDTAGR 171 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-------------ccc-eEecCCEEEEcCCCc
Confidence 3456688999999999999999986 222221110 00011111110 000 112235789999992
Q ss_pred c---------------chhHHHH--hcccccceeEEEeeccCCCC--HHHH-HH-------HHHHH---hcCCceEEEEe
Q 000626 868 E---------------SFTNLRS--RGSGLCDIAILVVDIMHGLE--PQTI-ES-------LNLLK---MRNTEFIVALN 917 (1384)
Q Consensus 868 e---------------~F~~~r~--rg~~~aDiaILVVDa~~Gv~--~QT~-E~-------l~llk---~~~vP~IVaIN 917 (1384)
. .|..+.. |--...|+|||+||+.+=+. ++.+ .+ |..+. ...+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1 2333332 33456899999999976432 2111 11 12121 23589999999
Q ss_pred ecccccC
Q 000626 918 KVDRLYG 924 (1384)
Q Consensus 918 KiDl~~~ 924 (1384)
|||++.+
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999865
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00036 Score=85.94 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
..||+|||+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 458999999999999999999753
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.7e-05 Score=81.60 Aligned_cols=125 Identities=23% Similarity=0.245 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee---------------eeEecccccccc-----hhhccccccc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG---------------ATYFPAENIRER-----TRELKANATL 854 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig---------------a~~~~~~~i~~~-----~~~i~~~~~~ 854 (1384)
|+++|.|..||||||||++|+.........+=|..++| ...+....+... ...+..-...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 89999999999999999999941111111111111111 111111111100 0000000112
Q ss_pred C--CCCEEEEeCCCCcchhHHH-----HhcccccceeEEEeeccCCCCHHHH--HHHHHHHhcCCceEEEEeecccc
Q 000626 855 K--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 855 ~--~~~i~~IDTPGHe~F~~~r-----~rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
. .+.+.||-|.|......++ .......+.+|.|||+.+-....+. .+..++.. -=+|++||+|++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEeccccC
Confidence 2 4689999999966655551 1122335889999999653111111 12233333 348999999997
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00054 Score=84.88 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEee-------ee---eEecc--cccccchh-----hccc-----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------GA---TYFPA--ENIRERTR-----ELKA----- 850 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~i-------ga---~~~~~--~~i~~~~~-----~i~~----- 850 (1384)
+...|+|.|.+.+||||++++|+...+-.+..+.+|.-. |. ...+. +.+.-.+. .+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 456799999999999999999997665544433333110 00 00000 00000000 0000
Q ss_pred -----c-------cccCCCCEEEEeCCCC---cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEE
Q 000626 851 -----N-------ATLKVPGLLVIDTPGH---ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 851 -----~-------~~~~~~~i~~IDTPGH---e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
. ..+--..|.+||.||. ..++.......-.+|++|||+.+-.-++..-..++..+...+-.++|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 0 0111125999999994 446666666667789999999987755544444555444443335567
Q ss_pred Eeecccc
Q 000626 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
.||.|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7777975
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00055 Score=73.56 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000626 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.|.|||||+.... .....+..+|.+|+|+.........+...+.++...++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 3567999999976433 33455788999999999887655667778888888899999999999963
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00083 Score=79.99 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+-|+.+|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4589999999999999999999853
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=85.72 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCc--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc---
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gG--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe--- 868 (1384)
..|+|+|.+++|||||+++|++..+ .....+. |...+|...++.......+.... ........+.|+|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccch
Confidence 3489999999999999999998876 4444343 44556666555432211111111 111222358999999942
Q ss_pred ----chhHHHHhcccccceeEEEeeccC
Q 000626 869 ----SFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 869 ----~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.+.+.....++.||++++||++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 255566667889999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0004 Score=89.17 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cCce---eEeeeeeE----------ecccccccchhhccc-ccccCC
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE--AGGI---TQQIGATY----------FPAENIRERTRELKA-NATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge--~gGI---Tq~iga~~----------~~~~~i~~~~~~i~~-~~~~~~ 856 (1384)
.-||+|||+.|+||||++..|..... ..+. ..-| |..+|+.. +++..... ...+.. -..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhcC
Confidence 34899999999999999999975432 1111 0111 12222210 00000000 000000 002334
Q ss_pred CCEEEEeCCCCcchhH-H---HH--hcccccceeEEEeeccCCCCHHHHH-HHHHHHhc-CC-ceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTN-L---RS--RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~-~---r~--rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~-~v-P~IVaINKiDl~ 922 (1384)
..+.||||||...... + .. ......+-++||+|++.+ .+++. .+...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 5799999999332211 1 11 112345678999999853 33332 22222221 11 234779999975
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00034 Score=81.37 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=56.6
Q ss_pred ccccceeEEEeeccCCC-CHHHHH-HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000626 878 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
+..+|++|||+|+.... .+..++ ++..+...++|+|||+||+|+... .. .. ..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~~----------------~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---EE----------------LE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---HH----------------HH
Confidence 67799999999998876 544443 445566788999999999999621 00 00 00
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+... .++++++||++|.||.+|+..|.
T Consensus 131 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALAL---------------GYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhC---------------CCeEEEEECCCCccHHHHHhhhc
Confidence 0001111 25899999999999988877664
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00043 Score=83.03 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=64.1
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++|..++......++++|+|||+.+-......+..+++ .+.|+|+|+||+|++..+ .. ...+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~-~~~~~-------- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VN-LSKIK-------- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CC-HHHHH--------
Confidence 567888888888899999999999764432222222222 268999999999997311 10 00000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.-+...+...|+. ...++++||++|.||.+|+..|..
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHH
Confidence 0111123333331 125889999999999999988754
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00032 Score=75.92 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=39.9
Q ss_pred CEEEEeCCCCcc-h-----hHHHHhccccc---ceeEEEeeccCCC-----CHHHHHHHHHHHhcCCceEEEEeeccccc
Q 000626 858 GLLVIDTPGHES-F-----TNLRSRGSGLC---DIAILVVDIMHGL-----EPQTIESLNLLKMRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 858 ~i~~IDTPGHe~-F-----~~~r~rg~~~a---DiaILVVDa~~Gv-----~~QT~E~l~llk~~~vP~IVaINKiDl~~ 923 (1384)
.++|+|+||+-. | .....+.+.+- =++|+++|+.--+ -......+..+..+.+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 599999999432 2 22223333331 2466777764321 12233444555567899999999999984
|
|
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=66.89 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=61.4
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|.|+.|..|++ +.+ ..++|.||+.++.++.+|..|+.|+|.|.+.+. ..+
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~--------~~v 79 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK--------KDI 79 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCH--------HHc
Confidence 3665 334567777999999999999987 555 579999999999999999999999999987542 357
Q ss_pred cCCCeEEE
Q 000626 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..||+|.+
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 78887754
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=86.40 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++|+|++|+|||||||+|++..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhcccc
Confidence 3468999999999999999998653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=85.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
+...+++|+|++|+|||||||+|+...
T Consensus 170 L~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 170 LRNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred hccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 344568999999999999999998643
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00057 Score=81.48 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEe---eeeeEecccccccchhhccc--------------ccc
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQ---IGATYFPAENIRERTRELKA--------------NAT 853 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~---iga~~~~~~~i~~~~~~i~~--------------~~~ 853 (1384)
..+|++||++|+||||.|-.|....+ .....+=||.+ ||+.. .+...+.-+.. -..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E----QLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE----QLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH----HHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 56799999999999999998863322 11112223332 23210 00000000000 112
Q ss_pred cCCCCEEEEeCCCCcchhHHH----Hhccc--ccceeEEEeeccCCCCHHHH-HHHHHHHhcCCceEEEEeecccc
Q 000626 854 LKVPGLLVIDTPGHESFTNLR----SRGSG--LCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r----~rg~~--~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+....+.||||.|+..+..+. ...+. ...-+.||++++. ...+. +.+......++- =+++||+|-.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 445689999999976543222 12222 2345668888764 22222 233333333322 3568999975
|
|
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00052 Score=65.55 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=58.8
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccce
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIK 1093 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~ 1093 (1384)
|+++|.++|.+.|.|+++.|+|.+|+|+.||.|.+++...... ..|+++++++..+..| ..+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~--------------~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLK--------------TTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCce--------------EEEEEEEECCcCCCEECCCCEEE
Confidence 5678999999999999999999999999999998876432222 3345555666666544 3477
Q ss_pred eeccccccccCCCceEEeC
Q 000626 1094 ITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1094 i~~~gL~~~~aG~~l~v~~ 1112 (1384)
+.+.+++......+++++.
T Consensus 67 l~l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 67 VLLRGVKREDVERGMVLAK 85 (87)
T ss_pred EEECCCCHHHcCCccEEec
Confidence 7778876544555565554
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00039 Score=76.23 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|.+||..|+|||+|=..+....++ +....|-|+++-...+.+- .+--|++||+.|++.|....
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl---------------Gnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL---------------GNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh---------------hhheeehhccCCcHHHHHHH
Confidence 4899999999999987766533222 1222333444332222110 11238899999999886543
Q ss_pred H-----hcccccceeEEEeeccCCCCHHHHH----HHHHHHhc--CCceEEEEeeccccc
Q 000626 875 S-----RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~-----rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~--~vP~IVaINKiDl~~ 923 (1384)
. .-++..+++|+|+|+...-..-.+. .|..+... ...+++.+.|||++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 3 4577889999999997643333333 34444433 246888999999973
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=82.59 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.+...|.|+|-+++|||||+|+|++... ..+..+|+|.++....+. .++.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 3445599999999999999999997664 566778888776433322 35899999993
|
|
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00073 Score=64.58 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=56.7
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC-Cc-eeEEeeeccCCCCCccceeceeeechhhhcc---ccc
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQG 1091 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~-g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a---a~g 1091 (1384)
|+++|.++|.+.|.|++++|+|.+|+|++||.+.+++.. +. ....| +++++++..+.. +..
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V--------------~sI~~~~~~~~~a~aGd~ 66 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTV--------------KSIHRNRSPVRVVRAGQS 66 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEE--------------EEEEECCeECCEECCCCE
Confidence 467899999999999999999999999999999988763 21 33444 445555555543 344
Q ss_pred ceeeccccccccCCCceEEe
Q 000626 1092 IKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1092 v~i~~~gL~~~~aG~~l~v~ 1111 (1384)
+.+.+++++......+++++
T Consensus 67 v~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 67 ASLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEEcCCCHHHcCCccEEe
Confidence 67777777654444455443
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00092 Score=63.26 Aligned_cols=78 Identities=13% Similarity=0.316 Sum_probs=54.2
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccc
Q 000626 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1092 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv 1092 (1384)
||+++|..+|.+. .|++++|.|.+|+|++||.|.+++++ ....|+ ++++++..+..| ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~--------------si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVK--------------SIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEE--------------EEEECCeECCEECCCCEE
Confidence 4788999999988 99999999999999999999988764 233444 445555444433 336
Q ss_pred eeeccccccccCCCceEE
Q 000626 1093 KITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1384)
.+.+.+++......+.++
T Consensus 64 ~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 64 RLKLKGIDEEDISPGDVL 81 (83)
T ss_pred EEEECCCCHHHCCCCCEE
Confidence 666777654333334333
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0025 Score=76.58 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=44.2
Q ss_pred CCEEEEeCCCCc-------------chhHHHHhcccccceeEEEeeccCCC-C---HHHHHHHHHHHhcCCceEEEEeec
Q 000626 857 PGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGL-E---PQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 857 ~~i~~IDTPGHe-------------~F~~~r~rg~~~aDiaILVVDa~~Gv-~---~QT~E~l~llk~~~vP~IVaINKi 919 (1384)
+.+.++|.||.. +...|...++..++.+||||- +|. . ...-.....+--+|...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 458999999942 234556677888999999983 222 1 112223345556788899999999
Q ss_pred ccc
Q 000626 920 DRL 922 (1384)
Q Consensus 920 Dl~ 922 (1384)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 986
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00028 Score=81.31 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
...+..-+.+++|++|+|||||+|+|..
T Consensus 159 ~~~l~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 159 AELLAGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHhhCc
Confidence 3456666899999999999999999985
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=68.08 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=64.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
++.+-|..|+||||+.-.|...-... |.+.- .+..+... . .+. ..+.|||||++... ...
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~----~~~~~----~vd~D~~~---~------~~~-yd~VIiD~p~~~~~--~~~ 61 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKL----GKRVL----LLDADLGL---A------NLD-YDYIIIDTGAGISD--NVL 61 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEE----EEECCCCC---C------CCC-CCEEEEECCCCCCH--HHH
Confidence 34556688999999988776432211 11111 11111000 0 000 46999999986443 334
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeeccc
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 921 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl 921 (1384)
..+..||.+|+|++.+..-...+...+..+... ..++.+++|+++.
T Consensus 62 ~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 62 DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 568889999999998754444556666666433 3578899999985
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00061 Score=71.58 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..|+++|.+++|||||+++|++.... .+...|.|.++....+ ...+.||||||.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 45899999999999999999865432 2334444433221111 125899999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00061 Score=78.64 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc-cchhhcccccccCCCCEEEEeCCCC----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGH---- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~-~~~~~i~~~~~~~~~~i~~IDTPGH---- 867 (1384)
.++.++|+|.+++|||||+++|+......+..+-.|++.....++....+ ..+..+......-.-.|+|+|+.|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 34569999999999999999999988877777777766544433332211 1111111110001124999999993
Q ss_pred ---cchhHHHHhcccccceeEEEeeccC
Q 000626 868 ---ESFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 ---e~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.-..|-....++.||.++-||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2244555566788999999998854
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00041 Score=78.88 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+...+++|+|++|+|||||+++|++.
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhh
Confidence 34457999999999999999999864
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.001 Score=70.90 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=47.6
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccc
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~ 922 (1384)
.+.||||||...+. ....+..||.+|+|++....-...+...+..+...+.+ +.|++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999999865543 34557889999999998776666666677777766654 56899999853
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00077 Score=79.51 Aligned_cols=124 Identities=22% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEee--------eeeEecccccccchhhcccc-------
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI--------GATYFPAENIRERTRELKAN------- 851 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~i--------ga~~~~~~~i~~~~~~i~~~------- 851 (1384)
+-|+.+|.|..|+||||||++|+... |...+.|.+..+- ....+...++. .++..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiC---Cs~~~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCIC---CSRSNELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEE---EccCchHHHHHHH
Confidence 45899999999999999999998531 1122222221110 00111111110 011000
Q ss_pred c--cc----CCCCEEEEeCCCCcchhHHHHhc--------ccccceeEEEeeccCCCCHHH--HHHHHHHHhcCCceEEE
Q 000626 852 A--TL----KVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 852 ~--~~----~~~~i~~IDTPGHe~F~~~r~rg--------~~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVa 915 (1384)
. .+ ..+...||.|.|..+-..+.... .-..+.+|.|||+.+...... .....++... =+|+
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~Iv 156 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRIL 156 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEE
Confidence 0 00 13678999999977544333221 123588999999987532111 1122333333 4899
Q ss_pred Eeecccc
Q 000626 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
+||+|++
T Consensus 157 lnK~Dl~ 163 (318)
T PRK11537 157 LTKTDVA 163 (318)
T ss_pred EeccccC
Confidence 9999997
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=58.75 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEE
Q 000626 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1347 (1384)
Q Consensus 1268 ~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~ 1347 (1384)
..+.|+.|+|.+|+|++|..|.+......+.++|.+|.+.+..+..+..|+.|+|.+...+ ++..||.|.
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~----------~~~~g~~l~ 82 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD----------DIKIGDTLT 82 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc----------ccCCCCEec
Confidence 4578999999999999999999854233567899999999999999999999999986431 577777763
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00085 Score=76.92 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=41.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
+.|.|+|-+++|||||+++++... ...|..+|+|+.++..+.-.+ .+.+.+|||||
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~----------------rp~vy~iDTPG 205 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH----------------RPPVYLIDTPG 205 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc----------------CCceEEecCCC
Confidence 569999999999999999997432 345667888888765332211 24599999999
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=78.74 Aligned_cols=123 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-----------cccc------CceeEeeeeeEecccccccchhhc-cc---c
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-----------EGEA------GGITQQIGATYFPAENIRERTREL-KA---N 851 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~-----------~ge~------gGITq~iga~~~~~~~i~~~~~~i-~~---~ 851 (1384)
++-+|.++|--|+||||.+..|...-.. .++. ..+..+++..+|+...... ...+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~-Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD-PVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC-HHHHHHHHHHH
Confidence 3457889999999999999887532110 1111 1123456666665421110 0111 00 1
Q ss_pred cccCCCCEEEEeCCCCcch----hH-H-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCce-EEEEeeccc
Q 000626 852 ATLKVPGLLVIDTPGHESF----TN-L-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F----~~-~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~-IVaINKiDl 921 (1384)
+......+.||||.|.... .. + .......+|=+|||||++-|-. ..+.++.+ .+++ =|+|||+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccC
Confidence 1122357999999993332 11 1 1244556899999999998732 22233322 2454 378999995
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0008 Score=78.31 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.+++.+++|+|++|+|||||++.|++..
T Consensus 158 ~L~~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 158 YLKGKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred hhccceEEEECCCCCCHHHHHHHHhchh
Confidence 3455679999999999999999998754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=59.93 Aligned_cols=77 Identities=14% Similarity=0.310 Sum_probs=51.9
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcc---cccc
Q 000626 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGI 1092 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a---a~gv 1092 (1384)
||+++|.++|.. .|+++.|+|.+|+|++||.|.+++++ ....|+ ++++++..+.. +..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~--------------si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--TQVEVL--------------SIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--cEEEEE--------------EEEECCEECCEECCCCEE
Confidence 478899998865 38999999999999999999988764 233444 44455444443 3446
Q ss_pred eeeccccccccCCCceEE
Q 000626 1093 KITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1384)
.+.+.+++......+.++
T Consensus 63 ~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 63 RLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEecCCCHHHCCCCCEE
Confidence 677777655433344443
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.001 Score=77.94 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999998653
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0031 Score=69.60 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH--
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~-- 872 (1384)
|.|.+|||--+||||+-....+..-+ .+ |.-+-.+ ..+ +.. ......-.+.+||.||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP-ne----TlflEST----ski---~~d---~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP-NE----TLFLEST----SKI---TRD---HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC-Cc----eeEeecc----Ccc---cHh---hhhhhhcceEEeecCCccccCCCc
Confidence 45999999999999987665443211 11 1100000 000 000 0000112488999999877632
Q ss_pred -HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcC----CceEEEEeecccc
Q 000626 873 -LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRL 922 (1384)
Q Consensus 873 -~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiDl~ 922 (1384)
-..+-++.|-..|+|||+.+.. .+-|.-++...+.++ +.|=|+|.|+|-+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 2234467788999999997643 355566666666654 5688999999976
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=76.21 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----------CCHHHHHHHHHHHh----cCCceEEEEeecc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKiD 920 (1384)
...+.|||++|+..+...|..++..++++|+|||+++- -...++..+..+.. .++|+||++||+|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 34589999999999999999999999999999999862 22344444444433 4689999999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000626 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
+... .....++...+...... ..+.....-|...|....-+ ..+..+.++.|+|..-.+|..+++.+.
T Consensus 263 ~~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 263 LFEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hHHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHH
Confidence 7421 00001111100000000 01112222333333322110 023457788899999998888887765
Q ss_pred HHH
Q 000626 1001 QWT 1003 (1384)
Q Consensus 1001 ~~~ 1003 (1384)
..+
T Consensus 331 ~~I 333 (342)
T smart00275 331 DII 333 (342)
T ss_pred HHH
Confidence 443
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0021 Score=71.27 Aligned_cols=62 Identities=27% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCEEEEeCC-CCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC-CceEEEEeeccc
Q 000626 857 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTP-GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiDl 921 (1384)
..+.|+||= |.+.|.. +-...+|++|+|||.+.--.......-.+....+ .++.|++||+|-
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 568999995 7777763 3346799999999987533333334445666788 789999999995
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0035 Score=59.26 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=50.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc---ccccce
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIK 1093 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~---aa~gv~ 1093 (1384)
|+++|.++|.+.|.|+++.|.|.+|+|++|+.|.+.+++ ..+.|+ ++++++..+. ++..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~--------------sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVR--------------SIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEE--------------EEEECCcCcCEEcCCCEEE
Confidence 578899999999999999999999999999999987653 334444 4445555444 333466
Q ss_pred eeccccc
Q 000626 1094 ITAQGLE 1100 (1384)
Q Consensus 1094 i~~~gL~ 1100 (1384)
+.+.++.
T Consensus 65 i~l~~~~ 71 (83)
T cd03696 65 LNLTGVD 71 (83)
T ss_pred EEEcCCC
Confidence 6666654
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0024 Score=61.11 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=59.7
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEee-cCC-ceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~-~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
+|+ +..+.|+.-+|..|.|++|..+.+ +.+ ..-+..+|.||+.++..+.+|..|+.|+|.|.+.+. .++
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 79 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR--------SLL 79 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH--------HHc
Confidence 564 345667777999999999999987 442 112478999999999999999999999999987643 256
Q ss_pred cCCCeEE
Q 000626 1341 DIEDELV 1347 (1384)
Q Consensus 1341 ~~~d~l~ 1347 (1384)
..|++|.
T Consensus 80 ~~G~vl~ 86 (87)
T cd03694 80 RKGMVLV 86 (87)
T ss_pred CCccEEe
Confidence 6677774
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0031 Score=59.65 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=58.3
Q ss_pred cccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccC
Q 000626 1264 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1342 (1384)
Q Consensus 1264 vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~ 1342 (1384)
+|+...+.|+.-+|..|+|++|..|.+ +.+ ...+|.||+.++.++++|..|+.|+|.|.+.+. ..+..
T Consensus 9 v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~--------~~v~~ 77 (83)
T cd03698 9 KYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDE--------EDISP 77 (83)
T ss_pred EEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEECCCCH--------HHCCC
Confidence 554225567777999999999999987 555 358999999999999999999999999987542 24667
Q ss_pred CCeEE
Q 000626 1343 EDELV 1347 (1384)
Q Consensus 1343 ~d~l~ 1347 (1384)
||+|.
T Consensus 78 G~vl~ 82 (83)
T cd03698 78 GDVLC 82 (83)
T ss_pred CCEEe
Confidence 78774
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=79.76 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
..|.|+|.+|+|||||+|+|+... +..+..+|+|.++- .++.. .+..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLD-----------------DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcC-----------------CCcEEEECCCcc
Confidence 359999999999999999998542 12334455554432 12211 246899999963
|
|
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0035 Score=59.21 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=58.4
Q ss_pred ccccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000626 1263 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1263 ~vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
.+|+.. +.|+.-+|..|.|++|..|.+ +.+ ...+|.||+.++..+.+|..|+-|+|.|.+.+. .++.
T Consensus 8 ~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~--------~~v~ 75 (82)
T cd04089 8 DKYKDM-GTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEE--------EDIS 75 (82)
T ss_pred eEEEcC-CEEEEEEEeeeEEecCCEEEEeCCC---cEEEEEEEEECCEECCEECCCCEEEEEecCCCH--------HHCC
Confidence 356533 556666999999999999987 555 358899999999999999999999999987542 2567
Q ss_pred CCCeEE
Q 000626 1342 IEDELV 1347 (1384)
Q Consensus 1342 ~~d~l~ 1347 (1384)
.||+|.
T Consensus 76 ~G~vl~ 81 (82)
T cd04089 76 PGFVLC 81 (82)
T ss_pred CCCEEe
Confidence 788774
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.003 Score=70.85 Aligned_cols=118 Identities=17% Similarity=0.259 Sum_probs=67.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccC----ceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCC
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~g----GITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTP 865 (1384)
..--+.+|.-+|..|.|||||++.|.++++...... ++..+...+.+.-.+++ -.|+|+||-
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tv 103 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTV 103 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeec
Confidence 344455688889999999999999999987654322 22111111111111111 249999999
Q ss_pred CCcc------------------hhHH-----------HHhcccccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEE
Q 000626 866 GHES------------------FTNL-----------RSRGSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 866 GHe~------------------F~~~-----------r~rg~~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
|+-+ |.+. ....-+..+++++.|..+ ||+....+-.+..|. .++.+|.+
T Consensus 104 GfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPv 182 (406)
T KOG3859|consen 104 GFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPV 182 (406)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHH
Confidence 9532 1111 111123356788888764 454443333333332 24678888
Q ss_pred Eeecccc
Q 000626 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
|-|.|.+
T Consensus 183 IAKaDti 189 (406)
T KOG3859|consen 183 IAKADTI 189 (406)
T ss_pred HHHhhhh
Confidence 8899976
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00066 Score=81.96 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=47.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC--Ccchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--HESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG--He~F~ 871 (1384)
.+|++||.+++||||+||+|.+.. |....++|-|.|+.++++. +.+.|.|||| +.+|+
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 569999999999999999999865 5567788889888766654 4589999999 44555
Q ss_pred H
Q 000626 872 N 872 (1384)
Q Consensus 872 ~ 872 (1384)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 4
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0023 Score=63.55 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|+.|+|||+|+.++....+... ..+ ..+| |.....
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 489999999999999999964433211 000 0111 233334
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHH---hcCCceEEEEeecccc
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLK---MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk---~~~vP~IVaINKiDl~ 922 (1384)
...+.++.+++|.+....-..... ++..+. ...+|++++.||+|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~-~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK-NVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH-hHHHHHhcCCCCCcEEEEeechhhH
Confidence 455667888887776552211111 122222 2347889999999974
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0045 Score=66.06 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~ 922 (1384)
...+.|||||+...-.......+..+|.+|+|+.....-...+...+..+...+++++ +++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 4579999999874322121111367899999998877666778888999999998865 789999864
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0069 Score=81.08 Aligned_cols=117 Identities=22% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG---- 866 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG---- 866 (1384)
.-|=-+|||++|+||||+|...- -++...+..+-. ..+|+.++ + .|-...-.+|||.|
T Consensus 124 eLPWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~c--------------d-wwf~deaVlIDtaGry~~ 187 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNC--------------D-WWFTDEAVLIDTAGRYIT 187 (1188)
T ss_pred cCCceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCccc--------------C-cccccceEEEcCCcceec
Confidence 34557899999999999986532 122211111100 01111111 1 12223578999999
Q ss_pred C--cc---------hhHH--HHhcccccceeEEEeeccCCC--CHHHH-HHHHHHH----------hcCCceEEEEeecc
Q 000626 867 H--ES---------FTNL--RSRGSGLCDIAILVVDIMHGL--EPQTI-ESLNLLK----------MRNTEFIVALNKVD 920 (1384)
Q Consensus 867 H--e~---------F~~~--r~rg~~~aDiaILVVDa~~Gv--~~QT~-E~l~llk----------~~~vP~IVaINKiD 920 (1384)
| .+ |..+ ..|...-.|+|||.+|+.+-. .++-+ .+.+.|+ ...+|+.|++||+|
T Consensus 188 q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~D 267 (1188)
T COG3523 188 QDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKAD 267 (1188)
T ss_pred ccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccc
Confidence 3 22 2222 335567789999999997733 23333 2222222 23579999999999
Q ss_pred cccCc
Q 000626 921 RLYGW 925 (1384)
Q Consensus 921 l~~~w 925 (1384)
++++|
T Consensus 268 ll~GF 272 (1188)
T COG3523 268 LLPGF 272 (1188)
T ss_pred ccccH
Confidence 99763
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0058 Score=73.61 Aligned_cols=99 Identities=27% Similarity=0.373 Sum_probs=57.7
Q ss_pred cchhHHHHhcccccc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000626 868 ESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 868 e~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.+|...+ ..+...| ++++|||+.+-... ....|..+. .+.|+|+|+||+|++.. ... ..
T Consensus 57 ~~~~~~l-~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~-----~~~-~~----------- 116 (365)
T PRK13796 57 DDFLKLL-NGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPK-----SVK-KN----------- 116 (365)
T ss_pred HHHHHHH-HhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCC-----ccC-HH-----------
Confidence 3566644 4445455 99999999874322 222222222 26899999999999631 100 00
Q ss_pred HHHHHHHH-HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000626 947 EFNMRLVQ-IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~-I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+.. +...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 117 ----~i~~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 117 ----KVKNWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----HHHHHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011 11112223321 1268999999999999999888653
|
|
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0068 Score=57.23 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=34.7
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
|+++|.++|...+.|+.++|.|.+|.|++||.|.+++.+
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~ 39 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG 39 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC
Confidence 578999999888888889999999999999999988654
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=72.14 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=5.7
Q ss_pred eeeeEEeecCcc
Q 000626 1165 KIPVSGISIGPV 1176 (1384)
Q Consensus 1165 ~i~i~~~~vG~v 1176 (1384)
.+|+...|-|..
T Consensus 958 ~r~~~q~gs~Tp 969 (1118)
T KOG1029|consen 958 VRPKDQEGSGTP 969 (1118)
T ss_pred eeehhccCCCCC
Confidence 344445555544
|
|
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0033 Score=60.08 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+-.+|..|+|+.|..|++. .+. -...+|.||+.+++++.+|..|+.|+|.|.+.+. ..+
T Consensus 7 ~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~--------~~v 77 (87)
T cd03697 7 DVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKR--------EDV 77 (87)
T ss_pred EEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCH--------HHc
Confidence 3555 3345566669999999999999873 221 2468999999999999999999999999987542 245
Q ss_pred cCCCeEE
Q 000626 1341 DIEDELV 1347 (1384)
Q Consensus 1341 ~~~d~l~ 1347 (1384)
.-|++|.
T Consensus 78 ~rG~vl~ 84 (87)
T cd03697 78 ERGMVLA 84 (87)
T ss_pred CCccEEe
Confidence 6677774
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0059 Score=60.43 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=43.0
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC----ceEEEEee
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 918 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v----P~IVaINK 918 (1384)
.+.|||||+..... ....+..||.+|+|++.+..-...+...+.+++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975543 3456788999999998876555666667777666553 56688885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0043 Score=68.61 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCcch------hHHHHhcccccce---eEEEeeccCCCCHHHH-----HHHHHHHhcCCceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESF------TNLRSRGSGLCDI---AILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F------~~~r~rg~~~aDi---aILVVDa~~Gv~~QT~-----E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.++.|+|+||+..| .+...+.+...|+ +|-+||+.--..|... -++.-+.....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 47999999995442 2222233333343 4455565332233322 22333445678999999999986
Q ss_pred c
Q 000626 923 Y 923 (1384)
Q Consensus 923 ~ 923 (1384)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
|
|
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=56.36 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=55.2
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeechhhhcccccceee
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1095 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~ 1095 (1384)
|++.|+.+.+.+..|.++.++|++|+|++||.|.++..+... ..+|..|+.+..... ....+ +.+|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~-------~~v~~--~~aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKR-------VEVEE--AEAGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCe-------eECcE--ECCCCEEE
Confidence 468899999999999999999999999999999877653211 123333322211111 11122 23566778
Q ss_pred ccccccccCCCce
Q 000626 1096 AQGLEHAIAGTGL 1108 (1384)
Q Consensus 1096 ~~gL~~~~aG~~l 1108 (1384)
+.||..+.+|+++
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 8899888888876
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.005 Score=72.83 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=53.0
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC--------C---CHHHHHHHHHHHh----cCCceEEEE
Q 000626 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------L---EPQTIESLNLLKM----RNTEFIVAL 916 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G--------v---~~QT~E~l~llk~----~~vP~IVaI 916 (1384)
+.++...+-++|++|+.+=..-|...+-.++++|+||+.++= . +..++..+..+.. .+++||+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 345566799999999988888888999999999999998641 1 2233333333333 368999999
Q ss_pred eecccc
Q 000626 917 NKVDRL 922 (1384)
Q Consensus 917 NKiDl~ 922 (1384)
||+|+.
T Consensus 270 NK~DLF 275 (354)
T KOG0082|consen 270 NKKDLF 275 (354)
T ss_pred ecHHHH
Confidence 999984
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=64.68 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=25.8
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000626 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 787 ~s~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+...-|-|+-.|.|..|+||||||++|+.
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHc
Confidence 445567888899999999999999999984
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0069 Score=65.02 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.1
Q ss_pred hcccccceeEEEee---ccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000626 876 RGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 876 rg~~~aDiaILVVD---a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
..+..+++ ||+| ..+...++..+.+..+...+.|+|+++|+..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 33445666 7888 6667778888888888888999999999853
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0069 Score=57.04 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-H
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~-r 874 (1384)
+|+|.|..|+||||+...|...-...+. ++ ..+. .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~------~v--~~~~--------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGK------RV--LLID--------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC------eE--EEEC--------------------CEEEEeCCCCccchhhhh
Confidence 4788999999999999988643211110 00 0110 3899999987554432 2
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEe
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 917 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaIN 917 (1384)
...+..+|.+++|++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456678999999988765443333332 222223456667766
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0087 Score=56.98 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=56.9
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccccccee
Q 000626 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKI 1094 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i 1094 (1384)
.||.+.|+.+.+.+..|.++.++|++|+|+.|+.|.+.. + ...+|..|+.+.......+ . .+..|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~-~~~~v~~l~~~~g~~~~~v-------~--~~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR--E-EKIKITELRVFNNGEVVTA-------D--TVTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC--C-cEEEeceeEEEeCCCeEEC-------c--EECCCCEE
Confidence 468899999999999999999999999999999986554 1 1123333332222111111 1 13457788
Q ss_pred eccccccccCCCce
Q 000626 1095 TAQGLEHAIAGTGL 1108 (1384)
Q Consensus 1095 ~~~gL~~~~aG~~l 1108 (1384)
++.||..+.+|++|
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 88999988888876
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.008 Score=58.67 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred EEEEEc-CCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000626 796 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlG-hvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+|+|+| ..|+||||+.-.|...-... |. . ...+..+. . ..+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~----~~--~--vl~~d~d~--------------~-~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARR----GK--R--VLLIDLDP--------------Q-YDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhC----CC--c--EEEEeCCC--------------C-CCEEEEeCcCCCCHH--H
Confidence 366777 77999999988876432211 10 1 11111110 0 358999999975433 3
Q ss_pred HhcccccceeEEEeeccCC
Q 000626 875 SRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G 893 (1384)
...+..||.+|++++.+..
T Consensus 56 ~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 56 RNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHCCEEEEeccCCHH
Confidence 3667789999999987653
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0082 Score=70.07 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.-++.+|+|+|-.|+||||.+..|.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHH
Confidence 456778999999999999999998743
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.028 Score=70.08 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000626 537 ERLRKEEEERKRLEELER 554 (1384)
Q Consensus 537 E~~~~eeEe~~~~eeeer 554 (1384)
-++.|+||++++++++|+
T Consensus 383 iE~qrEEerkkeie~rEa 400 (1118)
T KOG1029|consen 383 IERQREEERKKEIERREA 400 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0073 Score=65.15 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.5
Q ss_pred ceeEEEeeccCCCCHHHHHHHHH--HHhcCCceEEEEeecccc
Q 000626 882 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l~l--lk~~~vP~IVaINKiDl~ 922 (1384)
|++|+|||+...+.......+.+ +...+.|+|+|+||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 79999999998776665555555 555678999999999997
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0078 Score=55.27 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.4
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCC---ceeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccc-ccCCC
Q 000626 1031 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1106 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g---~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~-~~aG~ 1106 (1384)
|++++++|++|+|+.||.|++++... +...+|+.|+.++......+ ..+..|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~---------~~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAV---------AGANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEE---------TTEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeC---------CceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999966221 34577777776543211111 1234578888889998 58888
Q ss_pred ce
Q 000626 1107 GL 1108 (1384)
Q Consensus 1107 ~l 1108 (1384)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.012 Score=55.51 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=52.3
Q ss_pred EEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEE
Q 000626 1272 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1347 (1384)
Q Consensus 1272 IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~ 1347 (1384)
++..+|..|.|++|..|.+.... ...+|.||+.++.++++|..|+-|+|.|.+. .++..||+|.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~----------~~i~~G~vl~ 80 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG--KTSRVKSIETFDGELDEAGAGESVTLTLEDE----------IDVSRGDVIV 80 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC--CeEEEEEEEECCcEeCEEcCCCEEEEEECCc----------cccCCCCEEe
Confidence 45559999999999999874332 3589999999999999999999999999742 2577788774
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.008 Score=55.19 Aligned_cols=70 Identities=23% Similarity=0.131 Sum_probs=57.4
Q ss_pred CeEEEEEEeeceEecCCCEee-c-C-CceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccc-ccCCCe
Q 000626 1270 PIVLGVDVVEGIAKVGTPICI-P-Q-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH-FDIEDE 1345 (1384)
Q Consensus 1270 ~~IaG~~V~~G~l~~g~~~~v-~-~-~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~-f~~~d~ 1345 (1384)
+.|+.++|.+|+|++|..|.+ + + +.-...++|.+|..++..+.++..|..||+.+...+. .+ +..||+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~--------~~~i~~Gdt 72 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGL--------NDAIRRGDT 72 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSG--------CSCSSTTEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCC--------CCCcCcCCE
Confidence 368999999999999999998 2 1 1223669999999999999999999999999887542 35 688888
Q ss_pred EE
Q 000626 1346 LV 1347 (1384)
Q Consensus 1346 l~ 1347 (1384)
|+
T Consensus 73 l~ 74 (74)
T PF03144_consen 73 LT 74 (74)
T ss_dssp EE
T ss_pred EC
Confidence 85
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.021 Score=66.22 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=72.9
Q ss_pred ccccceeEEEeeccCC-CCHHHH-HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000626 878 SGLCDIAILVVDIMHG-LEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~G-v~~QT~-E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
....|-+||||.+.++ +...-+ .+|-++...++..||||||+|++.. .... . ...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~~---------------~--~~~ 133 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEAA---------------V--KEL 133 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHHH---------------H--HHH
Confidence 3346777888887664 333333 4556667789999999999999731 1110 0 112
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH----------HHHHHHhhhcccccc-eEEEEE
Q 000626 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1024 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~----------~~~l~e~l~~~~~~~-~~VlEv 1024 (1384)
...+...| ++++.+|+++++|+..|...|...+ -.+|+.+|.+....+ +.|.+
T Consensus 134 ~~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~- 197 (301)
T COG1162 134 LREYEDIG---------------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE- 197 (301)
T ss_pred HHHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc-
Confidence 22222233 5899999999999999888775443 135555555533322 12222
Q ss_pred EEEcCcceEEEEEEE
Q 000626 1025 KVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~ 1039 (1384)
..-.|+.||-...++
T Consensus 198 ~~~rGkHTTt~~~l~ 212 (301)
T COG1162 198 KLGRGRHTTTHVELF 212 (301)
T ss_pred cCCCCCCccceEEEE
Confidence 333566676666554
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.002 Score=67.08 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
|+|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.011 Score=66.67 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl 921 (1384)
...+.|||||+...+. ....+..+|.+|+|++....-...+...+.++...++++ .|++|+++.
T Consensus 108 ~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 3579999999865543 334566899999999987554455666666777777775 589999985
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.014 Score=71.88 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|.|+|.-++|||.||.++++..+..+..+.++..+....+.... ....+.+-|.+-. ....+...
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g--------------~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG--------------QQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc--------------ccceEEEeecCcc-ccccccCc
Confidence 78999999999999999998776653333222222111111110 0022555555532 22222222
Q ss_pred cccccceeEEEeeccCCCCHHHHHHHHHH-----HhcCCceEEEEeecccc
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~ll-----k~~~vP~IVaINKiDl~ 922 (1384)
-..||+++||+|.+... ...++..+ ....+|+++|.+|+|+-
T Consensus 493 -e~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 -EAACDVACLVYDSSNPR---SFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -cceeeeEEEecccCCch---HHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 26799999999998533 33332211 12679999999999985
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.028 Score=74.81 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=13.5
Q ss_pred eCCCCCHHHHH-HHHHhCCeEEEcchHHHHH
Q 000626 1200 FDVKVTPEARE-LAEELGVKIFIADIIYHLF 1229 (1384)
Q Consensus 1200 FnVkv~~~a~~-~A~~~gV~I~~~~IIY~L~ 1229 (1384)
||++-...... -|+-.+--.+....||.|-
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1021)
T PTZ00266 978 YNAKKEYHDEEERAELANSYTLQKRNMYALK 1008 (1021)
T ss_pred cchhhhcchhhhhhhccccceeeccchHHHH
Confidence 55554333322 2333334444555566654
|
|
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=54.60 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecc
Q 000626 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~ 1097 (1384)
.+.|+.+.+.+..|.++.++|++|+|++||.|.+++... ..+|..|+.+.+.....+ . .+.+|..+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v-------~--~~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEV-------E--EAGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceEC-------C--EeCCCCEEEEE
Confidence 467888888888999999999999999999998776432 123333332332221111 1 13457778888
Q ss_pred ccccccCCCce
Q 000626 1098 GLEHAIAGTGL 1108 (1384)
Q Consensus 1098 gL~~~~aG~~l 1108 (1384)
|+..+.+|+++
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 99888888876
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.004 Score=62.91 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc---cchhhcccccccCCCCEEEEeCCCCcchh
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR---ERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~---~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
-+++|.|.+|+|||+|+.++............ ++...++...... .....+.......... ......+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 45899999999999999999864322111000 1222222211111 1111110011111111 11122333
Q ss_pred HHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHH-hcCCceEEEEee
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 918 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk-~~~vP~IVaINK 918 (1384)
......+......|||||-.+.+ ...+.+.|..+. ..++++|++.+-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44455555555689999988777 666666665554 345788887754
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.015 Score=63.90 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCC---HHHHHHHHHHHhc--CCce-EEEEeeccc
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~-IVaINKiDl 921 (1384)
..+.||||||. +..+....+..+|.+|+++..+.--. .++...+..+... +.|. .|++|+.+.
T Consensus 77 ~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 77 YDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 47999999997 34555667889999999998765322 2333333333222 4554 466676653
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0036 Score=73.83 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.|||+|+.|+||||||..|++.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999864
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.013 Score=70.37 Aligned_cols=132 Identities=21% Similarity=0.214 Sum_probs=71.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----------cCceeE---------eeeeeEecc-cc-c-ccchhh
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQ---------QIGATYFPA-EN-I-RERTRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----------~gGITq---------~iga~~~~~-~~-i-~~~~~~ 847 (1384)
+-||.+|+|||-.|+||||-|-.|.++-.+..- .|.|-| .++.++++. +. . ..-+..
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 448999999999999999999999765333221 111110 000111110 00 0 000000
Q ss_pred ccc---ccccCCCCEEEEeCCC--CcchhHHHH----hcccccceeEEEeeccCCCC--HHHHHHHHHHHhcCCceE---
Q 000626 848 LKA---NATLKVPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEFI--- 913 (1384)
Q Consensus 848 i~~---~~~~~~~~i~~IDTPG--He~F~~~r~----rg~~~aDiaILVVDa~~Gv~--~QT~E~l~llk~~~vP~I--- 913 (1384)
... ....+...+.||||.| |.+-.-|+. .-+..+|.+|+|--|--|-. .|...+-..+..+..|..
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 000 0122345699999999 433222221 12456899999987755532 344444444555555543
Q ss_pred EEEeecccc
Q 000626 914 VALNKVDRL 922 (1384)
Q Consensus 914 VaINKiDl~ 922 (1384)
|+|+|+|.+
T Consensus 535 ~~ltk~dtv 543 (587)
T KOG0781|consen 535 ILLTKFDTV 543 (587)
T ss_pred EEEEeccch
Confidence 689999986
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0092 Score=67.40 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHH------hcCCceEEEEeecc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk------~~~vP~IVaINKiD 920 (1384)
.+.+.||||||+.. .+....+..||++|+.+..+.--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 35799999999865 33455678899999888765432233334443332 23678899999987
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.028 Score=68.52 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=63.2
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000626 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|-.+.|.. +|+ ...+.|+..+|..|+|+.|..|.+. .+. -...+|.||+.++.+|++|..|+-|||.|.+.+.
T Consensus 210 p~r~~I~~--~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~-- 284 (394)
T PRK12736 210 PFLMPVED--VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR-- 284 (394)
T ss_pred CeEEEEEE--EEecCCcEEEEEEEEeecEEecCCEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcH--
Confidence 33444443 665 4567899999999999999999874 222 2357999999999999999999999999987542
Q ss_pred hhccccccccCCCeEEE
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
..+..||+|..
T Consensus 285 ------~~i~~G~vl~~ 295 (394)
T PRK12736 285 ------DEVERGQVLAK 295 (394)
T ss_pred ------HhCCcceEEec
Confidence 24666777743
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.048 Score=49.45 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=39.4
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeecc
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll 1066 (1384)
+.+.|..++.+.+.|.++.++|.+|+|++|+.+.+++.......+|+.|.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~ 50 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLK 50 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeE
Confidence 35788999999999999999999999999999988764333344555554
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.011 Score=69.44 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
..-++-||.++|--|+||||.+..|.+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 445677899999999999999988863
|
|
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.032 Score=52.71 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=53.4
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeec
Q 000626 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~ 1096 (1384)
.+.|+.+.+.+..|..+.++|++|+|+.||.|.++.... ..+|..|..++.... .++. +.+|..+++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~----------~~v~~~~aGdI~~i 69 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY----------QEIPSLSAGNIGVI 69 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc----------eECCeeCCCCEEEE
Confidence 467888888899999999999999999999997665431 122323322211111 1122 335777778
Q ss_pred cccccccCCCceE
Q 000626 1097 QGLEHAIAGTGLY 1109 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~ 1109 (1384)
.||+.+.+|+++.
T Consensus 70 ~gl~~~~~Gdtl~ 82 (83)
T cd04092 70 TGLKQTRTGDTLV 82 (83)
T ss_pred ECCCCcccCCEEe
Confidence 8998888888764
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.021 Score=66.08 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.||.|+|.-|+||||||..|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 478999999999999999987543
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.043 Score=63.02 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCH---HHHHHHHHH-HhcCCceE-EEEeeccc
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP---QTIESLNLL-KMRNTEFI-VALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~---QT~E~l~ll-k~~~vP~I-VaINKiDl 921 (1384)
+.+.||||||...... +...+..||.+|+++..+.--.. .+...+..+ ...+++++ |++|+++.
T Consensus 116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5799999998643322 22347789999999987542222 333333322 23456644 78999884
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.021 Score=71.02 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|+|++|..|.+. .+. -...+|.||+.++.+|.+|..|+.|||.|.+.+. ..+
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~--------~di 366 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK--------ADI 366 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcH--------HHc
Confidence 3676 4457888889999999999999884 332 2458999999999999999999999999987542 246
Q ss_pred cCCCeEEE
Q 000626 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..|++|..
T Consensus 367 ~rG~VL~~ 374 (478)
T PLN03126 367 QRGMVLAK 374 (478)
T ss_pred CCccEEec
Confidence 66777754
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.04 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999999999999754
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.087 Score=65.70 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=8.4
Q ss_pred cCCceEEEEeeccc
Q 000626 908 RNTEFIVALNKVDR 921 (1384)
Q Consensus 908 ~~vP~IVaINKiDl 921 (1384)
..-|+++|.-|-|+
T Consensus 1190 ~kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1190 DKPPILLVAGKDDM 1203 (1259)
T ss_pred CCCCeEEEecCchH
Confidence 34566666666664
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.05 Score=66.38 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=60.1
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ +..+.|+..+|..|+|++|..|.+. .+. -...+|.||+.++.+|.+|..|+-|||.|.+-+. .++
T Consensus 219 ~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~--------~~i 289 (396)
T PRK12735 219 DVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKR--------EDV 289 (396)
T ss_pred EEEecCCceEEEEEEEEecEEeCCCEEEEecCCC-CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcH--------HHC
Confidence 3665 4557888889999999999999874 321 2358999999999999999999999999987532 246
Q ss_pred cCCCeEEE
Q 000626 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..|++|..
T Consensus 290 ~rG~vl~~ 297 (396)
T PRK12735 290 ERGQVLAK 297 (396)
T ss_pred CcceEEEc
Confidence 66777644
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.015 Score=74.68 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=82.5
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee-----------------------eeEecccccc---
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-----------------------ATYFPAENIR--- 842 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig-----------------------a~~~~~~~i~--- 842 (1384)
...+..|.|+|+|...+|||+.|+.|++..+..-..+.+|...- ..+.+...++
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 34566778999999999999999999985554333333332100 0000110000
Q ss_pred -cchhhc---cc-----cc-----ccCCCCEEEEeCCCCc-------------chhHHHHhcccccceeEEEeeccCCCC
Q 000626 843 -ERTREL---KA-----NA-----TLKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLE 895 (1384)
Q Consensus 843 -~~~~~i---~~-----~~-----~~~~~~i~~IDTPGHe-------------~F~~~r~rg~~~aDiaILVVDa~~Gv~ 895 (1384)
..+..+ .. .. .-....+++||+||.. ....|...++....++||.|.... ..
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hh
Confidence 000000 00 00 1123569999999943 246788888999999999887755 44
Q ss_pred HHHHHHHHHHHhc---CCceEEEEeecccc
Q 000626 896 PQTIESLNLLKMR---NTEFIVALNKVDRL 922 (1384)
Q Consensus 896 ~QT~E~l~llk~~---~vP~IVaINKiDl~ 922 (1384)
--|.++|.+++.. +..+|-|++|.|+.
T Consensus 183 ~ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 183 IATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hhcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 5666777777764 46788899999985
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.031 Score=68.20 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=61.7
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|+|++|..|.+. -+. -...+|.||+.++.+|.+|..|+-|||.|.+.+. .++
T Consensus 219 ~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~--------~~i 289 (396)
T PRK00049 219 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKR--------EDV 289 (396)
T ss_pred EEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC-CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCH--------HHC
Confidence 3676 4567889999999999999999873 211 2358999999999999999999999999987542 256
Q ss_pred cCCCeEEEe
Q 000626 1341 DIEDELVSH 1349 (1384)
Q Consensus 1341 ~~~d~l~s~ 1349 (1384)
..|++|.+.
T Consensus 290 ~~G~vl~~~ 298 (396)
T PRK00049 290 ERGQVLAKP 298 (396)
T ss_pred CcceEEecC
Confidence 778877553
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.011 Score=69.84 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..+...|+|+|-+++|||||+++|....+ ..|..+|+|..+.-..+. ..|.|+|+||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-------------------k~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-------------------KKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-------------------CCceeccCCce
Confidence 34666799999999999999999987654 566777777655433222 35899999995
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.032 Score=68.66 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=64.1
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000626 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|..+-|. .+|+ ...+.|+..+|..|+|+.|..|.+ +.+ ...+|.||+.++.+|.+|..|+-|||.|.+.+.
T Consensus 227 p~r~~i~--~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~-- 299 (426)
T TIGR00483 227 PLRIPIQ--DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSK-- 299 (426)
T ss_pred CcEEEEE--EEEecCCCeEEEEEEEccceeecCCEEEECCCC---cEEEEEEEEECCcccCEEcCCCEEEEEECCCCh--
Confidence 4444444 3776 455788888999999999999998 555 358999999999999999999999999987532
Q ss_pred hhccccccccCCCeEEE
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
.++..|++|..
T Consensus 300 ------~~i~rG~vl~~ 310 (426)
T TIGR00483 300 ------KDIRRGDVCGH 310 (426)
T ss_pred ------hhcccceEEec
Confidence 24666777654
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.017 Score=62.24 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC---ceEEEEeecccc
Q 000626 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v---P~IVaINKiDl~ 922 (1384)
..|.|||||++.... ....+..+|.+|++++.+.--...+..++..+...+. .+.+++|+++..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 679999999875554 4556778999999999765333445556666776663 346899999863
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.077 Score=64.71 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=59.1
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeecC-CceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000626 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIPQ-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~-~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
+|+ ...+.|+..+|..|+|++|..|.+.. +.. ...+|.||+.++.+|.+|..|+-|||.|.+.+. ..+.
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~-~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i~ 288 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDT-RKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKR--------EEIE 288 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCC-cEEEEEEEEECCeEEEEECCCCEEEEEeCCccH--------HHCC
Confidence 666 45678999999999999999998732 111 247899999999999999999999999986532 2466
Q ss_pred CCCeEEE
Q 000626 1342 IEDELVS 1348 (1384)
Q Consensus 1342 ~~d~l~s 1348 (1384)
.||+|..
T Consensus 289 rG~vl~~ 295 (394)
T TIGR00485 289 RGMVLAK 295 (394)
T ss_pred ccEEEec
Confidence 6776633
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.032 Score=57.70 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+++|+|++|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.014 Score=60.02 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 000626 796 ICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~ 815 (1384)
+|+|+|++|+|||||+..|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
|
... |
| >cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.07 Score=50.21 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=49.9
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000626 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
|.+.|+.+.+... |.++.++|++|+|++||.|.++..+. -.+|..|....+.....+ .+ +.+|-.+.+
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~~-------~~--~~aGdI~~i 68 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGK--KVRVPRLVRMHSNEMEEV-------EE--AGAGDICAI 68 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCC--EEEEeEEEEEeCCCceEc-------cE--ECCCCEEEE
Confidence 3467888877765 99999999999999999998765432 122333322222211111 11 224656667
Q ss_pred cccccccCCCce
Q 000626 1097 QGLEHAIAGTGL 1108 (1384)
Q Consensus 1097 ~gL~~~~aG~~l 1108 (1384)
.|++ ..+|+++
T Consensus 69 ~g~~-~~~Gdtl 79 (81)
T cd04091 69 FGID-CASGDTF 79 (81)
T ss_pred ECCC-cccCCEe
Confidence 7887 7788876
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.24 Score=52.68 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-cccCc-eeE-------eeeeeEecccccccchhhccccccc--CCCCEEEEeC
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGG-ITQ-------QIGATYFPAENIRERTRELKANATL--KVPGLLVIDT 864 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gG-ITq-------~iga~~~~~~~i~~~~~~i~~~~~~--~~~~i~~IDT 864 (1384)
.|.|.|+||+|||||+-+|...--.. ...+| +|. .+|...+....-+ ..+.+...+ .--+=+.+|+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~---~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGE---EGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCc---eEEEEEcCCCCcccceEEeeH
Confidence 48999999999999998886321111 11222 222 1222222211100 000000000 0001222333
Q ss_pred CCCc-chhHHHHhcccccceeEEEeec---cCCCCHHHHHHHHHHHhcCCceEEEEeeccc
Q 000626 865 PGHE-SFTNLRSRGSGLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 865 PGHe-~F~~~r~rg~~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl 921 (1384)
-+.+ -+.....+++..+|++ +||= |.-..+...+.+..+...+.|+|+++.+-++
T Consensus 84 ~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 3322 2233444555566764 4553 3333344455666667778899998887765
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.016 Score=67.50 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+..+|+|+|+.|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999998643
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.069 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999998653
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.043 Score=67.89 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=60.5
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.||+ ...+.|+..+|..|+|++|..|.+ +.+. ..+|.||+.++.+|.+|..|+.|||.|.+.+. ..+
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~--------~~i 308 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL---TTEVKSVEMHHESLQEALPGDNVGFNVKNVAV--------KDL 308 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC---EEEEEEEEECCeEeCEecCCCeEEEEECCCCH--------hhC
Confidence 3776 455788888999999999999987 5552 58999999999999999999999999987642 245
Q ss_pred cCCCeEEE
Q 000626 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
.-|++|..
T Consensus 309 ~rG~vl~~ 316 (447)
T PLN00043 309 KRGYVASN 316 (447)
T ss_pred CCccEEcc
Confidence 66776644
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.019 Score=68.99 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
-+++|+|++|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999864
|
|
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.076 Score=50.65 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=51.9
Q ss_pred EEEEEEE---EcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000626 1020 TVLEVKV---IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1020 ~VlEvk~---~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
.|+.+.. .+..|..+.++|++|+|+.||.|....... -.+|..|+.+.......+ . .+.+|-.+++
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~--~~kv~~l~~~~g~~~~~v-------~--~a~aGdIv~v 70 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGK--EVRLSNPQQFFAQDRETV-------D--EAYPGDIIGL 70 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCC--EEEeeEeEEEecCCeeEc-------C--EECCCCEEEE
Confidence 5667767 778899999999999999999997655321 123333432222211111 1 1335778888
Q ss_pred cccccccCCCceE
Q 000626 1097 QGLEHAIAGTGLY 1109 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~ 1109 (1384)
.||....+|++|.
T Consensus 71 ~gl~~~~~Gdtl~ 83 (85)
T cd03689 71 VNPGNFQIGDTLT 83 (85)
T ss_pred ECCCCccccCEee
Confidence 8998888888773
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.058 Score=66.10 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=59.2
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeec--CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000626 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIP--QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~--~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
+|+ ...+.|+..+|..|+|+.|..|.+. +.. ...+|.||+.++.+|++|..|+-|||.|.+.+. .++
T Consensus 228 v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~--------~~i 297 (409)
T CHL00071 228 VFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--KTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQK--------EDI 297 (409)
T ss_pred EEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--cEEEEEEEEEcCcCCCEECCCceeEEEEcCCCH--------HHc
Confidence 665 3457888889999999999999863 221 357999999999999999999999999987542 246
Q ss_pred cCCCeEEE
Q 000626 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..||+|.+
T Consensus 298 ~~G~vl~~ 305 (409)
T CHL00071 298 ERGMVLAK 305 (409)
T ss_pred CCeEEEec
Confidence 66777744
|
|
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=63.31 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
++.+|+|+|.+|+||||+...|...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~ 278 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYR 278 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998643
|
|
| >cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=51.56 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.2
Q ss_pred ccccceEEEEEEEEc--------CcceEEEEEEEeeeecCCCEEEEc
Q 000626 1014 RNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1052 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~--------G~G~vi~~iV~~G~Lr~GD~Ivv~ 1052 (1384)
..++.+.|..+|.+. ++|.|+.+.|.+|+|++||.|-|.
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 457889999999998 999999999999999999999664
|
eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. |
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.1 Score=59.98 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHH----hcCCce-EEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK----MRNTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk----~~~vP~-IVaINKiDl 921 (1384)
.+.+.||||||+..... +...+..+|.+|+++...--....+...++.+. ..++++ .|++|+++.
T Consensus 115 ~yD~ViID~~~~~~~~~-~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGG-FATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCc-cccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 36799999998632111 123467899999988653221122223333332 235654 478899884
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.049 Score=67.03 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=63.4
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000626 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|..+-|. .+|+ +..+.|+..+|..|+|++|..|.+ +.+. ..+|.||+.++.+|..|..|+-|||.|.+.+.
T Consensus 225 p~r~~i~--~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~-- 297 (425)
T PRK12317 225 PLRIPIQ--DVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGV---VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGK-- 297 (425)
T ss_pred CcEEEEE--EEEeeCCCeEEEEEEEeeccEecCCEEEECCCCC---eEEEEEEEECCcccCEECCCCeEEEEECCCCH--
Confidence 4344444 3676 456788889999999999999988 4442 58999999999999999999999999987542
Q ss_pred hhccccccccCCCeEEE
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
.++..||+|..
T Consensus 298 ------~~i~rG~vl~~ 308 (425)
T PRK12317 298 ------KDIKRGDVCGH 308 (425)
T ss_pred ------HHccCccEecC
Confidence 24566776643
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.093 Score=58.25 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCcchhHHHH-hcccccceeEEEeeccCCCC---HHHHHHHHHHHhc-CCce-EEEEeeccc
Q 000626 856 VPGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~-rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~-~vP~-IVaINKiDl 921 (1384)
.+.|.||||||+........ .....||.+|+|+..+.--. ....+.+..++.. ++++ .|++|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 35799999998753222211 11247999999997643111 2233344444332 5444 489999984
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.064 Score=68.90 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHhccceecceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEeccccc
Q 000626 1229 FDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENN 1307 (1384)
Q Consensus 1229 ~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~ 1307 (1384)
++.+..++..+..+... .--|..+-|-. +|. +..+.|+...|..|+|++|..|.+... -...+|.||+.+
T Consensus 154 I~~L~~~L~~~~~~~~~-----~~~~~rl~Id~--vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~--~~~~~VrsIq~~ 224 (614)
T PRK10512 154 IDALREHLLQLPEREHA-----AQHRFRLAIDR--AFTVKGAGLVVTGTALSGEVKVGDTLWLTGV--NKPMRVRGLHAQ 224 (614)
T ss_pred CHHHHHHHHHhhccccC-----cCCCceEEEEE--EeccCCCeEEEEEEEecceEecCCEEEEcCC--CCcEEEEEEecC
Q ss_pred ccccccccCCCeEEEEEec-CCchhhhccccccccCCCeEEE
Q 000626 1308 HKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1308 k~~V~ea~kG~EcgI~i~~-~~~~~~~~~~gr~f~~~d~l~s 1348 (1384)
+.+|.+|..|+-|||.|.| .+. ..+.-||+|.+
T Consensus 225 ~~~v~~a~aG~rval~l~g~~~~--------~~i~rGdvl~~ 258 (614)
T PRK10512 225 NQPTEQAQAGQRIALNIAGDAEK--------EQINRGDWLLA 258 (614)
T ss_pred CcCCCEEeCCCeEEEEecCCCCh--------hhCCCcCEEeC
|
|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.072 Score=60.07 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred CEEEEEc-CCCCCHHHHHHHHHcCccccccc---------Ccee-----------------------------EeeeeeE
Q 000626 795 PICCIMG-HVDTGKTKLLDCIRGTNVQEGEA---------GGIT-----------------------------QQIGATY 835 (1384)
Q Consensus 795 piV~IlG-hvdsGKTTLLd~L~~t~v~~ge~---------gGIT-----------------------------q~iga~~ 835 (1384)
++|+|++ ..|+||||+.-.|...-...|.. +.++ ...+...
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Q ss_pred ecccc------------cccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHH
Q 000626 836 FPAEN------------IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN 903 (1384)
Q Consensus 836 ~~~~~------------i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ 903 (1384)
+|... .......+-.........+.|||||+ .+..+....+..||.+|+|+..+.--...+...+.
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp--~~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~ 159 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPR--GPSPITRQALAAADLVLVVVNADAACYATLHQQAL 159 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCC--CchHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHH
Q ss_pred HHHh---cCCceEEEEeecc
Q 000626 904 LLKM---RNTEFIVALNKVD 920 (1384)
Q Consensus 904 llk~---~~vP~IVaINKiD 920 (1384)
.+.. ...++-|++|++|
T Consensus 160 ~l~~~~~~~~~~~iv~n~~~ 179 (246)
T TIGR03371 160 ALFAGSGPRIGPHFLINQFD 179 (246)
T ss_pred HHhhcccccccceEEeeccC
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.074 Score=64.10 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHhccceecceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccc
Q 000626 1229 FDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN 1306 (1384)
Q Consensus 1229 ~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~ 1306 (1384)
|++++++|..+.+......-+.. +|.-+++|. +..++|+=-.|..|+++.|..+.+ +-| ..=+|.||+.
T Consensus 150 I~~Lk~~l~~L~~~~e~d~~~~f------ri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~---k~v~VRsIq~ 220 (447)
T COG3276 150 IEELKNELIDLLEEIERDEQKPF------RIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN---KEVRVRSIQA 220 (447)
T ss_pred HHHHHHHHHHhhhhhhhccCCce------EEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC---CeEEEEeeee
Q ss_pred cccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEE
Q 000626 1307 NHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1307 ~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s 1348 (1384)
+..++++|..|+.||+.|.|-.. ..++-||.|.+
T Consensus 221 ~d~d~~~a~AG~RVgLaL~~v~~--------eei~RG~~L~~ 254 (447)
T COG3276 221 HDVDVEEAKAGQRVGLALKGVEK--------EEIERGDWLLK 254 (447)
T ss_pred cCcchhhccccceeeeecCCCCH--------HHhhcccEecc
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1384 | ||||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 6e-99 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 3e-96 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 1e-30 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 7e-25 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 1e-19 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 8e-09 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 4e-06 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 5e-06 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 5e-06 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 5e-06 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 9e-06 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 1e-05 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-05 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 6e-05 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 7e-05 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 9e-05 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 2e-04 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 3e-04 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 3e-04 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 7e-04 |
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 830 bits (2147), Expect = 0.0
Identities = 213/596 (35%), Positives = 349/596 (58%), Gaps = 21/596 (3%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--K 849
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I + K
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVI 1027
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L + + T+LEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQI 1086
G G TID V+ +G+L + D I + + I T IR+LL P P++E+R + + ++
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 1087 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1146
AA GIKI A G++ +AG+ L VV + + + +ED+K ID GV V+A
Sbjct: 303 VAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIK-----IDTDEAGVVVKA 357
Query: 1147 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
TLGSLEA+++ L+ + +P+ IG V ++DV+ A + L++ + Y I+AF+VKV P
Sbjct: 358 DTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP 415
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
A + + +K+F ++IY L +++ ++ ++EEKK++ + + P ++++P VF
Sbjct: 416 SAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFR 475
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1326
+ P + GV+V+ G+ + G P+ D +G + S+++ + + +A +GQK A+ I
Sbjct: 476 QSKPAIGGVEVLTGVIRQGYPLMN--DDGETVGTVESMQDKGENLKSASRGQKVAMAI-- 531
Query: 1327 SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFK 1382
+ ++G+ D L I +LK DL+ +E L+ K+ + +
Sbjct: 532 -----KDAVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKR 582
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 9e-53
Identities = 132/594 (22%), Positives = 217/594 (36%), Gaps = 126/594 (21%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
RSP+ IMGHVD GKT LLD +R T V EAGGITQ IGA + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLKMR 908
+DTPGH +F+ +R+RG+ + DI ILVV +M QT+ES+ K
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM----KQTVESIQHAKDA 103
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
+ ++A+NK D+ A K +K++ L + E
Sbjct: 104 HVPIVLAINKCDK-------AEADPEK-VKKE------------------LLAYDVVCED 137
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLEVK 1025
Y G+ V SA++GE + L + M+E K ++ TV+E
Sbjct: 138 Y-----GGDV-QAVHVSALTGENMMALAEATIA----LAEMLELKADPTGAVEGTVIESF 187
Query: 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH---------------- 1069
+G G ++ G L +G +V G +R + +
Sbjct: 188 TDKGRGPVTTAIIQRGTLRKGSILVA----GKSWAKVRLMFDENGRAVNEAYPSMPVGII 243
Query: 1070 -----PM-----------KELRVKGTYLHHKQ--IKAAQGIKITAQGLEHAIAG--TGLY 1109
P R + ++Q K + +K+ + +
Sbjct: 244 GWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDRE 303
Query: 1110 VVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEG------VCVQASTLGSLEALLEFLK--- 1160
G E + E + + + E V V+ GS+EA+L +
Sbjct: 304 KYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYD 363
Query: 1161 -SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKI 1219
S ++ + +G + + DV A + I F+V ++LA + GVKI
Sbjct: 364 ASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLAAKKGVKI 417
Query: 1220 FIADIIYHLFDQFTAYIN-NLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVV 1278
+ IIY L + ++ L + EA +L KK P+ G V
Sbjct: 418 KLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS---ILATFSITEGKKKVPVA-GCRVQ 473
Query: 1279 EGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1330
+G + + R+ I G + S++++ K G + + E
Sbjct: 474 KGQIEKQKKFKL-IRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIE 526
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 4e-47
Identities = 130/487 (26%), Positives = 211/487 (43%), Gaps = 117/487 (24%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R+P+ IMGHVD GKT LL+ IR T V GEAGGITQ IGA Y
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA-Y----------------- 44
Query: 853 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLK 906
++ ++ +DTPGH +FT++R+RG+ DI +LVV +M PQTIE++ K
Sbjct: 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM----PQTIEAIQHAK 100
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
+VA+NK+D K + VK +L + G+
Sbjct: 101 AAQVPVVVAVNKID-----KPEADPDRVK---------------------NELSQYGILP 134
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLE 1023
E + G V SA +G GI +LL +LL Q ++E K + V+E
Sbjct: 135 E------EWGGESQFVHVSAKAGTGIDELLDAILL----QAEVLELKAVRKGMASGAVIE 184
Query: 1024 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHH 1083
+ +G G V++ G LH+GD IV+CG + +RA+ G
Sbjct: 185 SFLDKGRGPVATVLVREGTLHKGD-IVLCGFE---YGRVRAMRNE--------LG----- 227
Query: 1084 KQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD----------LEDVKEEAMEDMKSV 1131
+++ A I + GL AG + VV D+ +E + +
Sbjct: 228 QEVLEAGPSIPVEILGLSGVPAAGDEVTVV--RDEKKAREVALYRQGKFREVKLARQQKS 285
Query: 1132 -----MSRIDKSGE----GVCVQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKK 1179
+ + GE + ++A GS+EA+ L L +D VK+ + G +G + +
Sbjct: 286 KLENMFANM-TEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITET 344
Query: 1180 DVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL 1239
D A+ A ++ F+V+ AR++ E + + +IY+L D+ A ++ +
Sbjct: 345 DATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGM 398
Query: 1240 KEEKKRE 1246
+ ++
Sbjct: 399 LSPELKQ 405
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-39
Identities = 77/212 (36%), Positives = 105/212 (49%), Gaps = 54/212 (25%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R P+ IMGHVD GKT LLD IR + V E EAGGITQ IGA Y
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGA-Y----------------- 48
Query: 853 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
+ V + +DTPGHE+FT +R+RG+ + DI ILVV G+ PQT+E++N K N
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV 108
Query: 911 EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY 970
IVA+NK+D+ + N D +++ +L E + E +
Sbjct: 109 PIIVAINKMDK----------------PEANPD----------RVMQELMEYNLVPEEW- 141
Query: 971 KNKDRGETFNIVPTSAISGEGIPDLL--LLLV 1000
G+T SA + EG+ LL +LLV
Sbjct: 142 ----GGDTI-FCKLSAKTKEGLDHLLEMILLV 168
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 7e-13
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 798 CIMGHVDTGKTKLLDCI---------------RGTNVQEGEAG-GITQQIGAT----YFP 837
++ HVD GK+ L D + R T+ ++ E GIT I +T Y
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGIT--IKSTAISLYS- 79
Query: 838 AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 897
E E +E+K + +ID+PGH F++ + + D A++VVD + G+ Q
Sbjct: 80 -EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
Query: 898 TIESLNLLKMRNTEFIVALNKVDRL 922
T L + +V +NKVDR
Sbjct: 139 TETVLRQALGERIKPVVVINKVDRA 163
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 9e-13
Identities = 55/465 (11%), Positives = 135/465 (29%), Gaps = 143/465 (30%)
Query: 889 DIMHGLEPQTIESL----------NLLKMRNTEFIV----ALNKVDRLYGWKTCR-NAPI 933
DI+ E +++ ++L + I+ A++ RL+ W +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEM 78
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
V+ ++ + + I T+ ++ M T +Y + +DR +N
Sbjct: 79 VQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQV-------FA 127
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG---HG------TTIDVVLVNGVLH 1044
+ ++ KL R L E++ + G T + V
Sbjct: 128 KYNV-----SRLQPYLKL--RQALL----ELRPAKNVLIDGVLGSGKT----WVALDVCL 172
Query: 1045 EGDQIVVCGLQGPI-------VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097
V C + I + +L +++L + + + IK+
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1098 GLEHAIAG--------TGLYVVGPDDDLEDVKE-EAMEDMKS---VMSRIDKS------- 1138
++ + L V+ ++++ K A ++ + +R K
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAF-NLSCKILLTTR-FKQVTDFLSA 283
Query: 1139 --GEGVCVQASTLG-----SLEALLEFLKSDAVKIPVSGISIGPVH-------------- 1177
+ + ++ LL++L +P ++ P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 1178 -----------KKDVMRASV-ML---EKKKEYATILAF--DVKVTP-------------E 1207
++ +S+ +L E +K + + F + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 1208 ARELAEELGVKIFIA-DIIYHLFDQFTAYINNLKEEKKREAADEA 1251
+ +L + + T I ++ E K + +E
Sbjct: 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEY 443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 72/526 (13%), Positives = 148/526 (28%), Gaps = 135/526 (25%)
Query: 216 DLLDDEDEDVRED---KDEEDEP-VIFTDKKKKSKKSGKNSST-----FDLLVNENDD-V 265
D+L ++ ++ KD +D P I + ++ K++ + F L+++ ++ V
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 266 K---EDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT 322
+ E+ + K + M + + E++D+ D +
Sbjct: 80 QKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY----------IEQRDRLYNDNQVF-- 126
Query: 323 DKKKKTKSSKKTVSSFSEVLL---DEENVVEDAPVLSDVSG---------AVDTKQQSGD 370
K S + + LL +NV+ + G A+D
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLGSGKTWVALDVCL---S 173
Query: 371 SSIVESDDFKV--------NKGEVV--------AQTSKNKKKKKEKEKPRSERTAQEEDD 414
+ DFK+ N E V Q N + + R + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 415 LEKILAELGQGPAPQEEKV-----QVQPPEPVAPPD-------------AADEKVGEEEK 456
L ++L E VQ + + D
Sbjct: 234 LRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
S ++ K Q E + T P +++S
Sbjct: 288 HIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--------NP-RRLSIIAES 336
Query: 517 MQEALAR----RKEAEERKKREEEERLR--KEEEERKRLEELERQAEEAK---------- 560
+++ LA + ++ E L + E RK + L A
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR--P 618
+ + ++ K + L+ + KE + ++ K + ++ A +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELK---VKLENEYALHRSIVD 451
Query: 619 KYQTKKKSAHHQANGAVPLKEDS-IES------KEKEQEKQETLLE 657
Y K ++ +P D S K E ++ TL
Sbjct: 452 HYNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 6e-12
Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 78/300 (26%)
Query: 801 GHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853
GH+D GKT L + + E + GIT IG + F EN R
Sbjct: 26 GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR----------- 74
Query: 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+ ++D PGH + + D+A++VVD G + QT E + +L N I
Sbjct: 75 -----ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
V + K D E R I+ + ++
Sbjct: 130 VVITKSDN----------------------AGTEEIKRTEMIMKSI----------LQST 157
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---FRNELQCTVLEVKVIEGH 1030
+ +I+P SA +G G+ +L L++ + + T F+ + I+G
Sbjct: 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFK----MPLDHAFPIKGA 213
Query: 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090
GT + + G++ GD++ V + +V+ + + A+
Sbjct: 214 GTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAK 257
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-11
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 34/206 (16%)
Query: 812 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871
+ + + G + + E E ++ K ++IDTPG
Sbjct: 66 EFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETF 123
Query: 872 NLRSRGSGLCD-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDR 921
G L + + + + D +P + + I ALNKVD
Sbjct: 124 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183
Query: 922 LYGWKT------CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L + + + A + + +Q ++ ++T E+
Sbjct: 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT---------EVL------ 228
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQ 1001
++ SA + EG DL L +
Sbjct: 229 -PPVRVLYLSAKTREGFEDLETLAYE 253
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 36/234 (15%), Positives = 89/234 (38%), Gaps = 25/234 (10%)
Query: 364 TKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELG 423
Q + + +V ++ ++E + + A+ + +K+ L
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL- 926
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+ + +Q+Q K+ +E+ +E + +K E + +
Sbjct: 927 -----ENKIMQLQ------------RKI-DEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
++ + E E K + +++++K +E+ + +K EE + + E +
Sbjct: 969 VERLRMSEE--EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 544 EERKRLEELERQAEEAKRRKKEKEKE--KLLKKKQEG--KLLTGKQKEEARRLE 593
E +++ L+ + EE RR ++ KE + ++KK K L +E R +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 26/247 (10%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND-GKSKGPEKKMS 511
+ ++ K +K A + V + E K
Sbjct: 850 RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK---EK 568
K E + E K + + ++ ++ +E K L E E + EK +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
E+L ++E K T + + +R + K + +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKEL------------HQTQTEKKTIEEWADKY 1017
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
+ E E ++Q TLL+ + E + ++ + E E + +
Sbjct: 1018 ----------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 689 VEEEDDD 695
+E + +D
Sbjct: 1068 LELDLND 1074
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 53/281 (18%), Positives = 114/281 (40%), Gaps = 16/281 (5%)
Query: 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE 526
K +E+E +A K++ + E K+ + K ++ + ++Q E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 527 AEER------KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL 580
AEE KK+E EE L E E R EE Q +A+++K +++ L ++ +E +
Sbjct: 911 AEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
K + E + + ++ +K K + + + +E+
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDD----ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 641 SIESKEKEQEKQETL---LEVDVGETEK-VEEGESLTVEEKPEIADAPKENEVEEEDDDD 696
++ K + K E++ LEV + + EK +E E + + + E +D ++ + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 697 DEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
+ AK +++ +DE + +E++S I
Sbjct: 1086 LKAQLAKKEEELQ-AALARLEDETSQKNNALKKIRELESHI 1125
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 31/326 (9%)
Query: 387 VAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDA 446
V + + + K E+ + ER + E +L+++ + Q EEK +Q
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNLLQE-------KL 901
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
E E EE KK++ +E + A E+++ + +A E KK +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA-EKKKMQQQMLDL 960
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE------ERKRLEEL------ER 554
E+++ ++ Q+ + A+ + K+ E++ L E++ ERK LEE
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
EE K + K K K E ++ K+++ + LE ++ + + L E
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
++ + + + + A+ ED K +K L + + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL-------ESHISDLQEDLE 1133
Query: 675 EEKPEIADAPKEN-EVEEEDDDDDEE 699
EK A K+ ++ EE + E
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTE 1159
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 31/216 (14%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E + + +K + ++ + +E +L + EE+V +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS----DLTTNL 1020
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+EK K ++ + + + K+++ + + K++ + E+ + + + +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQ--AEEAKRR 562
++ Q+ + +E L E + ++ L+K E + +L+ +E+A R
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
K EK+K L ++ + K + + +R
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 46/287 (16%), Positives = 102/287 (35%), Gaps = 42/287 (14%)
Query: 308 EKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQ 367
E + ++EE+ +KKK + + + E L +EE + L D K +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQ---QQMLDLEEQLEEEEAARQK---LQLEKVTADGKIK 986
Query: 368 SGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEE--DDLEKILAELGQG 425
+ I+ +D + T + K ++ + +EE +L K+ +
Sbjct: 987 KMEDDILIMED------QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ E ++ ++E++ +K K+K E E AE
Sbjct: 1041 ISELEVRL-------------------KKEEKSRQELEKIKRKL--EGESSDLHEQIAEL 1079
Query: 486 KQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ Q + K + + + ++ + + AL + +E E + +E L E+
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS-DLQEDLESEKAA 1138
Query: 546 RKRLE----ELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
R + E +L + E K ++ +++ G K ++
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY--KDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 35/211 (16%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
+++ E+E+ ++ E+ + + ++ E++ E E+ +
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-----RKLLEERVSD 1015
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQ 513
A ++K K K K K + + E + ++ + E +K K +G + +Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 514 VREMQEALARRKEAEERKKREEEERLRKE-EEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E+Q +A K + KK EE + E+E + ++ E + + + E L
Sbjct: 1076 IAELQAQIAELKA-QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ-EDLE 1133
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKG 603
+K ++++ + LEA++ +
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 14/181 (7%)
Query: 378 DFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQP 437
+ V + + EK + + E +K +A L Q +++
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYNRILKKLE- 899
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
+ A K E+ S + K K E + E + ++ +
Sbjct: 900 -------NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + A++ + + L E E +++E+L
Sbjct: 953 LTELN----YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Query: 558 E 558
Sbjct: 1009 H 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ ++ E++ A A E K+Q K + K N K +
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK-------LE 899
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+++ + +L+ E + LE Q+ + E
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
E E A + + A +R + HH
Sbjct: 960 GVPE-------LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 17/201 (8%), Positives = 50/201 (24%), Gaps = 18/201 (8%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPP 438
++ QT K++ P + + + + +++ Q
Sbjct: 824 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ-- 881
Query: 439 EPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
+ + + K + + A + EA + +
Sbjct: 882 ------KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ + ++ LA+ E E ER ++ + + +
Sbjct: 936 --------QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 987
Query: 559 AKRRKKEKEKEKL--LKKKQE 577
+ + +K+ L
Sbjct: 988 NTLLAELERLQKIEDLHHHHH 1008
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 5e-09
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA-----KRRKKEKEKE 569
R QE + RK EE++KR +E + + +E +A++ +R+ ++ EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQE----LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 570 KLLKKKQEGKLLTGKQKEE 588
K+ + + +Q +
Sbjct: 135 KINNRIADKAFY--QQPDA 151
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-07
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE--RKRLEELERQAEEAKRRK 563
PE + K E ++ L A + ++E E+ +K+ EE +++ E++E K +
Sbjct: 84 PES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------KNKI 136
Query: 564 KEKEKEKLLKKKQEGKLL 581
+ +K ++ + ++
Sbjct: 137 NNRIADKAFYQQPDADII 154
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 11/93 (11%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ +E + +K ++++ K ++ AA+ +Q+ + +A +K + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASK--VMEQEWREKA-------------KKDLEE 122
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ E + + K R ++ ++ + +
Sbjct: 123 WNQRQSEQVEKNK-INNRI--ADKAFYQQPDAD 152
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 4e-08
Identities = 29/212 (13%), Positives = 73/212 (34%)
Query: 444 PDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
PD ++ + E A + + + T + +
Sbjct: 614 PDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAA 673
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
K +++ ++ R E ++E K R+E L + + +AE
Sbjct: 674 KHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAA 733
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+ + + +L+ K + + L + + E R++ +R L + A + + K
Sbjct: 734 RIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAK 793
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQEKQETL 655
K +A G +++ ++ E + + ++L
Sbjct: 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-07
Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 406 ERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
+ + E D A E Q +++ + + + +
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE 698
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK 525
+K KE + A + A E K+EA E++ + +G + +++ A+
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEA-ESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E E KK E E + + + + ++ A EAK+ K+ E +
Sbjct: 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817
Query: 585 QKEEARRL 592
Q + + L
Sbjct: 818 QVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 1e-05
Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 25/247 (10%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQE---------EKVQV 435
VA + + K R E + L Q V V
Sbjct: 581 GAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDV 640
Query: 436 QPPEPVAPPDAAD-EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
Q EPV ++ + E + S++ K E ++ ++ A K +SEA
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALAR---------------RKEAEERKKREEEERL 539
+ +K + + + EA +R + +A+ E E
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
R ++ L Q E + ++ + K K+ + L +
Sbjct: 761 RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Query: 600 LAKGIPL 606
L + + L
Sbjct: 821 LLQSLGL 827
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 103/316 (32%)
Query: 794 SPICCI--MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
S + + +G +G+T L + G + I E
Sbjct: 19 SHMANVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRN--------- 61
Query: 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMR 908
++ +D + + DIA+L + + T E + L +
Sbjct: 62 -------MVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLD----AHTGECIIALDLL 110
Query: 909 NTEFI-VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ +AL + D + ++ +LK T
Sbjct: 111 GFKHGIIALTRSDS----------------------THMH---AIDELKAKLKVITSGTV 145
Query: 968 LYYKNKDRGETFNIVPTSAISG-----EGIPDLLLLLVQWTQKT-----MVEKLTFRNEL 1017
L + + + + EG+ +L + + +K + L R
Sbjct: 146 L--------QDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPAR--- 194
Query: 1018 QCTVLEVKVIEGHGTTIDVV---LVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKEL 1074
+ + G G VV + G+ + D+ + L +++
Sbjct: 195 -IFIDHAFNVTGKGC---VVLGVVKQGISKDKDKTKIFPLD----------------RDI 234
Query: 1075 RVKGTYLHHKQIKAAQ 1090
++ H I +A
Sbjct: 235 EIRSIQSHDVDIDSAP 250
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGH FT R D A++V+D G+EP+TI+ + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145
Query: 921 R 921
R
Sbjct: 146 R 146
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 921 R 921
R
Sbjct: 146 R 146
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 11/176 (6%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA--PQEEKVQVQ 436
++ K E + + + E+ QE + +I + + A Q+ ++
Sbjct: 829 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 888
Query: 437 PPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET 496
E A + E +A K K + + E ++ + D ++ E
Sbjct: 889 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 948
Query: 497 KKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL 552
N + + A++ + + L E E +++E+L
Sbjct: 949 NYN---------GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 16/208 (7%), Positives = 53/208 (25%), Gaps = 37/208 (17%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
QT K++ P + + + + E ++++
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE----HAEALRIE----------- 869
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
++ + ++ KK + K +
Sbjct: 870 LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI------------------- 910
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ ++ + E + + L + E + E K ++
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL---NYNGVPELTERKDTFFAQQ 967
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAM 595
+ + K + E +++E +
Sbjct: 968 WTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 9/66 (13%)
Query: 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
++ DTPGHE +T + G+ CD+AI++VD +G++ QT I +LL +++ +V
Sbjct: 107 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI--ASLLGIKH--IVV 162
Query: 915 ALNKVD 920
A+NK+D
Sbjct: 163 AINKMD 168
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 7e-07
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 14/225 (6%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKK 468
LE + + + P+ + + + + + ++
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEH--------STNEADKQNEGEHARE 59
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
+ EK + A A+ ++ ET + +K EK + + E
Sbjct: 60 NKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKE 119
Query: 529 ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
K E + +E + E + + E K EK K+ + + E
Sbjct: 120 TEAKPEATN---QGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP 176
Query: 589 ARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
R + N+ + L + + K A N
Sbjct: 177 GAREDDAINR---GSVVLASRRTGHLVNEKASKEAKVQALSNTNS 218
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 53/186 (28%)
Query: 862 IDTPG-HES-----FTNLRSRGS-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
+DTPG + ++R D ILV D + +NL K F+V
Sbjct: 88 VDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV--VNLFKEMEIPFVV 145
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974
+NK+D L E+ + Y+++
Sbjct: 146 VVNKID-------------------------------------VLGEKAEELKGLYESRY 168
Query: 975 RGETFNIVPTSAISGEGIPDLLLLLVQW----TQKTMVEKLTFRNELQCTVLEVKVIEGH 1030
+ ++ SA+ +G D+ + + + + L +L V+ + +
Sbjct: 169 EAK---VLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPK 225
Query: 1031 GTTIDV 1036
G I
Sbjct: 226 GRLIMP 231
|
| >1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus} Length = 135 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 1150 GSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
GS+EAL L+ + + V++ + ++G + + D+ A+ A ++ F+V+
Sbjct: 52 GSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATA------SNAIVIGFNVRPDA 105
Query: 1207 EARELAEELGVKIFIADIIYHLFD 1230
A+ AE V I + IIY++ +
Sbjct: 106 NAKRAAESEKVDIRLHRIIYNVIE 129
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 7e-06
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
K +K +G+ + + + + KM K EM++ + + + +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK----QEGKLLTGKQK 586
K ++ E L++ E+ K+ E + + E KRR+ E EK ++ Q+ T ++
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Query: 587 EE 588
++
Sbjct: 412 KK 413
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 3e-04
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ K K + K + + K E + + K K +K+
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEK 570
E+Q + K+ E + +E EE+ R+ E+E+ E +R E + R EK K+K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 8e-04
Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
+ + E ++RE +++K E E +++ E++ + + K +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 564 KEKE---KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
E E + + +KK E + + +E+ R+ E + + A+ L + ++ K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHK--ELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK 412
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-05
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
CI+ HVD GK+ L D + ++ G I++ + ++ RER +K A +
Sbjct: 10 CIIAHVDHGKSTLADRL----LEY--TGAISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L +IDTPGH F+ SR C+ A+L++D G+E QT+ +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 908 RNTEFIVALNKVD 920
++ I +NK+D
Sbjct: 124 QDLVIIPVINKID 136
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
I+ H+D GK+ L D I +Q GG++ ++ A + ++ RER +KA + TL
Sbjct: 8 SIIAHIDHGKSTLSDRI----IQI--CGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 908 RNTEFIVALNKVD 920
+ E + LNK+D
Sbjct: 122 MDLEVVPVLNKID 134
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
++ K+ EM++ +R + +E + +E E+ L ++ + K+L + E++ E K++ +
Sbjct: 332 LGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDD 391
Query: 567 EKEKLLKKKQEGKLL 581
E ++K +LL
Sbjct: 392 EVNAFKQRKTAAELL 406
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 21/123 (17%), Positives = 50/123 (40%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
EE K ++ A + K E + + K E ++ + +E
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
+ E R K+ + +K++ E++ + ++E ++ + AE + + + + LK+ +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 577 EGK 579
E K
Sbjct: 424 EKK 426
|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 28/246 (11%), Positives = 81/246 (32%), Gaps = 6/246 (2%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ + + K + +E++ K+A + + + ++ + + +++M +
Sbjct: 295 RKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERS 354
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ EA EE+ ++ + + E+ + + ++R E E++K +
Sbjct: 355 QANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEI 414
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
+ ++ ++ +Q+ E + E R Q + + AA A
Sbjct: 415 RAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTD 474
Query: 634 AVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESL------TVEEKPEIADAPKEN 687
S+ + ++ ++ E K ++A + E
Sbjct: 475 PDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDET 534
Query: 688 EVEEED 693
+ D
Sbjct: 535 KETAMD 540
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 4e-05
Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 13/192 (6%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A + + + P E Q ++K +P + + +
Sbjct: 402 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 461
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ +E A + + EKEKE + ++ + +S K + E
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIE-------VERVKAESAQASAKMLHEMQRKNE 514
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER--KRLEELERQAEEAKRRKKE 565
+ M ++ R QE L + K + +L KE+E +L+E E+ +E +++
Sbjct: 515 QMMEQKERSYQEHLKQ----LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 570
Query: 566 KEKEKLLKKKQE 577
K ++ + +
Sbjct: 571 IMKNEIQDLQTK 582
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 47/342 (13%), Positives = 99/342 (28%), Gaps = 30/342 (8%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEKEKLLKK 574
E ++ L + E R ++E L + + EE+ + E A + L +
Sbjct: 148 EKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRF 207
Query: 575 KQEGKLLTGKQKEEARRL---EAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ ++ K++ RL + + G L + + + + +
Sbjct: 208 PRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEG 267
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLT-VEEKPEIADAPKENEVE 690
V +ED + + V E VE+G+ L + + + +VE
Sbjct: 268 AFLVLRREDEPVATYFLPVG----MTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVE 323
Query: 691 EEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVA 750
E++ + E + + + R A VA
Sbjct: 324 AEEEGETVY--------------LTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVA 369
Query: 751 VKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
E +++ V + + + V E + + D GK K
Sbjct: 370 AIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKS 429
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFP----AENIRERTREL 848
R + + + AE I++ +EL
Sbjct: 430 DVYGRVEVDLVRNV---VRVVESYDIDARMGAEAIQQLLKEL 468
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 38/338 (11%), Positives = 95/338 (28%), Gaps = 29/338 (8%)
Query: 262 NDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIF 321
+ ++ P K + + + A ++ D + + E
Sbjct: 159 RELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVE---- 214
Query: 322 TDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPV----LSDVSGAVDTKQQSGDSSIVESD 377
KK++ + + ++ + P ++ G V+ K+ + +V
Sbjct: 215 YVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRR 274
Query: 378 DFKVNKGEVVA-----QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK 432
+ + + + +K + ++ + + E +
Sbjct: 275 EDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLT 334
Query: 433 VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSE 492
+ ++ EP V E A K + E+E A A +
Sbjct: 335 LFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASIL 394
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE------- 545
V+ + + E +V K + R E + +R
Sbjct: 395 VVKARVYPFEDD-VEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDID 453
Query: 546 --------RKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
++ L+EL+ +A E + ++ K + + K
Sbjct: 454 ARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAK 491
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 801 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 854
GHVD GKT L + G E GI+ ++G T + + L
Sbjct: 15 GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCL 74
Query: 855 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 907
L +D+PGHE+ + S G+ L D AILV+ +PQT E L L+ +
Sbjct: 75 AETEFLRRVSFVDSPGHETLMATMLS-GASLMDGAILVIAANEPCPQPQTKEHLMALEIL 133
Query: 908 RNTEFIVALNKVD 920
+ I+ NK+D
Sbjct: 134 GIDKIIIVQNKID 146
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 801 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 854
GHVD GKT L + G E GIT +IG A N +
Sbjct: 17 GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 76
Query: 855 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 907
+ ID PGHE+ T + + G+ L D AILV+ PQT E L L+ +
Sbjct: 77 HETEFVRRVSFIDAPGHEALMTTMLA-GASLMDGAILVIAANEPCPRPQTREHLMALQII 135
Query: 908 RNTEFIVALNKVD 920
I+A NK++
Sbjct: 136 GQKNIIIAQNKIE 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1384 | ||||
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 3e-40 | |
| d1g7sa2 | 128 | b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, | 1e-38 | |
| d1g7sa3 | 131 | c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, | 5e-32 | |
| d1g7sa1 | 101 | b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, | 2e-29 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-28 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 3e-20 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-18 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 2e-17 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 4e-17 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 4e-16 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 5e-16 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 3e-12 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 4e-11 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 2e-10 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 4e-10 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 7e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.001 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 7e-05 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 8e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 4e-04 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 5e-04 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 6e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 7e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 6e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.001 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.002 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 0.002 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.003 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 146 bits (369), Expect = 3e-40
Identities = 99/222 (44%), Positives = 144/222 (64%), Gaps = 2/222 (0%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 852 ATLKVP--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+++ GL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL 224
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 138 bits (350), Expect = 1e-38
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPV 1311
+ P ++++P VF + P + GV+V+ G+ + G P+ D +G + S+++ + +
Sbjct: 2 IKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMND--DGETVGTVESMQDKGENL 59
Query: 1312 DTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEW 1371
+A +GQK A+ I ++G+ D L I +LK DL+ +E
Sbjct: 60 KSASRGQKVAMAIKD-------AVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEEL 112
Query: 1372 RLLVKLKNLFKIQ 1384
L+ K+ + + +
Sbjct: 113 DLMDKIAEIKRKK 125
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 119 bits (300), Expect = 5e-32
Identities = 47/134 (35%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Query: 1116 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGP 1175
D E V+EE + +++ + +ID GV V+A TLGSLEA+++ L+ V I V+ I G
Sbjct: 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADI--GD 56
Query: 1176 VHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAY 1235
V ++DV+ A + L++ + Y I+AF+VKV P A + + +K+F ++IY L +++ +
Sbjct: 57 VSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEW 116
Query: 1236 INNLKEEKKREAAD 1249
+ ++EEKK++ +
Sbjct: 117 VRGIEEEKKKKWME 130
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 110 bits (277), Expect = 2e-29
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-V 1076
+ T+LEVK G G TID V+ +G+L + D I + + I T IR+LL P P++E+R
Sbjct: 6 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRES 65
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111
+ + ++ AA GIKI A G++ +AG+ L VV
Sbjct: 66 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVV 100
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 113 bits (282), Expect = 2e-28
Identities = 38/250 (15%), Positives = 67/250 (26%), Gaps = 56/250 (22%)
Query: 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP------------------ 837
I +G +GKT L + + G P
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 838 ----------------AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 881
E E ++ K ++IDTPG G L
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 882 D-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNA 931
+ + + + D +P + + I ALNKVD L + R+
Sbjct: 120 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
+ I ++ + + M ++ + ++ SA + EG
Sbjct: 180 KYFEDIDYLTARLKLD----------PSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 229
Query: 992 IPDLLLLLVQ 1001
DL L +
Sbjct: 230 FEDLETLAYE 239
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 88.5 bits (219), Expect = 3e-20
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 34/142 (23%)
Query: 798 CIMGHVDTGKTKLLDCI-----------------RGTNVQEGEAGGITQQIGATYFPAEN 840
+GHVD GKT L + E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 841 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+D PGH + G+ D AILVV G PQT E
Sbjct: 67 RH----------------YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 110
Query: 901 SLNLLKMRNTEFIV-ALNKVDR 921
+ L + +IV +NKVD
Sbjct: 111 HILLARQVGVPYIVVFMNKVDM 132
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 85.5 bits (211), Expect = 1e-18
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
I H+D GKT + I + + G + + F + RER + A T
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQE-RERGITITAAVTTCFW 68
Query: 858 G---LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
+ +ID PGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 915 ALNKVDRLY 923
NK+D+
Sbjct: 129 FANKMDKTG 137
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (204), Expect = 2e-17
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 798 CIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGATYFPAENI 841
++ HVD GK+ L D + R + +AG GIT + A +E
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 901
E +E+K + +ID+PGH F++ + + D A++VVD + G+ QT
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 902 LNLLKMRNTEFIVALNKVDRLYGW 925
L + +V +NKVDR
Sbjct: 141 LRQALGERIKPVVVINKVDRALLE 164
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.9 bits (196), Expect = 4e-17
Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 34/229 (14%)
Query: 798 CIMGHVDTGKTKLLDCI------------RGTNVQEGEAGGITQQIGATYFPAENIRERT 845
++GHVD GK+ L+ + + + G +++ + RER
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 846 RELKANAT---LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
+ K +ID PGH F G+ D AILVV G +
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-- 124
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
T + L KT ++ A+ + + R +IV Q+ +
Sbjct: 125 ---VEGQTREHIIL--------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
VP A SG+ I + + T+ E L
Sbjct: 174 ------MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL 216
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 76.8 bits (188), Expect = 4e-16
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 798 CIMGHVDTGKTKLLDCI----------------RGTNVQEGEAGGITQQIGATYFPAENI 841
G+VD GK+ L+ + R + + + AE
Sbjct: 13 LTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAERE 72
Query: 842 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+ T ++ + DTPGHE +T + G+ CD+AI++VD +G++ QT
Sbjct: 73 QGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR 132
Query: 901 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ + + IV L G+ I + + +
Sbjct: 133 HSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK------------- 179
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
T VP SA+ G+ + + + ++++E L
Sbjct: 180 ---------------PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL 215
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 75.8 bits (186), Expect = 5e-16
Identities = 44/226 (19%), Positives = 64/226 (28%), Gaps = 73/226 (32%)
Query: 798 CIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENI 841
+GHVD GKT L I N E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 901
D PGH + G+ D ILVV G PQT E
Sbjct: 67 H----------------YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH 110
Query: 902 LNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
L L + + +V +NK D + + + + +++
Sbjct: 111 LLLARQIGVEHVVVYVNKAD------------------------AVQDSEMVELVELEIR 146
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLL 996
E +GE I+ SA+ + + LL
Sbjct: 147 ELLTEFGY------KGEETPIIVGSALCALEQRDPELGLKSVQKLL 186
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.8 bits (160), Expect = 3e-12
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 799 IMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAENIRE-RTREL 848
++GHVD+GK+ + R E EA + + + + ++ R R +
Sbjct: 11 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGI 70
Query: 849 KANATLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEP 896
+ L + VID PGH F G+ D AIL++ G +
Sbjct: 71 TIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG 130
Query: 897 QTIESLNLLKMRNT-EFIVALNKVDR 921
QT E L + IVA+NK+D
Sbjct: 131 QTREHALLAFTLGVRQLIVAVNKMDS 156
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 61.9 bits (149), Expect = 4e-11
Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 50/222 (22%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEG----------EAGGITQQIGATYFPAENIRERT-- 845
++GHVD GKT L+ I G + + G IG + T
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 846 ---RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES- 901
+ + + ID PGHE G+ L D AILVV
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 902 -LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ L + I+ NKVD + + +Q
Sbjct: 132 FVALGIIGVKNLIIVQNKVDV-------VSKEEALSQYRQIKQFTKGTW----------- 173
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
E I+P SA+ I L+ + ++
Sbjct: 174 ---------------AENVPIIPVSALHKINIDSLIEGIEEY 200
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 59.6 bits (143), Expect = 2e-10
Identities = 41/215 (19%), Positives = 63/215 (29%), Gaps = 41/215 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854
++GHVD GKT L + G E GIT +IG R +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 855 KV-------PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+ ID PGHE+ G+ L D AILV+ +
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-- 126
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ I+ A + + + QI ++
Sbjct: 127 -----------------LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV---- 165
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
E I+P SA+ G I L+ + +
Sbjct: 166 --------AENAPIIPISALHGANIDVLVKAIEDF 192
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 59.9 bits (144), Expect = 4e-10
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-YFPAENIRERTRELKANATLKV 856
++GH +GKT L + + + G + + T Y P + T L
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 857 PGLLVI-DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915
+ + D PG+ F D A++ V G++ T + + + +V
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 916 LNKVDRLYGWKTCRN 930
+ K+D+ +
Sbjct: 126 VTKLDKGGDYYALLE 140
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 59.5 bits (143), Expect = 5e-10
Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 32/214 (14%)
Query: 798 CIMGHVDTGKTKLLDCI---------RGTNVQEGEA---GGITQQIGATYFPAENIRERT 845
+GHVD GK+ L I R E EA G + + RE+
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 846 RELKANATLK---VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
+ ++ ++D PGH+ + G+ DI +LV+ G E
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
+ R + ++ L + P V+ +++ + ++ +M L ++
Sbjct: 148 G--QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA------ 199
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
+ +P SA +G+ + D +
Sbjct: 200 ---------GYNSKTDVKYMPVSAYTGQNVKDRV 224
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 38/200 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
I+G + GK+ L + I G T+ + + +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
V + D+ ++V+D G+ Q L++ R +V
Sbjct: 72 ----VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
NK D + + + T+L+ +
Sbjct: 128 NKWDLVVHREKRYD---------------------------------EFTKLFREKLYFI 154
Query: 977 ETFNIVPTSAISGEGIPDLL 996
+ ++ TSA G I ++
Sbjct: 155 DYSPLIFTSADKGWNIDRMI 174
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 8e-05
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 40/210 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
G + GK+ L+ + G V+ G+ G+T++I + I + K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 858 GLLVIDTPGHESFTNLRSR------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
+ D H N ++ G I+ G P +E L+ +
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 912 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 971
IVA+NK+D++ + N ++
Sbjct: 124 TIVAVNKLDKIKNVQEVINF----------------------------------LAEKFE 149
Query: 972 NKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
+P SA G+ I L + +
Sbjct: 150 VPLSEIDKVFIPISAKFGDNIERLKNRIFE 179
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (101), Expect = 2e-04
Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 35/250 (14%)
Query: 757 EQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENL-RSPI-CCIMGHVDTGKTKLLDCI 814
+ + SQ+ + + ++ A + + S + + G +GK+ ++ +
Sbjct: 17 GRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL 76
Query: 815 RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---T 871
RG +E A + E T E +P ++ D PG S
Sbjct: 77 RGIGNEEEGA------------AKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP 124
Query: 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931
+ + ++ + I+ + M EF KVD
Sbjct: 125 DTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI-------- 176
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
+ Q D + + V +E G+ + ++ +
Sbjct: 177 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF----------LLSNKNVCHYD 226
Query: 992 IPDLLLLLVQ 1001
P L+ L+
Sbjct: 227 FPVLMDKLIS 236
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G+ TGK+ LL I ++ + ++ + K
Sbjct: 8 FLVIGNAGTGKSCLLHQF------------IEKKFKDDSNHTIGVEFGSKIINVGG--KY 53
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F ++ A+LV DI E AL
Sbjct: 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS-----------------RETYNAL 96
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+N I+ L L T L +
Sbjct: 97 TNWLTDARMLASQNIVII-----------------LCGNKKDLDADREVTFLEASRFAQE 139
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ TSA++GE + + + +
Sbjct: 140 NELMFLETSALTGENVEEAFVQCAR 164
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 21/224 (9%), Positives = 50/224 (22%), Gaps = 43/224 (19%)
Query: 779 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 838
P++ P G + GK+ L+ + + + F
Sbjct: 6 PDIRHLPS-----DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 839 ENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ + + + R ++++DI H L+
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS----LQGLVVLMDIRHPLKDLD 116
Query: 899 IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQ 958
+ + + KA K + + + N
Sbjct: 117 QQMIEWAVD-----------------SNIAVLVLLTKADKLASGARKAQLN--------- 150
Query: 959 LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
+ + S++ +G+ L L W
Sbjct: 151 --------MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 186
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 41/205 (20%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
I GH+D GKT L + I P R T
Sbjct: 9 GIFGHIDHGKTTLSKVLT----------EIASTSAHDKLPESQKRGITI----------- 47
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALN 917
F+ + + + + + ++L +
Sbjct: 48 ---------DIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 98
Query: 918 KVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGE 977
+ N PI+ I + + + E R I+ + + N +
Sbjct: 99 QTGEHMLILDHFNIPIIVVITKSD-NAGTEEIKRTEMIMKSILQSTHN----------LK 147
Query: 978 TFNIVPTSAISGEGIPDLLLLLVQW 1002
+I+P SA +G G+ +L L++
Sbjct: 148 NSSIIPISAKTGFGVDELKNLIITT 172
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 5e-04
Identities = 25/205 (12%), Positives = 45/205 (21%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
I+G GK+ LL A I + + +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK------------ 57
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F L ILV D+
Sbjct: 58 --LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT------------------------- 90
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ + + + + V + + +
Sbjct: 91 RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML----- 145
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ SA + +G+ LV+
Sbjct: 146 ----FIEASAKTCDGVQCAFEELVE 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (93), Expect = 6e-04
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G GKT +L I + R +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK------------ 56
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F + + +LV DI + +S + ++
Sbjct: 57 --LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE------KSFDNIRNWIRNIE--- 105
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ + + + + + + + KE+G L Y K
Sbjct: 106 --------EHASADVEKMILGNKCDVNDKRQVS----------KERGEKLALDYGIK--- 144
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ TSA + + + L +
Sbjct: 145 ----FMETSAKANINVENAFFTLAR 165
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.3 bits (90), Expect = 0.001
Identities = 26/213 (12%), Positives = 45/213 (21%), Gaps = 45/213 (21%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E S I+G + GK+ LL+ + G V T + E R+
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
E + + VVD+ H +
Sbjct: 61 PGLH-------KPMDALGEFMDQEVYEALADVNAVVWVVDLRHP-----------PTPED 102
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
AL + N ++ +E
Sbjct: 103 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPE------------------ 144
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
SA+ + +L L+
Sbjct: 145 ---------AEPRMLSALDERQVAELKADLLAL 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (89), Expect = 0.002
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 49/211 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G GK+ LL I +I + +L+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQ------- 54
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
+ DT G E F + + ILV DI
Sbjct: 55 ----IWDTAGQERFRTITTAYYRGAMGIILVYDITD------------------------ 86
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+T N I + K N +E + LV + ++ + + + + +
Sbjct: 87 --------ERTFTN--IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-QGEALAKE 135
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007
+ +SA + + + ++ L + Q+ +
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 0.002
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
I+G+ GKT L + F + I + +K
Sbjct: 8 ILIIGNSSVGKTSFLFRYA-----DDSFTPAFVSTVGIDFKVKTIYRNDKRIK------- 55
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E + + + IL+ DI + F
Sbjct: 56 --LQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------------EESFNAVQ 97
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ ++ + ++ K D + + R Q+ L
Sbjct: 98 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------------- 141
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
F SA + LV
Sbjct: 142 --FEFFEASAKDNINVKQTFERLVD 164
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (87), Expect = 0.003
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G+ GK+ LL Y + + + ++ + K
Sbjct: 9 LLLIGNSGVGKSCLLLRF------------SDDTYTNDYISTIGVDFKIKTVELDG--KT 54
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN------------- 903
L + DT G E F + S I+V D+ ++
Sbjct: 55 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 114
Query: 904 -LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
L+ + + + D + P ++ +T+V++ F + + + + Q
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL-TMARQIKESMSQ 173
Query: 963 GMNTELYYKNKDRG 976
E K +D+G
Sbjct: 174 QNLNETTQKKEDKG 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1384 | |||
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 100.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.95 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.95 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.94 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.94 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.94 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.94 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.93 | |
| d1g7sa3 | 131 | Initiation factor IF2/eIF5b, domain 3 {Archaeon Me | 99.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.92 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.79 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.78 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.77 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.71 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.66 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.65 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.65 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.64 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.61 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.6 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.6 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.6 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.59 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.59 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.59 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.57 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.57 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.56 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.56 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.54 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.53 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.53 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.53 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.5 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.49 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.48 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.47 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.45 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 99.45 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.43 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.35 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.26 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.21 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.14 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.07 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.95 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.92 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.83 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.79 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.28 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.11 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.11 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.01 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 97.95 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.92 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.86 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.86 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 97.84 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.81 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.78 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 97.71 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 97.69 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 97.68 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.46 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.38 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 97.2 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.16 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 97.06 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.01 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 96.92 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 96.82 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 96.82 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 96.71 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 96.6 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 96.54 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 96.2 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 96.17 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 96.15 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 96.05 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 96.0 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.85 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 95.65 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 95.6 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 95.56 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 95.32 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 95.3 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 95.25 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.23 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.21 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 95.1 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.94 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.88 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 94.68 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 93.63 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 93.38 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.17 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 92.76 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.53 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.55 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.16 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 89.9 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.64 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 88.7 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 88.38 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.15 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 88.02 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 87.64 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 87.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.06 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 86.4 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 86.29 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 86.24 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 86.15 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 85.93 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 85.57 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 85.55 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 85.53 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 85.35 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 85.11 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 85.1 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 84.82 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 84.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.27 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 83.78 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 83.62 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 83.59 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 83.53 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 83.45 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.19 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.17 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 83.17 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 82.88 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 82.81 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 82.81 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 82.72 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 82.68 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 82.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 82.01 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 81.29 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 81.05 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.95 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 80.89 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 80.85 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.72 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 80.02 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=1.5e-34 Score=278.54 Aligned_cols=222 Identities=45% Similarity=0.786 Sum_probs=195.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCC--CCCCCCCCEEEEECCCCC
Q ss_conf 689988999928999977999999839634555575137520368103321000000013--434577978999199983
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~--~~~~~~~~i~iIDTPGHe 868 (1384)
.+|+|+|||+||+|||||||+++|+++++...+.+++|.+++...++.+.....+..... ...+...+++|||||||.
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 98998799996998549999999982366001457454531531232101223444332100110111342234641100
Q ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11678871036666139986146899788899999987129936999931244347645888138999997649999999
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
+|...+.+++..||++|||||+.+|+++||.++|.++...++|+|||+||||++..|.......+...+..+...++..+
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred CCCCCCHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 00011100012464589998612376320257777764379759999989307881455446788875420308889899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998078213320124789831499478767989114799999999998998631
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L~ 1012 (1384)
...+......+...++....++...+|...+++||+||++|.||++|+..|..+++..|.+.|.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~l~ 225 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK 225 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998665666512310015777499934898989999999999999999998646
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.95 E-value=8.8e-28 Score=226.52 Aligned_cols=163 Identities=28% Similarity=0.340 Sum_probs=126.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC----------------CCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 88999928999977999999839----------------63455557513752036810332100000001343457797
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~ 858 (1384)
.+|+|+||||||||||+++|++. .......+|||+..+.+++.+.. ..
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~----------------~~ 67 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA----------------RH 67 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS----------------CE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECE----------------EE
T ss_conf 18999958898099999999999987376125565410465655078841772369998121----------------56
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 8999199983116788710366661399861468997888999999871299-369999312443476458881389999
Q 000626 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 859 i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVviNKiDl~~~w~~~~~a~~~~~l 937 (1384)
++|||||||.+|..++.++++.+|++|||||+..|+++||+++|.++..+++ |+|||+||||++. ...
T Consensus 68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~------~~~----- 136 (196)
T d1d2ea3 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ------DSE----- 136 (196)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS------CHH-----
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------CHH-----
T ss_conf 875237316778999999875437679999868887634899999999855884899985565666------087-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC----------CCHHHHHHHHHHHH
Q ss_conf 9764999999999999999999980782133201247898314994787679----------89114799999999
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TG----------eGI~eLl~~L~~l~ 1003 (1384)
.|+.....+...|...|++. ..+|+||+||++| .|++.||+.|..+.
T Consensus 137 ---------~~~~i~~~i~~~l~~~~~~~----------~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 137 ---------MVELVELEIRELLTEFGYKG----------EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ---------HHHHHHHHHHHHHHHHCCCC----------CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf ---------89999999999999719995----------5587999894526465684446378899999998518
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.95 E-value=7.6e-27 Score=219.29 Aligned_cols=172 Identities=24% Similarity=0.358 Sum_probs=117.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC--CCCCC---------CCCCEEEEEEEEEECC---CCCCCCHHHCCC---CCCCCCCCE
Q ss_conf 999928999977999999839--63455---------5575137520368103---321000000013---434577978
Q 000626 797 CCIMGHVDTGKTKLLDCIRGT--NVQEG---------EAGGITQQIGATYFPA---ENIRERTRELKA---NATLKVPGL 859 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t--~v~~g---------eagGITq~iga~~~~~---~~i~~~~~~i~~---~~~~~~~~i 859 (1384)
|+|+||||||||||+++|++. .+... ...|.+.....+.+.. ...+.+..++.. ...+..+.+
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 91 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKF 91 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCEEE
T ss_conf 99993789898999999999869835678899998898628654412210014641344315877315578984152379
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 9991999831167887103666613998614689978889999998712993-699993124434764588813899999
Q 000626 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 860 ~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+|||||||.+|...+.+|++.+|+||||||+.+|+++||++++.++..++++ +||++||||++ +|..
T Consensus 92 ~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~-~~~~----------- 159 (222)
T d1zunb3 92 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN-GFDE----------- 159 (222)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT-TSCH-----------
T ss_pred EEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC-CCCC-----------
T ss_conf 9981663255433321466557668987204567663338999999983998799998700145-5520-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 76499999999999999999998078213320124789831499478767989114799
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLL 997 (1384)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~ 997 (1384)
..|......+...+...+++ ...++|||+||++|+||.+.-.
T Consensus 160 -------~~~~~~~~~l~~~~~~~~~~----------~~~i~~IPiSA~~G~ni~~~s~ 201 (222)
T d1zunb3 160 -------RVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVNKSE 201 (222)
T ss_dssp -------HHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSSCCT
T ss_pred -------EEHHHHHHHHHHHHHHHCCC----------CCCEEEEEEECCCCCCCCCCCC
T ss_conf -------00035677776556752048----------9960899977546746875753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.1e-26 Score=217.93 Aligned_cols=149 Identities=26% Similarity=0.344 Sum_probs=112.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-----------------CCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCC
Q ss_conf 8899992899997799999983963-----------------45555751375203681033210000000134345779
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNV-----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-----------------~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
.+|+|+||+|||||||+++|++..- .....+|||++++...+.+. ..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~----------------~~ 67 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA----------------KR 67 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------------SC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEEC----------------CE
T ss_conf 19999947898499999999998523047741135431134557755875798437999708----------------81
Q ss_pred CEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 789991999831167887103666613998614689978889999998712993-6999931244347645888138999
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiDl~~~w~~~~~a~~~~~ 936 (1384)
.++|||||||.+|+..+.++++.+|+||||||+.+|+++||+++|.++..+++| +||++||||++..
T Consensus 68 ~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~------------ 135 (204)
T d2c78a3 68 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD------------ 135 (204)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC------------
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------------
T ss_conf 89998289826549999999987899999998999984789999999998599938999985366798------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99764999999999999999999980782133201247898314994787679
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1384)
Q Consensus 937 l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TG 989 (1384)
...|......+...+...++. ...++++|+||+.|
T Consensus 136 --------~~~~~~~~~~i~~~l~~~~~~----------~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 136 --------PELLDLVEMEVRDLLNQYEFP----------GDEVPVIRGSALLA 170 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECHHH
T ss_conf --------899999999999998744999----------65423400232244
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.4e-27 Score=223.15 Aligned_cols=141 Identities=28% Similarity=0.326 Sum_probs=108.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEE-EEEECCCCCCCCHHHCCC---CCCCCCCCEEEEEC
Q ss_conf 01689988999928999977999999839634555575137520-368103321000000013---43457797899919
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-ATYFPAENIRERTRELKA---NATLKVPGLLVIDT 864 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~ig-a~~~~~~~i~~~~~~i~~---~~~~~~~~i~iIDT 864 (1384)
..++|| |+|+||+|||||||+++|++..-...+.|.+..... ..+.+.+ +.|..++.. .+.|+...|+||||
T Consensus 3 ~~~iRn--i~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E--~~r~~si~~~~~~~~~~~~~~n~iDt 78 (276)
T d2bv3a2 3 LKRLRN--IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQE--RERGITITAAVTTCFWKDHRINIIDA 78 (276)
T ss_dssp GGGEEE--EEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEEEEEETTEEEEEECC
T ss_pred HHHCEE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHH--HHCCCCCCCCEEEECCCCEEEEEECC
T ss_conf 302029--99995898998999999999648534023365184698565888--75188600112343159838999527
Q ss_pred CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9983116788710366661399861468997888999999871299369999312443476458881389999976
Q 000626 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|||.+|...+.++++.+|+||||||+.+|+++||...|+++..+++|+|++|||||+. +++|...+...
T Consensus 79 PG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~-------~ad~~~~l~ei 147 (276)
T d2bv3a2 79 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT-------GADLWLVIRTM 147 (276)
T ss_dssp CSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTST-------TCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCCCHHHHHH
T ss_conf 8602269999999996300577322567744669999999998599979998644565-------43121268999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.94 E-value=6.8e-26 Score=212.00 Aligned_cols=127 Identities=20% Similarity=0.330 Sum_probs=94.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEE---EECCCCCCCCHHHCCC-CCCCCCCCEEEEECCCC
Q ss_conf 8998899992899997799999983963455557513752036---8103321000000013-43457797899919998
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT---YFPAENIRERTRELKA-NATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~---~~~~~~i~~~~~~i~~-~~~~~~~~i~iIDTPGH 867 (1384)
+|| |+|+||+|||||||+++|++..-.....|.+.. |.+ +.+.+..+..+..... ...|+...++|||||||
T Consensus 2 iRN--v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~--g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh 77 (267)
T d2dy1a2 2 IRT--VALVGHAGSGKTTLTEALLYKTGAKERRGRVEE--GTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 77 (267)
T ss_dssp EEE--EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGG--TCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred EEE--EEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHH--CCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCH
T ss_conf 509--999948898099999999997097553066222--2113562698887387687510222234321068806815
Q ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 3116788710366661399861468997888999999871299369999312443
Q 000626 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~ 922 (1384)
.+|+..+.++++.+|+||||||+.+|+++||.++|+++..+++|+||++||||+.
T Consensus 78 ~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 78 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 5433556543124673389842357742115788776554044310133320222
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.94 E-value=2.9e-26 Score=214.85 Aligned_cols=176 Identities=29% Similarity=0.314 Sum_probs=127.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---CCCCCCCCEEEEEEEEEECCCCCCCCHHHCC-CC------CCCCCCCEEEEECC
Q ss_conf 89999289999779999998396---3455557513752036810332100000001-34------34577978999199
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELK-AN------ATLKVPGLLVIDTP 865 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~~~~~i~-~~------~~~~~~~i~iIDTP 865 (1384)
+|+|+||||||||||+++|++.. ......+|+|+.++..++.+........... .. .......++|||||
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtP 86 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 86 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEECCC
T ss_conf 99999345884999999997034466689997176533342122231353021034225665541020575047652431
Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98311678871036666139986146899-78889999998712993-69999312443476458881389999976499
Q 000626 866 GHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 866 GHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~vP-~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||.+|...+.++++.+|++|||||+.+|+ .+||.+++.++..+++| +||++||||+.. ...
T Consensus 87 Gh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d-------~~~---------- 149 (195)
T d1kk1a3 87 GHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD-------KEK---------- 149 (195)
T ss_dssp SHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-------HHH----------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-------HHH----------
T ss_conf 035566776533222233100001135666531679999999823755234541233024-------688----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999999980782133201247898314994787679891147999999999
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 944 i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
+...+..+...+...+ ...+||||+||++|+||+.|+..|..++|
T Consensus 150 ----~~~~~~~~~~~~~~~~------------~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 150 ----ALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp ----HHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHHCCCC------------CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf ----8879999999963004------------79886999877889798999999897780
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=2.6e-26 Score=215.25 Aligned_cols=176 Identities=28% Similarity=0.318 Sum_probs=118.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCEEEEEEEEEECC----CCCCCC---HHHCCC-----CCCCCCCCEE
Q ss_conf 8999928999977999999839634---555575137520368103----321000---000013-----4345779789
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPA----ENIRER---TRELKA-----NATLKVPGLL 860 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~----~~i~~~---~~~i~~-----~~~~~~~~i~ 860 (1384)
+|+|+||||||||||+++|++.... .....+++...+...... .....+ ...... ......+.++
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 89 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 89 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 89999724886999999997041212288987602210361343356566543320254113423443310256437889
Q ss_pred EEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 9919998311678871036666139986146899-7888999999871299-3699993124434764588813899999
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 861 iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~v-P~IVviNKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
|||||||.+|+..+.+|+..||++|||||+.+|+ +.||+++|.++..+++ |+||++||||++. ...
T Consensus 90 iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~-------~~~----- 157 (205)
T d2qn6a3 90 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS-------KEE----- 157 (205)
T ss_dssp EEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSC-------HHH-----
T ss_pred EECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC-------CHH-----
T ss_conf 84261388887640142502664420000014013326789999999819832654145678765-------147-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 764999999999999999999980782133201247898314994787679891147999999999
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
+......+...+... +...+|+||+||++|.||.+|+..|.++++
T Consensus 158 ---------~~~~~~~~~~~l~~~------------~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 158 ---------ALSQYRQIKQFTKGT------------WAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp ---------HHHHHHHHHHHHTTS------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---------HHHHHHHHHHHHCCC------------CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf ---------899999999985311------------689886999767888784999998885289
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-26 Score=217.55 Aligned_cols=157 Identities=28% Similarity=0.401 Sum_probs=120.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC--CCC-----------------------------CCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 88999928999977999999839--634-----------------------------55557513752036810332100
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t--~v~-----------------------------~geagGITq~iga~~~~~~~i~~ 843 (1384)
.+|+|+||||||||||+++|++. .+. ..+.+|||++++..++.+..
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--- 83 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 83 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS---
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEECCCC---
T ss_conf 47999947899899999999998189668899999999998368764200003530243224001244204762499---
Q ss_pred CHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 00000134345779789991999831167887103666613998614689-------978889999998712993-6999
Q 000626 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE-FIVA 915 (1384)
Q Consensus 844 ~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~ll~~~~vP-~IVv 915 (1384)
+.++|||||||.+|+.++.+|++.+|+||||||+..| +++||+++|.++..+++| +|||
T Consensus 84 -------------~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~ 150 (239)
T d1f60a3 84 -------------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 150 (239)
T ss_dssp -------------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred -------------EEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------------8999998989688899999999975889999989988541455731769999999998499808999
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 93124434764588813899999764999999999999999999980782133201247898314994787679891147
Q 000626 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1384)
Q Consensus 916 iNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eL 995 (1384)
+||||++ +|. ...|......+...+...+++. ..++++|+||.+|.||.+.
T Consensus 151 iNKmD~~-~~d------------------~~~~~~~~~el~~~l~~~~~~~----------~~i~~ipiSa~~G~ni~~~ 201 (239)
T d1f60a3 151 VNKMDSV-KWD------------------ESRFQEIVKETSNFIKKVGYNP----------KTVPFVPISGWNGDNMIEA 201 (239)
T ss_dssp EECGGGG-TTC------------------HHHHHHHHHHHHHHHHHHTCCG----------GGCCEEECCTTTCBTTTBC
T ss_pred EECCCCC-CCC------------------HHHHHHHHHHHHHHHHHCCCCC----------CCEEEEEEECCCCCCCEEC
T ss_conf 9888788-888------------------8999999998999997418998----------8179999885477765521
Q ss_pred H
Q ss_conf 9
Q 000626 996 L 996 (1384)
Q Consensus 996 l 996 (1384)
.
T Consensus 202 s 202 (239)
T d1f60a3 202 T 202 (239)
T ss_dssp C
T ss_pred C
T ss_conf 4
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.93 E-value=6.1e-26 Score=212.34 Aligned_cols=123 Identities=24% Similarity=0.520 Sum_probs=116.7
Q ss_pred EECCEEEEECCCCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCH
Q ss_conf 00030466615620168999589899963067309977605991321257710112364323333798089998349960
Q 000626 1251 AVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1330 (1384)
Q Consensus 1251 av~p~~l~i~~~~vf~~~~p~IaG~~V~~G~ik~g~~i~v~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~ 1330 (1384)
.||||+|+|+|+||||+++|+|+|++|..|+|++|++|++..+ -.+|+|.||+.+++++++|..|++|||+|.|.
T Consensus 1 ~v~P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~--~~~g~VksIq~~~~~v~~A~~G~~Vai~I~g~--- 75 (128)
T d1g7sa2 1 IIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAIKDA--- 75 (128)
T ss_dssp SCCCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEEETC---
T ss_pred CCEEEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCC--CCEEEEEEEEECCCCCCEECCCCEEEEEECCC---
T ss_conf 9051799976876752799859999993526308997998899--93589999999882111782899899997685---
Q ss_pred HHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 0000115324679959994434569999999430189989999999753217
Q 000626 1331 EQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFK 1382 (1384)
Q Consensus 1331 ~~~~~~gr~f~~~d~l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~ 1382 (1384)
+|||||++||.|||.|||++|++|+++|+++|+.++|+||.+|+++..
T Consensus 76 ----~~gr~i~~gD~L~s~i~~~~i~~lk~~~~~~l~~~e~~ll~el~~ikr 123 (128)
T d1g7sa2 76 ----VYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKR 123 (128)
T ss_dssp ----CBTTTBCTTCEEEECCCHHHHHTTTSCC---CCHHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf ----337789988899996998999999999886689999999999999755
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.93 E-value=9.2e-26 Score=210.96 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCC----------CCCCCEEEEEEEEEECCCCCCCCHHHCCC---CCCCCCCCEE
Q ss_conf 89999289999779999998396--345----------55575137520368103321000000013---4345779789
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTN--VQE----------GEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGLL 860 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~----------geagGITq~iga~~~~~~~i~~~~~~i~~---~~~~~~~~i~ 860 (1384)
+||||||||||||||+++|++.. +.. ...+.....+..........+.+..++.. ...+..+.++
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~ 105 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFS 105 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99999527989999999999984994588999999887742775421134430233112468655444221211331035
Q ss_pred EEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEEECCCCC-CCCCCCCC
Q ss_conf 99199983116788710366661399861468997-------8889999998712993-699993124434-76458881
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FIVALNKVDRLY-GWKTCRNA 931 (1384)
Q Consensus 861 iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~-------~QT~E~l~ll~~~~vP-~IVviNKiDl~~-~w~~~~~a 931 (1384)
|+|||||.+|..++.+|++.+|+||||||+++|++ +||++++.++..+++| +||++||||++. .|..
T Consensus 106 ~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e---- 181 (245)
T d1r5ba3 106 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE---- 181 (245)
T ss_dssp ECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH----
T ss_pred EECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH----
T ss_conf 5425555442366652144303004678747776677653320229999999985999599999768877531217----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 3899999764999999999999999999980-782133201247898314994787679891147999
Q 000626 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 998 (1384)
Q Consensus 932 ~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~-Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~ 998 (1384)
..|...+..+...+... |++. ...++|||+||++|+||.+++..
T Consensus 182 --------------~~~~ei~~~l~~~l~~i~~~~~---------~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 182 --------------ERYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTSSCCCT
T ss_pred --------------HHHHHHHHHHHHHHHHHHCCCC---------CCCCEEEEEECCCCCCCCCCHHC
T ss_conf --------------8899999999999999837576---------56887999466678795121004
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.92 E-value=1.1e-25 Score=210.30 Aligned_cols=129 Identities=35% Similarity=0.692 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 18999999999899997632004873599708967699999872249802326774227653304989985310025872
Q 000626 1116 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYA 1195 (1384)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~V~~~DV~~A~~~~~~~~~~a 1195 (1384)
|.+.++++++.++.++ .+++...||||||||+||||||+.+|+. ++|||++++|||||++||++|+++...++.||
T Consensus 1 d~e~~~~~~~~e~~~~--~i~~~~~~viiKaDt~GSlEAi~~~L~~--~~i~i~~~~VG~it~~DV~~A~~~~~~~~~~a 76 (131)
T d1g7sa3 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYG 76 (131)
T ss_dssp SHHHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHHHHHTTCTTSC
T ss_pred CHHHHHHHHHHHHHHC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--CCCEEEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 9789999999998734--4554443789981884639999999973--57516886574664516889987421476671
Q ss_pred EEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99980899997799999980980998233778999999998233577777740
Q 000626 1196 TILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA 1248 (1384)
Q Consensus 1196 ~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~ 1248 (1384)
+||||||++++.+..+|++.||+|++|+|||||+|+|++||.+++++++++.+
T Consensus 77 ~IlgFnV~~~~~a~~~a~~~~V~i~~~~IIY~Lid~~~~~~~~~~~~~~~e~~ 129 (131)
T d1g7sa3 77 AIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWM 129 (131)
T ss_dssp EEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89998514692168999862983898080633899999999756571777862
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=5.2e-26 Score=212.90 Aligned_cols=175 Identities=27% Similarity=0.334 Sum_probs=113.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-C----CC-------CCCEEEEEEEEEECCCCCCCCHHHCCC---CCCCCCCCE
Q ss_conf 88999928999977999999839634-5----55-------575137520368103321000000013---434577978
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-E----GE-------AGGITQQIGATYFPAENIRERTRELKA---NATLKVPGL 859 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~----ge-------agGITq~iga~~~~~~~i~~~~~~i~~---~~~~~~~~i 859 (1384)
.+|||+||||||||||+++|++..-. . .+ .+..+.............+.++.++.. ...+..+.|
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCEE
T ss_conf 18999944799999999999998598328899999998875176655542014573344147765242179995188126
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEEECCCCC-CCCCCCC
Q ss_conf 99919998311678871036666139986146899-------78889999998712993-699993124434-7645888
Q 000626 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVDRLY-GWKTCRN 930 (1384)
Q Consensus 860 ~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~vP-~IVviNKiDl~~-~w~~~~~ 930 (1384)
+|||||||.+|+.++.+|++.||+||||||+.+|+ ++||++++.++..++++ +||++||||++. .|.
T Consensus 84 ~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~---- 159 (224)
T d1jnya3 84 TIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD---- 159 (224)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC----
T ss_pred EEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC----
T ss_conf 8751898487899999999750657998741557545422444224999999998099834899980357775311----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 1389999976499999999999999999998078213320124789831499478767989114799
Q 000626 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLL 997 (1384)
Q Consensus 931 a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~ 997 (1384)
...|......+...+...+++ ...+++||+||.+|.||.....
T Consensus 160 --------------~~~~~~v~~~i~~~~~~~~~~----------~~~i~~IPISA~~G~NV~~~s~ 202 (224)
T d1jnya3 160 --------------EKRYKEIVDQVSKFMRSYGFN----------TNKVRFVPVVAPSGDNITHKSE 202 (224)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCC----------CTTCEEEECBTTTTBTTTBCCS
T ss_pred --------------HHHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECCCCCCCCCCCC
T ss_conf --------------788887799987678761898----------5667099977457888135642
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.9e-25 Score=205.37 Aligned_cols=189 Identities=22% Similarity=0.263 Sum_probs=123.7
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC--C--------------CCCCCCCEEEEEEEEEECCCCCCCCHHHCCC
Q ss_conf 00016899889999289999779999998396--3--------------4555575137520368103321000000013
Q 000626 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTN--V--------------QEGEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 787 ~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~--v--------------~~geagGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
....++|| |||+||+|||||||+++|+... + .....+|||+......+.+............
T Consensus 12 ~~~~~IRN--I~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~ 89 (341)
T d1n0ua2 12 DKVTNVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ 89 (341)
T ss_dssp HCGGGEEE--EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS
T ss_pred CCCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHC
T ss_conf 37316748--9999688886999999999977986635563232244645677568369678789994267655420100
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 43457797899919998311678871036666139986146899788899999987129936999931244347645888
Q 000626 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~ 930 (1384)
...++.+.|+|||||||.+|...+.++++.||+||||||+.+|+++||.++|+++...++|+||+|||||++......+.
T Consensus 90 ~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~~ 169 (341)
T d1n0ua2 90 KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSK 169 (341)
T ss_dssp CCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 23566537999737873889999998875237249998656682046999999998769986999877265554277669
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 138999997649999999999999999999807821--33201247898314994787679891
Q 000626 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT--ELYYKNKDRGETFNIVPTSAISGEGI 992 (1384)
Q Consensus 931 a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~--e~~~~~~~~g~~v~iVpvSA~TGeGI 992 (1384)
. .++..|...+..|-..+....-.. ..++ . ...-.++..||..|.+.
T Consensus 170 ~-----------~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~-~---P~~gnV~FaSa~~g~~F 218 (341)
T d1n0ua2 170 E-----------DLYQTFARTVESVNVIVSTYADEVLGDVQV-Y---PARGTVAFGSGLHGWAF 218 (341)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHHSCGGGCCCCC-C---GGGTCEEEEETTTTEEE
T ss_pred H-----------HHHHHHCCCCCCCCCEEEECCCCCCCCCCC-C---CCCCCEEECCCCCCEEE
T ss_conf 9-----------999997576530242201235533343012-7---44581675234467278
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=3e-23 Score=191.65 Aligned_cols=167 Identities=27% Similarity=0.391 Sum_probs=122.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-------CCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 6899889999289999779999998396345-------555751375203681033210000000134345779789991
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVID 863 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-------geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iID 863 (1384)
.+++.+|+|+||+|||||||+++|++..... ....|+|...+...+. +...+++++|
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~d 65 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK----------------LENYRITLVD 65 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE----------------ETTEEEEECC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCC----------------CCCCCCCCCC
T ss_conf 989879999907787099999999974395620223300121330222300001----------------3785211012
Q ss_pred CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99983116788710366661399861468997888999999871299369999312443476458881389999976499
Q 000626 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|...+.+++..+|+++||+|+.+|+.+||++++..+...++|+|+|+||||++. .+.....
T Consensus 66 ~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~-------~~~~~~~------ 132 (179)
T d1wb1a4 66 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TEEIKRT------ 132 (179)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HHHHHHH------
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC-------HHHHHHH------
T ss_conf 532232100012344302432121222221102345445555525976201123234457-------7888889------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999807821332012478983149947876798911479999999999
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 944 i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
..+...+....++ ...+++||+||++|+||++|++.|...++.
T Consensus 133 ---------~~~~~~~~~~~~~----------~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 133 ---------EMIMKSILQSTHN----------LKNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp ---------HHHHHHHHHHSSS----------GGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf ---------9999999987505----------788738998766782999999999961886
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=1.5e-17 Score=147.75 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=110.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCC-
Q ss_conf 68998899992899997799999983963--455557513752036810332100000001343457797899919998-
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGH- 867 (1384)
...-|.|+|+|++|+|||||+++|++... ......+.|.++...... ..+.++|++|.
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~~~d~~~~~ 80 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-------------------DELHFVDVPGYG 80 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-------------------TTEEEEECCCBC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCC-------------------CCCEEEEEEEEC
T ss_conf 8899899998999987999999852987468860346512301211245-------------------431378887513
Q ss_pred ------------CCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHH
Q ss_conf ------------31167887103666613998614689978889999998712993699993124434764588813899
Q 000626 868 ------------ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 868 ------------e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~ 935 (1384)
..+.....+++..+|++++|||+.+++..++.++++++..+++|+|||+||+|++. ...+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~------~~~~~~ 154 (195)
T d1svia_ 81 FAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP------KGKWDK 154 (195)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------GGGHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCC------HHHHHH
T ss_conf 32112221110366776543112110122221201456421222110000025575110001203258------888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99976499999999999999999998078213320124789831499478767989114799999999
Q 000626 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 936 ~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
. +..+...+ + .....+++++||.+|+||.+|+.+|..++
T Consensus 155 ~---------------~~~~~~~l---~-----------~~~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 155 H---------------AKVVRQTL---N-----------IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp H---------------HHHHHHHH---T-----------CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H---------------HHHHHHHH---C-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9---------------99999986---4-----------16999789996889989999999999982
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.2e-17 Score=148.50 Aligned_cols=156 Identities=24% Similarity=0.315 Sum_probs=111.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC------
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831------
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~------ 869 (1384)
.|+|+|++++|||||+++|++..+..+..+|+|+++..+. + ..+.||||||+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~--~------------------~~~~ivDtpG~~~~~~~~~ 61 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--W------------------KNHKIIDMPGFGFMMGLPK 61 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--E------------------TTEEEEECCCBSCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCC--C------------------CCCEECCCCCCEECCCCCC
T ss_conf 8999999998899999999689853527897720454244--2------------------2311003677500121111
Q ss_pred ---------HHHHHHHCCCCCCEEEEEEECC-----------CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf ---------1678871036666139986146-----------89978889999998712993699993124434764588
Q 000626 870 ---------FTNLRSRGSGLCDIAILVVDIM-----------HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 870 ---------F~~~r~rg~~~aDiaILVVDa~-----------~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~ 929 (1384)
+......++..+|++++|||+. .++..+..+.+.++...++|+|||+||+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~----- 136 (184)
T d2cxxa1 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN----- 136 (184)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-----
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHH-----
T ss_conf 122221024566665301113300266422355101113433132077899999999849988998764322435-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8138999997649999999999999999999807821332012478983149947876798911479999999999
Q 000626 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
. ...+ ..+. ......+. . ....++|+||++|.||.+|+..|..++++
T Consensus 137 -~--~~~~---------------~~~~-~~~~~~~~--~--------~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 137 -V--QEVI---------------NFLA-EKFEVPLS--E--------IDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp -H--HHHH---------------HHHH-HHHTCCGG--G--------HHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -H--HHHH---------------HHHH-HHHCCCCC--C--------CCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf -7--8899---------------9999-98456511--2--------68738999778898999999999987569
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.8e-18 Score=154.84 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 6899889999289999779999998396345-555751375203681033210000000134345779789991999831
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~ 869 (1384)
+.+.++|+|+|++++|||||+++|++.++.. +...+.|............ ..+.+|||||+..
T Consensus 2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~----------------~~~~~~DtpG~~~ 65 (178)
T d1wf3a1 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR----------------RQIVFVDTPGLHK 65 (178)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT----------------EEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEE----------------EEEEECCCCCCCC
T ss_conf 854769999999999999999999688850331557732211211133200----------------1355303443111
Q ss_pred H--------HHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1--------67887103666613998614689978889999998712--9936999931244347645888138999997
Q 000626 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 870 F--------~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~--~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
+ .....+++..||++|||+|+.+++..+...++..++.. ++|+|+|+||+|+.. ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~------~~~------- 132 (178)
T d1wf3a1 66 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK------YPE------- 132 (178)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS------SHH-------
T ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCHHHHEECCCCCHHHHHHHCCCCCCC------CHH-------
T ss_conf 1222200001111222233200356551266301321120121001232202222000160001------889-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 6499999999999999999998078213320124789831499478767989114799999999
Q 000626 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 940 q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.....+... .....++++||++|.||.+|+..|..++
T Consensus 133 --------------~~~~~~~~~-------------~~~~~~~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 133 --------------EAMKAYHEL-------------LPEAEPRMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp --------------HHHHHHHHT-------------STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHH-------------CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf --------------999999862-------------1468659996678979999999999848
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=2e-17 Score=146.84 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=109.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC-----
Q ss_conf 8999928999977999999839634-5555751375203681033210000000134345779789991999831-----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~----- 869 (1384)
.|+|+|++++|||||+++|++.... .+...+.|.......+.... ..+.++||||...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~~~~ 65 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG----------------KTFKLVDTCGVFDNPQDI 65 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT----------------EEEEEEECTTTTSSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCCC----------------CCCCCCCCCCEEEEECCC
T ss_conf 8999999999899999999677753031447635313222122122----------------111112454213210122
Q ss_pred ----HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ----1678871036666139986146899788899999987129936999931244347645888138999997649999
Q 000626 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~ 945 (1384)
+.......+..+|++++++++.+++..+..+++.++...++|+|||+||+|++..
T Consensus 66 ~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~--------------------- 124 (171)
T d1mkya1 66 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--------------------- 124 (171)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---------------------
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---------------------
T ss_conf 33222200002355571899960112112222111122222222110013102334556---------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998078213320124789831499478767989114799999999998
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~ 1006 (1384)
.-..+...+...+ ..++||+||++|.||++|+.+|..++++.
T Consensus 125 -----~~~~~~~~~~~~~--------------~~~~i~iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 125 -----FEREVKPELYSLG--------------FGEPIPVSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp -----HHHHTHHHHGGGS--------------SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf -----5667889998618--------------99769996678989999999999869777
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.8e-17 Score=147.25 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=109.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCC----
Q ss_conf 988999928999977999999839634-555575137520368103321000000013434577978999199983----
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe---- 868 (1384)
...|+|+||+++|||||+++|++.+.. .+...+.|.......+.+. ...+.++||||+.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~~ 71 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID----------------GRKYVFVDTAGLRRKSR 71 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET----------------TEEEEESSCSCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCC----------------CCEEEEECCCCCCCCCC
T ss_conf 88899999999999999999977876224225654333200122049----------------92346523688510122
Q ss_pred --------CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------116788710366661399861468997888999999871299369999312443476458881389999976
Q 000626 869 --------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 869 --------~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
.+.....+.+..||+++||+|+.+|+..++..++.++...+.|+|+++||+|++.. ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~------~~~------- 138 (186)
T d1mkya2 72 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH------REK------- 138 (186)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT------GGG-------
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCC------HHH-------
T ss_conf 1222210001177898986099999960345650266889999999708860530010001101------011-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4999999999999999999980782133201247898314994787679891147999999999
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
. +..+...+..... +..+++++++||++|.||.+|+..|...+.
T Consensus 139 ---~-------~~~~~~~~~~~~~----------~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 139 ---R-------YDEFTKLFREKLY----------FIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp ---C-------HHHHHHHHHHHCG----------GGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---H-------HHHHHHHHHHHHC----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ---0-------2568999998851----------168980899867899899999999999997
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.74 E-value=5.2e-18 Score=151.32 Aligned_cols=199 Identities=21% Similarity=0.167 Sum_probs=117.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCC---CCC----------------HHH----CCCC
Q ss_conf 88999928999977999999839634555575137520368103321---000----------------000----0134
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI---RER----------------TRE----LKAN 851 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i---~~~----------------~~~----i~~~ 851 (1384)
.||+|+||+|+|||||+++|+.........+.|+.+.+....+.... +.. +.. +...
T Consensus 1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (244)
T d1yrba1 1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK 80 (244)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 98999918998399999999998843876899966766445788645309999887877676403677512202867766
Q ss_pred ---------CCCCCCCEEEEECCCCCCHHHHHHHCCCCC-----CEEEEEEECCCCCCHHHHHHHHHH-----HHCCCCE
Q ss_conf ---------345779789991999831167887103666-----613998614689978889999998-----7129936
Q 000626 852 ---------ATLKVPGLLVIDTPGHESFTNLRSRGSGLC-----DIAILVVDIMHGLEPQTIESLNLL-----KMRNTEF 912 (1384)
Q Consensus 852 ---------~~~~~~~i~iIDTPGHe~F~~~r~rg~~~a-----DiaILVVDa~~Gv~~QT~E~l~ll-----~~~~vP~ 912 (1384)
.......+.++|||||..+...+.++...+ +++++|+|+..+.++|+..++.+. ....+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (244)
T d1yrba1 81 FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATT 160 (244)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999841256543654366531478899999999863247658999636556675047669999999998707874
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 99993124434764588813899999764999999999999999999980782133201247898314994787679891
Q 000626 913 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1384)
Q Consensus 913 IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI 992 (1384)
|+++||+|++. .+....+..+...+.. +...+..... ....+...+.....++...+|++|+||++|+||
T Consensus 161 ivvinK~D~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi 230 (244)
T d1yrba1 161 IPALNKVDLLS-------EEEKERHRKYFEDIDY-LTARLKLDPS--MQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 230 (244)
T ss_dssp EEEECCGGGCC-------HHHHHHHHHHHHCHHH-HHHHHHHCCS--HHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH
T ss_pred EEEEECCCCCC-------HHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 26653201435-------7788899998888999-9999853367--899999999877886379981899879999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 14799999999
Q 000626 993 PDLLLLLVQWT 1003 (1384)
Q Consensus 993 ~eLl~~L~~l~ 1003 (1384)
.+|+.+|..++
T Consensus 231 ~~L~~~l~e~~ 241 (244)
T d1yrba1 231 EDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999971
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=2.4e-16 Score=138.56 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=98.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE--EEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCC----
Q ss_conf 8899992899997799999983963455557513--7520368103321000000013434577978999199983----
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe---- 868 (1384)
|.|+|+|++++|||||+++|++..+......+.| ..++..... ....+.||||||+.
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~~DtpG~~~~~~ 64 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-----------------EEERFTLADIPGIIEGAS 64 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-----------------SSCEEEEEECCCCCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEECEEEEC-----------------CCCEEEECCCCEEECCCH
T ss_conf 889998999998999999996899715346897166656415523-----------------787489828880652751
Q ss_pred ---CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHH-HHH-----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---1167887103666613998614689978889999-998-----7129936999931244347645888138999997
Q 000626 869 ---SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 869 ---~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
.+.....+.+..++++++|+|+...... +...+ ..+ ...+.|+|+|+||+|+.. ...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~------ 130 (180)
T d1udxa2 65 EGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLETLRKEVGAYDPALLRRPSLVALNKVDLLE-------EEA------ 130 (180)
T ss_dssp GSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-------HHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------HHH------
T ss_conf 7779999999987753456653001246532-10133444311220001021101155665552-------778------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 64999999999999999999980782133201247898314994787679891147999999999
Q 000626 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 940 q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
+..+...+.. ..+++|++||+||+||++|+..|..+++
T Consensus 131 ------------~~~~~~~~~~---------------~~~~~~~iSA~tg~gid~L~~~i~~~l~ 168 (180)
T d1udxa2 131 ------------VKALADALAR---------------EGLAVLPVSALTGAGLPALKEALHALVR 168 (180)
T ss_dssp ------------HHHHHHHHHT---------------TTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH---------------CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ------------9999999975---------------6983899976788899999999999876
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=9.3e-16 Score=133.97 Aligned_cols=156 Identities=16% Similarity=0.095 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|++..+.....+.++..+....+..... ...+.||||||++.|..++.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~wDt~G~e~~~~~~~ 72 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK--------------RIKLQIWDTAGQERYRTITT 72 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECC--------------EEEEEEEECCCCHHHHHHHH
T ss_conf 9999999991989999999739888651455553104689986243--------------69999998998554588999
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHH-HHH---HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1036666139986146899788899-999---987129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLN---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~---ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-...... .+. .......|++|+.||+|+.... ..+.
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~v~~------------------ 130 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----VVSS------------------ 130 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC----CCCH------------------
T ss_conf 997438778999978110434312344332102367752488997311422233----2110------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078213320124789831499478767989114799999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+.......| ++++.|||++|.||.+++..|+..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 131 -ERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp -HHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCC---------------CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -36677998759---------------8899956999959999999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.2e-15 Score=129.87 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=106.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|....+.....+.+........+.... ....+.||||||++.|..++.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~~~~~~~ 72 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG--------------KYVKLQIWDTAGQERFRSVTR 72 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT--------------EEEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC--------------CCEEEEEEECCCCHHHHHHHH
T ss_conf 999999999099999999970988865553310102567997167--------------101588997898333146578
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HH---HHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-99---87129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l---l~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
+.++.+|++|+|+|.++.........| .. ....++|+||+.||+|+..... ....
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~----------------- 131 (174)
T d2bmea1 73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VTFL----------------- 131 (174)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHH-----------------
T ss_pred HHHHHCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHC----HHHH-----------------
T ss_conf 8865277999999555405677776530111124687318999970344321000----0145-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
.+ ..+... ..++++.+||++|.||.+++.+|+..+-.
T Consensus 132 --~~-~~~~~~--------------~~~~~~e~Sak~~~gi~e~f~~l~~~i~~ 168 (174)
T d2bmea1 132 --EA-SRFAQE--------------NELMFLETSALTGENVEEAFVQCARKILN 168 (174)
T ss_dssp --HH-HHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --78-999985--------------79889994079896999999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.9e-16 Score=134.11 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=107.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|....+......+++..+....+...... ..+.||||||++.|..++.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~Dt~G~e~~~~~~~ 72 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK--------------VKLQIWDTAGQERFRSITQ 72 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE--------------EEEEEEEECCSGGGHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEE--------------EEEEEEECCCCHHHHHHHH
T ss_conf 99999999919899999997299987646655423789999999999--------------9999998998543588999
Q ss_pred HCCCCCCEEEEEEECCCCCCH-HHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978-8899999987---129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
.+++.+|++|+|+|.++.... ....++..+. ...+|+|++.||+|+... ..+..
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~------~~v~~---------------- 130 (171)
T d2ew1a1 73 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER------REVSQ---------------- 130 (171)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CSSCH----------------
T ss_pred HHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC------CCHHH----------------
T ss_conf 99743266888422143200112456655420133463568999962142200------00235----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+....... .+++++|||+||.||.+++..|+..
T Consensus 131 -~~~~~~~~~~---------------~~~~~~~SAktg~gV~e~f~~l~~~ 165 (171)
T d2ew1a1 131 -QRAEEFSEAQ---------------DMYYLETSAKESDNVEKLFLDLACR 165 (171)
T ss_dssp -HHHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -6777899867---------------9789997469998989999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=5.2e-16 Score=135.95 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=110.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|++..+......+++..+....+..+... ..|.||||||++.|..++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~l~i~D~~G~e~~~~~~~ 73 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR--------------IKLQIWDTAGQERFRTITT 73 (173)
T ss_dssp EEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE--------------EEEEEEEC---------CC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEE--------------EEEEEEECCCCHHHHHHHH
T ss_conf 99999999949999999997098887547645412789999999999--------------9999998998564588999
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHH----HHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1036666139986146899788899----999987129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E----~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.||++|+|+|+++...-.... .+......++|+|++.||+|+... ......
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~----~~~~~~----------------- 132 (173)
T d2fu5c1 74 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKE----------------- 132 (173)
T ss_dssp TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC----CCSCHH-----------------
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH----CCCHHH-----------------
T ss_conf 85269989999998987144899988887765330478529999821452000----130799-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999980782133201247898314994787679891147999999999989
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l 1007 (1384)
.+....... .++++.+||.+|+||.+++.+|+..+...+
T Consensus 133 --~~~~~~~~~---------------~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 133 --RGEKLALDY---------------GIKFMETSAKANINVENAFFTLARDIKAKM 171 (173)
T ss_dssp --HHHHHHHHH---------------TCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf --998778755---------------988999957999898999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.5e-15 Score=129.56 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=107.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|++..+......+++..+....+..+... ..+.||||||++.|..++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~D~~g~~~~~~~~~ 71 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTR 71 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE--------------EEEEEEECTTGGGTCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEE--------------EEEEEECCCCCHHHHHHHH
T ss_conf 99999999949899999997299887565443432125799989999--------------9888715677336778888
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHH-HHHHHH---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889-999998---7129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.+|++|+|+|+++.-.-+.. ..+..+ .....|+|++.||+|+...+.. ..
T Consensus 72 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~----~~------------------ 129 (166)
T d1z0fa1 72 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV----TY------------------ 129 (166)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----CH------------------
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCC----HH------------------
T ss_conf 87237858999740675677777888899998614565239998036565321022----79------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+....... .++++.|||+||.||.+++..|+..
T Consensus 130 -~~~~~~~~~~---------------~~~~~e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 130 -EEAKQFAEEN---------------GLLFLEASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp -HHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -9999999985---------------9989998689997999999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.65 E-value=3.5e-15 Score=129.51 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|....+.....+++...+ ..+.... ..+++|||||+..|...+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~----------------~~~~i~D~~G~~~~~~~~~ 65 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN----------------VTIKLWDIGGQPRFRSMWE 65 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT----------------EEEEEEEECCSHHHHTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE--EEEEEEE----------------EEEEEEECCCCCCCCCCCC
T ss_conf 999999999898999999971978874056410244--2454226----------------8888840100012112222
Q ss_pred HCCCCCCEEEEEEECCCCCC-HHHHHHHHHH-H---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997-8889999998-7---12993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..+..++++|+|+|+.+... ......+..+ . ..++|++|++||+|+.. ..+..
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~------~~~~~---------------- 123 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG------ALDEK---------------- 123 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT------CCCHH----------------
T ss_pred CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH------HHHHH----------------
T ss_conf 22223310110133212211100246666655442146985899985256301------25678----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999807821332012478983149947876798911479999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
.+...+....+. ...++++++||++|+||.+++.+|+..
T Consensus 124 ---~i~~~~~~~~~~----------~~~~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 124 ---ELIEKMNLSAIQ----------DREICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp ---HHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf ---899999999888----------579989998585794999999999982
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=3.6e-15 Score=129.48 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=106.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+|++..+.....++++.......+..... ...|+||||||++.|..++
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~l~i~Dt~G~e~~~~~~ 72 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--------------TVKLQIWDTAGQERFRTIT 72 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE--------------EEEEEEECCTTTTTTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEE--------------EEEEEEEECCCCHHHHHHH
T ss_conf 89999999990989999999619888872885432578999999657--------------8999999899854357899
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHH-HHHHH---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 71036666139986146899788899-99998---712993699993124434764588813899999764999999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..+++.+|++|+|+|++....-+... .+..+ ....+|+||+.||+|+..... ...
T Consensus 73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----~~~----------------- 131 (194)
T d2bcgy1 73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----VEY----------------- 131 (194)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCH-----------------
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC----HHH-----------------
T ss_conf 99832587899999676234456676644556640467753999972145310232----158-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999807821332012478983149947876798911479999999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
......... ..++++.+||++|.||.+++..|+..+..
T Consensus 132 --~~~~~~~~~---------------~~~~~~e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 132 --DVAKEFADA---------------NKMPFLETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp --HHHHHHHHH---------------TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHC---------------CCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --887543321---------------47646998647576699999999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.65 E-value=1.6e-15 Score=132.19 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=103.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
|...|+|+|..++|||||+.+|.+..+.. .+.|..+....+... ...+.||||||+..|..
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~----------------~~~~~~~D~~G~~~~~~ 61 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDT---ISPTLGFNIKTLEHR----------------GFKLNIWDVGGQKSLRS 61 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSS---CCCCSSEEEEEEEET----------------TEEEEEEEECCSHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEEEEEEECCCC----------------CCCEEEEECCCCHHHHH
T ss_conf 92799999999989999999980899873---023575304301134----------------54303663376055415
Q ss_pred HHHHCCCCCCEEEEEEECCCCCC-HHHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88710366661399861468997-8889999998----712993699993124434764588813899999764999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
++...+..++++++|+|+.+-.. ......|..+ ...++|+||++||+|+... ...
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~~-------------- 121 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA------LSC-------------- 121 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC------CCH--------------
T ss_conf 777641210024022201232227888876665432101579966999741452012------678--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999998078213320124789831499478767989114799999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
......+....+ ....++++++||++|+||.+++.+|...+
T Consensus 122 -----~~~~~~~~~~~~----------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 122 -----NAIQEALELDSI----------RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp -----HHHHHHTTGGGC----------CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH----------HCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----999999986564----------33798899997888979899999999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.5e-15 Score=127.49 Aligned_cols=156 Identities=14% Similarity=0.092 Sum_probs=100.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+.........+.... ...+..+. ....|.||||||++.|..++.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~--~~~i~~~~--------------~~~~l~i~D~~g~e~~~~~~~ 66 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY--DRSIVVDG--------------EEASLMVYDIWEQDGGRWLPG 66 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---------CEEE--EEEEEETT--------------EEEEEEEEECC-------CHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEE--CCEEECCC--------------CCCCEEEEECCCCCCCCEECC
T ss_conf 99998989939999999981885677588156653--00100123--------------332103420111222000023
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-9987----12993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..++.+|++|||+|+++....+....| ..+. ...+|+|++.||+|+...+. -+...
T Consensus 67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----v~~~~--------------- 127 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSVDE--------------- 127 (168)
T ss_dssp HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----SCHHH---------------
T ss_pred CCHHHHHHHCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCC----HHHHH---------------
T ss_conf 10111110100013422222112121211000024555313798503655266511----06999---------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999807821332012478983149947876798911479999999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
........ .+++++|||++|.||.+++..|+..+..
T Consensus 128 ----~~~~~~~~---------------~~~~~e~Sak~~~~v~~~f~~l~~~i~~ 163 (168)
T d2gjsa1 128 ----GRACAVVF---------------DCKFIETSAALHHNVQALFEGVVRQIRL 163 (168)
T ss_dssp ----HHHHHHHH---------------TSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ----99999865---------------9889997279994999999999999988
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.64 E-value=4.7e-15 Score=128.57 Aligned_cols=155 Identities=25% Similarity=0.284 Sum_probs=102.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
|...|+|+|..++|||||+++|.+..+. .++...+.++.... +....+.+||+||+..|..
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~-----~~~~~~~~~~~~i~--------------~~~~~~~i~d~~g~~~~~~ 75 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQGFNIKSVQ--------------SQGFKLNVWDIGGQRKIRP 75 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETTEEEEEEE--------------ETTEEEEEEECSSCGGGHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCC-----CCEEEEEEEEEEEC--------------CCCEEEEEEECCCCCCCHH
T ss_conf 8779999999998999999999648777-----52023310589850--------------4885676763254210014
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCH-HHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 887103666613998614689978-889999998----712993699993124434764588813899999764999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
++...+..+|++|+|+|+++.... .....+..+ ...++|++|++||+|+... ...
T Consensus 76 ~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~------~~~-------------- 135 (176)
T d1fzqa_ 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA------APA-------------- 135 (176)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC------CCH--------------
T ss_conf 778876415526886204565424444455443344303699859999974054542------428--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999999999999980782133201247898314994787679891147999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
..+...+ ++... ....++++++||++|+||.+++.+|+.
T Consensus 136 -----~~~~~~~---~~~~~-------~~~~~~~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 136 -----SEIAEGL---NLHTI-------RDRVWQIQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp -----HHHHHHT---TGGGC-------CSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -----HHHHHHH---HHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf -----9999998---78777-------736988999869989899999999996
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.6e-15 Score=129.48 Aligned_cols=172 Identities=16% Similarity=0.087 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|.+..+........+..+....+..+....... ........+.+||||||+.|..++.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~dt~G~e~~~~~~~ 82 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS----SGKAFKVHLQLWDTAGQERFRSLTT 82 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC----CCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 999999999198999999961999986478654036678999901000013----4666358862555786456688999
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHHHH-HH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999999-87----12993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-LK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~l-l~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..+..+|++|+|+|+++...-+....|.. +. ....|++|+.||+|+...+. .+.
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----v~~----------------- 141 (186)
T d2f7sa1 83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VNE----------------- 141 (186)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SCH-----------------
T ss_pred HHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHC----CHH-----------------
T ss_conf 99726988999996323454114542112012213677842999963124102210----048-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998078213320124789831499478767989114799999999998998
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e 1009 (1384)
..+....... .++++++||++|+||.+++.+|+..+...+.+
T Consensus 142 --~e~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~ 183 (186)
T d2f7sa1 142 --RQARELADKY---------------GIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183 (186)
T ss_dssp --HHHHHHHHHT---------------TCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --9999999984---------------98899995899979899999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.2e-15 Score=128.20 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|+...+.....+.+....... ..... ....+.||||||++.|..++.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~-~~~~~--------------~~~~l~i~D~~g~~~~~~~~~ 68 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDG--------------KQVELALWDTAGLEDYDRLRP 68 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEETT--------------EEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCCC--------------CCEEEECCCCCCCCHHCCCCH
T ss_conf 999999899388999999971999887288224411221-00354--------------202450245676400000302
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH-----HHHHH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999-----99987--129936999931244347645888138999997649999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-----LNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-----l~ll~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
..++.+|++|||+|+++. .+.+. +..+. ..++|+||+.||+|+... ......+.......
T Consensus 69 ~~~~~~~~~ilv~d~~~~---~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~~~---- 135 (177)
T d1kmqa_ 69 LSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND------EHTRRELAKMKQEP---- 135 (177)
T ss_dssp GGCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC------HHHHHHHHHTTCCC----
T ss_pred HHCCCCHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH------HHHHHHHHHHHCCC----
T ss_conf 210310044342021025---78887888779999973899756886632566421------56789988751033----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998078213320124789831499478767989114799999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
............. +.++++.|||++|.||.+++..++..+
T Consensus 136 -v~~~e~~~~a~~~--------------~~~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 136 -VKPEEGRDMANRI--------------GAFGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp -CCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -5599999999981--------------996799935899969999999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6e-15 Score=127.75 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=108.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+++|.+..+.......++..+....+...... ..+.||||||++.|..++
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~Dt~G~~~~~~~~ 73 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK--------------AKLAIWDTAGQERFRTLT 73 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE--------------EEEEEEEECSSGGGCCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECCC--------------CEEEEEECCCCHHHHHHH
T ss_conf 289999989908899999997199887504422100036799995123--------------489999899846558899
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 710366661399861468997888-99999987----1299369999312443476458881389999976499999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT-~E~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
...+..+|++|+|+|+++....+. ...+..+. ....|++++.||.|....+ .+.
T Consensus 74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----v~~---------------- 132 (177)
T d1x3sa1 74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VDR---------------- 132 (177)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SCH----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC-----CCH----------------
T ss_conf 99976288899999897861221102221011024554430357874023333323-----348----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... .++++.+||++|+||.+++.+|+..+
T Consensus 133 ---~~~~~~~~~~---------------~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 133 ---NEGLKFARKH---------------SMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp ---HHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ---9999999977---------------98899984899979999999999997
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.3e-14 Score=123.27 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=103.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 899992899997799999983963455-5575137520368103321000000013434577978999199983116788
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
.|+|+|..++|||||+.+|+...+... ....+...+....+...... ..++||||||++.|..++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~Dt~G~e~~~~~~ 73 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK--------------VKLQMWDTAGQERFRSVT 73 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE--------------EEEEEEECCCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCE--------------EEEEEEECCCCHHHHHHH
T ss_conf 999999999299999999971998865412023003677788854838--------------999999899836668888
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHH-H---HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7103666613998614689978889999-9---98712993699993124434764588813899999764999999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~---ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
...++.+|++|+|+|..+....+....+ . .......|+|++.||+|....+. .+..
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----v~~~---------------- 133 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKRE---------------- 133 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCHH----------------
T ss_pred HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHCCC----CCHH----------------
T ss_conf 98614786558986287555503455554554431587735999973303032066----5699----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998078213320124789831499478767989114799999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.+....... .++++.+||++|.||.+++..|+..+
T Consensus 134 ---~~~~~~~~~---------------~~~~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 134 ---DGEKLAKEY---------------GLPFMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp ---HHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ---999999984---------------98799984898969999999999973
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=9.9e-15 Score=126.09 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=101.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+........+............ .....+.||||||++.|..++.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~~ 70 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG-------------DKVATMQVWDTAGQERFQSLGV 70 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS-------------SCCEEEEEECCC----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC-------------CCCCCCEEECCCCCHHHHHHHH
T ss_conf 999999999698999999970988876376545310123464057-------------6312012210387201246778
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH-HHHHH-------HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999-99987-------12993699993124434764588813899999764999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~-------~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
..+..+|++|||+|+++...-+.... +..+. ..++|+||++||+|+........ .
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~----~------------- 133 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS----E------------- 133 (175)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC----H-------------
T ss_pred HHHHCCCEEEEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHH----H-------------
T ss_conf 87521554899850012333211332011566664101356686799812422012212015----7-------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999998078213320124789831499478767989114799999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.....+... -+.+++++|||++|.||.+++..|++.+
T Consensus 134 ------~~~~~~~~~-------------~~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 134 ------KSAQELAKS-------------LGDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp ------HHHHHHHHH-------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHH-------------CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ------778899998-------------0997699991899949999999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-14 Score=123.60 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=107.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|.+..+......+++.......+..... ...+.||||||++.|..++.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~ 67 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--------------TIRLQLWDTAGQERFRSLIP 67 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSC--------------EEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCC--------------CEEEEECCCCCCCHHCCCHH
T ss_conf 8999998990989999999849998763662231000001105997--------------23565425688511000438
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH-HHHH---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999-9998---7129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..+..+|++|||+|..+....+.... |..+ ...++|+|++.||+|+.... ....
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~~~~------------------ 125 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR----QVSI------------------ 125 (164)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHHH------------------
T ss_conf 886166449996065543132666766899998508996499973103404544----5668------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078213320124789831499478767989114799999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... .++++.|||++|.||.+++..|+..+
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 126 -EEGERKAKEL---------------NVMFIETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp -HHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -8999999974---------------98799962899969999999999961
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.2e-14 Score=125.36 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=102.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+.....+++.............. ...+.+|||||+..|..++.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~ 69 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE--------------DVRLMLWDTAGQEEFDAITK 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE--------------EEEEEEECCTTGGGTTCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC--------------EEEEEEECCCCCCCHHHHHH
T ss_conf 9999998995989999999829888643543212211010110684--------------03565421378632103245
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH-HHHHHH--CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999-999871--299369999312443476458881389999976499999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~~--~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 952 (1384)
..++.+|++++|+|+.+...-+.... +..+.. .++|+|++.||+|+.... ....
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~----~v~~------------------- 126 (164)
T d1z2aa1 70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS----CIKN------------------- 126 (164)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC----SSCH-------------------
T ss_pred HHHCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCE----EEEE-------------------
T ss_conf 46306866999994232244430223433222238983277763257753444----5640-------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999807821332012478983149947876798911479999999
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+....... .++++++||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~---------------~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 127 EEAEGLAKRL---------------KLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp HHHHHHHHHH---------------TCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 2667799875---------------9879996069996999999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.60 E-value=3.4e-15 Score=129.61 Aligned_cols=159 Identities=23% Similarity=0.238 Sum_probs=104.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
+...|+|+|..++|||||+.+|.+....... .|.......+. +....+.+|||||+..|..
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~---~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~~~ 76 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVVTTK---PTIGFNVETLS----------------YKNLKLNVWDLGGQTSIRP 76 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC---SSTTCCEEEEE----------------ETTEEEEEEEEC----CCT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCEEEEEEE----------------ECCEEEEEEECCCCCCCCH
T ss_conf 6689999999999889999887338777643---30654799996----------------3889999995564200114
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88710366661399861468997888-99999987----12993699993124434764588813899999764999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT-~E~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
++...+..+|++|+|+|+++...... ...|..+. ..++|++|++||+|+... .+.
T Consensus 77 ~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~------~~~-------------- 136 (182)
T d1moza_ 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA------LSA-------------- 136 (182)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC------CCH--------------
T ss_conf 577651344068888641122110258999999877531477626999996256666------678--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999807821332012478983149947876798911479999999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
..+...+ ++... ....+++++|||++|+||.+++.+|...+..
T Consensus 137 -----~~i~~~~---~~~~~-------~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 137 -----SEVSKEL---NLVEL-------KDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp -----HHHHHHT---TTTTC-------CSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHH---HHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf -----9999999---99987-------6179889997798997999999999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1e-14 Score=125.95 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=105.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
+...|+|+|..++|||||+.+|+...+.....+..+.... ..+..+.. ...+.+|||+|+..|..
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~l~~~d~~g~~~~~~ 69 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGI--------------PARLDILDTAGQEEFGA 69 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTE--------------EEEEEEEECCCTTTTSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCCE--------------EEEEECCCCCCCCCCCC
T ss_conf 7279999997996989999999739997100344111002-57503983--------------30010121245532234
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCHHHHHHH-HHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 887103666613998614689978889999-998----712993699993124434764588813899999764999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
++...++.+|++|||+|.++...-.....| ..+ ...++|+||+.||+|+... .....
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~----~~~~~-------------- 131 (173)
T d2fn4a1 70 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ----RQVPR-------------- 131 (173)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG----CCSCH--------------
T ss_pred CCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHC----CCCCH--------------
T ss_conf 521120120034564011445662022312479998725678865999984060221----13540--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999999980782133201247898314994787679891147999999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
..+....... .++++.|||++|.||.+++..|+..+.
T Consensus 132 -----~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 132 -----SEASAFGASH---------------HVAYFEASAKLRLNVDEAFEQLVRAVR 168 (173)
T ss_dssp -----HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----2456788761---------------988999838999599999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=3.7e-15 Score=129.37 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=109.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|+...+.....++++..+....+...... ..+.||||||++.|..++.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~--------------~~~~i~Dt~G~~~~~~~~~ 69 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--------------VKLQIWDTAGQERFRTITT 69 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE--------------EEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEE--------------EEEEEEECCCCHHHHHHHH
T ss_conf 99999999967899999998688987637742303789999988989--------------9999998999555689999
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999----9987129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
+.++.+|++|+|+|.++.-..+....+ ........|+|++.||.|+... ....+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~------~~~~~---------------- 127 (166)
T d1g16a_ 70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR------VVTAD---------------- 127 (166)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC------CSCHH----------------
T ss_pred HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH------HHHHH----------------
T ss_conf 99734989999998997657999975440001014676504652110023321------11599----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
.+....... .++++++||++|+||.+++.+|+.++..
T Consensus 128 --~~~~~~~~~---------------~~~~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 128 --QGEALAKEL---------------GIPFIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp --HHHHHHHHH---------------TCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf --999999866---------------9769998799997999999999999996
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-14 Score=125.80 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+......+++.......+..+... ..+.||||||++.|..++.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~d~~g~e~~~~~~~ 71 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT--------------IKAQIWDTAGQERYRRITS 71 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE--------------EEEEEEECSSGGGTTCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEE--------------EEEEECCCCCCHHHHHHHH
T ss_conf 99999999909899999998299887656553210355799999988--------------8998425687377888889
Q ss_pred HCCCCCCEEEEEEECCCCCC-HHHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997-88899999987---129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..+..+|++|+|+|..+.-. ......+..+. ..++|+||+.||+|+... +.....
T Consensus 72 ~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~----~~~~~~----------------- 130 (175)
T d2f9la1 72 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVPTD----------------- 130 (175)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSCHH-----------------
T ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----CCCHHH-----------------
T ss_conf 77540675899997888654034788999999845899839999765154002----433699-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
........ ..++++++||++|.||.+++..|+..+..
T Consensus 131 --~~~~~~~~---------------~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 131 --EARAFAEK---------------NNLSFIETSALDSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp --HHHHHHHH---------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHCC---------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --98776404---------------68669999649996999999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=1.8e-15 Score=131.85 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=93.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCH----
Q ss_conf 8899992899997799999983963455557513752036810332100000001343457797899919998311----
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F---- 870 (1384)
+.|+|+|++++|||||+++|++.++......+.|.......+.+. ....+.||||||+...
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~---------------~~~~~~~~DtpG~~~~~~~~ 66 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD---------------DGRSFVMADLPGLIEGAHQG 66 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS---------------SSCEEEEEEHHHHHHHTTCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEEEEECEEEEC---------------CCCEEEEECCCCCCCCCHHH
T ss_conf 869998999987999999996899735558984475654505731---------------89689981478755676077
Q ss_pred ---HHHHHHCCCCCCEEEEEEECCC--CCCHH----HHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf ---6788710366661399861468--99788----899999987---12993699993124434764588813899999
Q 000626 871 ---TNLRSRGSGLCDIAILVVDIMH--GLEPQ----TIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 871 ---~~~r~rg~~~aDiaILVVDa~~--Gv~~Q----T~E~l~ll~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
.....+.+..|+.++++++... +.... +...+..+. ..++|+||++||+|++. ..
T Consensus 67 ~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~-------~~------ 133 (185)
T d1lnza2 67 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE-------AA------ 133 (185)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT-------HH------
T ss_pred HHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHH-------HH------
T ss_conf 89999999999985545520121034331023332233210100011103786023101243276-------89------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 764999999999999999999980782133201247898314994787679891147999999999
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
..+..+... ++...+++++||++|.||.+|+..|..+++
T Consensus 134 -----------~~~~~~~~~----------------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 134 -----------ENLEAFKEK----------------LTDDYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp -----------HHHHHHHHH----------------CCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHH----------------HCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----------999999997----------------326994899978889899999999999612
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.3e-14 Score=125.05 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89988999928999977999999839634555575137520368103321000000013434577978999199983116
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1384)
+|...|+|+|..++|||||+++|....+.....+.+............. ....+.||||+|+..|.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~ 67 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN--------------ELHKFLIWDTAGLERFR 67 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCEEEEECCCCHHHH
T ss_conf 7453899999899499999999973988864465300121122111233--------------32100353047741245
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHH-HH---HHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7887103666613998614689978889999-99---8712993699993124434764588813899999764999999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l---l~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
.++...+..+|++|||+|+.+.-.-.....| .. ......|++++.||+|+...+ .....
T Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~~------------- 130 (167)
T d1z0ja1 68 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR----EVMER------------- 130 (167)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC----CSCHH-------------
T ss_pred HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCC----CHHHH-------------
T ss_conf 7779987530545898630102455567776555440368862389962311010023----20489-------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999998078213320124789831499478767989114799999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.+....... .+++++|||++|.||.+++..|+..+
T Consensus 131 ------~~~~~~~~~---------------~~~~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 131 ------DAKDYADSI---------------HAIFVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp ------HHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ------HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ------999999984---------------99999993599979899999999707
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.5e-13 Score=116.99 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=77.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH-
Q ss_conf 9889999289999779999998396345555751375203681033210000000134345779789991999831167-
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~- 872 (1384)
.|+|+|+|++|+|||||+++|++..+. +++|.......+.. ....+.|||||||..+..
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~----------------~~~~~~l~D~~g~~~~~~~ 62 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADY----------------DGSGVTLVDFPGHVKLRYK 62 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTG----------------GGSSCEEEECCCCGGGTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC----CEEEECCEEEEEEE----------------CCEEEEEEECCCCCCHHHH
T ss_conf 889999999998899999999679999----82776242899985----------------8848999852555321367
Q ss_pred ---HHHHCCCCCCEEEEEEECCCCCC--HHH-------HHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf ---88710366661399861468997--888-------9999998712993699993124434
Q 000626 873 ---LRSRGSGLCDIAILVVDIMHGLE--PQT-------IESLNLLKMRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 873 ---~r~rg~~~aDiaILVVDa~~Gv~--~QT-------~E~l~ll~~~~vP~IVviNKiDl~~ 923 (1384)
.+...+..++.+++++|+..... ..+ ...+..+...++|+||++||+|++.
T Consensus 63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~ 125 (209)
T d1nrjb_ 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125 (209)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 999998876412456248997346233999999999999999998743698699998003455
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=8.2e-15 Score=126.72 Aligned_cols=147 Identities=23% Similarity=0.333 Sum_probs=100.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC-----
Q ss_conf 8999928999977999999839634-5555751375203681033210000000134345779789991999831-----
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~----- 869 (1384)
.|+|+|++++|||||+++|++..+. .....+.|.......+.... ..+.+|||||+..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~Dt~G~~~~~~~~ 65 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG----------------ILFRIVDTAGVRSETNDL 65 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT----------------EEEEEEESSCCCSSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECC----------------EEEEECCCCCCCCCCCCH
T ss_conf 8999999999999999999589963553035632111047997589----------------058861666612577007
Q ss_pred ---H-HHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---1-678871036666139986146899788899999987129936999931244347645888138999997649999
Q 000626 870 ---F-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 870 ---F-~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~ 945 (1384)
+ .....+.+..+|++|+|+|++++...+....+..+ ...++++++||+|+...+ +. .
T Consensus 66 ~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~------~~-~---------- 126 (160)
T d1xzpa2 66 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI------NE-E---------- 126 (160)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC------CH-H----------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHC--CCCCCEEEEEECCCCCHH------HH-H----------
T ss_conf 7889999999999869999999747888625666653312--243100234301343303------46-9----------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999980782133201247898314994787679891147999999
Q 000626 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
.+...+ +...++|++||++|.||++|+..|.+
T Consensus 127 --------~~~~~~----------------~~~~~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 127 --------EIKNKL----------------GTDRHMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp --------HHHHHH----------------TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred --------HHHHHH----------------CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf --------999984----------------79996799978899899999999976
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.8e-14 Score=121.61 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=101.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|+...+.....+.+..... ..+.... ....+.||||||++.|..++.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~~~l~i~D~~g~e~~~~~~~ 75 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 75 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSS--------------CEEEEEEECCCCSSSSTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEEECC--------------CEEEEECCCCCCCCHHHHHHH
T ss_conf 9999999998999999999649998767771343246-8985079--------------558752046654200001123
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH-----HHHHH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999-----99987--129936999931244347645888138999997649999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES-----LNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-----l~ll~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
..+..+|++|||+|+++. ++.+. +..++ ..++|+|++.||+|+... ......+.....+.
T Consensus 76 ~~~~~a~~~ilv~d~t~~---~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------~~~~~~~~~~~~r~---- 142 (185)
T d2atxa1 76 LSYPMTDVFLICFSVVNP---ASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD------PKTLARLNDMKEKP---- 142 (185)
T ss_dssp GGCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC------HHHHHHHTTTTCCC----
T ss_pred HCCCCCCEEEECCCCCHH---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC------HHHHHHHHHCCCCC----
T ss_conf 134421112111246357---88887889999999960788870676424433221------11234430023552----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998078213320124789831499478767989114799999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
............. +.++++.|||++|.||.++|..++..+
T Consensus 143 -v~~~~~~~~a~~~--------------~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 143 -ICVEQGQKLAKEI--------------GACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp -CCHHHHHHHHHHH--------------TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -0399999999981--------------997799945898829899999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.2e-14 Score=122.19 Aligned_cols=160 Identities=20% Similarity=0.145 Sum_probs=104.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+......+.+............. ...+.+|||+|+..|..++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~ 70 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK--------------QIKLQIWDTAGQESFRSITR 70 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE--------------EEEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEEE--------------EEEEEEECCCCCCCHHHHHH
T ss_conf 9999999993999999999629999875664110110133213016--------------88787641468632246778
Q ss_pred HCCCCCCEEEEEEECCCCCC-HHHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997-88899999987---129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..+..+|++|||+|+++... ......|..+. ..++|+||+.||+|+... +....
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~------------------ 128 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR----RDVKR------------------ 128 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSCH------------------
T ss_pred HHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH----HHHHH------------------
T ss_conf 87404678999975258488776788899999857999859999527752554----44589------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999980782133201247898314994787679891147999999999989
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l 1007 (1384)
.......... .++++.|||+||.||.+++..|+..+-..+
T Consensus 129 -~~~~~~a~~~---------------~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~ 168 (173)
T d2a5ja1 129 -EEGEAFAREH---------------GLIFMETSAKTACNVEEAFINTAKEIYRKI 168 (173)
T ss_dssp -HHHHHHHHHH---------------TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -9888789875---------------987999448999799999999999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.58 E-value=2.1e-14 Score=123.56 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98899992899997799999983963455557513752036810332100000001343457797899919998311678
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~ 873 (1384)
...|+|+|..++|||||+.+|....... .....+..+.... +....+.||||||+..+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~ 72 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT--------------YKNVKFNVWDVGGQDKIRPL 72 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCCEE-----EEEETTEEEEEEE--------------ETTEEEEEEEESCCGGGHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEEE--------------CCCEEEEEECCCCCCHHHHH
T ss_conf 4799999999987899999984488887-----4321325677750--------------35244478627986101467
Q ss_pred HHHCCCCCCEEEEEEECCCCCCHH-HHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 871036666139986146899788-899999987----129936999931244347645888138999997649999999
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
+...+..++++|+|+|++.--... ....|.... ...+|++|++||+|+...+ ..
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~------~~--------------- 131 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------KP--------------- 131 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------CH---------------
T ss_pred HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------CH---------------
T ss_conf 776512662489998415422178999999987530146665131121013561003------48---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999807821332012478983149947876798911479999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+...+ ++... ....++++++||+||+||.+++.+|...
T Consensus 132 ----~~i~~~~---~~~~~-------~~~~~~~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 132 ----HEIQEKL---GLTRI-------RDRNWYVQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp ----HHHHHHT---TGGGC-------CSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ----HHHHHHH---HHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf ----9999999---99998-------7679889980288896999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=7.4e-14 Score=119.37 Aligned_cols=184 Identities=20% Similarity=0.209 Sum_probs=100.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH-HHHH
Q ss_conf 999928999977999999839634555575137520368103321000000013434577978999199983116-7887
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-NLRS 875 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~-~~r~ 875 (1384)
|+|+|++++|||||+++|++..+.... .+++..++...+... ....+.+||||||..|. ..+.
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~---------------~~~~~~~~d~~g~~~~~~~~~~ 66 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNN---------------RGNSLTLIDLPGHESLRFQLLD 66 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSST---------------TCCEEEEEECCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC-CCEEEEEEEEEEEEE---------------EEEEEEEEECCCCCCCCCHHHH
T ss_conf 999999998989999999809987642-870278999999645---------------4354444202112343301566
Q ss_pred HCCCCCCEEEEEEECCCCCCH--HHHHHH-HHHH-----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978--889999-9987-----12993699993124434764588813899999764999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEP--QTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~--QT~E~l-~ll~-----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
..+..++.+|+|||+++.... ...+.| .++. ..++|++|++||+|++... +...+...+..........
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~---~~~~i~~~l~~e~~~~~~~ 143 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK---SAKLIQQQLEKELNTLRVT 143 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CHHHHHHHHHHHHHHHHHC
T ss_conf 6554305563477766653459999999999997688751589479999885467888---9999999999875155310
Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCEEEEECCCCCCCC------HHHHHHHHH
Q ss_conf 99999999999998078---213320124789831499478767989------114799999
Q 000626 948 FNMRLVQIVTQLKEQGM---NTELYYKNKDRGETFNIVPTSAISGEG------IPDLLLLLV 1000 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl---~~e~~~~~~~~g~~v~iVpvSA~TGeG------I~eLl~~L~ 1000 (1384)
..... ........... .....+....+...+.++++|+.+|.| +..+-.||.
T Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~ 204 (207)
T d2fh5b1 144 RSAAP-STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLA 204 (207)
T ss_dssp CC-------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHH
T ss_pred CCCCC-CEEEHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 14542-12004255666604522144577565773799966147876534322999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.57 E-value=1.1e-13 Score=118.12 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=102.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|++..+.....+.+...+... +..+. ....+.||||||+..|..++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~-~~~~~--------------~~~~l~i~d~~g~~~~~~~~~ 70 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDG--------------EEVQIDILDTAGQEDYAAIRD 70 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETT--------------EEEEEEEEECCC---CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCC--------------CCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999899588999999972999865477534310111-13454--------------332222334456531234543
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-9987----12993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..++.+|++|||+|..+.-..+....| ..+. ..++|++++.||+|+...+ .-..
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~----~v~~----------------- 129 (168)
T d1u8za_ 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR----QVSV----------------- 129 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC----CSCH-----------------
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCH-----------------
T ss_conf 1142331668985254113455589999999996188998189995364212233----5307-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998078213320124789831499478767989114799999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... .++++++||++|.||.+++..|++.+
T Consensus 130 --~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 130 --EEAKNRADQW---------------NVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp --HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf --8899999976---------------97699986899929999999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9e-14 Score=118.70 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=105.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+.....+.+........+..... ...+.+|||||++.|..++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~d~~g~~~~~~~~~ 73 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------------TVKFEIWDTAGQERYHSLAP 73 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE--------------EEEEEECCCCCCHHHHHHHH
T ss_conf 9999999994989999999859888543442022000000000214--------------78777415787311005479
Q ss_pred HCCCCCCEEEEEEECCCCCCH-HHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978-8899999987---129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.+|++|||+|..+.... +....+..+. ..++|+|++.||+|+.... ..+.
T Consensus 74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~------------------ 131 (170)
T d1r2qa_ 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR----AVDF------------------ 131 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCCH------------------
T ss_conf 986086658997325046677878887643320368984598632412432234----5617------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798911479999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+ ..+... ..++++.+||++|.||.+++..|+..
T Consensus 132 -e~~-~~~~~~--------------~~~~~~e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 132 -QEA-QSYADD--------------NSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp -HHH-HHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred -HHH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -777-778986--------------69789996489997899999999997
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.1e-14 Score=121.36 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=104.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+++|++..+.......+............. ...+.+||+||+..|...+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~~~~~~~~~~ 68 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYSAMR 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCCGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEECE---------------EEEEEEEECCCCCCCCCCH
T ss_conf 6999999799899999999980988986577410010110231010---------------0023334115753223321
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7103666613998614689978889999-9987----1299369999312443476458881389999976499999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
...++.++++|+|+|.++...-+....| ..+. ..++|+|++.||+|+... .... .
T Consensus 69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----~~~~-~-------------- 128 (166)
T d1ctqa_ 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVES-R-------------- 128 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC-----CSCH-H--------------
T ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-----CCCH-H--------------
T ss_conf 6653102333301112433507788899999998637899709999614554544-----4457-7--------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.+....... .++++.+||++|+||.+++..|+..+
T Consensus 129 ----~~~~~~~~~---------------~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 129 ----QAQDLARSY---------------GIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----HHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHH---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----889999980---------------98499985899948999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.5e-13 Score=117.02 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=102.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|....+.....+....... ..+..+.. ...+.+|||+|+..|..++.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~~~~~d~~g~~~~~~~~~ 71 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCVIDDR--------------AARLDILDTAGQEEFGAMRE 71 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEE-EEEEETTE--------------EEEEEEEECC----CCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE-EEEEECCC--------------CCCCCCCCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452000-00100121--------------21112211256532254544
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-----HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-----998712993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..+..+|++|||+|.++.-.-.....| ........|+||+.||+|+.... ....
T Consensus 72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~v~~----------------- 130 (171)
T d2erya1 72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR----QVTQ----------------- 130 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC----SSCH-----------------
T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHC----CCHH-----------------
T ss_conf 3342451689960454344314678876888763035788779998302066531----3227-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999980782133201247898314994787679891147999999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
..+....... .++++.|||++|.||.+++..|++.+.
T Consensus 131 --~~~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~ 167 (171)
T d2erya1 131 --EEGQQLARQL---------------KVTYMEASAKIRMNVDQAFHELVRVIR 167 (171)
T ss_dssp --HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --8889999982---------------987999738999399999999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.5e-14 Score=121.90 Aligned_cols=170 Identities=14% Similarity=0.197 Sum_probs=105.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98899992899997799999983963455557513752036810332100000001343457797899919998311678
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~ 873 (1384)
...|+|+|..++|||||+.+|+...+.....+++............. ...+.||||||++.|..+
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~~~ 67 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQEDYDRL 67 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCC---------------EEEEECCCCCCCHHHHHH
T ss_conf 56999999999699999999971999987588310210025750794---------------246502444420323244
Q ss_pred HHHCCCCCCEEEEEEECCCCCCHHHH-HHH-HHHH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87103666613998614689978889-999-9987--1299369999312443476458881389999976499999999
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~ll~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
+..++..+|++|||+|+++.-.-+.. ..| ..+. ..++|++++.||+|+... ......+.......
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~------~~~~~~~~~~~~~~----- 136 (191)
T d2ngra_ 68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD------PSTIEKLAKNKQKP----- 136 (191)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC------HHHHHHHHTTTCCC-----
T ss_pred HHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC------CHHHHHHHHCCCCC-----
T ss_conf 5422320102311411451889999999999987521799736877405444432------00466654301244-----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
............. ..++++.|||++|.||.+++..++..+
T Consensus 137 v~~~~~~~~~~~~--------------~~~~~~e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 137 ITPETAEKLARDL--------------KAVKYVECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp CCHHHHHHHHHHT--------------TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC--------------CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3399999999972--------------998699983888969999999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.8e-14 Score=120.80 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=103.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+|++..+.....+++...+. ..+..+.. ...+.||||+|...|..++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~l~i~d~~g~~~~~~~~ 69 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQ--------------EYHLQLVDTAGQDEYSIFP 69 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTE--------------EEEEEEEECCCCCTTCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCC-EEEECCCE--------------EEEEEECCCCCCCCCCCCC
T ss_conf 38999998992989999999719888544754211310-38831767--------------9876301124642222343
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHH-----HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7103666613998614689978889999-----99871299369999312443476458881389999976499999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
...+..+|++|||+|+++.-.-+....| +.+...++|++++.||+|+...+ .-+..
T Consensus 70 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r----~v~~~--------------- 130 (167)
T d1xtqa1 70 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----VISYE--------------- 130 (167)
T ss_dssp GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGC----CSCHH---------------
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC----CHHHH---------------
T ss_conf 21223222110010221023345555310122100013454404505333533222----11589---------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
.+....... .++++.+||++|.||.+++..|+..+
T Consensus 131 ----~~~~~a~~~---------------~~~~~e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 131 ----EGKALAESW---------------NAAFLESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp ----HHHHHHHHH---------------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----999999983---------------98899983699979999999999983
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.8e-14 Score=122.57 Aligned_cols=145 Identities=22% Similarity=0.206 Sum_probs=96.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH--
Q ss_conf 8999928999977999999839634-5555751375203681033210000000134345779789991999831167--
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~-- 872 (1384)
.|+|+|++++|||||+++|++.++. .....|++.......+... ...+.++||||......
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID----------------GMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET----------------TEEEEEEECCCCSCCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECC----------------CCEEEECCCCCCCCCCCCC
T ss_conf 999989999989999999968886675124664220476532026----------------8235413653212246520
Q ss_pred ------HHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ------88710366661399861468997888999999871---299369999312443476458881389999976499
Q 000626 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~---~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
....++..+|++|+++|+...........|..... .++|+|+|+||+|+... ...
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~-----~~~----------- 130 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE-----TLG----------- 130 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC-----CCE-----------
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH-----HHH-----------
T ss_conf 2478999999987413320110256542034555444555420141010204654443355-----887-----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999999980782133201247898314994787679891147999999
Q 000626 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 944 i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
+. . -...+++++||++|.||.+|+.+|..
T Consensus 131 --------------------~~-~--------~~~~~~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 131 --------------------MS-E--------VNGHALIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp --------------------EE-E--------ETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred --------------------HH-H--------HCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf --------------------98-7--------27996799978889899999999981
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=9.9e-14 Score=118.38 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=106.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89988999928999977999999839634555575137520368103321000000013434577978999199983116
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1384)
+|...|+|+|..++|||||+.+|+...+.....+.+........ .... ....+.+||++|+..|.
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~-~~~~--------------~~~~~~~~d~~g~~~~~ 65 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDC--------------QQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEE-ESSS--------------CEEEEEEEEECSSCSST
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEE-EEEE--------------EEEEECCCCCCCCCCCC
T ss_conf 95659999998998999999999709898755875021110368-8622--------------68874000246752234
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7887103666613998614689978889999-9987----1299369999312443476458881389999976499999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ 946 (1384)
.++..++..+|++|||+|+++....+....| ..+. ..++|+||+.||+|+...- ....
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~~~~------------- 128 (167)
T d1c1ya_ 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER----VVGK------------- 128 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC----CSCH-------------
T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC----CCCH-------------
T ss_conf 45431122355358852104346667679999999885178897099999843755431----4652-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999999998078213320124789831499478767989114799999999
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
... ..+... ...++++.|||++|.||.+++.+|+..+
T Consensus 129 ------~~~-~~~~~~-------------~~~~~~~e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 129 ------EQG-QNLARQ-------------WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp ------HHH-HHHHHH-------------TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHH-------------HCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------578-999998-------------4897799973899919899999999970
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=5.7e-14 Score=120.25 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|++..+.....+.+........+.... ....+.+|||||+..+..++.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 69 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD--------------RLVTMQIWDTAGQERFQSLGV 69 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS--------------CEEEEEEEEECSSGGGSCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC--------------CEEEEEEEECCCCCCCCCCCC
T ss_conf 999999999198999999971989887388434123100133089--------------347777640378641112112
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HHHH-------HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-9987-------12993699993124434764588813899999764999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~-------~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
..+..+|++|+|+|.++.........| ..+. ..++|+|+++||+|+... ....
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-----~~~~-------------- 130 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-----QVAT-------------- 130 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----CSCH--------------
T ss_pred CCCCCCCEEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC-----CHHH--------------
T ss_conf 224675589983025411332100256789998733233567778999875033312-----0148--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999807821332012478983149947876798911479999999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
......+... ..++++.|||++|.||.+++.+|+..+-.
T Consensus 131 -----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 131 -----KRAQAWCYSK--------------NNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp -----HHHHHHHHHT--------------TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -----9999999986--------------59769997489896999999999999985
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-13 Score=115.70 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+.....+.+.. .+.....+. .....+.+|||+|...|..++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~----~~~~~~~~~-----------~~~~~l~~~d~~g~~~~~~~~~ 68 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED----TYRQVISCD-----------KSICTLQITDTTGSHQFPAMQR 68 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE----EEEEEEEET-----------TEEEEEEEEECCSCSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE----CCCCCEEEC-----------CCCCEECCCCCCCCCCCCCCCC
T ss_conf 8999998997989999999709998763761331----011210002-----------2000001112356521110124
Q ss_pred HCCCCCCEEEEEEECCCCCCHHH-HHHHHHH---H--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888-9999998---7--1299369999312443476458881389999976499999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQT-IESLNLL---K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT-~E~l~ll---~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
..+..+|++|||+|+++.-.... ...+..+ . ..++|+|++.||+|+..... ...
T Consensus 69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----v~~---------------- 128 (171)
T d2erxa1 69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQS---------------- 128 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCH----------------
T ss_pred CCCCCEEEEEEEEECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC----CCH----------------
T ss_conf 343320389997202221100102102343333404678986899960665322345----548----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... .++++.|||++|.||.+++..|+.++
T Consensus 129 ---~e~~~~~~~~---------------~~~~~e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 129 ---SEAEALARTW---------------KCAFMETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ---HHHHHHHHHH---------------TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---9999999984---------------98699983899939999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.3e-14 Score=122.07 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=105.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|+...+.....+.+.............. ...+.+|||+|+..|..++.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~d~~g~~~~~~~~~ 70 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK--------------RVNLAIWDTAGQERFHALGP 70 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC--------------EEEEEEEECCCC-------C
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCC--------------CCEEEEECCCCCCEECCCCH
T ss_conf 9999999993989999999829988644542001000011013785--------------31254402688604510350
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHH----HHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888999----99987129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIES----LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~----l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-.-+.... +........|+|++.||+|+... +.-+.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~----~~v~~------------------ 128 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE----RHVSI------------------ 128 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG----CCSCH------------------
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC----CCCCH------------------
T ss_conf 00038966699980995567775543322001111233212452321020101----23225------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078213320124789831499478767989114799999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... .++++.|||++|.||.+++..|+..+
T Consensus 129 -~e~~~~a~~~---------------~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 129 -QEAESYAESV---------------GAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp -HHHHHHHHHT---------------TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -8999999985---------------98399970699969899999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.9e-14 Score=122.46 Aligned_cols=170 Identities=17% Similarity=0.219 Sum_probs=104.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
|...|+|+|..++|||||+.+|+...+.....+++......... ... ....+.|||++|+..|..
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~-~~~--------------~~~~~~~~d~~g~~~~~~ 68 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDG--------------KPVNLGLWDTAGQEDYDR 68 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEE-ETT--------------EEEEEEEECCCCSGGGTT
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECEEEEEE-CCC--------------CCEEEEEECCCCCCCCHH
T ss_conf 06999999999979999999997498985446631100011000-368--------------634898603543001001
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCHHHHH--HHHHHH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8871036666139986146899788899--999987--129936999931244347645888138999997649999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
++...++.+|++|||+|+++...-+... ++..+. ..++|+||+.||+|+... ......+......
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~~----- 137 (183)
T d1mh1a_ 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD------KDTIEKLKEKKLT----- 137 (183)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC------HHHHHHHHHTTCC-----
T ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHHHHHHHHCCCC-----
T ss_conf 02212344551445203534788998999999999973899868998402222121------0015665111356-----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999807821332012478983149947876798911479999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
.............. ..+++|.|||++|.||.++|..|+..
T Consensus 138 ~~~~~~~~~~a~~~--------------~~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 138 PITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp CCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC--------------CCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 30368999999981--------------99669992888881999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.4e-14 Score=124.84 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|+...+.....+++...+....+..+. ....+.||||||+..|..++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~ 70 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIKFNVWDTAGQEKFGGLRD 70 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTT--------------CCEEEEEEECTTHHHHSSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCEECC
T ss_conf 999999999088999999984988854465300110001122223--------------332221112346533000020
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHH-HHHHHHH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889-9999987--1299369999312443476458881389999976499999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 952 (1384)
..++.+|++|||+|+++.-.-+.. ..+..+. ..++|+|++.||+|+... .....
T Consensus 71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-~~~~~---------------------- 127 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR-KVKAK---------------------- 127 (170)
T ss_dssp GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS-CCTTT----------------------
T ss_pred HHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH-HHHHH----------------------
T ss_conf 0113321100011322110100267778887640479723534465545551-33368----------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999998078213320124789831499478767989114799999999
Q 000626 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
...... ...++++.+||++|.||.+++.+|+..+
T Consensus 128 --~~~~~~---------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 128 --SIVFHR---------------KKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp --SHHHHS---------------SCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred --HHHHHH---------------HCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --889998---------------7598799996898979999999999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.4e-14 Score=119.86 Aligned_cols=158 Identities=20% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89988999928999977999999839634555575137520368103321000000013434577978999199983116
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1384)
+|...|+|+|..++|||||+.+|++..+.....+.+..... .....+.. ...+.+|||+|+..|.
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~l~~~d~~g~~~~~ 65 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVDSS--------------PSVLEILDTAGTEQFA 65 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTE--------------EEEEEEEECCCTTCCH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEECCCC--------------EEEECCCCCCCCCCCC
T ss_conf 95659999998993999999999719998766886113553-35404761--------------5762134577751234
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHH-HHHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 788710366661399861468997888999-9998----71299369999312443476458881389999976499999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ 946 (1384)
.++...++.+|++|||+|+++...-..... +..+ ...++|+||+.||+|+... +.....
T Consensus 66 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~----~~~~~~------------ 129 (167)
T d1kaoa_ 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE----REVSSS------------ 129 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG----CCSCHH------------
T ss_pred CCHHHHHHCCCCEEEEEEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHC----CCCHHH------------
T ss_conf 4427776153511566421356665400000466655304899988999972250320----232699------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999807821332012478983149947876798911479999999
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
......... .+++++|||++|.||.+++..|+..
T Consensus 130 -------~~~~~~~~~---------------~~~~~e~Sak~g~~i~e~f~~i~~~ 163 (167)
T d1kaoa_ 130 -------EGRALAEEW---------------GCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp -------HHHHHHHHH---------------TSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -------999999974---------------9859998889995899999999998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=2.4e-13 Score=115.45 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=104.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+|++..+.....+++...+....+..... ...+.||||+|++.|..++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~--------------~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH--------------TVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCC--------------CCCCCCCCCCCCHHHHHHH
T ss_conf 99999999991989999999729998654653010120232211112--------------3223455568716678888
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7103666613998614689978889999-998---712993699993124434764588813899999764999999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
...+..+|++|||+|..+...-.....| ..+ .....|++++.||+|+........- ..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v-~~----------------- 131 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKV-AR----------------- 131 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS-CH-----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH-HH-----------------
T ss_conf 888734650799980784443034552021101333333202321002341011001354-69-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999999999980782133201247898314994787679891147999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
..+....... .++++.+||++|.||.++|..|+.
T Consensus 132 --~~~~~~~~~~---------------~~~~~e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 132 --EEGEKLAEEK---------------GLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp --HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHT
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf --9999999986---------------998999348999589999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=2.6e-13 Score=115.21 Aligned_cols=157 Identities=17% Similarity=0.097 Sum_probs=102.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+++|..++|||||+.+|.+..+.....+.+..... ..+..+. ....+.+|||+|+..|..++
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~i~d~~g~~~~~~~~ 69 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDN--------------QWAILDVLDTAGQEEFSAMR 69 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE-EEEEETT--------------EEEEEEEEECCSCGGGCSSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC-CCCCCCC--------------CCCCCCCCCCCCCCCCCCCH
T ss_conf 79999998995989999999709888545763120101-1112355--------------32201220124642322112
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHH-H----HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 710366661399861468997888999-9----99871299369999312443476458881389999976499999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-L----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l----~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
...++.+|++|||+|+++.-.-..... + +.....++|+|++.||+|+.... .-..
T Consensus 70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~----~v~~---------------- 129 (169)
T d1x1ra1 70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR----KVTR---------------- 129 (169)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC----CSCH----------------
T ss_pred HHHHHHCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHC----EEEH----------------
T ss_conf 44530033899832101002343220246778763145676389984365466623----0003----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 99999999999807821332012478983149947876798-91147999999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGe-GI~eLl~~L~~l~~ 1004 (1384)
..+....... .++++.+||++|. ||.+++..|+..+.
T Consensus 130 ---e~~~~~~~~~---------------~~~~~e~Sak~~~~nV~~~F~~l~~~i~ 167 (169)
T d1x1ra1 130 ---DQGKEMATKY---------------NIPYIETSAKDPPLNVDKTFHDLVRVIR 167 (169)
T ss_dssp ---HHHHHHHHHH---------------TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf ---1677899975---------------9879999079888399999999999997
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.3e-13 Score=114.40 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=99.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC--CCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCC--
Q ss_conf 68998899992899997799999983963455--55751375203681033210000000134345779789991999--
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG--EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-- 866 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g--eagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPG-- 866 (1384)
.-+.|.|+|+|++|+|||||+++|++...... ..++.+........... ..+...++++
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 75 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-----------------KRLVDLPGYGYA 75 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-----------------EEEEECCCCC--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCEECCCC-----------------CCEEEEECCCCC
T ss_conf 766978999889999899999998589854754566650231110111465-----------------420342001221
Q ss_pred ---------CCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf ---------83116788710366661399861468997888999999871299369999312443476458881389999
Q 000626 867 ---------HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 867 ---------He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l 937 (1384)
+..+..........++.++++.++..+...+....+..+.....++++++||+|++. .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~------~~~~~--- 146 (188)
T d1puia_ 76 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA------SGARK--- 146 (188)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------HHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCC------HHHHH---
T ss_conf 102445444445556556542003589984012233126777888876403322201113331158------88899---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 976499999999999999999998078213320124789831499478767989114799999999
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+..+...+.. ++..+++|+|||++|.||++|+..|..|+
T Consensus 147 ------------~~~~~~~~~l~~-------------~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 147 ------------AQLNMVREAVLA-------------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ------------HHHHHHHHHHGG-------------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHH-------------HCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ------------999999999986-------------08998189996799988999999999970
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=2.7e-13 Score=114.99 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=104.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-----CCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 9889999289999779999998396345555-----75137520368103321000000013434577978999199983
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-----gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe 868 (1384)
+..|+|+|.+|+|||||+|+|++........ .+.|++...+..+ ..+.+.||||||..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-----------------~~~~~~l~DtPG~~ 118 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-----------------NIPNVVFWDLPGIG 118 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-----------------SCTTEEEEECCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC-----------------CCCEEEEEECCCCC
T ss_conf 7179998999997899999995888677756789998870445531106-----------------89707998379854
Q ss_pred CHH-----HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCCHHHHHHHHH
Q ss_conf 116-----78871036666139986146899788899999987129936999931244347---6458881389999976
Q 000626 869 SFT-----NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG---WKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 869 ~F~-----~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~---w~~~~~a~~~~~l~~q 940 (1384)
... .+....+..+|++|+|+| ..+..+....+..+...+.|+++|+||+|+... |......+....+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~-- 194 (400)
T d1tq4a_ 119 STNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ-- 194 (400)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHH--
T ss_conf 33344999998743322659999658--88878899999999976998799970863210135432201122788999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 499999999999999999998078213320124789831499478767--98911479999999999
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~T--GeGI~eLl~~L~~l~~~ 1005 (1384)
.....+...+...|+. ..+++++|+.. ..|++.|...+...++.
T Consensus 195 ---------~ir~~~~~~l~~~~~~------------~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 195 ---------DIRLNCVNTFRENGIA------------EPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp ---------HHHHHHHHHHHHTTCS------------SCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred ---------HHHHHHHHHHHHCCCC------------CCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---------9999999999874899------------897797337764515899999999998399
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.6e-13 Score=112.59 Aligned_cols=155 Identities=20% Similarity=0.170 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+.....+++...+........ ....+.||||||+..|. .+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~---------------~~~~l~i~D~~g~~~~~-~~~ 67 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD---------------EVVSMEILDTAGQEDTI-QRE 67 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETT---------------EEEEEEEEECCCCCCCH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC---------------CCEEEEEEECCCCCCCC-CCH
T ss_conf 99999989978999999997398987637731001112112466---------------32178885111222234-431
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HH----HHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-99----8712993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l----l~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
..++.+|++|||+|+++.........| .+ ....++|+|++.||+|+.... .-+.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r----~V~~----------------- 126 (168)
T d2atva1 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR----QVST----------------- 126 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC----CSCH-----------------
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHC----CCCH-----------------
T ss_conf 5433641000102568865324455400112111134675226651410255532----5769-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 99999999998078213320124789831499478767989-1147999999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeG-I~eLl~~L~~l~~ 1004 (1384)
..+....... .++++.+||+||.| |.+++..|+..+.
T Consensus 127 --~e~~~~a~~~---------------~~~~~e~Saktg~gnV~e~F~~l~~~i~ 164 (168)
T d2atva1 127 --EEGEKLATEL---------------ACAFYECSACTGEGNITEIFYELCREVR 164 (168)
T ss_dssp --HHHHHHHHHH---------------TSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH---------------CCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf --9999999980---------------9959997554188199999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=8.6e-14 Score=118.84 Aligned_cols=156 Identities=24% Similarity=0.295 Sum_probs=98.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE--EEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 9988999928999977999999839634555575137--52036810332100000001343457797899919998311
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F 870 (1384)
-+++|+|+|++++|||||+++|++.++......+.|. .+...... ....+.++|+||...+
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 66 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-----------------GAYQAIYVDTPGLHME 66 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-----------------TTEEEEEESSSSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEEC-----------------CCCEEEEECCCCCEEC
T ss_conf 36199999799998999999995898634326887137888755505-----------------8731476048873011
Q ss_pred HHH---------HHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 678---------87103666613998614689978889999998712993699993124434764588813899999764
Q 000626 871 TNL---------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 871 ~~~---------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
... .......++++++++|+. +...+....+..+.....|+|+++||+|.+.+ ..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~-----~~~--------- 131 (179)
T d1egaa1 67 EKRAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKVDNVQE-----KAD--------- 131 (179)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-----HHH---------
T ss_pred CHHHHHHHHHHCCCCCHHHCCEEEEEEECC-CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCH-----HHH---------
T ss_conf 023444443210221021144467987457-66226789987754135751555543441210-----245---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999998078213320124789831499478767989114799999999
Q 000626 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 942 ~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
+......+... ....+++++||++|.||.+|+..|..++
T Consensus 132 ----------~~~~~~~~~~~-------------~~~~~~~~vSA~~g~gi~~L~~~i~~~l 170 (179)
T d1egaa1 132 ----------LLPHLQFLASQ-------------MNFLDIVPISAETGLNVDTIAAIVRKHL 170 (179)
T ss_dssp ----------HHHHHHHHHTT-------------SCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHH-------------CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ----------66676666642-------------3899789982768989999999999748
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=3.1e-14 Score=122.30 Aligned_cols=99 Identities=38% Similarity=0.612 Sum_probs=93.7
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCE-ECEEEECHHHHCCCCCC
Q ss_conf 45550179999998185048999999206527988987167896067765303898883110-01022100101012460
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGI 1092 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~r-vk~~~~~~k~V~aa~gv 1092 (1384)
..+.+++|+|++..+|+|++++++|++|+|+.||.|++++..|++.++||+||.|+||.++| ....|.+++++.+++|+
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHHCCCCCCEECCEEECCCCE
T ss_conf 98737999999973799806999997687835999999067477998744034885245642003688097698079865
Q ss_pred EEECCCCCCCCCCCCEEEEC
Q ss_conf 55015653235799449929
Q 000626 1093 KITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1093 ki~~~gL~~a~aG~~l~v~~ 1112 (1384)
+|.++||+.++||++|+|++
T Consensus 82 kI~a~gLe~v~aG~~~~VV~ 101 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLRVVT 101 (101)
T ss_dssp EEECSSCTTBCTTCEEEECS
T ss_pred EEECCCCCCCCCCCEEEEEC
T ss_conf 99819987678998889869
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.7e-13 Score=113.20 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=101.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99992899997799999983963455557513752036810332100000001343457797899919998311678871
Q 000626 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~r 876 (1384)
|+|+|..++|||||+++|.+..+......++........+..... ...+.+|||+|...+...+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~~ 74 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH--------------FVTMQIWDTAGQERFRSLRTP 74 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE--------------EEEEEEEECCCCGGGHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCC--------------EEEEEEECCCCCCEEHHHHHH
T ss_conf 999999997999999999849788765663232144455542584--------------015765203686000345566
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHH-HHHH-------HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03666613998614689978889999-9987-------129936999931244347645888138999997649999999
Q 000626 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~-------~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
.+..+|++|+|+|.++...-+....| ..+. ..++|+|+|.||+|+.. ..-+.
T Consensus 75 ~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-----~~v~~--------------- 134 (174)
T d1wmsa_ 75 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-----RQVST--------------- 134 (174)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-----CSSCH---------------
T ss_pred HHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----CCCCH---------------
T ss_conf 6506615789986402466422466899999985102577720999413240543-----22769---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998078213320124789831499478767989114799999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+....... ..+++++|||++|.||.+++..|+..+
T Consensus 135 ----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 135 ----EEAQAWCRDN--------------GDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp ----HHHHHHHHHT--------------TCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----9999999974--------------997599976899949999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.50 E-value=6.7e-13 Score=111.99 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=100.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|.+++|||||+++|.+..+........+ ....+ ......+.++|++|+..+....
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~d~~~~~~~~~~~ 76 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS---NVEEI----------------VINNTRFLMWDIGGQESLRSSW 76 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCS---SCEEE----------------EETTEEEEEEECCC----CGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE---EEEEE----------------EECCEEEEEECCCCCCCCCCCH
T ss_conf 7999999999898999999966888730243333---57998----------------4053699995155310122111
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHH-HHH----HHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 710366661399861468997888999-999----871299369999312443476458881389999976499999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~l----l~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 949 (1384)
...+..++.+++|+|.++......... +.. ....++|++|++||+|+... ...
T Consensus 77 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~--------------- 134 (177)
T d1zj6a1 77 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC-------MTV--------------- 134 (177)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-------CCH---------------
T ss_pred HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-------CCH---------------
T ss_conf 1332154156652144564214554200134432035553379999970563121-------769---------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999998078213320124789831499478767989114799999999
Q 000626 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
..+...+..... ....++++++||+||+||.+++.+|...+
T Consensus 135 ---~~i~~~~~~~~~----------~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 135 ---AEISQFLKLTSI----------KDHQWHIQACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp ---HHHHHHHTGGGC----------CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH----------HHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ---999999999766----------74698899996988979999999999973
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.1e-12 Score=108.13 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=93.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.++++..+.......... +. ..+..+. ....|.||||+|+..+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~-~~-~~i~v~~--------------~~~~l~i~Dt~g~~~~~--- 66 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YK-KEMLVDG--------------QTHLVLIREEAGAPDAK--- 66 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEE-EE-EEEEETT--------------EEEEEEEEECSSCCCHH---
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEE-EE-EEEECCC--------------EEEEEEEEECCCCCCCC---
T ss_conf 79999998997899999999719787767755404-77-8740485--------------68999985045321001---
Q ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHH-HH---HH---HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7103666613998614689978889999-99---87---12993699993124434764588813899999764999999
Q 000626 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NL---LK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l---l~---~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
.++.+|++|||+|+++.-.-+....| .. ++ ..++|+++++||.|+.... ...+.
T Consensus 67 --~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~----~~~v~------------- 127 (175)
T d2bmja1 67 --FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS----PRVVG------------- 127 (175)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS----CCCSC-------------
T ss_pred --CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH----HCCHH-------------
T ss_conf --35566536888610121124415788888999864036786178875304740443----02105-------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999807821332012478983149947876798911479999999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~ 1005 (1384)
. ..+....... ..++++.|||++|.||.+++..|+..+..
T Consensus 128 -~---~~~~~~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 128 -D---ARARALCADM--------------KRCSYYETCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp -H---HHHHHHHHTS--------------TTEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -9---9999999981--------------99749990789996999999999999998
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=4.3e-13 Score=113.47 Aligned_cols=168 Identities=16% Similarity=0.183 Sum_probs=103.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|+...+.....+.+.......+ .... ....+.||||+|++.|..++.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~-~~~~--------------~~~~~~i~D~~g~~~~~~~~~ 68 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDT--------------QRIELSLWDTSGSPYYDNVRP 68 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEE-ECSS--------------CEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCC-CCCC--------------EEEEECCCCCCCCCCCCCCCC
T ss_conf 9999999995989999999729999865872010112210-2564--------------477621333221111233554
Q ss_pred HCCCCCCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10366661399861468997888-999999-87--129936999931244347645888138999997649999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQT-IESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT-~E~l~l-l~--~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
..++.+|++|||+|+++...-+. ...|.. +. ..++|+|++.||+|+...+ .....+....... ..
T Consensus 69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~------~~~~~~~~~~~~~-----V~ 137 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV------STLVELSNHRQTP-----VS 137 (179)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH------HHHHHHHTTTCCC-----CC
T ss_pred CHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------HHHHHHHHHHCCC-----CH
T ss_conf 100012344302303467779999887888874048851699987403443342------1467776654175-----61
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999999807821332012478983149947876798-9114799999999
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGe-GI~eLl~~L~~l~ 1003 (1384)
........... +.++++.|||++|. ||.+++..+...+
T Consensus 138 ~~e~~~~a~~~--------------~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 138 YDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHHHHHHH--------------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------CCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999999983--------------9975999707989849999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.47 E-value=3.2e-13 Score=114.42 Aligned_cols=152 Identities=22% Similarity=0.205 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+++|.+..+..... +......... .....+.+||+||...+...+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~---~~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCC---CSSCCEEEEE----------------CSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC---CEEEEEEEEE----------------EEEEEEEEECCCCCCCCHHHHH
T ss_conf 89999999989899999996598886221---1146799973----------------0169998862788400015666
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHH-HHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889-999998----712993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
+....++++|+|+|..+-...+.. ..+..+ ....+|++++.||+|+...+ ...
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~------~~~---------------- 120 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------NAA---------------- 120 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------CHH----------------
T ss_pred HHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC------CHH----------------
T ss_conf 6420532689998742737777777777888776404575499975102443444------289----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999999999980782133201247898314994787679891147999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
.+. ...+.... ....++++++||+||+||.+++++|..
T Consensus 121 ---~i~---~~~~~~~~-------~~~~~~~~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 121 ---EIT---DKLGLHSL-------RHRNWYIQATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp ---HHH---HHTTGGGC-------SSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred ---HHH---HHHHHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf ---999---99999988-------637988999679889798999999995
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.45 E-value=4.6e-12 Score=105.53 Aligned_cols=157 Identities=22% Similarity=0.167 Sum_probs=104.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98899992899997799999983963455557513752036810332100000001343457797899919998311678
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~ 873 (1384)
...|+|+|.+++|||||+++|.+..+.... .|............ ..+.++|+||+..+...
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~---~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 65 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKN----------------LKFQVWDLGGLTSIRPY 65 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCC---CCSSEEEEEEEETT----------------EEEEEEEECCCGGGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCEEEEEECCCC----------------EEEEEEECCCCCCCCCC
T ss_conf 329999999998999999999679876034---13213565403686----------------68887504541112220
Q ss_pred HHHCCCCCCEEEEEEECCCCCCHHHHHHH-HH-H---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87103666613998614689978889999-99-8---7129936999931244347645888138999997649999999
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NL-L---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l-l---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
....+..++++++++|+...........+ .. + .....|+++++||+|+... ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~------~~~--------------- 124 (169)
T d1upta_ 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA------MTS--------------- 124 (169)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC------CCH---------------
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCC------CCH---------------
T ss_conf 01232101332113444301000100001146666530355417999860554110------117---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999980782133201247898314994787679891147999999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
..+...+...-. ....++++++||++|+||.+++.+|+..+.
T Consensus 125 ----~~i~~~~~~~~~----------~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 125 ----SEMANSLGLPAL----------KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp ----HHHHHHHTGGGC----------TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH----------HCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ----899999877887----------638988999758889798999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=9.5e-13 Score=110.82 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+++|++..+... +..++.+..... +....+.++||+|+..|.....
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 62 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELA--------------IGNIKFTTFDLGGHIQARRLWK 62 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEC--------------CTTCCEEEEECCCSGGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEE-----ECEEEEEEEEEC--------------CCCEEEEEEEECCCHHHHHHHH
T ss_conf 899999999999999999958998715-----024627689950--------------5875678874032113466676
Q ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHH-HH----HHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103666613998614689978889999-99----8712993699993124434764588813899999764999999999
Q 000626 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l----l~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
.....++.+++++|..+-........+ .. ....+.|+++++||+|+.... .
T Consensus 63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------~------------------ 118 (166)
T d2qtvb1 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------S------------------ 118 (166)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------C------------------
T ss_pred HHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC------C------------------
T ss_conf 5400004642300033402103456787763200103785499984133641237------8------------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999999999980782133201247898314994787679891147999999
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~ 1001 (1384)
...+...+......... + ......++++++||+||+||.++|.+|.+
T Consensus 119 -~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 119 -EAELRSALGLLNTTGSQ-R--IEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp -HHHHHHHHTCSSCCC------CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHH-H--HCCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf -99999986332346888-6--42447978999337889899999999848
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.45 E-value=1.2e-13 Score=117.70 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=76.8
Q ss_pred HCCCEECCEEEEECCCCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 40520003046661562016-899958989996306730997760-5991321257710112364323333798089998
Q 000626 1247 AADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKI 1324 (1384)
Q Consensus 1247 ~~~~av~p~~l~i~~~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i 1324 (1384)
.+|.| .|+. +|. ++...||||+|++|.|++++.++| |++.+||.|.|.||+|++++|.++++|+||||.|
T Consensus 5 ~~G~A------~V~~--vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l 76 (99)
T d1d1na_ 5 VIGQA------EVRQ--TFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTI 76 (99)
T ss_dssp EEEEE------EECC--CCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEEC
T ss_pred EEEEE------EEEE--EEECCCCCEEEEEEEEECEECCCCCEEEECCCEEEEEEEEEEECCCCCCCCEECCCEEEEEEE
T ss_conf 99999------9989--999489937989999818480588427823987999858865014331048855782888996
Q ss_pred ECCCCHHHHCCCCCCCCCCCEEEEECCH
Q ss_conf 3499600000115324679959994434
Q 000626 1325 AGSNSEEQQKMFGRHFDIEDELVSHISR 1352 (1384)
Q Consensus 1325 ~~~~~~~~~~~~gr~f~~~d~l~s~i~~ 1352 (1384)
.+|+ .|.+||+|.|+...
T Consensus 77 ~~~~----------d~~~GD~ie~y~~~ 94 (99)
T d1d1na_ 77 KNFN----------DIKEGDVIEAYVMQ 94 (99)
T ss_dssp TTCS----------SCSSCSEEEEECCS
T ss_pred CCCC----------CCCCCCEEEEEEEE
T ss_conf 4856----------78889999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.4e-12 Score=109.56 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=92.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECC---CCCCHH
Q ss_conf 89999289999779999998396345555-75137520368103321000000013434577978999199---983116
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP---GHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTP---GHe~F~ 871 (1384)
.|+|+|..++|||||+.+|++........ ..+........+..+. ....+.+||+| |++.|
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~~g~e~~- 69 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG--------------ESATIILLDMWENKGENEW- 69 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT--------------EEEEEEEECCTTTTHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCC--------------CEEEEEEECCCCCCCCCCC-
T ss_conf 9999998992999999999728677566566255310000000488--------------5155556214431222212-
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7887103666613998614689978889999-99871----299369999312443476458881389999976499999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~----~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ 946 (1384)
++...++.+|++|||+|+++.........| ..+.. .++|+||+.||+|+... +...+.
T Consensus 70 -~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~v~~~------------ 132 (172)
T d2g3ya1 70 -LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC----REVSVS------------ 132 (172)
T ss_dssp -HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG----CCSCHH------------
T ss_pred -CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC----CCCCHH------------
T ss_conf -233333344203343112200012212355555430024677129998404453333----454277------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999980782133201247898314994787679891147999999999
Q 000626 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~ 1004 (1384)
......... .++++.|||++|.||.+++..|+..+.
T Consensus 133 -------~~~~~a~~~---------------~~~~~e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 133 -------EGRACAVVF---------------DCKFIETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp -------HHHHHHHHH---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -------889999876---------------985999828999699999999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=7.3e-12 Score=104.02 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=94.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH-
Q ss_conf 8899992899997799999983963455557513752036810332100000001343457797899919998311678-
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~- 873 (1384)
..|+|+|..++|||||+.+|....+.......++............ ....+.+||++|+..+...
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 68 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG--------------ERIKIQLWDTAGQERFRKSM 68 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT--------------EEEEEEEEECCCSHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC--------------CCEEEEEEECCCCHHHCCCC
T ss_conf 9999999999298999999973999886476424220013445640--------------22179998505731103212
Q ss_pred HHHCCCCCCEEEEEEECCCCCCHHHHH-HHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 871036666139986146899788899-999987----129936999931244347645888138999997649999999
Q 000626 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
+...+..+|++|||+|+++.-.-.... .+..+. ..++|++|+.||+|+.... .-+.
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~----~v~~--------------- 129 (165)
T d1z06a1 69 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI----QVPT--------------- 129 (165)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC----CSCH---------------
T ss_pred CEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCC----CHHH---------------
T ss_conf 103642788249999852356666554212787763258997199992135500101----2169---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC---CCHHHHHHHH
Q ss_conf 99999999999980782133201247898314994787679---8911479999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG---EGIPDLLLLL 999 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TG---eGI~eLl~~L 999 (1384)
..+....... .++++.+||+|| +||.+++..|
T Consensus 130 ----~~~~~~~~~~---------------~~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 130 ----DLAQKFADTH---------------SMPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp ----HHHHHHHHHT---------------TCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred ----HHHHHHHHHC---------------CCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf ----9999999987---------------9989998034297380799999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.35 E-value=3.9e-12 Score=106.14 Aligned_cols=166 Identities=15% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
+...|+|+|..++|||||+++|++..+.... .|.......+.+. ...+.++|++|+..+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 72 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIA----------------GMTFTTFDLGGHIQARR 72 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEET----------------TEEEEEEEECC----CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCCCEEEEEEC----------------CCCCCCCCCCCHHHHHH
T ss_conf 7778999999998989999999678875224---0233432589743----------------62112234440045656
Q ss_pred HHHHCCCCCCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88710366661399861468997-88899999987----12993699993124434764588813899999764999999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~e 947 (1384)
.+......++++++|+|+.+... .+....+..+. ..++|+++++||+|+... .+.
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~------~~~-------------- 132 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA------ISE-------------- 132 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC------CCH--------------
T ss_conf 776540232201124531574203778999987510123578746998732475121------889--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999980782133201--2478983149947876798911479999999
Q 000626 948 FNMRLVQIVTQLKEQGMNTELYYK--NKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~--~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
..+...+............ .......+++++|||+||+||.+++.||.++
T Consensus 133 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 133 -----ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp -----HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred -----HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -----9999997204421333234677751378779998588898999999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=9.9e-11 Score=95.29 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=106.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88999928999977999999839634555575137520368103321000000013434577978999199983116788
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r 874 (1384)
..|+|||..++||||||.+|+...+.. ...+|..+.... +....+.+|||+|+..|...+
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~~------~pTiG~~~~~~~--------------~~~~~~~~~d~~g~~~~~~~~ 62 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGSG------VPTTGIIEYPFD--------------LQSVIFRMVDVGGQRSERRKW 62 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSSC------CCCCSCEEEEEE--------------CSSCEEEEEECCCSTTGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC------CCEEEEEEEEEE--------------CCCEEEEECCCCCCCCCCCCC
T ss_conf 599999999998899999996799999------816627999984--------------020144420346642113433
Q ss_pred HHCCCCCCEEEEEEECCCCCC-----------HHHHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 710366661399861468997-----------88899999987----129936999931244347645888138999997
Q 000626 875 SRGSGLCDIAILVVDIMHGLE-----------PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~-----------~QT~E~l~ll~----~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
...+..++++++|++..+... ......|..+. ..++|++++.||+|+...-.. ...+......
T Consensus 63 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~--~~~~~~~~~~ 140 (200)
T d2bcjq2 63 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPE 140 (200)
T ss_dssp GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTT--TSCHHHHSTT
T ss_pred CCCCCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCC--CHHHHHHCCC
T ss_conf 20023432046764035233213443130015999999999971142068517986130115665144--1477774631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 6499999999999999999998078213320124789831499478767989114799999999
Q 000626 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 940 q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~ 1003 (1384)
... ...........+...+....... ...+.++.+||++|.||..++..|...+
T Consensus 141 ~~~-~~~~~~~~~~~i~~~f~~~~~~~---------~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 141 YDG-PQRDAQAAREFILKMFVDLNPDS---------DKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp CCS-CSSCHHHHHHHHHHHHHTTCSCT---------TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCC---------CCCEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 038-73359999999999999745367---------9961787748981781999999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=2e-10 Score=93.02 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=100.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98899992899997799999983963455557513752036810332100000001343457797899919998311678
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~ 873 (1384)
...|++||..++|||||+.+|....+. |+.+....+... ...+.+|||.|++.|..+
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~-------t~~~~~~~~~~~----------------~~~~~i~D~~Gq~~~~~~ 58 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEA-------GTGIVETHFTFK----------------DLHFKMFDVGGQRSERKK 58 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSC-------CCSEEEEEEEET----------------TEEEEEEEECCSGGGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCC-------CCCEEEEEEEEE----------------EEEEEEECCCCCCCCCCC
T ss_conf 169999999998889999988408979-------724799999743----------------312210024665100111
Q ss_pred HHHCCCCCCEEEEEEECCCCCC-----------HHHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 8710366661399861468997-----------8889999998----712993699993124434764588813899999
Q 000626 874 RSRGSGLCDIAILVVDIMHGLE-----------PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-----------~QT~E~l~ll----~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+..++..++++++|+|..+... ......|..+ ...++|+++++||+|+...-- ...++.....
T Consensus 59 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~--~~~~~~~~~~ 136 (195)
T d1svsa1 59 WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICYP 136 (195)
T ss_dssp GGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTSCGGGTCT
T ss_pred HHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHC--CCHHHHHHHH
T ss_conf 11014677536668750342117777643678999999999996112027987899815321455413--5348878766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 7649999999999999999999807821332012478983149947876798911479999999
Q 000626 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
.... ..........+...+....-. ...+.+.++.|||++|.||..++..+...
T Consensus 137 ~~~~--~~~~~~~~~~~~~~f~~~~~~--------~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 137 EYAG--SNTYEEAAAYIQCQFEDLNKR--------KDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp TCCS--CSSHHHHHHHHHHHHHTTCSC--------TTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHCC--CCCHHHHHHHHHHHHHHHHCC--------CCCCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 4058--643899999999999997315--------67895055888868878399999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=5.9e-10 Score=89.34 Aligned_cols=178 Identities=17% Similarity=0.118 Sum_probs=100.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99889999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
|-..|+|+|..++|||||+.+|... ....+ |..+....+.... ..+.+|||+|++.|..
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f~---~~~~p--TiG~~~~~~~~~~----------------~~~~~~D~~gq~~~~~ 59 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRII---HGQDP--TKGIHEYDFEIKN----------------VPFKMVDVGGQRSERK 59 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH---HSCCC--CSSEEEEEEEETT----------------EEEEEEEECC------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC---CCCCC--EEEEEEEEEEEEE----------------EEEEEECCCCEEEECC
T ss_conf 9589999989999989999988468---98887--2414999996014----------------4566513531144114
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCH--------HHHHH---HHH-H---HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 887103666613998614689978--------88999---999-8---71299369999312443476458881389999
Q 000626 873 LRSRGSGLCDIAILVVDIMHGLEP--------QTIES---LNL-L---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~--------QT~E~---l~l-l---~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l 937 (1384)
.+..+...++++++|++..+.... ...++ |.. + ...++|+|+++||+|+...-. ...++...+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~f 137 (200)
T d1zcba2 60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV--QVVSIKDYF 137 (200)
T ss_dssp -CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTCCGGGTC
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHC--CCCHHHHHC
T ss_conf 233201000036799984770102310100114467889999996176546963999823114566502--450787747
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 97649999999999999999999807821332012478983149947876798911479999999
Q 000626 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l 1002 (1384)
.... .....+......+...+....-+ .....+.++.|||+++.||..++..+...
T Consensus 138 ~~~~-~~~~~~~~~~~~~~~~f~~~~~~--------~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 138 LEFE-GDPHCLRDVQKFLVECFRGKRRD--------QQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp TTCC-SCTTCHHHHHHHHHHHHHTTCSS--------CC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 2136-89626999999999999985558--------78884677782546758999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=4.6e-10 Score=90.17 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEEEEEEE-----------------------ECCCCCCC---
Q ss_conf 6899889999289999779999998396345555-75137520368-----------------------10332100---
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATY-----------------------FPAENIRE--- 843 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~iga~~-----------------------~~~~~i~~--- 843 (1384)
.-|.++|+|.|.+|+|||||+++|...-...|.. +-++.+....+ -+......
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 69832897438999989999999999997569833220377761000651554136788740565410156555344442
Q ss_pred ---CHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf ---00000134345779789991999831167887103666613998614689978889999998712993699993124
Q 000626 844 ---RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 844 ---~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 920 (1384)
.+..+..-.....+-+.||.|.|.-.-- ......+|..|||+....|-.-|.+... + ..++-|||+||+|
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~g-i---~e~aDi~VvNKaD 203 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG-L---MEVADLIVINKDD 203 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH-H---HHHCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---HHHHHCCCEEEEEECCCCCHHHHHHCHH-H---HCCCCEEEEEEEC
T ss_conf 0332057899988649982787503211210---2344035438997368872555542201-4---2015579998622
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 43476458881389999976499999999999999999998078213320124789831499478767989114799999
Q 000626 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~ 1000 (1384)
+. +++.... . ...+...+....-. ...| ..||+.|||++|+||++|+..|.
T Consensus 204 ~~-------~~~~~~~-------~-------~~~~~~al~~~~~~------~~~w--~p~V~~~SA~~g~Gi~eL~~~I~ 254 (327)
T d2p67a1 204 GD-------NHTNVAI-------A-------RHMYESALHILRRK------YDEW--QPRVLTCSALEKRGIDEIWHAII 254 (327)
T ss_dssp TT-------CHHHHHH-------H-------HHHHHHHHHHSCCS------BTTB--CCEEEECBGGGTBSHHHHHHHHH
T ss_pred CC-------CHHHHHH-------H-------HHHHHHHHHHCCCC------CCCC--CCEEEEEEEECCCCHHHHHHHHH
T ss_conf 55-------4577899-------9-------99999986322557------7777--65048998418999899999999
Q ss_pred HHHH
Q ss_conf 9999
Q 000626 1001 QWTQ 1004 (1384)
Q Consensus 1001 ~l~~ 1004 (1384)
.+..
T Consensus 255 ~~~~ 258 (327)
T d2p67a1 255 DFKT 258 (327)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.98 E-value=1.7e-09 Score=85.69 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=73.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 89999289999779999998396345555751375203681033210000000134345779789991999831167887
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~ 875 (1384)
.|++||..++|||||+.+|....+.. |..+....+.... ..+.+||+.|+..|...+.
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~p------TiG~~~~~~~~~~----------------~~~~~~D~~Gq~~~r~~w~ 65 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVL------TSGIFETKFQVDK----------------VNFHMFDVGGQRDERRKWI 65 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC------CCSCEEEEEEETT----------------EEEEEEECCCSTTTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC------CCCEEEEEEEECC----------------EEEEEEECCCCCEECCCHH
T ss_conf 79999899998899999895098278------8886789999776----------------9999986376512201123
Q ss_pred HCCCCCCEEEEEEECCCCC--------C---HHHHHHHHHHH----HCCCCEEEEEEECCCC
Q ss_conf 1036666139986146899--------7---88899999987----1299369999312443
Q 000626 876 RGSGLCDIAILVVDIMHGL--------E---PQTIESLNLLK----MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv--------~---~QT~E~l~ll~----~~~vP~IVviNKiDl~ 922 (1384)
.++..++++|+|+|..... . ......|..+. ..++|+||++||+|+.
T Consensus 66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHH
T ss_conf 42256651379997254101322321057789989999998617543798389982046665
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.95 E-value=3.2e-08 Score=75.99 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=72.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCH--
Q ss_conf 9889999289999779999998396345-5557513752036810332100000001343457797899919998311--
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F-- 870 (1384)
.+.|+|+|.+|+|||||++.|++..+.. +...+.|.+.......... ..|+||||||..+.
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g----------------~~i~viDTPGl~~~~~ 95 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG----------------FTLNIIDTPGLIEGGY 95 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT----------------EEEEEEECCCSEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEECC----------------EEEEEEEEECCCCCCC
T ss_conf 748999899998699999998589841335889760467898898633----------------8899975213467752
Q ss_pred -----HHHHHH--CCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHC-----CCCEEEEEEECCCCC
Q ss_conf -----678871--03666613998614689-978889999998712-----993699993124434
Q 000626 871 -----TNLRSR--GSGLCDIAILVVDIMHG-LEPQTIESLNLLKMR-----NTEFIVALNKVDRLY 923 (1384)
Q Consensus 871 -----~~~r~r--g~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~-----~vP~IVviNKiDl~~ 923 (1384)
...... .....+.++||+.++.. +.......+..+... ..++||++|++|.+.
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 96 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEEEECCCCCC
T ss_conf 489999999999856898769999978887789999999999998732656638899998864477
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.92 E-value=5.3e-09 Score=81.98 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=94.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEEEEEE----------------------EECCCCCCCCHHH
Q ss_conf 6899889999289999779999998396345555-7513752036----------------------8103321000000
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGAT----------------------YFPAENIRERTRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~iga~----------------------~~~~~~i~~~~~~ 847 (1384)
.-+.++|+|.|.+|+|||||+++|...-...+.. +-|+.+.... |+.....+.....
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg 127 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 127 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 69815986117998889999999999876368751344346554787750641013378875034401126653453311
Q ss_pred CCC-------CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 013-------4345779789991999831167887103666613998614689978889999998712993699993124
Q 000626 848 LKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 848 i~~-------~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 920 (1384)
+.. -.......+.||.|.|--.-. ......+|+.|+|+....|-.-|.+..- .+.++-||++||+|
T Consensus 128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~g----ilE~aDi~vvNKaD 200 (323)
T d2qm8a1 128 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG----IFELADMIAVNKAD 200 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT----HHHHCSEEEEECCS
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEHHHHHHH---HHHHCCCCEEEEEEECCCHHHHHHHHHH----HHHHHHEEEEECCC
T ss_conf 0677899997641489985898632333214---6653366548998614324556563234----76540204675424
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 43476458881389999976499999999999999999998078213320124789831499478767989114799999
Q 000626 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~ 1000 (1384)
+.. .......+.. .+...+.. +.........+++.+||++|+||++|...|.
T Consensus 201 ~~~------~~~~~~~~~~--------------~~~~~l~~--------~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~ 252 (323)
T d2qm8a1 201 DGD------GERRASAAAS--------------EYRAALHI--------LTPPSATWTPPVVTISGLHGKGLDSLWSRIE 252 (323)
T ss_dssp TTC------CHHHHHHHHH--------------HHHHHHTT--------BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred CCC------CHHHHHHHHH--------------HHHHHHHC--------CCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 543------0689999999--------------99998634--------5554457877369998217998799999999
Q ss_pred HHHH
Q ss_conf 9999
Q 000626 1001 QWTQ 1004 (1384)
Q Consensus 1001 ~l~~ 1004 (1384)
.+..
T Consensus 253 ~~~~ 256 (323)
T d2qm8a1 253 DHRS 256 (323)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=5.5e-08 Score=74.18 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=75.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCC---CEE-EEEEE------EEECCCCC--C---CC-------HHH
Q ss_conf 689988999928999977999999839634-55557---513-75203------68103321--0---00-------000
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAG---GIT-QQIGA------TYFPAENI--R---ER-------TRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~geag---GIT-q~iga------~~~~~~~i--~---~~-------~~~ 847 (1384)
.+.-|.|+|+|+..+||||||++|++..+. .+... .+| ..++. .++..... . .. ...
T Consensus 23 ~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (299)
T d2akab1 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHH
T ss_conf 88888699976898979999999968986887897403578899972356522689868997147889999999999988
Q ss_pred -CCC-----C----CCC---CCCCEEEEECCCCCC-------------HHHHHHHCCCCCCEEE-EEEECCCCCCHHH-H
Q ss_conf -013-----4----345---779789991999831-------------1678871036666139-9861468997888-9
Q 000626 848 -LKA-----N----ATL---KVPGLLVIDTPGHES-------------FTNLRSRGSGLCDIAI-LVVDIMHGLEPQT-I 899 (1384)
Q Consensus 848 -i~~-----~----~~~---~~~~i~iIDTPGHe~-------------F~~~r~rg~~~aDiaI-LVVDa~~Gv~~QT-~ 899 (1384)
... . ..+ ..++++||||||... +..+...++..++.+| +|+++...+..+. .
T Consensus 103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~ 182 (299)
T d2akab1 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred HHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 50777676776079997479988725771687433466776314799999999998627560356640345421125999
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 99999871299369999312443476
Q 000626 900 ESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 900 E~l~ll~~~~vP~IVviNKiDl~~~w 925 (1384)
..++.+...+.++|+++||+|++..|
T Consensus 183 ~~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 183 KIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCH
T ss_conf 99997386778136677026655313
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.79 E-value=9.4e-08 Score=72.36 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE-----EEEEEEEECC----------------CCCCCCH---
Q ss_conf 168998899992899997799999983963455557513-----7520368103----------------3210000---
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGATYFPA----------------ENIRERT--- 845 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT-----q~iga~~~~~----------------~~i~~~~--- 845 (1384)
..+..|.|+|+|+..+||||||+.|++..+.....+..| .+++...... .......
T Consensus 20 ~~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (306)
T d1jwyb_ 20 DPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (306)
T ss_dssp CTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHH
T ss_conf 77888859998189897999999996899788789754068889999457766676530656677626886223789999
Q ss_pred --------------HHCCCC-----C-CCCCCCEEEEECCCCCCH-------------HHHHHHCCCCCCEEEEEE-ECC
Q ss_conf --------------000134-----3-457797899919998311-------------678871036666139986-146
Q 000626 846 --------------RELKAN-----A-TLKVPGLLVIDTPGHESF-------------TNLRSRGSGLCDIAILVV-DIM 891 (1384)
Q Consensus 846 --------------~~i~~~-----~-~~~~~~i~iIDTPGHe~F-------------~~~r~rg~~~aDiaILVV-Da~ 891 (1384)
...... . .-..++++||||||.... ..+...++..++.+||+| ++.
T Consensus 100 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~ 179 (306)
T d1jwyb_ 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (306)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999998742777765665069982478988806865888644366884035899999999999827775168763256
Q ss_pred CCCCH-HHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 89978-88999999871299369999312443476
Q 000626 892 HGLEP-QTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 892 ~Gv~~-QT~E~l~ll~~~~vP~IVviNKiDl~~~w 925 (1384)
..+.. .+...++.+...+.++|+|+||+|++..|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp SCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCH
T ss_conf 31003499999997386788589998204445316
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.28 E-value=6.5e-07 Score=65.92 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=61.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE--EEEEEEE-CCCCCCCCHHHCCCC-----CCCCCCCEEEEECCCC
Q ss_conf 8999928999977999999839634555575137--5203681-033210000000134-----3457797899919998
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYF-PAENIRERTRELKAN-----ATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq--~iga~~~-~~~~i~~~~~~i~~~-----~~~~~~~i~iIDTPGH 867 (1384)
-|+|+|.+++|||||+++|++.+...+..++.|. .+|.+.. +.......+...+.. ..+....+.|+|+||.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl 81 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 17688999998999999997889703269977555862623277870465640036865332345556650799988974
Q ss_pred CC-------HHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 31-------16788710366661399861468
Q 000626 868 ES-------FTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 e~-------F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.. ..+...+.++.||++|+|||+..
T Consensus 82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 44300010058999974305527899851556
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.11 E-value=3.3e-06 Score=60.45 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEE--EEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCC---
Q ss_conf 98899992899997799999983963-455557513--752036810332100000001343457797899919998---
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGH--- 867 (1384)
+..|+|+|.+++|||||+++|+..++ ..+..++.| ..+|...+|.......+.... ...+....+.|+|.||.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~-~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYK-PKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHC-CSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCC-CCCEECCCCEEEECCCCCCC
T ss_conf 73799978999989999999977898774789966703876899606634001431056-77444254314413544566
Q ss_pred --CC--HHHHHHHCCCCCCEEEEEEECCC
Q ss_conf --31--16788710366661399861468
Q 000626 868 --ES--FTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 --e~--F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.. ..+.....++.||+.|+||++..
T Consensus 89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 40135508999998612462699985147
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.11 E-value=2.7e-06 Score=61.19 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=64.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC--CCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC---
Q ss_conf 88999928999977999999839634555--5751375203681033210000000134345779789991999831---
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~--- 869 (1384)
..|+|+|-+++|||||+++|+...+..+. +.+|..++|...+|.......+...+.. .+-...|.|+|.||...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~-~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPE-RILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCS-EEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC-CEEEEEEEEEECCCCCCCCC
T ss_conf 34888899999889999999779974136998887784589964358689897743888-45521689997263178853
Q ss_pred ----HHHHHHHCCCCCCEEEEEEECCC
Q ss_conf ----16788710366661399861468
Q 000626 870 ----FTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
..+...+.++.||++|+|||+..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf 578765899999985062588851468
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.04 E-value=0.00013 Score=48.30 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=66.7
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 67887103666613998614689978889999998712993699993124434764588813899999764999999999
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 950 (1384)
.......+..+|++|.|+||..++.........+++ +.|+|+++||+|+++. ..
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~-------~~----------------- 59 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA-------AV----------------- 59 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH-------HH-----------------
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCH-------HH-----------------
T ss_conf 999999997699999998888998988989999986--9985999987368866-------77-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999807821332012478983149947876798911479999999999899
Q 000626 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~ 1008 (1384)
.......|.. ..+.++++|+.++.|+..+...+..++.....
T Consensus 60 -~~~w~~~f~~---------------~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~ 101 (273)
T d1puja_ 60 -TQQWKEHFEN---------------QGIRSLSINSVNGQGLNQIVPASKEILQEKFD 101 (273)
T ss_dssp -HHHHHHHHHT---------------TTCCEEECCTTTCTTGGGHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHH---------------CCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf -9999999984---------------69865122112577753231033322221113
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.01 E-value=1.1e-05 Score=56.59 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEE----------------EEEEEECCCCCCCCHHHCCC---CC
Q ss_conf 99889999289999779999998396345555-751375----------------20368103321000000013---43
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ----------------IGATYFPAENIRERTRELKA---NA 852 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~----------------iga~~~~~~~i~~~~~~i~~---~~ 852 (1384)
++-||+++|..|+||||.+-+|-..-...+.. +-||.+ ++..++.......-...+.. ..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~ 90 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 90 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99899998999999899999999999977993699972023551567898740146842230244102447899999874
Q ss_pred CCCCCCEEEEECCCCCCHH---HHH---H--HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 4577978999199983116---788---7--1036666139986146899788899999987129936999931244347
Q 000626 853 TLKVPGLLVIDTPGHESFT---NLR---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG 924 (1384)
Q Consensus 853 ~~~~~~i~iIDTPGHe~F~---~~r---~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~ 924 (1384)
......+.||||||...+. ..+ . .....++-.+||+++..|.... ..........++.- +++||+|-..
T Consensus 91 ~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~~~-lI~TKlDet~- 167 (211)
T d1j8yf2 91 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKIGT-IIITKMDGTA- 167 (211)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTTEE-EEEECTTSCS-
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHCCCCCCE-EEEECCCCCC-
T ss_conf 02677369985377676313667899999998625976689998435684067-78766530367553-7886036888-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 64588813899999764999999999999999999980782133201247898314994787679891147999
Q 000626 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 998 (1384)
Q Consensus 925 w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~ 998 (1384)
++..+++.+...+ +|+..+| +|++|++|..+
T Consensus 168 --------------------------~~G~~l~~~~~~~---------------lPi~~it--~Gq~v~DL~~~ 198 (211)
T d1j8yf2 168 --------------------------KGGGALSAVAATG---------------ATIKFIG--TGEKIDELEVF 198 (211)
T ss_dssp --------------------------CHHHHHHHHHTTT---------------CCEEEEE--CSSSTTCEEEC
T ss_pred --------------------------CCCHHHHHHHHHC---------------CCEEEEE--CCCCCCCCCCC
T ss_conf --------------------------6149988999989---------------4979996--79980017517
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=2e-05 Score=54.50 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=68.3
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---CC
Q ss_conf 555017999999818504899999920652798898716789606776530389888311001022100101012---46
Q 000626 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1384)
Q Consensus 1015 ~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa---~g 1091 (1384)
.||+++|..+|.+.|.|++++|+|.+|+|+.||.+.+.+++ ...+|+++++|++.+..| ..
T Consensus 2 kP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~~ 65 (94)
T d1f60a1 2 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG----------------VTTEVKSVEMHHEQLEQGVPGDN 65 (94)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT----------------EEEEEEEEEETTEECSCBCTTCE
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 98898998899808822899875611468789899988678----------------32799999995847687648985
Q ss_pred CEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 055015653235799449929986
Q 000626 1092 IKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1092 vki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
+.+.+.++.......+++++.+..
T Consensus 66 v~l~l~~i~~~~i~rG~vl~~~~~ 89 (94)
T d1f60a1 66 VGFNVKNVSVKEIRRGNVCGDAKN 89 (94)
T ss_dssp EEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEECCCHHHCCCCCEEECCCC
T ss_conf 999985760875478789878999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=5e-05 Score=51.38 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-----------CCCEEE------EEEEEEECCCCCCCCHHHCCCC---
Q ss_conf 89988999928999977999999839634555-----------575137------5203681033210000000134---
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQ------QIGATYFPAENIRERTRELKAN--- 851 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----------agGITq------~iga~~~~~~~i~~~~~~i~~~--- 851 (1384)
.++-||+++|..|+||||.+-+|-..-...+. .+++-| .++..++...........+...
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99979999899999989999999999997799479982321366612045554343388621135687799999999999
Q ss_pred CCCCCCCEEEEECCCCCCHHHH-HH------HCC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 3457797899919998311678-87------103-----66661399861468997888999999871299369999312
Q 000626 852 ATLKVPGLLVIDTPGHESFTNL-RS------RGS-----GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~~-r~------rg~-----~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKi 919 (1384)
.......+.||||||...+... +. +.. ...+-.+||+|++.|... ....+......+ +--++++|+
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lIlTKl 164 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA-VSQAKLFHEAVG-LTGITLTKL 164 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHH-HHHHHHHHHHSC-CCEEEEECC
T ss_pred HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCH-HHHHHHHHHCCC-CCEEEEEEC
T ss_conf 987699889965688763207789999999999853046686001220012357633-778764421017-864899612
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 443476458881389999976499999999999999999998078213320124789831499478767989114799
Q 000626 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLL 997 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~ 997 (1384)
|-... ...+++.....+ +|+..+| +|++|++|..
T Consensus 165 De~~~---------------------------~G~~l~~~~~~~---------------~Pi~~i~--~Gq~v~Dl~~ 198 (211)
T d2qy9a2 165 DGTAK---------------------------GGVIFSVADQFG---------------IPIRYIG--VGERIEDLRP 198 (211)
T ss_dssp TTCTT---------------------------TTHHHHHHHHHC---------------CCEEEEE--CSSSGGGEEE
T ss_pred CCCCC---------------------------CCHHHHHHHHHC---------------CCEEEEE--CCCCCCCCCC
T ss_conf 78887---------------------------209999999989---------------7979996--7998103743
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=7.9e-05 Score=49.87 Aligned_cols=123 Identities=25% Similarity=0.245 Sum_probs=74.8
Q ss_pred CCCCCEEEEEEECCC-CCCHHHH-HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 366661399861468-9978889-99999871299369999312443476458881389999976499999999999999
Q 000626 878 SGLCDIAILVVDIMH-GLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~-Gv~~QT~-E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I 955 (1384)
....|.+++|+++.. .+.+.-+ .+|-.+...++|.||++||+|++. .+. ...+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~-------~~~------------------~~~~ 62 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD-------EDD------------------LRKV 62 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC-------HHH------------------HHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-------HHH------------------HHHH
T ss_conf 566888999986789999989999999999986997799996766678-------799------------------9999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHCCCCCC-EEEEEE
Q ss_conf 999998078213320124789831499478767989114799999999----------998998631145550-179999
Q 000626 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1024 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~----------~~~l~e~L~~~~~~~-~~VlEv 1024 (1384)
...+..+ ...++++.+||.+|.|+..|..+|...+ -.+++..|.....+. +.|.+
T Consensus 63 ~~~~~~~-------------~~~~~v~~vSa~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~- 128 (225)
T d1u0la2 63 RELEEIY-------------SGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE- 128 (225)
T ss_dssp HHHHHHH-------------TTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred HHHHCCC-------------CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC-
T ss_conf 9754034-------------66136888415441557669999569808997889877888877305355501068420-
Q ss_pred EEECCCCEEEEEEEE
Q ss_conf 998185048999999
Q 000626 1025 KVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 1025 k~i~G~G~vv~~iV~ 1039 (1384)
..-+|..||....++
T Consensus 129 ~~~rGrHTTt~~~l~ 143 (225)
T d1u0la2 129 KLQRGRHTTTTAQLL 143 (225)
T ss_dssp -------CCCSCCEE
T ss_pred CCCCCCCCCCCEEEE
T ss_conf 048987511331478
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=1.5e-05 Score=55.35 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCC
Q ss_conf 68998899992899997799999983963-455557513752036810332100000001343457797899919998
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGH 867 (1384)
..+...|+|+|.+++|||||+++|++..+ ..+..+|+|.++..... .+.+.++||||.
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-------------------~~~~~l~DTPGi 167 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-------------------GKELELLDTPGI 167 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-------------------TTTEEEEECCCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEC-------------------CCCEEEECCCCC
T ss_conf 77752789986675443555425426615887895322455348987-------------------997599538974
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=3.1e-05 Score=52.95 Aligned_cols=86 Identities=15% Similarity=0.368 Sum_probs=67.7
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---C
Q ss_conf 4555017999999818504899999920652798898716789606776530389888311001022100101012---4
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---Q 1090 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa---~ 1090 (1384)
..||+++|..+|.+.|.|++++|.|.+|+|+.||.+.+.+.... ...+|+++++|++.+..| .
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~--------------~~~~vksi~~~~~~~~~a~aG~ 68 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKET--------------QKSTCTGVEMFRKLLDEGRAGE 68 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSC--------------EEEEEEEEEETTEEESEEETTC
T ss_pred CCCEEEEEEEEEECCCEEEEEEEEECCCEECCCCEEEEECCCCC--------------CEEEEEEEEECCCCCCCCCCCC
T ss_conf 87889898979982985798897863676818999999727998--------------1899999999884705537888
Q ss_pred CCEEECCCCCCCCCCCCEEEECC
Q ss_conf 60550156532357994499299
Q 000626 1091 GIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1091 gvki~~~gL~~a~aG~~l~v~~~ 1113 (1384)
.+.+.+.|++......+++++.|
T Consensus 69 ~v~l~L~gi~~~~i~rG~vl~~p 91 (92)
T d1efca1 69 NVGVLLRGIKREEIERGQVLAKP 91 (92)
T ss_dssp EEEEEETTCCGGGCCTTCEEECT
T ss_pred EEEEEECCCCHHHCCCCCEEECC
T ss_conf 89999848889980785599679
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.81 E-value=3.2e-05 Score=52.89 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEE----------------EEEEEECCCCCCCCHHHCC---CCC
Q ss_conf 99889999289999779999998396345555-751375----------------2036810332100000001---343
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ----------------IGATYFPAENIRERTRELK---ANA 852 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~----------------iga~~~~~~~i~~~~~~i~---~~~ 852 (1384)
++-+|+++|..|+||||.+-+|...-...+.. +-||.+ ++..++...........+. ...
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 89 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 89 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999977990699960133420467888776432764103677776899878878999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHH-------HC-----CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 45779789991999831167887-------10-----3666613998614689978889999998712993699993124
Q 000626 853 TLKVPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 853 ~~~~~~i~iIDTPGHe~F~~~r~-------rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 920 (1384)
......+.||||||...+..... .. ...++-.+||++++.|.. .....+......+ +--++++|+|
T Consensus 90 ~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~-~~~lI~TKlD 167 (213)
T d1vmaa2 90 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN-GLVQAKIFKEAVN-VTGIILTKLD 167 (213)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH-HHHHHHHHHHHSC-CCEEEEECGG
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-HHHHHHHHCCCCC-CCEEEEECCC
T ss_conf 8769998998245533016888899888876642025666502578621234843-3556565401227-8658984246
Q ss_pred CC
Q ss_conf 43
Q 000626 921 RL 922 (1384)
Q Consensus 921 l~ 922 (1384)
-.
T Consensus 168 e~ 169 (213)
T d1vmaa2 168 GT 169 (213)
T ss_dssp GC
T ss_pred CC
T ss_conf 78
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.80 E-value=4.6e-05 Score=51.68 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=64.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-----------CCCCEEE------EEEEEEECCCCCCCCHHHCCC---C
Q ss_conf 8998899992899997799999983963455-----------5575137------520368103321000000013---4
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQ------QIGATYFPAENIRERTRELKA---N 851 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-----------eagGITq------~iga~~~~~~~i~~~~~~i~~---~ 851 (1384)
.++-+|+++|..|+||||.+-+|-..-...+ +.+++-| .++..++...........+.. .
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 83 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA 83 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99779999899999889999999999997799079998136665402667640545682389616774278899998999
Q ss_pred CCCCCCCEEEEECCCCCCHHHH-------HHHC-----CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 3457797899919998311678-------8710-----366661399861468997888999999871299369999312
Q 000626 852 ATLKVPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~~-------r~rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKi 919 (1384)
.......+.||||||...+... ..+. ....+-.+||++++.|.. .....+......++. -+++||+
T Consensus 84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~~-~lI~TKl 161 (207)
T d1okkd2 84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVGLT-GVIVTKL 161 (207)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHCCS-EEEEECT
T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH-HHHHHHHHHHCCCCC-EEEEECC
T ss_conf 99879999971752223112778888777777765325678735999962004716-789999750213886-4898336
Q ss_pred CCCC
Q ss_conf 4434
Q 000626 920 DRLY 923 (1384)
Q Consensus 920 Dl~~ 923 (1384)
|-..
T Consensus 162 Det~ 165 (207)
T d1okkd2 162 DGTA 165 (207)
T ss_dssp TSSC
T ss_pred CCCC
T ss_conf 8888
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.00016 Score=47.61 Aligned_cols=130 Identities=19% Similarity=0.107 Sum_probs=65.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC------CCCCCCCCEEEEEEE---EEECCCCCCCCHHHCCC--CC---------
Q ss_conf 99889999289999779999998396------345555751375203---68103321000000013--43---------
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGA---TYFPAENIRERTRELKA--NA--------- 852 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~------v~~geagGITq~iga---~~~~~~~i~~~~~~i~~--~~--------- 852 (1384)
+-|++.|.|..|+||||||++|+... |-.++.|.+..+-.. .......+...|..+.. ..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~ 81 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 81 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEECCCHHHHHHHHHHHH
T ss_conf 97889986488899999999998567898379997366411223343025665248843884000000367777889999
Q ss_pred ----CCCCCCEEEEECCCCCCHHHHHHH--------CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf ----457797899919998311678871--------03666613998614689978889999998712993699993124
Q 000626 853 ----TLKVPGLLVIDTPGHESFTNLRSR--------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 853 ----~~~~~~i~iIDTPGHe~F~~~r~r--------g~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 920 (1384)
....+...||-|.|-.....+... .....+.+|.|||+..+........+ ...+....=+|++||+|
T Consensus 82 ~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~-~~~Qi~~AD~ivlNK~D 160 (222)
T d1nija1 82 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRILLTKTD 160 (222)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHH-HHHHHHTCSEEEEECTT
T ss_pred HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCC
T ss_conf 98604677653678622421046899998852014442111340213335544444334678-99999868830244645
Q ss_pred CCC
Q ss_conf 434
Q 000626 921 RLY 923 (1384)
Q Consensus 921 l~~ 923 (1384)
++.
T Consensus 161 l~~ 163 (222)
T d1nija1 161 VAG 163 (222)
T ss_dssp TCS
T ss_pred CCC
T ss_conf 533
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=97.71 E-value=7.7e-05 Score=49.96 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---
Q ss_conf 14555017999999818504899999920652798898716789606776530389888311001022100101012---
Q 000626 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa--- 1089 (1384)
...||+++|..+|.+.|.|++++|.+.+|+|+.||.+.+++..... ..+|+++++|++.+..|
T Consensus 4 ~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~--------------~~~V~si~~~~~~~~~a~aG 69 (98)
T d1d2ea1 4 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNI--------------RTVVTGIEMFHKSLDRAEAG 69 (98)
T ss_dssp TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEE--------------EEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCEEEEEEECCCEEEECCCCCCE--------------EEEEEEEEEECCEECCCCCC
T ss_conf 8987898998789838927887630400368389999973578770--------------57999999916386207887
Q ss_pred CCCEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 46055015653235799449929986
Q 000626 1090 QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
..+.+.+.|++......+++++.|..
T Consensus 70 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 95 (98)
T d1d2ea1 70 DNLGALVRGLKREDLRRGLVMAKPGS 95 (98)
T ss_dssp CEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 89999985898998567019957998
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.69 E-value=0.00011 Score=48.75 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=67.2
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---C
Q ss_conf 4555017999999818504899999920652798898716789606776530389888311001022100101012---4
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---Q 1090 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa---~ 1090 (1384)
..||+++|..+|.+.|.|+++.|.|..|+|+.||.+++++++ ...+|+++++|+..+..| .
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~ 66 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG----------------KVGEVRSIETHHTKMDKAEPGD 66 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTT----------------EEEEEEEEEETTEEESEECTTC
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC----------------CEEEEEEEEECCCCCCEEECCC
T ss_conf 868898999999729964378899714212489999998089----------------6479999885697457892898
Q ss_pred CCEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 6055015653235799449929986
Q 000626 1091 GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1091 gvki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
.+.+.+.+++......+++++.++.
T Consensus 67 ~v~l~l~~i~~~~i~rG~vl~~~~~ 91 (95)
T d1jnya1 67 NIGFNVRGVEKKDIKRGDVVGHPNN 91 (95)
T ss_dssp EEEEEEESSCGGGCCTTCEEECTTS
T ss_pred CEEEEEECCCHHHCCCCCEEECCCC
T ss_conf 6999997685874289799988995
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=8.7e-05 Score=49.54 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=69.4
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---
Q ss_conf 14555017999999818504899999920652798898716789606776530389888311001022100101012---
Q 000626 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa--- 1089 (1384)
...+|+++|..+|.+.|.|++++|.|.+|+|+.||.+.+.+.. |. ....+|++++.|+..+..|
T Consensus 5 ~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~------------p~-~~~~~V~sI~~~~~~~~~a~aG 71 (100)
T d2c78a1 5 VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA------------PE-TRKTVVTGVEMHRKTLQEGIAG 71 (100)
T ss_dssp CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSS------------SS-CEEEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEECCEEECCCEEEEEEEC------------CC-CCEEEEEEEEECCCCCCEEECC
T ss_conf 8999899999999729967899999963579789871787606------------89-8189999999879640589389
Q ss_pred CCCEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 46055015653235799449929986
Q 000626 1090 QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
..+.+.+.|++......+++++.+..
T Consensus 72 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 97 (100)
T d2c78a1 72 DNVGVLLRGVSREEVERGQVLAKPGS 97 (100)
T ss_dssp CEEEEEESSCCTTTCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 81899981777887358689977998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.46 E-value=0.00011 Score=48.81 Aligned_cols=125 Identities=17% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCCCEEEEEEECCC-CCCHHHH-HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 366661399861468-9978889-99999871299369999312443476458881389999976499999999999999
Q 000626 878 SGLCDIAILVVDIMH-GLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~-Gv~~QT~-E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I 955 (1384)
....|.+++|+++.+ .+....+ .+|-.+...+++.||++||+|++. ....... +..+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~------~~~~~~~---------------~~~~ 66 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE------DQDTEDT---------------IQAY 66 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC------CHHHHHH---------------HHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------CHHHHHH---------------HHHH
T ss_conf 565688999987889999989999999999986997799995601136------4888889---------------9999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHCCCCCC-EEEEEE
Q ss_conf 999998078213320124789831499478767989114799999999----------998998631145550-179999
Q 000626 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1024 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~----------~~~l~e~L~~~~~~~-~~VlEv 1024 (1384)
.......| ++++.+||.+|.|+..|..+|.... -.+++..|.....+. +.|.+
T Consensus 67 ~~~y~~~g---------------~~v~~~Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~- 130 (231)
T d1t9ha2 67 AEDYRNIG---------------YDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE- 130 (231)
T ss_dssp HHHHHHHT---------------CCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HHHHHHCC---------------CCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC-
T ss_conf 99976445---------------55046624871679999986435649998778734878987515176764035553-
Q ss_pred EEECCCCEEEEEEEE
Q ss_conf 998185048999999
Q 000626 1025 KVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 1025 k~i~G~G~vv~~iV~ 1039 (1384)
..-.|..||....++
T Consensus 131 ~~~rGrHTTt~~~l~ 145 (231)
T d1t9ha2 131 HLGRGKHTTRHVELI 145 (231)
T ss_dssp --------CCCCCEE
T ss_pred CCCCCCEEEEEEEEE
T ss_conf 358971244347888
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.39 E-value=0.00029 Score=45.56 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=60.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEE----------------EEEEEECCCCCCCCHHHC---CCCCCCC
Q ss_conf 89999289999779999998396345555-751375----------------203681033210000000---1343457
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ----------------IGATYFPAENIRERTREL---KANATLK 855 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~----------------iga~~~~~~~i~~~~~~i---~~~~~~~ 855 (1384)
+|+++|..|+||||.+-+|-..-...+.. +-||.+ ++..+............. .......
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 91 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89998999998899999999999977992799954434640888899999862886311124420367888898887633
Q ss_pred CCCEEEEECCCCCCHHHHHH------HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 79789991999831167887------10366661399861468997888999999871299369999312443
Q 000626 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~iIDTPGHe~F~~~r~------rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~ 922 (1384)
...+.||||||...+..... .....++..+||++++.|..... .........++ -=++++|+|-.
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~~~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VARAFDEKVGV-TGLVLTKLDGD 162 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HHHHHHHHTCC-CEEEEECGGGC
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH-HHHHHHHHCCC-CEEEEEECCCC
T ss_conf 6764033454420000366889999986318736999843455616899-99999864799-70588603765
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.38 E-value=8.9e-05 Score=49.46 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCC-CCEEEEECCCCCC
Q ss_conf 89988999928999977999999839634-555575137520368103321000000013434577-9789991999831
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~-~~i~iIDTPGHe~ 869 (1384)
++.-+.+++|+.|+|||||+++|...... .++ |+...+. .++-|.. . .-+.. .+..+|||||...
T Consensus 93 l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~---vs~~~~r-------GrHTTt~--~-~l~~l~~gg~iiDTPG~r~ 159 (225)
T d1u0la2 93 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE---VSEKLQR-------GRHTTTT--A-QLLKFDFGGYVVDTPGFAN 159 (225)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----------------------CCCS--C-CEEECTTSCEEESSCSSTT
T ss_pred HCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCC---CCCCCCC-------CCCCCCC--E-EEEEECCCCEEEECCCCCC
T ss_conf 569808997889877888877305355501068---4200489-------8751133--1-4789789917996876554
Q ss_pred HH
Q ss_conf 16
Q 000626 870 FT 871 (1384)
Q Consensus 870 F~ 871 (1384)
|.
T Consensus 160 ~~ 161 (225)
T d1u0la2 160 LE 161 (225)
T ss_dssp CC
T ss_pred CC
T ss_conf 55
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.20 E-value=3.3e-05 Score=52.81 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---
Q ss_conf 14555017999999818504899999920652798898716789606776530389888311001022100101012---
Q 000626 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa--- 1089 (1384)
...+|+++|..+|.+.|.|++++|.|.+|+++.||.|.+++++ ...+|+++++|++.+..|
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG 66 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAKAG 66 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC----------------CCEEECCBCGGGSCBCCCCSS
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEEECCC----------------CCEEEEEEEECCCEEEEECCC
T ss_conf 8987899999999828957998769810658169769972358----------------706777666858142480899
Q ss_pred CCCEEECCCCCCCCCCCCEEEECCC
Q ss_conf 4605501565323579944992998
Q 000626 1090 QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~l~v~~~~ 1114 (1384)
..+.+.+.|++......+.+++.++
T Consensus 67 d~v~l~L~gi~~~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 67 DRVGMAIQGVDAKQIYRGCILTSKD 91 (92)
T ss_dssp CCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred CEEEEEECCCCHHHCCCCCEEECCC
T ss_conf 8977998088889848869996899
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.16 E-value=0.0028 Score=37.97 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEECCCC
Q ss_conf 7978999199983116788710366661399861468997888999999871299369-999312443
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VviNKiDl~ 922 (1384)
.+.+.|||||+.... .....+..+|.+|+|+..+..-..++.+.+..+...++|++ |++|+.++.
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~ 176 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CCCEEEECCCCCCCC--CCHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 289899804332111--100122222103434321000011036777777531023443210135653
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.06 E-value=0.002 Score=39.12 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCC-CEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---C
Q ss_conf 555-017999999818504899999920652798898716789606776530389888311001022100101012---4
Q 000626 1015 NEL-QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---Q 1090 (1384)
Q Consensus 1015 ~~~-~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa---~ 1090 (1384)
.|+ +++|..+|.+.| |++++|.|.+|+|+.||.|.+.+ . ..+|+++++|++.+..| .
T Consensus 7 kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p----~--------------~~~VksIq~~~~~v~~a~~G~ 67 (91)
T d1xe1a_ 7 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPS----G--------------IGGIVRIERNREKVEFAIAGD 67 (91)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSS----C--------------EEEEEEEEETTEEESEEETTC
T ss_pred CCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCCEEEECC----C--------------CEEEEEEEECCEEHHHHHHCC
T ss_conf 9853736887999899-67999998028868999999899----6--------------189999988045820320123
Q ss_pred CCEEECCC
Q ss_conf 60550156
Q 000626 1091 GIKITAQG 1098 (1384)
Q Consensus 1091 gvki~~~g 1098 (1384)
.+.+.+.+
T Consensus 68 ~v~l~L~~ 75 (91)
T d1xe1a_ 68 RIGISIEG 75 (91)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
T ss_conf 46899868
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.00013 Score=48.14 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6899889999289999779999998396
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.++.-+.+++|+.|+|||||+++|+...
T Consensus 94 ~l~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 94 HFQDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 6435649998778734878987515176
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=96.92 E-value=0.0017 Score=39.52 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHH
Q ss_conf 14555017999999818504--------8999999206527988987167896067765303898883110010221001
Q 000626 1013 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~--------vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k 1084 (1384)
...+++++|..+|.+.|.|+ +++|.|.+|+|+.||.|.+.+... ..+...+. .-....+|+++++|++
T Consensus 5 ~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~--~~~~~~~~--~~~~~~~V~sI~~~~~ 80 (121)
T d1kk1a1 5 PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVP--YEEHGRIK--YEPITTEIVSLQAGGQ 80 (121)
T ss_dssp TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEE--EEETTEEE--EEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEECCCEEEECCCCC--CCCCCCEE--CEEEEEEEEEEEECCC
T ss_conf 8999688999899844899762247622778546278784099899878972--01145011--1020058989997897
Q ss_pred HHCCCC---CCEEECC---CCCCCCCCCCEEEECCCC
Q ss_conf 010124---6055015---653235799449929986
Q 000626 1085 QIKAAQ---GIKITAQ---GLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1085 ~V~aa~---gvki~~~---gL~~a~aG~~l~v~~~~~ 1115 (1384)
.+..|. .+.+.+. ++.+.....+++++.+..
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~ 117 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred CCCEEECCCEEEEEECCCCCCCHHHHCCEEEEECCCC
T ss_conf 7398968996999962467823347332547888998
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.82 E-value=0.005 Score=36.01 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEECCCCC------CEEEEEEECCCCCCCCCCEECEE
Q ss_conf 4555017999999818504--------899999920652798898716789------60677653038988831100102
Q 000626 1014 RNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQG------PIVTTIRALLTPHPMKELRVKGT 1079 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~--------vv~~iV~~G~Lk~GD~Ivv~g~~g------~i~t~Ir~ll~p~p~~e~rvk~~ 1079 (1384)
..+++++|..+|.+.+.|+ +++|.|.+|+|+.||.|.+.+++. ..++. ...+|+++
T Consensus 4 ~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~----------~~t~V~sI 73 (118)
T d1s0ua1 4 DATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKP----------LTTKIVSL 73 (118)
T ss_dssp TSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEE----------EEEECCEE
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEECCEEEECCCCCCCCCCEEEEEE----------EEEEEEEE
T ss_conf 98957899867711589986445555177755536478638889987787301266030012----------10799899
Q ss_pred EECHHHHCCC---CCCEEECC---CCCCCCCCCCEEEECCC
Q ss_conf 2100101012---46055015---65323579944992998
Q 000626 1080 YLHHKQIKAA---QGIKITAQ---GLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1080 ~~~~k~V~aa---~gvki~~~---gL~~a~aG~~l~v~~~~ 1114 (1384)
++|+..+..| +.+.+.+. ++.+...-.+.+++.+.
T Consensus 74 ~~~~~~v~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg 114 (118)
T d1s0ua1 74 AAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPG 114 (118)
T ss_dssp EETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred EECCCCCCEEECCCEEEEEECCCCCCCHHHHEEEEEEECCC
T ss_conf 97896637882899799996467894578910014786799
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=96.82 E-value=0.005 Score=36.03 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHC-CCCC
Q ss_conf 145550179999998185048999999206527988987167896067765303898883110010221001010-1246
Q 000626 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQG 1091 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~-aa~g 1091 (1384)
...+|++.|+.+.+...+|.++.++|++|+|+.|+.|..++.+. .-+|..|+.+...... +|. +.+|
T Consensus 23 ~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~--~~rv~~l~~~~g~~~~----------~v~~~~aG 90 (121)
T d2bv3a1 23 PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR--KERVARLLRMHANHRE----------EVEELKAG 90 (121)
T ss_dssp TTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTE--EEEECEEEEECSSCEE----------EESEEETT
T ss_pred CCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCC--EEEEEEEEEEECCCCC----------EEEEECCC
T ss_conf 99887899974330678886775121125568999999814997--7997243552036633----------82086045
Q ss_pred CEEECCCCCCCCCCCCEEEECC
Q ss_conf 0550156532357994499299
Q 000626 1092 IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1092 vki~~~gL~~a~aG~~l~v~~~ 1113 (1384)
-.+++.||..+..|++|.-...
T Consensus 91 dI~~i~gl~~~~~GDTl~~~~~ 112 (121)
T d2bv3a1 91 DLGAVVGLKETITGDTLVGEDA 112 (121)
T ss_dssp CEEEEESCSSCCTTCEEEETTS
T ss_pred CCEEEECCCCCEECCEEECCCC
T ss_conf 4367866588602777746999
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.71 E-value=0.002 Score=39.02 Aligned_cols=83 Identities=12% Similarity=0.258 Sum_probs=48.2
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEE-CHHHHCC---C
Q ss_conf 45550179999998185048999999206527988987167896067765303898883110010221-0010101---2
Q 000626 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL-HHKQIKA---A 1089 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~-~~k~V~a---a 1089 (1384)
..||+++|..+| +|.|++++|.|.+|+|+.||.|++.+++ .... |++++. ++..+.. +
T Consensus 7 ~~PlR~pV~d~~--kg~G~vv~G~v~sG~i~~gd~v~i~P~~--~~~~--------------Vk~I~~~~~~~v~~a~aG 68 (95)
T d1r5ba1 7 NAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPIN--QTLE--------------VTAIYDEADEEISSSICG 68 (95)
T ss_dssp TSCCEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETTT--EEEE--------------EEEEECTTCCEESEEETT
T ss_pred CCCEEEEEEEEE--CCCCEEEEEEEEECEEECCCEEEEECCC--CEEE--------------EEEEEEECCCCCCCCCCC
T ss_conf 999898998898--1998799999936769679999994179--8899--------------999999746665672899
Q ss_pred CCCEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 46055015653235799449929986
Q 000626 1090 QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
..+.+.+.|.. ...-.+.+++.++.
T Consensus 69 d~V~l~l~~~~-~di~rG~vl~~~~~ 93 (95)
T d1r5ba1 69 DQVRLRVRGDD-SDVQTGYVLTSTKN 93 (95)
T ss_dssp CEEEEEEESCC-TTCCTTCEEECSSS
T ss_pred CEEEEEECCCC-CCCCCCCEEECCCC
T ss_conf 87999982840-06699779975799
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.60 E-value=0.0091 Score=34.02 Aligned_cols=76 Identities=29% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCC
Q ss_conf 62016899958989996306730997760599132125771011236432333379808999834996000001153246
Q 000626 1262 NCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1262 ~~vf~~~~p~IaG~~V~~G~ik~g~~i~v~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
+.+|+-+-+.|+-.+|..|+|++|..|.+... ..+|.||+.+++++++|..|+.|+|.|.+ +. .++.
T Consensus 15 d~vf~i~GgtVvtGtV~sG~i~~Gd~v~~~p~----~~~VksIq~~~~~v~~a~~G~~v~l~L~~-~~--------~di~ 81 (91)
T d1xe1a_ 15 EEVVNIMGKDVIIGTVESGMIGVGFKVKGPSG----IGGIVRIERNREKVEFAIAGDRIGISIEG-KI--------GKVK 81 (91)
T ss_dssp EEEEEETTEEEEEEEEEEEEEETTCEEECSSC----EEEEEEEEETTEEESEEETTCEEEEEEES-CC--------CCCC
T ss_pred EEEEEECCCEEEEEEEEECCCCCCCEEEECCC----CEEEEEEEECCEEHHHHHHCCEEEEEECC-CC--------CCCC
T ss_conf 87999899679999980288689999998996----18999998804582032012346899868-84--------7768
Q ss_pred CCCEEEEEC
Q ss_conf 799599944
Q 000626 1342 IEDELVSHI 1350 (1384)
Q Consensus 1342 ~~d~l~s~i 1350 (1384)
-||+|-.+-
T Consensus 82 rGdvL~~~~ 90 (91)
T d1xe1a_ 82 KGDVLEIYQ 90 (91)
T ss_dssp TTCEEEEEC
T ss_pred CCCEEEECC
T ss_conf 878998545
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.006 Score=35.38 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=63.4
Q ss_pred CEEEEECCCCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHH
Q ss_conf 3046661562016-899958989996306730997760-59913212577101123643233337980899983499600
Q 000626 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~l~i~~~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~ 1331 (1384)
|-.|-| ..+|+ +..+.|+--+|..|+|++|..+++ +.+. ....+|.||+.++++++.|..|+.|+|.|.|.+.
T Consensus 5 P~rlpI--d~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~-~~~~~vksi~~~~~~~~~a~aG~~v~l~L~gi~~-- 79 (92)
T d1efca1 5 PFLLPI--EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE-TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR-- 79 (92)
T ss_dssp CCEEEC--CEEEECTTSCEEEEEECCBSEEETTCEEEEESSSS-CEEEEEEEEEETTEEESEEETTCEEEEEETTCCG--
T ss_pred CEEEEE--EEEEECCCEEEEEEEEECCCEECCCCEEEEECCCC-CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCH--
T ss_conf 889898--97998298579889786367681899999972799-8189999999988470553788889999848889--
Q ss_pred HHCCCCCCCCCCCEEE
Q ss_conf 0001153246799599
Q 000626 1332 QQKMFGRHFDIEDELV 1347 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~ 1347 (1384)
-++.-|++|.
T Consensus 80 ------~~i~rG~vl~ 89 (92)
T d1efca1 80 ------EEIERGQVLA 89 (92)
T ss_dssp ------GGCCTTCEEE
T ss_pred ------HHCCCCCEEE
T ss_conf ------9807855996
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0086 Score=34.18 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=60.0
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCC
Q ss_conf 62016-899958989996306730997760-5991321257710112364323333798089998349960000011532
Q 000626 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1339 (1384)
Q Consensus 1262 ~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~ 1339 (1384)
..+|+ +..+.|+--+|.+|+|+.|..+.+ +.+ ...+|.||+.+++++++|..|+.|||.|.+.+. .+
T Consensus 9 ~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~--------~~ 77 (94)
T d1f60a1 9 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG---VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSV--------KE 77 (94)
T ss_dssp EEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT---EEEEEEEEEETTEECSCBCTTCEEEEEESSCCT--------TT
T ss_pred EEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC---CEEEEEEEEECCCCCCEECCCCEEEEEEECCCH--------HH
T ss_conf 8899808822899875611468789899988678---327999999958476876489859999857608--------75
Q ss_pred CCCCCEEE
Q ss_conf 46799599
Q 000626 1340 FDIEDELV 1347 (1384)
Q Consensus 1340 f~~~d~l~ 1347 (1384)
+.-|++|.
T Consensus 78 i~rG~vl~ 85 (94)
T d1f60a1 78 IRRGNVCG 85 (94)
T ss_dssp SCTTCEEE
T ss_pred CCCCCEEE
T ss_conf 47878987
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.17 E-value=0.012 Score=33.04 Aligned_cols=87 Identities=20% Similarity=0.136 Sum_probs=60.4
Q ss_pred HCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHC-CCC
Q ss_conf 1145550179999998185048999999206527988987167896067765303898883110010221001010-124
Q 000626 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQ 1090 (1384)
Q Consensus 1012 ~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~-aa~ 1090 (1384)
....++.+.|+.+.+...+|.+..++|++|+|+.||.|...+.. . ++..++...... ...+. +..
T Consensus 5 ~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~-~---~~~~~~~~~~~~----------~~~v~~~~a 70 (103)
T d2dy1a1 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ-V---RLPHLYVPMGKD----------LLEVEEAEA 70 (103)
T ss_dssp HCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSC-E---EESSEEEEETTE----------EEEESCEET
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECC-C---CCCEEEEEECCC----------CEECCEECC
T ss_conf 79999589999977258998799999921565799999975423-2---211023440476----------203677158
Q ss_pred CCEEECCCCCCCCCCCCEEEEC
Q ss_conf 6055015653235799449929
Q 000626 1091 GIKITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1091 gvki~~~gL~~a~aG~~l~v~~ 1112 (1384)
|..+++.|+..+.+|+++...+
T Consensus 71 GdI~~v~g~~~~~iGDTl~~~~ 92 (103)
T d2dy1a1 71 GFVLGVPKAEGLHRGMVLWQGE 92 (103)
T ss_dssp TCEEEESSCTTCCTTCEEESSS
T ss_pred CCEEEEECCCCCCCCCEECCCC
T ss_conf 9799995877776578881799
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=96.15 E-value=0.012 Score=33.01 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEEC-CCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCC
Q ss_conf 62016-8999589899963067309977605-991321257710112364323333798089998349960000011532
Q 000626 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1339 (1384)
Q Consensus 1262 ~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~ 1339 (1384)
..+|. ...+.|+--+|..|+|+.|..+++. ...--...+|.||+.+++.+.+|..|+.|+|.|.+.+. -+
T Consensus 14 d~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~~~~~~a~aG~~v~l~l~gi~~--------~~ 85 (100)
T d2c78a1 14 EDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR--------EE 85 (100)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCT--------TT
T ss_pred EEEEECCCCEEEEEEEEECCEEECCCEEEEEEECCCCCEEEEEEEEECCCCCCEEECCCEEEEEECCCCH--------HH
T ss_conf 9999729967899999963579789871787606898189999999879640589389818999817778--------87
Q ss_pred CCCCCEEE
Q ss_conf 46799599
Q 000626 1340 FDIEDELV 1347 (1384)
Q Consensus 1340 f~~~d~l~ 1347 (1384)
+.-|++|.
T Consensus 86 i~rG~vl~ 93 (100)
T d2c78a1 86 VERGQVLA 93 (100)
T ss_dssp CCTTCEEE
T ss_pred CCCCCEEE
T ss_conf 35868997
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=96.05 E-value=0.011 Score=33.52 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=63.1
Q ss_pred CEEEEECCCCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHH
Q ss_conf 3046661562016-899958989996306730997760-59913212577101123643233337980899983499600
Q 000626 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~l~i~~~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~ 1331 (1384)
|-.|-| ..+|. +..+.|+-=.|..|+|+.|..+.+ .... -...+|.||+.+++++++|..|+-|||.|.|-+.
T Consensus 7 Pfr~pI--d~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~-~~~~~V~si~~~~~~~~~a~aG~~v~l~l~gi~~-- 81 (98)
T d1d2ea1 7 PFLLPV--ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK-NIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKR-- 81 (98)
T ss_dssp CCEEEC--CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTE-EEEEEEEEEEETTEEESEEETTCEEEEEESSCCG--
T ss_pred CEEEEE--EEEEEECCCEEEEECCEEEEEEECCCEEEECCCCC-CEEEEEEEEEEECCEECCCCCCCEEEEEECCCCH--
T ss_conf 789899--87898389278876304003683899999735787-7057999999916386207887899999858989--
Q ss_pred HHCCCCCCCCCCCEEEE
Q ss_conf 00011532467995999
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
-++.-|++|.+
T Consensus 82 ------~~i~rG~vl~~ 92 (98)
T d1d2ea1 82 ------EDLRRGLVMAK 92 (98)
T ss_dssp ------GGCCTTCEEES
T ss_pred ------HHCCCCCEEEC
T ss_conf ------98567019957
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=96.00 E-value=0.0058 Score=35.49 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=50.1
Q ss_pred CCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCC
Q ss_conf 20168-99958989996306730997760-59913212577101123643233337980899983499600000115324
Q 000626 1263 CVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~~-~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~f 1340 (1384)
+|++. .+..++.=+|..|+|++|..|.+ +.+. ..+|.+|+.+++++++|..|+.|+|.|.+. -++
T Consensus 13 ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~---~~~Vk~I~~~~~~~~~a~~G~~v~l~L~~~----------~di 79 (92)
T d1zunb1 13 YVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK---SSRVKSIVTFEGELEQAGPGQAVTLTMEDE----------IDI 79 (92)
T ss_dssp EEECSSSSCCEEEEECCBSCEETTCEEEETTTCC---EEEEEEEEETTEEESEECTTCEEEEEESSC----------CCC
T ss_pred EEECCCCCCCEEEEEECCCEEECCCEEEECCCCC---EEEEEEEEECCCCCCEECCCCEEEEEECCC----------CCC
T ss_conf 9981599805899998604796699999889995---288767798574568895999989997681----------144
Q ss_pred CCCCEEEEE
Q ss_conf 679959994
Q 000626 1341 DIEDELVSH 1349 (1384)
Q Consensus 1341 ~~~d~l~s~ 1349 (1384)
.-||+|.+.
T Consensus 80 ~RGdvl~~~ 88 (92)
T d1zunb1 80 SRGDLLVHA 88 (92)
T ss_dssp CTTCEEEET
T ss_pred CCCCEEECC
T ss_conf 998899658
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.019 Score=31.55 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCC-CCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH-
Q ss_conf 899992899997799999983963--45555-75137520368103321000000013434577978999199983116-
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGTNV--QEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v--~~gea-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~- 871 (1384)
+|+|+|...+|||+||+.|.++.. ..+.. ...|..|-.+..|.... ....+.|+||.|..+..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~-------------~~~~~~~lDteG~~~~~~ 100 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKK-------------PGHILVLLDTEGLGDVEK 100 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSS-------------TTCEEEEEEECCBCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-------------CCCEEEEEECCCCCCCCC
T ss_conf 9998899999799999998099878764787777777658998541578-------------874699982454345444
Q ss_pred -------HHHHHCCCCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf -------7887103666613998614689978889999
Q 000626 872 -------NLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902 (1384)
Q Consensus 872 -------~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l 902 (1384)
.+....+.++++.|+-+. ..+..+....+
T Consensus 101 ~~~~~~~~i~~l~~llSs~~i~N~~--~~~~~~~l~~L 136 (277)
T d1f5na2 101 GDNQNDSWIFALAVLLSSTFVYNSI--GTINQQAMDQL 136 (277)
T ss_dssp CCCTTHHHHHHHHHHHCSEEEEEEE--SCSSHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCEEEEECC--CCCCHHHHHHH
T ss_conf 6504579999999997287999321--55768999998
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.65 E-value=0.024 Score=30.77 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=60.7
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCC
Q ss_conf 62016-899958989996306730997760-5991321257710112364323333798089998349960000011532
Q 000626 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1339 (1384)
Q Consensus 1262 ~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~ 1339 (1384)
+.+|+ +..+.|+--+|..|+|+.|..+.+ +.+ ...+|.||+.++.++++|..|+.|+|.|.+.+. -+
T Consensus 11 ~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~--------~~ 79 (95)
T d1jnya1 11 QDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG---KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEK--------KD 79 (95)
T ss_dssp EEEEEETTTEEEEEEECCBSCEETTCEEEEETTT---EEEEEEEEEETTEEESEECTTCEEEEEEESSCG--------GG
T ss_pred EEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC---CEEEEEEEEECCCCCCEEECCCCEEEEEECCCH--------HH
T ss_conf 9999729964378899714212489999998089---647999988569745789289869999976858--------74
Q ss_pred CCCCCEEEE
Q ss_conf 467995999
Q 000626 1340 FDIEDELVS 1348 (1384)
Q Consensus 1340 f~~~d~l~s 1348 (1384)
+.-|++|.+
T Consensus 80 i~rG~vl~~ 88 (95)
T d1jnya1 80 IKRGDVVGH 88 (95)
T ss_dssp CCTTCEEEC
T ss_pred CCCCCEEEC
T ss_conf 289799988
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=95.60 E-value=0.034 Score=29.62 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=56.2
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC-CC--
Q ss_conf 555017999999818504899999920652798898716789606776530389888311001022100101012-46--
Q 000626 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG-- 1091 (1384)
Q Consensus 1015 ~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa-~g-- 1091 (1384)
.+|+++|-.|+...+.+..+.|.|.+|+|+.||.|++++++ ...+|+++++|++.+..| +|
T Consensus 5 ~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg----------------~~~~Vk~I~~~~~~~~~a~~G~~ 68 (92)
T d1zunb1 5 TDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG----------------KSSRVKSIVTFEGELEQAGPGQA 68 (92)
T ss_dssp SSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTC----------------CEEEEEEEEETTEEESEECTTCE
T ss_pred CCEEEEEEEEECCCCCCCEEEEEECCCEEECCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 77488679998159980589999860479669999988999----------------52887677985745688959999
Q ss_pred CEEECCCCCCCCCCCCEEEECCC
Q ss_conf 05501565323579944992998
Q 000626 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1092 vki~~~gL~~a~aG~~l~v~~~~ 1114 (1384)
+.+.+.+ ......+.+++.++
T Consensus 69 v~l~L~~--~~di~RGdvl~~~~ 89 (92)
T d1zunb1 69 VTLTMED--EIDISRGDLLVHAD 89 (92)
T ss_dssp EEEEESS--CCCCCTTCEEEETT
T ss_pred EEEEECC--CCCCCCCCEEECCC
T ss_conf 8999768--11449988996589
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.56 E-value=0.023 Score=30.96 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEE---------EEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 016899958989996306730997760-599132---------1257710112364323333798089998349960000
Q 000626 1264 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFI---------DIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQ 1333 (1384)
Q Consensus 1264 vf~~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i---------~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~ 1333 (1384)
.|+.-.+.|++=.|..|+|+.|..|.+ +.+..+ ...+|.||+.++.+|++|..|+-|||.+..-..
T Consensus 23 ~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l~~d~~---- 98 (118)
T d1s0ua1 23 EIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY---- 98 (118)
T ss_dssp CGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGG----
T ss_pred CCCCCCCCEEEEEECCCEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEECCCEEEEEECCCCC----
T ss_conf 6445555177755536478638889987787301266030012107998999789663788289979999646789----
Q ss_pred CCCCCCCCCCCEEE
Q ss_conf 01153246799599
Q 000626 1334 KMFGRHFDIEDELV 1347 (1384)
Q Consensus 1334 ~~~gr~f~~~d~l~ 1347 (1384)
+---++..|++|.
T Consensus 99 -i~r~Di~~G~Vl~ 111 (118)
T d1s0ua1 99 -LTKSDALTGSVVG 111 (118)
T ss_dssp -GTGGGTTTTCEEE
T ss_pred -CCHHHHEEEEEEE
T ss_conf -4578910014786
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.32 E-value=0.021 Score=31.20 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=23.0
Q ss_pred EEEEEEEECEEECCCCEEEC-CCC------EE---EEEEEECCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 89899963067309977605-991------32---12577101123643233337980899983
Q 000626 1272 VLGVDVVEGIAKVGTPICIP-QRD------FI---DIGRIASIENNHKPVDTAKKGQKAAIKIA 1325 (1384)
Q Consensus 1272 IaG~~V~~G~ik~g~~i~v~-~~~------~i---~~G~I~Slk~~k~~V~ea~kG~evgI~i~ 1325 (1384)
|++=.|..|+|+.|..|.+. .+. +. ...+|.||+.+++++++|..|+-|||.+.
T Consensus 31 VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l~ 94 (114)
T d2qn6a1 31 VIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTY 94 (114)
T ss_dssp EEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEES
T ss_pred EEEEEECCCCEEECCEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECCCEEEEEEC
T ss_conf 9998973561772878998678742337616410021699999989926178957998999963
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.05 Score=28.33 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=57.4
Q ss_pred HCCCCCCEEEEEEEEECCCCEE-EEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECH----HHH
Q ss_conf 1145550179999998185048-99999920652798898716789606776530389888311001022100----101
Q 000626 1012 TFRNELQCTVLEVKVIEGHGTT-IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHH----KQI 1086 (1384)
Q Consensus 1012 ~~~~~~~~~VlEvk~i~G~G~v-v~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~----k~V 1086 (1384)
++..|+.+.|....+....|.. ..++|++|+|+.|+.+.+++..+... .+.-+...+|..+|..+ .+|
T Consensus 30 d~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~-------~~~~~~~~~i~~i~~~~g~~~~~v 102 (138)
T d1n0ua1 30 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPG-------KKDDLFIKAIQRVVLMMGRFVEPI 102 (138)
T ss_dssp CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSS-------SCTTEEEEECCEEEEEETTEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEECCCCCCC-------CCCCCCEEEEEEEEEEECCCEEEE
T ss_conf 9999989999861248988889999988845581799999846886224-------455420004415677715760267
Q ss_pred CCC-CCCEEECCCCCCCCC-CCCE
Q ss_conf 012-460550156532357-9944
Q 000626 1087 KAA-QGIKITAQGLEHAIA-GTGL 1108 (1384)
Q Consensus 1087 ~aa-~gvki~~~gL~~a~a-G~~l 1108 (1384)
..+ +|..+++.||+..+. ++++
T Consensus 103 ~~a~AGdIvai~Gl~~~i~k~~Tl 126 (138)
T d1n0ua1 103 DDCPAGNIIGLVGIDQFLLKTGTL 126 (138)
T ss_dssp SEEETTCEEEEESCTTTCCSSEEE
T ss_pred EEEECCCEEEEECCCCCEECCCEE
T ss_conf 588327578973344524502363
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.25 E-value=0.035 Score=29.53 Aligned_cols=80 Identities=14% Similarity=0.290 Sum_probs=60.0
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCC-CCCCCCCCCCCCEEEEEEECCCCHH
Q ss_conf 3046661562016899958989996306730997760-5991321257710112-3643233337980899983499600
Q 000626 1254 PCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN-NHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~l~i~~~~vf~~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~-~k~~V~ea~kG~evgI~i~~~~~~~ 1331 (1384)
|-.|-|. .+|+ ..+.|+-.+|..|.|+.|..|.+ +.+ ...+|.+|+. +++.|++|..|+-|+|.|.+-.
T Consensus 9 PlR~pV~--d~~k-g~G~vv~G~v~sG~i~~gd~v~i~P~~---~~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~~~~--- 79 (95)
T d1r5ba1 9 PFIMPIA--SKYK-DLGTILEGKIEAGSIKKNSNVLVMPIN---QTLEVTAIYDEADEEISSSICGDQVRLRVRGDD--- 79 (95)
T ss_dssp CCEEECC--EEEE-SSSEEEEEECCBSEEETTEEEEEETTT---EEEEEEEEECTTCCEESEEETTCEEEEEEESCC---
T ss_pred CEEEEEE--EEEC-CCCEEEEEEEEECEEECCCEEEEECCC---CEEEEEEEEEECCCCCCCCCCCCEEEEEECCCC---
T ss_conf 9898998--8981-998799999936769679999994179---889999999974666567289987999982840---
Q ss_pred HHCCCCCCCCCCCEEEE
Q ss_conf 00011532467995999
Q 000626 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
.++.-|++|.+
T Consensus 80 ------~di~rG~vl~~ 90 (95)
T d1r5ba1 80 ------SDVQTGYVLTS 90 (95)
T ss_dssp ------TTCCTTCEEEC
T ss_pred ------CCCCCCCEEEC
T ss_conf ------06699779975
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.23 E-value=0.053 Score=28.11 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=42.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEECCCC
Q ss_conf 7978999199983116788710366661399861468997888999999871299369-999312443
Q 000626 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VviNKiDl~ 922 (1384)
.+.+.|||||++..... ...+..+|.+++|+...-.-.......+..+...+++++ +++|+++..
T Consensus 109 ~~D~viiD~~~~~~~~~--~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 109 STDILLLDAPAGLERSA--VIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174 (232)
T ss_dssp TCSEEEEECCSSSSHHH--HHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred CCCEEEECCCCCCCCHH--HHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 36435303322222025--7776542303220222211024566666654310111222223334434
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0084 Score=34.26 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 988999928999977999999839
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
-||++|+|..|+|||||+++|...
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 788999918999899999999999
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.10 E-value=0.075 Score=26.94 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=53.5
Q ss_pred CCEEEEEEEEECEEECCCCEEE-CCCCEE---------EEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCC
Q ss_conf 9958989996306730997760-599132---------125771011236432333379808999834996000001153
Q 000626 1269 DPIVLGVDVVEGIAKVGTPICI-PQRDFI---------DIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGR 1338 (1384)
Q Consensus 1269 ~p~IaG~~V~~G~ik~g~~i~v-~~~~~i---------~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr 1338 (1384)
.+.|++=.|..|+|++|..|.+ +.+... ...+|.||+.++++|++|..|+-|||.+.... .+-|
T Consensus 30 ~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~~~v~~A~~G~~Vgv~l~~d~------~i~r 103 (121)
T d1kk1a1 30 VGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP------YLTK 103 (121)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCG------GGTG
T ss_pred CCEEEEEEECCCEEECCCEEEECCCCCCCCCCCEECEEEEEEEEEEEECCCCCCEEECCCEEEEEECCCC------CCCH
T ss_conf 6227785462787840998998789720114501110200589899978977398968996999962467------8233
Q ss_pred -CCCCCCEEE
Q ss_conf -246799599
Q 000626 1339 -HFDIEDELV 1347 (1384)
Q Consensus 1339 -~f~~~d~l~ 1347 (1384)
++.-|++|.
T Consensus 104 ~Dv~rG~Vl~ 113 (121)
T d1kk1a1 104 GDLMAGNVVG 113 (121)
T ss_dssp GGTTTTCEEE
T ss_pred HHHCCEEEEE
T ss_conf 4733254788
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.043 Score=28.79 Aligned_cols=93 Identities=9% Similarity=-0.004 Sum_probs=53.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 16899889999289999779999998396345555751375203681033210000000134345779789991999831
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~ 869 (1384)
...++.+|.++|.+++|||||...|... .+...+..+.++.+ ..
T Consensus 10 ~~~~p~liil~G~pGsGKST~a~~l~~~-------------~~~~~i~~D~~~~~-----------------------~~ 53 (172)
T d1yj5a2 10 LSPNPEVVVAVGFPGAGKSTFIQEHLVS-------------AGYVHVNRDTLGSW-----------------------QR 53 (172)
T ss_dssp SCSSCCEEEEECCTTSSHHHHHHHHTGG-------------GTCEEEEHHHHCSH-----------------------HH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH-------------CCCEEECHHHHHHH-----------------------HH
T ss_conf 7999989999899999899999999976-------------59789760777788-----------------------89
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 167887103666613998614689978889999998712993699993124
Q 000626 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 920 (1384)
+.......+ .....+|+|.+.....+-..++.+++..+++++++.-.++
T Consensus 54 ~~~~~~~~l--~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~ 102 (172)
T d1yj5a2 54 CVSSCQAAL--RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 102 (172)
T ss_dssp HHHHHHHHH--HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHH--HCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 999999999--7799955517679999999999999855888799994899
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.88 E-value=0.019 Score=31.59 Aligned_cols=112 Identities=12% Similarity=0.005 Sum_probs=58.6
Q ss_pred CC-EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 98-89999289999779999998396345555751375203681033210000000134345779789991999831167
Q 000626 794 SP-ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 794 ~p-iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1384)
|| +|+++|.+++|||||..+|....-. .+.. ...+..+..+...... ......+.++......
T Consensus 1 ~p~li~l~GlpgsGKSTla~~L~~~l~~----~~~~----~~~~~~D~~r~~~~~~--------~~~~~~~~~~~~~~~~ 64 (213)
T d1bifa1 1 CPTLIVMVGLPARGKTYISKKLTRYLNF----IGVP----TREFNVGQYRRDMVKT--------YKSFEFFLPDNEEGLK 64 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCC----EEEEEHHHHHHHHHCS--------CCCGGGGCTTCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH----CCCC----CEEECCCCEEHHHCCC--------CCCCCCCCCCCCCCHH
T ss_conf 9989999899999999999999999974----6999----7397453011323045--------4332112222200014
Q ss_pred -----------HHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf -----------8871036666139986146899788899999987129936999931244
Q 000626 873 -----------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 873 -----------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl 921 (1384)
.....+....+.++|+|+..+...+-.....++...+.+++++.+.++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 65 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCH
T ss_conf 687888999999999998618988986067764899998999987549807998850367
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.68 E-value=0.072 Score=27.10 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred CCCEEEEEEEEECCCCEEEEE-EEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCC---CC
Q ss_conf 550179999998185048999-99920652798898716789606776530389888311001022100101012---46
Q 000626 1016 ELQCTVLEVKVIEGHGTTIDV-VLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1384)
Q Consensus 1016 ~~~~~VlEvk~i~G~G~vv~~-iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa---~g 1091 (1384)
|....++.-+...+.++.+.+ .|..|+|+.|+.|++.+.+ ..+ +|+++..+++.+..| +.
T Consensus 4 P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~--~~g--------------~VksIq~~~~~v~~A~~G~~ 67 (128)
T d1g7sa2 4 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGE--TVG--------------TVESMQDKGENLKSASRGQK 67 (128)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSC--EEE--------------EEEEEEETTEEESEEETTCC
T ss_pred EEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCCC--CEE--------------EEEEEEECCCCCCEECCCCE
T ss_conf 17999768767527998599999935263089979988999--358--------------99999998821117828998
Q ss_pred CEEECCCCC---CCCCCCCEEEECCCCCHHH
Q ss_conf 055015653---2357994499299861899
Q 000626 1092 IKITAQGLE---HAIAGTGLYVVGPDDDLED 1119 (1384)
Q Consensus 1092 vki~~~gL~---~a~aG~~l~v~~~~~~~~~ 1119 (1384)
+.|.+.|.. +...|+.||+--+...+..
T Consensus 68 Vai~I~g~~~gr~i~~gD~L~s~i~~~~i~~ 98 (128)
T d1g7sa2 68 VAMAIKDAVYGKTIHEGDTLYVDIPENHYHI 98 (128)
T ss_dssp EEEEEETCCBTTTBCTTCEEEECCCHHHHHT
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCHHHHHH
T ss_conf 9999768533778998889999699899999
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.63 E-value=0.083 Score=26.62 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHH
Q ss_conf 14555017999999818504--------8999999206527988987167896067765303898883110010221001
Q 000626 1013 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1384)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~--------vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k 1084 (1384)
+..++.++|..+|.+.+.|+ |++|.|.+|+|+.||.|.+.+.... .+..... ..| ...+|+++++|++
T Consensus 3 ~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~--~~~~~~~-~~~-~~t~V~sI~~~~~ 78 (114)
T d2qn6a1 3 LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRV--EKQGKVS-YEP-IFTKISSIRFGDE 78 (114)
T ss_dssp TTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEE--EETTEEE-EEE-EEEEEEEEEETTE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEECCCCCC--CCCCEEE-EEE-CCEEEEEEEECCC
T ss_conf 88996188862111468999720265449998973561772878998678742--3376164-100-2169999998992
Q ss_pred HHCCCC-C--CEEECC
Q ss_conf 010124-6--055015
Q 000626 1085 QIKAAQ-G--IKITAQ 1097 (1384)
Q Consensus 1085 ~V~aa~-g--vki~~~ 1097 (1384)
.+..|. | +.|.+.
T Consensus 79 ~v~~A~aG~~V~i~l~ 94 (114)
T d2qn6a1 79 EFKEAKPGGLVAIGTY 94 (114)
T ss_dssp EESEECSSSCEEEEES
T ss_pred CCCEEECCCEEEEEEC
T ss_conf 6178957998999963
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.38 E-value=0.015 Score=32.42 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=58.9
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCC
Q ss_conf 62016-899958989996306730997760-5991321257710112364323333798089998349960000011532
Q 000626 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1339 (1384)
Q Consensus 1262 ~~vf~-~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~ 1339 (1384)
+.+|. +..+.|+-=+|..|+|+.|..|.+ +.+ ...+|.||+.+++++++|..|+-|||.|.+.+. -+
T Consensus 12 ~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~--------~~ 80 (92)
T d1wb1a1 12 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN---MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDA--------KQ 80 (92)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC---CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCS--------SC
T ss_pred EEEEEECCCEEEEEEEEEECEEECCCEEEEECCC---CCEEEEEEEECCCEEEEECCCCEEEEEECCCCH--------HH
T ss_conf 9999828957998769810658169769972358---706777666858142480899897799808888--------98
Q ss_pred CCCCCEEEE
Q ss_conf 467995999
Q 000626 1340 FDIEDELVS 1348 (1384)
Q Consensus 1340 f~~~d~l~s 1348 (1384)
+.-|++|.+
T Consensus 81 i~rG~vl~~ 89 (92)
T d1wb1a1 81 IYRGCILTS 89 (92)
T ss_dssp CCSSCBCCC
T ss_pred CCCCCEEEC
T ss_conf 488699968
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.17 E-value=0.15 Score=24.69 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCC-CCCCEEEEECCCCCCH
Q ss_conf 899889999289999779999998396345555751375203681033210000000134345-7797899919998311
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL-KVPGLLVIDTPGHESF 870 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~-~~~~i~iIDTPGHe~F 870 (1384)
-++ |.|.|.+++|||||+++|+.. +.. ...-+|+.- +.+. .+ ....+.-+.+.++..|
T Consensus 166 ~~n--ili~G~tgSGKTT~l~al~~~-i~~-~~rivtiEd-----~~El------------~l~~~~~~~~~~~~~~~~~ 224 (323)
T d1g6oa_ 166 GKN--VIVCGGTGSGKTTYIKSIMEF-IPK-EERIISIED-----TEEI------------VFKHHKNYTQLFFGGNITS 224 (323)
T ss_dssp TCC--EEEEESTTSSHHHHHHHHGGG-SCT-TCCEEEEES-----SCCC------------CCSSCSSEEEEECBTTBCH
T ss_pred CCC--EEEEEECCCCCHHHHHHHHHH-CCC-CCCEEECCC-----HHHH------------HCCCCCCCCEECCCCCHHH
T ss_conf 788--899940356625789998653-014-562331132-----2655------------1111245410014654249
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 67887103666613998614689978889999998712993
Q 000626 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP 911 (1384)
..+....++. +.-.+||.=..|- .+...++.+ ..+.+
T Consensus 225 ~~ll~~~lR~-~pd~iivgEiR~~--ea~~~l~a~-~tGh~ 261 (323)
T d1g6oa_ 225 ADCLKSCLRM-RPDRIILGELRSS--EAYDFYNVL-CSGHK 261 (323)
T ss_dssp HHHHHHHTTS-CCSEEEESCCCST--HHHHHHHHH-HTTCS
T ss_pred HHHHHHHHCC-CCCCCCCCCCCCH--HHHHHHHHH-HHCCC
T ss_conf 9999997434-9985457866746--599999999-81698
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=92.76 E-value=0.2 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999977999999839
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.|+|+|.+|+|||||+..|.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 8999989993899999999814
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.53 E-value=0.091 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999977999999839
Q 000626 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+++|+|..++|||||+.+|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999809999899999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.27 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
|+ |.|.|.+|+|||||+..|...
T Consensus 2 k~--v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RH--VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CC--EEEESCCSSCHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 69--999889997199999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.16 E-value=0.11 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899997799999983
Q 000626 796 ICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+|+|+|.+++|||||...|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=89.90 E-value=0.38 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999289999779999998
Q 000626 797 CCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~ 815 (1384)
|+|.|-.|+||||+.-.|-
T Consensus 4 Iai~gKGGvGKTT~a~nLA 22 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998998577999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.64 E-value=0.39 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=22.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1689988999928999977999999839
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.....+.+++.|++|+||||++..|...
T Consensus 48 ~~~~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 48 GSGVFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp STTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7888744999879999888999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=88.70 E-value=0.21 Score=23.58 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 68998899992899997799999983
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.++..+|+|+|++|+||||+...|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99988899982899988999999999
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=88.38 E-value=0.47 Score=20.80 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=58.3
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCC-CCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 46661562016899958989996306730997760-59913212577101123-64323333798089998349960000
Q 000626 1256 VLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENN-HKPVDTAKKGQKAAIKIAGSNSEEQQ 1333 (1384)
Q Consensus 1256 ~l~i~~~~vf~~~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~-k~~V~ea~kG~evgI~i~~~~~~~~~ 1333 (1384)
...||. .++..-.+.|+=++|.+|+|+.|..|.+ ..+....+++|-.+.-. +.+|+++..|+=|+|. +.
T Consensus 28 ~a~Vfk-~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~--gl------ 98 (121)
T d2bv3a1 28 AALAFK-IMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GL------ 98 (121)
T ss_dssp EEEEEE-EEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTCEEEEE--SC------
T ss_pred EEEEEE-EEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCEEEEECCCCCEEEE--CC------
T ss_conf 899974-330678886775121125568999999814997799724355203663382086045436786--65------
Q ss_pred CCCCCCCCCCCEEEE
Q ss_conf 011532467995999
Q 000626 1334 KMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1334 ~~~gr~f~~~d~l~s 1348 (1384)
.++..||+|.+
T Consensus 99 ----~~~~~GDTl~~ 109 (121)
T d2bv3a1 99 ----KETITGDTLVG 109 (121)
T ss_dssp ----SSCCTTCEEEE
T ss_pred ----CCCEECCEEEC
T ss_conf ----88602777746
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.15 E-value=0.2 Score=23.62 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 68998899992899997799999983
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
..++++|+|+|.+++||||+...|..
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88994899989999988999999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.02 E-value=0.18 Score=24.07 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.=+++|+|+.|+|||||+..|.+-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCCCHHHHHCCCC
T ss_conf 49979999889999821655750688
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.64 E-value=0.22 Score=23.38 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 689988999928999977999999839
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
-.+.=+|+|+|+.|+|||||+..|.+-
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 859999999989998299999999579
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=87.24 E-value=0.19 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9889999289999779999998
Q 000626 794 SPICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~ 815 (1384)
-|+|+|+|.+|+||||+...|.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8979898999999899999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.06 E-value=0.19 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 001689988999928999977999999839
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
...+.|+.+|+|-|..++|||||+..|...
T Consensus 3 ~~~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 3 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 567998619998899998889999999987
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.25 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+.=+|+|+|+.|+|||||+..|.+-
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999999999899999999735
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=86.29 E-value=0.29 Score=22.38 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99889999289999779999998396
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..=+++|+|+.|+|||||+..|.+-.
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99899999999980999999996487
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=0.61 Score=19.93 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899889999289999779999998396
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.+.=+++|+|+.|+|||||+..|.+-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999899982999999996587
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.15 E-value=0.3 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899889999289999779999998396
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.+.=+++|+|+.|+|||||+..|.+-.
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899999999982999999997589
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.93 E-value=0.31 Score=22.19 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 889999289999779999998396
Q 000626 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
-+++|+|+.|+|||||+..|.+-.
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999799980999999997399
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=85.57 E-value=0.29 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+.=+|+|+|+.|+|||||+..|.+-
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999999999799999999996
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.55 E-value=0.24 Score=23.10 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+.=+++|+|+-|+|||||+..|.+-
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999997199999999662
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=85.53 E-value=0.28 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.=+++|+|+.++|||||+..|.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 59999999999998599999998621
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.35 E-value=0.3 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.=+|+|+|+.++|||||+..|.+-
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 49989999999998499999998614
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=85.11 E-value=0.31 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.=+++|+|+.|+|||||+..|.+-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 69979999899989888999987588
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=85.10 E-value=0.32 Score=22.15 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899889999289999779999998396
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.+.=+++|+|+-++|||||+..|.+-.
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899799999999985999999996788
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.39 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
...|+|+|+|.+++||||+...|..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9972899989999998999999999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=84.76 E-value=0.33 Score=21.99 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.=+++|+|+.|+|||||+..|.+-
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69979999989998299999999747
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.27 E-value=0.74 Score=19.29 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99992899997799999983
Q 000626 797 CCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~ 816 (1384)
|.++|.+|+|||+|..+|..
T Consensus 31 vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988998529999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=83.78 E-value=0.25 Score=22.99 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899889999289999779999998396
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
...=+++|+|+.|+|||||+..|.+-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799899999899982999999996476
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.43 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98899992899997799999983
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+.+|+|.|.+++|||||...|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989997879999999999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=83.59 E-value=0.28 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+-=+++|+|+-|+|||||+..|.+-
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 48989999989998099999999488
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.53 E-value=0.41 Score=21.31 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89988999928999977999999839
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+-=+++|+|+-++|||||+..|.+.
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89979999999998499999999779
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.45 E-value=0.41 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98899992899997799999983
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+|+|+|+|.+++||||+...|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 93999979999998999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.19 E-value=0.49 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9889999289999779999998
Q 000626 794 SPICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~ 815 (1384)
.|||+|.|++++||||+-..|.
T Consensus 3 ~piI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9889977999889899999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.17 E-value=0.4 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98899992899997799999983
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+++|+|+|.+|+||||+...|..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 72999988999998999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.17 E-value=0.25 Score=22.93 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+.|||+|.|..++|||||...|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9888999989997809999999999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=82.88 E-value=0.44 Score=21.03 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99889999289999779999998396
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..=+++|+|.-|+|||||+..|.+-.
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89799999999999999999996698
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=82.81 E-value=0.84 Score=18.87 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+.-++.|.|.+++|||+|+-.|...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9849999918999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=82.81 E-value=0.34 Score=21.87 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+.+-.|+|+|.+++|||||..+|..
T Consensus 5 ~~~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 5 FFAKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp GTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 6632899989999989999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.72 E-value=0.52 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=20.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
+|.| |+|+|..++|||||+.+|+.
T Consensus 2 m~k~-ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 2 MRKT-LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHH
T ss_conf 9771-99999899999999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.68 E-value=0.53 Score=20.44 Aligned_cols=23 Identities=35% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
|+ |+|+|..++|||||+.+|+..
T Consensus 2 rp--Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 2 RP--IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CC--EEEECCTTSSHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 76--999899999989999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.47 E-value=0.58 Score=20.12 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 998899992899997799999983
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+.+|+|.|.+++|||||...|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 988999789887899999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.01 E-value=0.6 Score=19.98 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 889999289999779999998
Q 000626 795 PICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~ 815 (1384)
-+|+|.|.+|+||||++..|.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 889998999989899999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.29 E-value=0.64 Score=19.81 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999928999977999999839
Q 000626 797 CCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t 817 (1384)
|+|+|.+++|||||...|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=81.05 E-value=0.97 Score=18.41 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999289999779999998
Q 000626 797 CCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~ 815 (1384)
|+|-|-.|+||||+.-.|-
T Consensus 5 IaisgKGGVGKTT~a~NLA 23 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999877999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.95 E-value=0.73 Score=19.37 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
-|...|+|+|.+++||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7621699988999987999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=0.68 Score=19.60 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 16899889999289999779999998
Q 000626 790 ENLRSPICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~ 815 (1384)
...++.+|+|.|.+++|||||...|.
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 78998899996899998768999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=80.85 E-value=0.29 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999928999977999999839
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+.=+|+|+|+.++|||||+..|.+-
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9989999889998099999999712
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.72 E-value=0.7 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8998899992899997799999983
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.++++|.|+|.+++||||+...|..
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6782899989999987999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=80.02 E-value=0.73 Score=19.35 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8899992899997799999983
Q 000626 795 PICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+|+|+|.+++||||+...|..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0899989999998999999999
|