Citrus Sinensis ID: 000641

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------138

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGITLGKRY

cccccccccccccHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccc

meeetqvgsevpvmkavedidpiketngglpqvgkegkkeeeENALDAEFIKVEKEAldvkevshmaepaaaeeddkpsvvdrssssssRELLEANEKVKELEIELERAATALKNAEIEnarlqddvLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHkqsgshaesESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRnsdenfcktDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVelkssdserEVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKersaededranmshqrsIELEDLFQTshsklegtgkRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANnkannsssENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRsghferesgglvetnlkLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEqrgadsqkdSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLkqggedtpsevkdaaeiksrdigsvistpskrksKKLEAAAQtsstreiptaradaspvmtFKFIIGVALVSVIIGITLGKRY

meeetqvgsevpvmkavedidpiketngglpqvgkegkkEEEENALDAEFIKVEKEALDVKEVSHMAepaaaeeddkpsvvdrssssssrelleaNEKVKELEIELERAATAlknaeienarlqddvliTKEKLEesgkkceeleigQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKqsgshaesesqRALEFERLLETANVSAKEVEGQMASLQEELKglnekisekeKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETgaaaatasqrNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLvelkssdserevREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIlnqsntrsseleeelritkersaededranmshqrsieledlfqtshsklegtgkrvNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNaaadekrklqdtsngynEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEAnnkannsssenELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRftqrdieannlNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQtrsghferesgglvetnLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQfkeevenvkvsaagkeaelnsKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAeqrgadsqkdSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAklkqggedtpsevkdaaeiksrdigsvistpskrkskkleaaaqtsstreiptaradaspVMTFKFIIGVALVSVIIGITLGKRY

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVgkegkkeeeeNALDAEFIKVEKEALDVKEVSHMaepaaaeeDDKPSVVDRssssssRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNekisekekveeelkRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDsllsqalannaelelklksleeQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSveleqqlnlvelKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYneklaeaenllellrndlnMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQvveannkannsssenellvetnnQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAetrkfeleetllklknlestVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVaeleqklqqaqaklkqggeDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGITLGKRY

*************************************************************************************************************************************************************************************************************************************************************************************************************KLQLLDLEQRF***EALITNLTQELDL********************************************************************************************************************************************************************************************************************************************************************************************************************LELLLEAEKYR*******************************************************************************************************************************************************************************************************QLAEAAGKYALLKEELDSYFIKVTS***********************************************************************************************LHEAIQRFT***********************************************************************LVETNLKLTEDLALYETKLSDLQAKLSATIV******************************************************************************************FALETRIKELEELLVNVETQF*********************************ALYEQVIQLQRELQIA******************************************************************************************************************PVMTFKFIIGVALVSVIIGITLG***

**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IIGVALVSVIIGITLGKRY

**********VPVMKAVEDIDPIKETNGGLP************NALDAEFIKVEKEALDVKEVSHM*******************************KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFE*****************LEFERLLETANVSAKEVEGQMASLQEELKGLNEKISE************TEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQ*************RNLELEDIIRASNE********LRELEPRFIAAEQRSVELEQQLNLVELKS**************SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS************ITKERS**********HQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLE**************DKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVL**************ESLMRESEMKLQDALANIT**********EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA*************LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE*********AETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI*******************SSLEELGAKNKEAALLQNKVAELEQKL*******************DAAEIKSRDIGSVIS************************ARADASPVMTFKFIIGVALVSVIIGITLGKRY

*****Q*GSEVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVIST***R************************SPVMTFKFIIGVALVSVIIGITLGKRY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii

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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1377
224086600		1259	predicted protein [Populus trichocarpa]	0.911	0.996	0.590	0.0
147862641		1430	hypothetical protein VITISV_033286 [Viti	0.977	0.941	0.569	0.0
356544363		1321	PREDICTED: uncharacterized protein LOC10	0.954	0.995	0.542	0.0
356540952		1304	PREDICTED: uncharacterized protein LOC10	0.942	0.995	0.541	0.0
357474015		1322	hypothetical protein MTR_4g076030 [Medic	0.954	0.994	0.534	0.0
240254562		1333	uncharacterized protein [Arabidopsis tha	0.964	0.996	0.541	0.0
449460006		1582	PREDICTED: uncharacterized protein LOC10	0.790	0.687	0.579	0.0
449502175		1085	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.784	0.995	0.581	0.0
25408221		1269	probable myosin heavy chain [imported] -	0.917	0.996	0.508	0.0
414883542		768	TPA: hypothetical protein ZEAMMB73_30987	0.556	0.997	0.648	0.0

>gi\|224086600\|ref\|XP_002307915.1\| predicted protein [Populus trichocarpa] gi\|222853891\|gb\|EEE91438.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1368 bits (3540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1381 (59%), Positives = 1007/1381 (72%), Gaps = 126/1381 (9%)

Query: 1    MEEETQVGSEVPVMKAVEDI-DPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALD 59
            ME ETQV SEVPV+K   D+ D IK TNG L  V KEG+KEE+E   D EFIKVEKE+LD
Sbjct: 1    MEGETQVSSEVPVVKGDPDVADLIKLTNGDLTHVEKEGRKEEDET--DGEFIKVEKESLD 58

Query: 60   VKEV-SHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEI 118
            VK+  SH AE  +A E DKPSVV+RS S S+RELLEA EK+KELE+ELER + ALK++E 
Sbjct: 59   VKDGGSHTAEVKSAGEADKPSVVERSLSGSTRELLEAQEKLKELELELERVSAALKHSES 118

Query: 119  ENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA 178
            EN  L+DDVL+  EKL+ESGKK  ELEI  KK QEQI+EA EK++++L+ ++EALQA+E 
Sbjct: 119  ENTLLKDDVLLANEKLDESGKKYGELEISHKKLQEQIIEAEEKFSAQLHTLQEALQAKET 178

Query: 179  KRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQR 238
            K KEL EVKE+FDG++LE+E SR ++QELEH+L+ S  EA+KFEELHK+SG HAESE+QR
Sbjct: 179  KHKELVEVKESFDGITLELENSRKKMQELEHELEVSSGEAKKFEELHKESGLHAESETQR 238

Query: 239  ALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEEL 298
            ALEFERLLE A +SAKE+E QMA+LQEE+KGL EK++   KVE  LK +  E+SA  EEL
Sbjct: 239  ALEFERLLEAAKLSAKEMENQMATLQEEVKGLYEKVAGNLKVEGALKSTTAELSAANEEL 298

Query: 299  GLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKV 358
              SK Q LD+EQR SSKEALI  LTQELDL KASESQ KE+  AL+NLL   KE+L AKV
Sbjct: 299  AASKSQQLDIEQRLSSKEALIGELTQELDLKKASESQVKEDFLALENLLTATKEDLQAKV 358

Query: 359  SELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418
            SE+E +KL+LQEE+N RESVEA LKT EAQV+ V EEL KV KEKEALEAAMADLT N A
Sbjct: 359  SEMEGMKLRLQEEINTRESVEAGLKTHEAQVATVQEELAKVLKEKEALEAAMADLTSNAA 418

Query: 419  RMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478
            +MKELC ELEEKL+ SDENFCK DSLLSQAL+N+AELE KLK LE+ H+E+GAAAATASQ
Sbjct: 419  QMKELCGELEEKLKTSDENFCKADSLLSQALSNSAELEQKLKFLEDLHSESGAAAATASQ 478

Query: 479  RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVRE 538
            +NLELED+IRASNEAAEEAKSQLRELE RF+AAE+++VELEQQLNLVELKSSD+ER+VRE
Sbjct: 479  KNLELEDLIRASNEAAEEAKSQLRELEIRFVAAEKKNVELEQQLNLVELKSSDAERQVRE 538

Query: 539  FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598
            FSEK+S+LST LKEVE EK QL  QM +Y++KI+ LE  LNQS++R+SELEEEL+I KE+
Sbjct: 539  FSEKISELSTTLKEVEGEKNQLSAQMEEYQEKISHLESSLNQSSSRNSELEEELKIAKEK 598

Query: 599  SAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKL 658
             A  EDRA M +QRS+ELEDLFQTSHS+LE  GK+ +E  LLLEAEKYRI+ELEEQ S  
Sbjct: 599  CAGHEDRAKMHYQRSLELEDLFQTSHSRLEDAGKKASEFVLLLEAEKYRIKELEEQNSAF 658

Query: 659  EKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEK 718
            EKKC +AEA S++Y DK+ ELASE+EA+QA++SSLEV+LQMA +KE ELTE LN   DEK
Sbjct: 659  EKKCVDAEADSRKYLDKISELASEIEAYQAKSSSLEVSLQMAGEKETELTELLNLVTDEK 718

Query: 719  RKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAE 778
            ++L++ S+  NEKL+EAENL+ +LRN+L + QE+LESIE DLKAAGL+E+D+M KLKSAE
Sbjct: 719  KRLEEASSSSNEKLSEAENLVGVLRNELIVMQEKLESIENDLKAAGLKESDIMVKLKSAE 778

Query: 779  EQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLE 838
            EQLEQQ ++LE+ATSR SELESLHE+L R+SE+KLQ+AL N T+RDSEAKS  EKL  LE
Sbjct: 779  EQLEQQEKLLEEATSRKSELESLHEALTRDSEIKLQEALTNFTNRDSEAKSLFEKLNTLE 838

Query: 839  GQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE 898
             QVK Y+EQ+ E  G+ ALLKEELD   +K+ +LE++NEEL+ Q+VEA  K +NS SENE
Sbjct: 839  DQVKEYKEQITEVTGRSALLKEELDLCLLKMVALETSNEELKSQIVEAETKFSNSFSENE 898

Query: 899  LLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEA 958
            LLVETNNQLKSK+ ELQELL+SA                                    +
Sbjct: 899  LLVETNNQLKSKIDELQELLNSA------------------------------------S 922

Query: 959  RVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEE 1018
            R+  AE QL EAIQ  T +D+E  +LNEK+  LEGQ+K YEEQA EAST++E+RK ELEE
Sbjct: 923  RMMHAETQLQEAIQSLTLKDVETRDLNEKLKALEGQVKLYEEQAHEASTISESRKGELEE 982

Query: 1019 TLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVE 1078
            TLLK+ +LE+ +EEL+T+SGHFE+ESG L E NLKLT++LA YE+KL DL+AKLS  + E
Sbjct: 983  TLLKVTHLETVLEELKTKSGHFEKESGVLAEDNLKLTQELASYESKLRDLEAKLSTILSE 1042

Query: 1079 KDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQ 1138
            KD T+EQLH SKKA EDL Q+LT E Q LQ+QI ++                        
Sbjct: 1043 KDGTIEQLHISKKAFEDLRQQLTDEGQKLQSQIESL------------------------ 1078

Query: 1139 LEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVS 1198
                                  KA+ AEK AL+T ++ELE+ L     + KE++E     
Sbjct: 1079 ----------------------KAEVAEKSALQTSLEELEKQLTTAAVELKEQLE----- 1111

Query: 1199 AAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAA 1258
               KEA L     D   + K+ + L  QV +L+++LQ A   + E+             +
Sbjct: 1112 ---KEAALKKSFADLEAKNKEVSHLENQVKELEQKLQEADAKLLEK------------VS 1156

Query: 1259 LKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGS 1318
            L   L            ++  +++LE K+   + KL+   E      +   EIKSRDI +
Sbjct: 1157 LYLPL-----------FMEFSLSKLE-KISHEEVKLEINAE------QKGVEIKSRDISA 1198

Query: 1319 VISTPSKRKS-KKLE-AAAQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGITLGKR 1376
             ISTP+KRKS KKLE A+AQ SS+ E  T  AD SP M FKFI+GVALVS+IIG+ LGKR
Sbjct: 1199 AISTPTKRKSKKKLEAASAQASSSSETHTQTADVSPAMNFKFILGVALVSIIIGVILGKR 1258

Query: 1377 Y 1377
            Y
Sbjct: 1259 Y 1259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147862641\|emb\|CAN81488.1\| hypothetical protein VITISV_033286 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356544363\|ref\|XP_003540622.1\| PREDICTED: uncharacterized protein LOC100792883 [Glycine max]	Back alignment and taxonomy information

>gi\|356540952\|ref\|XP_003538948.1\| PREDICTED: uncharacterized protein LOC100801514 [Glycine max]	Back alignment and taxonomy information

>gi\|357474015\|ref\|XP_003607292.1\| hypothetical protein MTR_4g076030 [Medicago truncatula] gi\|355508347\|gb\|AES89489.1\| hypothetical protein MTR_4g076030 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|240254562\|ref\|NP_565741.4\| uncharacterized protein [Arabidopsis thaliana] gi\|330253560\|gb\|AEC08654.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449460006\|ref\|XP_004147737.1\| PREDICTED: uncharacterized protein LOC101211772 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449502175\|ref\|XP_004161564.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225995, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|25408221\|pir\|\|F84730 probable myosin heavy chain [imported] - Arabidopsis thaliana	Back alignment and taxonomy information

>gi\|414883542\|tpg\|DAA59556.1\| TPA: hypothetical protein ZEAMMB73_309877 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1377
TAIR\|locus:2045412		1333	AT2G32240 "AT2G32240" [Arabido	0.902	0.932	0.416	2.5e-232
TAIR\|locus:2207230		790	AT1G05320 "AT1G05320" [Arabido	0.534	0.931	0.261	3e-39
TAIR\|locus:2152985		1586	CIP1 "COP1-interactive protein	0.843	0.732	0.201	2.5e-37
DICTYBASE\|DDB_G0286355		2116	mhcA "myosin heavy chain" [Dic	0.852	0.554	0.207	2.8e-36
DICTYBASE\|DDB_G0290503		1492	DDB_G0290503 [Dictyostelium di	0.833	0.769	0.200	4.5e-36
FB\|FBgn0020503		1690	CLIP-190 "Cytoplasmic linker p	0.856	0.698	0.208	5.5e-36
UNIPROTKB\|J9P2D7		1364	EEA1 "Uncharacterized protein"	0.817	0.825	0.213	8.1e-36
UNIPROTKB\|F1PZD3		1411	EEA1 "Uncharacterized protein"	0.817	0.798	0.213	8.6e-36
ZFIN\|ZDB-GENE-041111-270		1398	eea1 "early endosome antigen 1	0.814	0.802	0.2	2.3e-35
UNIPROTKB\|F1NI68		2142	GOLGA4 "Uncharacterized protei	0.877	0.564	0.206	4e-34

TAIR\|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2241 (793.9 bits), Expect = 2.5e-232, P = 2.5e-232
 Identities = 527/1264 (41%), Positives = 750/1264 (59%)

Query:     1 MEEETQV-GSEVPVMKAVEDIDPIKETNGGLPQVXXXXXXXXXXNALDAEFIKVEKEALD 59
             MEE TQV  SEVPV+K   D+D +K  +  +  V             D EFIKVEKEA D
Sbjct:     1 MEEATQVTSSEVPVVKG--DVDDLKTADISVKAVNGEVPKEEKEEE-DGEFIKVEKEAFD 57

Query:    60 VKEVSHMXXXXXXXXDDKPSVVDRXXXXXXRELLEANEKVKELEIELERAATALKNAEIE 119
              K+ +          +++  V++R      REL E+ EK KELE+ELER A  LK  E E
Sbjct:    58 AKDDAEKADHVPV--EEQKEVIERSSSGSQRELHESQEKAKELELELERVAGELKRYESE 115

Query:   120 NARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAK 179
             N  L+D++L  KEKLEE+ KK  +LE+ QKK QE+IVE  E+++S+L ++++ALQ+ +AK
Sbjct:   116 NTHLKDELLSAKEKLEETEKKHGDLEVVQKKQQEKIVEGEERHSSQLKSLEDALQSHDAK 175

Query:   180 RKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRA 239
              KEL EVKEAFD L +E+E SR +L ELE  L+ S +EA+KFEELHKQS SHA+SESQ+A
Sbjct:   176 DKELTEVKEAFDALGIELESSRKKLIELEEGLKRSAEEAQKFEELHKQSASHADSESQKA 235

Query:   240 LEFERLLETANVSAKEVEGQMASLQEELKGLNXXXXXXXXXXXXXXRSNTEISAIQEELG 299
             LEF  LL++   SAKE+E +MASLQ+E+K LN               S  E++A+QEEL 
Sbjct:   236 LEFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENEKVEAALKSSAGELAAVQEELA 295

Query:   300 LSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVS 359
             LSK +LL+ EQ+ SS EALI  LTQEL+  KASES+ KEE+S L +L A  K  L AK+S
Sbjct:   296 LSKSRLLETEQKVSSTEALIDELTQELEQKKASESRFKEELSVLQDLDAQTK-GLQAKLS 354

Query:   360 ELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIAR 419
             E E I  KL EE+  +E +E++ K QE ++   NE+L +V KEKEALEA +A++T N+A 
Sbjct:   355 EQEGINSKLAEELKEKELLESLSKDQEEKLRTANEKLAEVLKEKEALEANVAEVTSNVAT 414

Query:   420 MKELCSELEEKLRNSDENFCKTDXXXXXXXXXXXXXXXXXXXXXXQHNETGAAAATASQR 479
             + E+C+ELEEKL+ SDENF KTD                       H+E G+AAA A+Q+
Sbjct:   415 VTEVCNELEEKLKTSDENFSKTDALLSQALSNNSELEQKLKSLEELHSEAGSAAAAATQK 474

Query:   480 NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSXXXXXXXXXXXXKSSDSEREVREF 539
             NLELED++R+S++AAEEAKSQ++ELE +F AAEQ++            KSSD+ERE++E 
Sbjct:   475 NLELEDVVRSSSQAAEEAKSQIKELETKFTAAEQKNAELEQQLNLLQLKSSDAERELKEL 534

Query:   540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERS 599
             SEK S+L TA++  EEEKKQ   QM +YK K ++LEL L QS+ R+SELEE+LRI  ++ 
Sbjct:   535 SEKSSELQTAIEVAEEEKKQATTQMQEYKQKASELELSLTQSSARNSELEEDLRIALQKG 594

Query:   600 AEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLE 659
             AE EDRAN +HQRSIELE L Q+S SK E    R+ +LELLL+ EKYRIQELEEQ+S LE
Sbjct:   595 AEHEDRANTTHQRSIELEGLCQSSQSKHEDAEGRLKDLELLLQTEKYRIQELEEQVSSLE 654

Query:   660 KKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKR 719
             KK  E EA SK Y  +V EL S LEAFQ ++SSLE AL +A + E+ELTE+LNA   EK+
Sbjct:   655 KKHGETEADSKGYLGQVAELQSTLEAFQVKSSSLEAALNIATENEKELTENLNAVTSEKK 714

Query:   720 KLQDTSNGYXXXXXXXXXXXXXXXXXXXMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779
             KL+ T + Y                   +TQ +LESIE DLKAAGL+E++VMEKLKSAEE
Sbjct:   715 KLEATVDEYSVKISESENLLESIRNELNVTQGKLESIENDLKAAGLQESEVMEKLKSAEE 774

Query:   780 QLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEG 839
              LEQ+ R +++AT++  ELE+LH+SL  +SE +LQ A+   TSRDSEA S +EKL++LEG
Sbjct:   775 SLEQKGREIDEATTKRMELEALHQSLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEG 834

Query:   840 QVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQXXXXXXXXXXXXXXXXX 899
             ++K YEEQLAEA+GK + LKE+L+    ++ + ES NE+L+++                 
Sbjct:   835 KIKSYEEQLAEASGKSSSLKEKLEQTLGRLAAAESVNEKLKQEFDQAQEKSLQSSSESEL 894

Query:   900 XXXXXXQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEAR 959
                   QLK K+ EL+ L+ S   EKE   ++L   +    +   + S  +E     E +
Sbjct:   895 LAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQKETESSDLVEKLKTHENQ 954

Query:   960 VKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAXXXXXXXXXX 1019
             ++E +   HEA      R +E  +   K+  LE  I+    + +     +          
Sbjct:   955 IEEYKKLAHEASGVADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGDLAEVNLKL 1014

Query:  1020 XXXXXXXXXXVEELQTRSGHFERE---SGGLVETNLKLTEDLALYETKLSD-LQAKLSAT 1075
                         ELQT+    E E   +   +E +    EDL    T   + LQ+++S+ 
Sbjct:  1015 NLELANHGSEANELQTKLSALEAEKEQTANELEASKTTIEDLTKQLTSEGEKLQSQISSH 1074

Query:  1076 IVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLN------ETYQNAK 1129
               E ++      ++K+ ++ +  KL  ++    ++   ++ E   L          ++  
Sbjct:  1075 TEENNQVNAMFQSTKEELQSVIAKLEEQLTVESSKADTLVSEIEKLRAVAAEKSVLESHF 1134

Query:  1130 NELQSVISQLEAQLNEKKATEETFKSEIESL--KAQAAEKFALETRIKELEELLVNVETQ 1187
              EL+  +S+++AQL E      T   ++  L  K Q  E  A E  +   + L +  E Q
Sbjct:  1135 EELEKTLSEVKAQLKENVENAATASVKVAELTSKLQEHEHIAGERDVLNEQVLQLQKELQ 1194

Query:  1188 FKEE-VENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQREL-QIAQTAIAEQR 1245
               +  ++  K + + K++EL S L+    E++ +     +   + ++L Q  Q A A+ +
Sbjct:  1195 AAQSSIDEQKQAHSQKQSELESALKKSQEEIEAKKKAVTEFESMVKDLEQKVQLADAKTK 1254

Query:  1246 GADS 1249
               ++
Sbjct:  1255 ETEA 1258

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2207230 AT1G05320 "AT1G05320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0020503 CLIP-190 "Cytoplasmic linker protein 190" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-270 eea1 "early endosome antigen 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VI1490	hypothetical protein (1259 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1377
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-26
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-24
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-21
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-19
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-19
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-17
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-15
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-11
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
pfam01576		859	pfam01576, Myosin_tail_1, Myosin tail	4e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	7e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-09
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	6e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	3e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	9e-08
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	1e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
pfam13514		1118	pfam13514, AAA_27, AAA domain	2e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-07
pfam13514		1118	pfam13514, AAA_27, AAA domain	1e-06
pfam09731		493	pfam09731, Mitofilin, Mitochondrial inner membrane	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
pfam13514		1118	pfam13514, AAA_27, AAA domain	2e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
COG5283		1213	COG5283, COG5283, Phage-related tail protein [Func	5e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	8e-06
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	9e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
COG1511		780	COG1511, COG1511, Predicted membrane protein [Func	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
pfam05622		713	pfam05622, HOOK, HOOK protein	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	4e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-05
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	8e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-04
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	4e-04
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	5e-04
PLN02939		977	PLN02939, PLN02939, transferase, transferring glyc	5e-04
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	5e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	6e-04
COG3264		835	COG3264, COG3264, Small-conductance mechanosensiti	7e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	8e-04
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	9e-04
PRK09039		343	PRK09039, PRK09039, hypothetical protein; Validate	0.001
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.002
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam05622		713	pfam05622, HOOK, HOOK protein	0.003
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.003
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
TIGR03345		852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.003
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	0.004
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.004
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.004
TIGR03185		650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score =  117 bits (295), Expect = 2e-26
 Identities = 160/821 (19%), Positives = 307/821 (37%), Gaps = 55/821 (6%)

Query: 39   KEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEK 98
              EE   L  E  + E+E  ++       E    E   + S ++       +EL     +
Sbjct: 237  LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 99   VKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEA 158
            +  LE + +     L N E +   L+  +   + KL+E  ++  ELE   ++ +E++   
Sbjct: 297  ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 159  GEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEA 218
              +       ++E     E   ++L  ++     L L+I    + ++ LE +L+   D  
Sbjct: 357  EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 219  RKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKE 278
             + ++  +      + E     E +  LE      +E++ ++  L+E L+ L E   E E
Sbjct: 417  ERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE---ELE 471

Query: 279  KVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKE 338
            + E+ L  +  E++ +Q  L      L  L++        +  L +    +        E
Sbjct: 472  EAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

Query: 339  EIS-------ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391
             IS       A++  L    + +  +        +   ++          L + +     
Sbjct: 528  LISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ 587

Query: 392  VNEE------------LDKVSKEKEALEAAMADLTGNIARMKELCSELEE-KLRNSDENF 438
             N+                + K    L  A++ L G +  + +L + LE  K        
Sbjct: 588  GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRI 647

Query: 439  CKTDSLL---------------SQALANN---AELELKLKSLEEQHNETGAAAATASQRN 480
               D  L               S  L       ELE K++ LEE+  E   A A   +  
Sbjct: 648  VTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707

Query: 481  LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540
             ELE+ +    +  EE   Q+  L       E    +LE+++  +  + ++ E E+ E  
Sbjct: 708  EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 541  EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSA 600
            E+L +    L E E E ++L  Q+   K+++  L   L        EL  EL +  E +A
Sbjct: 768  ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAA 820

Query: 601  EDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEK 660
               +R     +R    E   +    ++E   + +  L   +E  +  I+ELE ++  L  
Sbjct: 821  NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880

Query: 661  KCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA-ADEKR 719
            +    E        ++ EL+ EL   +++ S L   L+   +K  +L   L         
Sbjct: 881  ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940

Query: 720  KLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779
              +  S  Y+  L EAE L   + +D    + RL+ +E  +K  G      +E+ +  +E
Sbjct: 941  LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000

Query: 780  QLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANI 820
            + +  T   E  T     LE   E + RE+  + +D    +
Sbjct: 1001 RYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|144972 pfam01576, Myosin_tail_1, Myosin tail	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|227608 COG5283, COG5283, Phage-related tail protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|224428 COG1511, COG1511, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|181619 PRK09039, PRK09039, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1377
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	100.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.97
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.92
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	99.91
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.89
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.88
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.77
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.76
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.75
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.75
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.73
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.72
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.68
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.66
PRK02224		880	chromosome segregation protein; Provisional	99.62
PRK02224		880	chromosome segregation protein; Provisional	99.58
PRK03918		880	chromosome segregation protein; Provisional	99.49
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.46
PRK03918		880	chromosome segregation protein; Provisional	99.37
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.17
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.15
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	99.07
PRK01156		895	chromosome segregation protein; Provisional	99.05
PRK01156		895	chromosome segregation protein; Provisional	99.0
KOG0933		1174	consensus Structural maintenance of chromosome pro	98.78
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.71
KOG0933		1174	consensus Structural maintenance of chromosome pro	98.55
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	98.54
PRK04863		1486	mukB cell division protein MukB; Provisional	98.52
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	98.5
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.48
KOG0964		1200	consensus Structural maintenance of chromosome pro	98.41
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.39
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.33
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.3
PRK04863		1486	mukB cell division protein MukB; Provisional	98.28
PRK04778		569	septation ring formation regulator EzrA; Provision	98.21
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.2
PRK04778		569	septation ring formation regulator EzrA; Provision	98.18
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.15
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.15
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.13
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.11
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.1
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.08
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	98.0
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.98
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.89
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.89
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.88
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.84
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.82
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.8
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.77
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.68
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.62
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.57
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.55
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.53
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.48
PHA02562		562	46 endonuclease subunit; Provisional	97.39
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.34
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.34
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.33
PRK11637		428	AmiB activator; Provisional	97.29
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.27
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.21
PRK11637		428	AmiB activator; Provisional	97.06
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.03
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.01
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	96.91
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	96.81
PF13514		1111	AAA_27: AAA domain	96.77
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.69
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	96.67
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.56
PF13514		1111	AAA_27: AAA domain	96.53
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.52
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.45
KOG0963		629	consensus Transcription factor/CCAAT displacement	96.44
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	96.43
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	96.36
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	96.28
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.23
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	96.22
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.21
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.13
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	96.11
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.94
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.93
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	95.89
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	95.88
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	95.72
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	95.69
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.44
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.36
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.27
KOG1003		205	consensus Actin filament-coating protein tropomyos	94.73
KOG1003		205	consensus Actin filament-coating protein tropomyos	94.71
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	94.55
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.26
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.23
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	94.2
KOG0018		1141	consensus Structural maintenance of chromosome pro	94.19
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	93.97
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.61
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.57
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.42
KOG0018		1141	consensus Structural maintenance of chromosome pro	93.36
PRK09039		343	hypothetical protein; Validated	93.28
KOG1937		521	consensus Uncharacterized conserved protein [Funct	93.26
COG4942		420	Membrane-bound metallopeptidase [Cell division and	93.2
PRK09039		343	hypothetical protein; Validated	93.05
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.05
COG4942		420	Membrane-bound metallopeptidase [Cell division and	92.61
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	92.54
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	92.38
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	92.36
COG4372		499	Uncharacterized protein conserved in bacteria with	92.34
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	92.26
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.01
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	91.87
KOG0963		629	consensus Transcription factor/CCAAT displacement	91.79
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	91.51
PRK11281		1113	hypothetical protein; Provisional	91.5
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.47
PF14662		193	CCDC155: Coiled-coil region of CCDC155	90.95
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	90.64
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.53
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	90.2
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.06
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	89.08
COG4477		570	EzrA Negative regulator of septation ring formatio	88.9
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	88.51
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.34
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	88.33
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	88.25
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	88.18
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	88.11
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.82
PLN02939		977	transferase, transferring glycosyl groups	87.58
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	87.38
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	87.01
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.77
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	86.76
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	86.56
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.88
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.86
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	85.85
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	85.7
COG5185		622	HEC1 Protein involved in chromosome segregation, i	85.53
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.85
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	84.7
PRK11281		1113	hypothetical protein; Provisional	84.63
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.61
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	83.99
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	83.9
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	83.88
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	82.74
PRK11519		719	tyrosine kinase; Provisional	82.68
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	82.4
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.11
PF14073		178	Cep57_CLD: Centrosome localisation domain of Cep57	81.57
COG1842		225	PspA Phage shock protein A (IM30), suppresses sigm	81.56
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	81.47
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.21
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	81.09
PF09304		107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	80.9
PF04912		388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	80.76
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	80.37
TIGR02977		219	phageshock_pspA phage shock protein A. Members of	80.29
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	80.18
KOG1850		391	consensus Myosin-like coiled-coil protein [Cytoske	80.07
PRK10929		1109	putative mechanosensitive channel protein; Provisi	80.02

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=3e-72  Score=732.84  Aligned_cols=927  Identities=26%  Similarity=0.347  Sum_probs=843.9

Q ss_pred             hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000641          115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-------AKRKELAEVK  187 (1377)
Q Consensus       115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~-------~~~~~L~~~k  187 (1377)
                      +.+++|.++++++..+++++.+.+...++|+..+.++..           +++.|+.+|+++.       +++.++...+
T Consensus       835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k  903 (1930)
T KOG0161|consen  835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK  903 (1930)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999           9999999999998       5566666655


Q ss_pred             H--------------HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhH
Q 000641          188 E--------------AFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA  253 (1377)
Q Consensus       188 e--------------~~e~~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~  253 (1377)
                      .              ..++.+..++..++++++.|++|+..+++         .+++     ++| +++|+.        
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~--------  960 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN--------  960 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence            2              22888999999999999999999999999         8888     999 999999        


Q ss_pred             HhHHHHHHhHHHHHhhhhhhhhhhhh----HHHHHHhhhhhhhHHHHH-hCCCH------HHHHHHHHhhhhHHHhhhhh
Q 000641          254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL  322 (1377)
Q Consensus       254 KtlE~ql~~l~ee~~~~~~~~~~~~k----~ee~ls~~~~eL~~~~e~-lglsK------aiL~~vekkf~~~k~l~k~~  322 (1377)
                       ++++++..++++|.+++|.++++++    +++++..+.++|+..+++ .+++|      ++|++++..|.+.+.    .
T Consensus       961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen  961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence             9999999999999999999999988    789999999999998888 99988      899999999999999    7


Q ss_pred             HHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000641          323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK  398 (1377)
Q Consensus       323 ~~el~~~K~----~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~  398 (1377)
                      +.++++.++    .+..+++.+..+.....+|..++.+++.++..++.+++++...+..+...+.++.+++.++.++|+.
T Consensus      1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776666    8889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhcc
Q 000641          399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ  478 (1377)
Q Consensus       399 l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~q  478 (1377)
                      .+..+.++++.+.||...+..+...+++............+|++.          |+..+++++++.+..|++.++++|+
T Consensus      1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999966655555544444444444447789999          9999999999999999999999999


Q ss_pred             ch----HHHHHHHHH---hHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000641          479 RN----LELEDIIRA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS  540 (1377)
Q Consensus       479 k~----~EL~~qi~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLe  540 (1377)
                      +|    .+|.+|+++   .|+.+++.|+.+           ..+...+.+.++.++.++.++.+++.+++++.+.+.++.
T Consensus      1186 ~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~ 1265 (1930)
T KOG0161|consen 1186 KHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLT 1265 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99    899999999   899999999988           667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHhhh-HHHH
Q 000641          541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDR  605 (1377)
Q Consensus       541 ekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r  605 (1377)
                      .+..++..++..+.+.+++....+..+......+++++.              .+...++.+..+++.+++++++ .+++
T Consensus      1266 ~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~ 1345 (1930)
T KOG0161|consen 1266 AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAK 1345 (1930)
T ss_pred             HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888              7788899999999999999999 7888


Q ss_pred             hhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH-------
Q 000641          606 ANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE-------  652 (1377)
Q Consensus       606 a~~~rqrs~eLeell~~~kskLEe~~~~-leelEe~------------------------LE~~K~Rlq-ELE-------  652 (1377)
                      .+..++.+....+ +..|+.++++.... ++++++.                        ++..+.+++ +++       
T Consensus      1346 ~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1346 NELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            8888888777777 77888888765543 4555543                        455555533 222       


Q ss_pred             ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q 000641          653 ---EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELT  708 (1377)
Q Consensus       653 ---eqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek---------------------~reL~  708 (1377)
                         ..+..++++++.|++.+++|.....++..+++....+.+..++.+......                     +.++.
T Consensus      1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               458899999999999999999999999999998887777776633333222                     22445


Q ss_pred             HHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 000641          709 ESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKS  776 (1377)
Q Consensus       709 eql~el-------ek~k~~LE~EieElkeqLeElE~~Le-----~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~  776 (1377)
                      .+++++       +..++.++.++.+++.+|.|++..++     .+|.++++.+.+.+ ++++|+.+   ++++++++++
T Consensus      1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEELRKN 1580 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHHHHH
Confidence            555444       67789999999999999999999876     88999999999999 99999999   9999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000641          777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-  852 (1377)
Q Consensus       777 ~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~-  852 (1377)
                      |+++|++++++|+++++.++++.    +.+||||+||++   +++++|+..++++   |+|++++.||++||.++++++ 
T Consensus      1581 ~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~~~~ 1653 (1930)
T KOG0161|consen 1581 LQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELEDAQR 1653 (1930)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999    999999999999   9999999999999   999999999999999999877 


Q ss_pred             -------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHH
Q 000641          853 -------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLD  919 (1377)
Q Consensus       853 -------------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~  919 (1377)
                                   +|+..+.+|++++...+.+++|++++++.+++|+.+.++.++++|+.++..|++|+++|..|+++|+
T Consensus      1654 ~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1654 AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence                         8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 000641          920 SAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE  999 (1377)
Q Consensus       920 ~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~  999 (1377)
                      +++++++.+.+|.+++..+++++++++            +.++.++++.+++++  .|+++||||+.||+++|+.+..  
T Consensus      1734 e~~~~~~~~~Er~kka~~~a~~~~~el------------~~Eq~~~~~le~~k~--~LE~~~kdLq~rL~e~E~~a~~-- 1797 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEEL------------RKEQETSQKLERLKK--SLERQVKDLQLRLDEAEQAALK-- 1797 (1930)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhh--
Confidence            999999999999999999999999999            999999999999999  9999999999999999999999  


Q ss_pred             HHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccc
Q 000641         1000 EQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEK 1079 (1377)
Q Consensus      1000 ~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~ 1079 (1377)
                                +|++        .+..++++|..|+..   ++.|-+++..++    +.++.+++.|++++.|     ++.
T Consensus      1798 ----------~~k~--------~i~~Learir~LE~~---l~~E~~~~~e~~----k~~rk~er~vkEl~~q-----~ee 1847 (1930)
T KOG0161|consen 1798 ----------GGKK--------QIAKLEARIRELESE---LEGEQRRKAEAI----KGLRKKERRVKELQFQ-----VEE 1847 (1930)
T ss_pred             ----------ccHH--------HHHHHHHHHHHHHHH---HhHhhhhhHHHh----HHHHHHHHHHHHHHHH-----hhh
Confidence                      9999        999999999999999   999999999999    9999999999999999     345


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000641         1080 DETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIES 1159 (1377)
Q Consensus      1080 ~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~ 1159 (1377)
                      ++  +    +...+++.+.+++.++..|++|+++++...++.+.+|++.+++++++.           +..|+|+++|..
T Consensus      1848 d~--k----~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~-----------erad~~e~~~~~ 1910 (1930)
T KOG0161|consen 1848 DK--K----NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAE-----------ERADTAESELNK 1910 (1930)
T ss_pred             hh--h----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            55  4    788999999999999999999999999999999999999999999999           889999999999


Q ss_pred             HHHHHH
Q 000641         1160 LKAQAA 1165 (1377)
Q Consensus      1160 lk~~~~ 1165 (1377)
                      +|....
T Consensus      1911 lr~k~r 1916 (1930)
T KOG0161|consen 1911 LRSKLR 1916 (1930)
T ss_pred             HHHHHH
Confidence            998764

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>PRK11519 tyrosine kinase; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57	Back alignment and domain information

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)	Back alignment and domain information

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>TIGR02977 phageshock_pspA phage shock protein A	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1377
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-21
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	3e-06
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	4e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	9e-05
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
3ghg_C		411	Fibrinogen gamma chain; triple-stranded coiled coi	3e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	9e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  109 bits (273), Expect = 4e-24
 Identities = 111/706 (15%), Positives = 219/706 (31%), Gaps = 221/706 (31%)

Query: 88  SSRELLEANEK--VKELEI----ELERAATALKNAEIENARLQDDVLITKEKLEESGKKC 141
             +++L   E   V   +     ++ ++   L   EI      D ++++K+ +  + +  
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEI------DHIIMSKDAVSGTLRLF 68

Query: 142 EELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSR 201
             L   Q++  ++ VE   + N +   +   ++  E ++  +               + R
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKF--LMSPIK-TEQRQPSMMTR---------MYIEQR 116

Query: 202 SRLQELEHKL-QCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQM 260
            RL        + +V   + + +L            ++AL    L    NV    ++G +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL------------RQALL--ELRPAKNVL---IDG-V 158

Query: 261 ASLQEELKG-----LNEKISEKEKVEEE---------LKRSNTEISAIQEELGLSKLQLL 306
                   G     +   +    KV+ +         LK  N+  + ++         L 
Sbjct: 159 L-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQ 203

Query: 307 DLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAK---VSELED 363
            L  +         N T   D     + +     + L  LL   K   +     V  L +
Sbjct: 204 KLLYQIDP------NWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLV--LLN 252

Query: 364 IKLKLQEEVNARESVEA-------VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416
                   V   ++  A       +L T+  QV++    L   +    +L+     LT  
Sbjct: 253 --------VQNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTP- 300

Query: 417 IARMKELCSE-LEEKLRNSDENFCKTDSLLSQALANNAELELKL--KSLEEQHNETGAAA 473
              +K L  + L+          C+   L  + L  N    L +  +S+ +         
Sbjct: 301 -DEVKSLLLKYLD----------CRPQDLPREVLTTNP-RRLSIIAESIRDGLA------ 342

Query: 474 ATAS---QRNLE-LEDIIRASNEAAEEAKSQLRELEPRFIAAEQR-----------SVEL 518
            T       N + L  II +S          L  LEP    AE R           S  +
Sbjct: 343 -TWDNWKHVNCDKLTTIIESS----------LNVLEP----AEYRKMFDRLSVFPPSAHI 387

Query: 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578
              L L  +     + +V     KL + S   K+ +E    +     + K K+   E  L
Sbjct: 388 PTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYAL 445

Query: 579 NQSNTRSSELEEELRITKERSAEDEDRANMS---------HQRSIELE---DLFQTSH-- 624
           ++S      + +   I K   ++D     +          H ++IE      LF+     
Sbjct: 446 HRS------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 625 -----SKLEGTGKRVNE----LELLLEAEKYR--IQE----LEEQISKLEK---KCEEAE 666
                 K+       N     L  L + + Y+  I +     E  ++ +     K EE  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-- 557

Query: 667 AGSKQYSDKVCELASELEAFQARTSSLEVALQ-----MANDKEREL 707
                   K  +L             L +AL      +  +  +++
Sbjct: 558 ---NLICSKYTDL-------------LRIALMAEDEAIFEEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00