Citrus Sinensis ID: 000665

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360---

MAPNNENLRDLQWLFQAIESESLNLHNLSFFLSQPATGCHQETENSMNINIGKDTLLYFPHLLTLLVTAEKAHTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIYQRLGQKGRSEPDIDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRVYQLCNDLIQILSDWRSENYNKPAMKWKEFAELCQVKVPPLRIRSRHDNKDKVEMRRRAIATCLHHIGEVIYFDELGFLILDCEWFCSEVLSKLIKLEVRKQSSLENNGFTSRKELEKILRGSLQSQIPGMGSKVFENLEASDLVRMMLKLELCYEQDPSDPDSLLLIPSILEEGRGKPQKWQIDSPDCIYAGRHLECDDSSHMFLTPGFFPQFDCLQIQVHLHNRIMALKNQHGATYNLEKYLISIIINGIYIRVELGGQLGYYIDVLACSTKNLTETLRLIHQLIIPAIQSLCQGVTLTENILRPECVRNLTPPRYRKTQFVHVQLLKQALLSLPADSMYDYQHTWDLVSDSGKPILRAAFDLARDLLSDDDFREVLHRRYHDLHNLAVELQVPTENNPEEPDPSNEPDGKVEPTFGGIAKEIQGLRYYEHRLLIELHRKVNYMANFNVQLEERKVPNMIYFVRTENYSRKLITNIISGMTALRLHMLCEFRREMHVVEDQMGCEIMQVDNRTVKSLAPYMTKFMKLLTFALKIGAHLATGMGQLIPDLSKEVAHLADSSLVYGAAGAVAAGAVGAVAMGRVEGSRNRSRSRAGDIQQELIAVQQWVVDFLRERRCSTGKDIAEKFGLWRVRYRDDGHIAWICRRHMIVRAHEVIEVPI

ccccccccHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHcccEEEEccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEccccccEEEEcccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccEEEEccccEEEEcccHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccccccCEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccEEEccccccHHHHHHHHccccccccccccccccCEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHcccEEEEEcccccEEEEEcHHHHHcccccEEccc

******NLRDLQWLFQAIESESLNLHNLSFFLSQPATGCHQETENSMNINIGKDTLLYFPHLLTLLVTAEKAHTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIYQRLGQKGRSEPDIDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPT****KTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRVYQLCNDLIQILSDWRSENYNKPAMKWKEFAELCQVKVPPLRIRSRHDNKDKVEMRRRAIATCLHHIGEVIYFDELGFLILDCEWFCSEVLSKLIKLEVRKQSSLENNGFTSRKELEKILRGSLQSQIPGMGSKVFENLEASDLVRMMLKLELCYEQDPSDPDSLLLIPSILEEGRG*PQKWQIDSPDCIYAGRHLECDDSSHMFLTPGFFPQFDCLQIQVHLHNRIMALKNQHGATYNLEKYLISIIINGIYIRVELGGQLGYYIDVLACSTKNLTETLRLIHQLIIPAIQSLCQGVTLTENILRPECVRNLTPPRYRKTQFVHVQLLKQALLSLPADSMYDYQHTWDLVSDSGKPILRAAFDLARDLLSDDDFREVLHRRYHDLHNLAVELQVPT***************KVEPTFGGIAKEIQGLRYYEHRLLIELHRKVNYMANFNVQLEERKVPNMIYFVRTENYSRKLITNIISGMTALRLHMLCEFRREMHVVEDQMGCEIMQVDNRTVKSLAPYMTKFMKLLTFALKIGAHLATGMGQLIPDLSKEVAHLADSSLVYGAAGAVAAGAVGAVAMGR**************IQQELIAVQQWVVDFLRERRCSTGKDIAEKFGLWRVRYRDDGHIAWICRRHMIVRAHEVIEVPI

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Protein TORNADO 1	Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization. Required for initial divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis.	probable	Q9FJ57

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1IO0, chain A
Confidence level:confident
Coverage over the Query: 258-420
View the alignment between query and template
View the model in PyMOL

Template: 3DPU, chain A
Confidence level:probable
Coverage over the Query: 493-513,524-586,601-737,748-929
View the alignment between query and template
View the model in PyMOL

Template: 1Z7X, chain W
Confidence level:probable
Coverage over the Query: 74-216,240-459
View the alignment between query and template
View the model in PyMOL

Template: 2CA6, chain A
Confidence level:probable
Coverage over the Query: 141-210,233-461
View the alignment between query and template
View the model in PyMOL

Template: 3R7W, chain A
Confidence level:probable
Coverage over the Query: 510-525,539-713
View the alignment between query and template
View the model in PyMOL