Citrus Sinensis ID: 000697
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1348 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YQ1 | 1344 | Regulatory-associated pro | yes | no | 0.986 | 0.989 | 0.790 | 0.0 | |
| Q9LZW9 | 1336 | Regulatory-associated pro | no | no | 0.966 | 0.975 | 0.725 | 0.0 | |
| Q0IQN5 | 1359 | Regulatory-associated pro | yes | no | 0.982 | 0.974 | 0.697 | 0.0 | |
| C7J8E5 | 1218 | Regulatory-associated pro | yes | no | 0.888 | 0.983 | 0.714 | 0.0 | |
| Q8N122 | 1335 | Regulatory-associated pro | yes | no | 0.902 | 0.911 | 0.423 | 0.0 | |
| Q8K4Q0 | 1335 | Regulatory-associated pro | yes | no | 0.890 | 0.899 | 0.415 | 0.0 | |
| P87141 | 1313 | WD repeat-containing prot | yes | no | 0.511 | 0.524 | 0.474 | 0.0 | |
| Q55BR7 | 1509 | Protein raptor homolog OS | yes | no | 0.333 | 0.297 | 0.576 | 1e-156 | |
| P38873 | 1557 | Target of rapamycin compl | yes | no | 0.244 | 0.211 | 0.476 | 3e-96 | |
| Q0DJA3 | 437 | Double-stranded RNA-bindi | no | no | 0.060 | 0.185 | 0.817 | 1e-33 |
| >sp|Q93YQ1|RTOR1_ARATH Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2098 bits (5437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1071/1355 (79%), Positives = 1181/1355 (87%), Gaps = 25/1355 (1%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRY-YP 1302
Query: 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
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Probable component of the plant TOR kinase pathway that recruits substrates for TOR. Modulates plant cell growth and regulates the activity of ATPK1 kinase in response to osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2 OS=Arabidopsis thaliana GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1951 bits (5054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 996/1373 (72%), Positives = 1130/1373 (82%), Gaps = 70/1373 (5%)
Query: 1 MALGDLMASRFSQSAV--VSNHLNDD----CGSAHGD--VDLRRDSDTASSSYTNNASVT 52
MALGDLM SR SQS+V V+NHL DD SAH D V + ASSSY N
Sbjct: 1 MALGDLMVSRLSQSSVTVVTNHLYDDDDNCASSAHDDSRVSIIASPRVASSSYEN----- 55
Query: 53 TITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLC 112
+ TS+AYLPQT+VLC+LRH+ +AS P +WR K+RMKTGCVALV+C
Sbjct: 56 ---LSAATSMAYLPQTLVLCDLRHD--DASDIVQPP------RWRLKERMKTGCVALVMC 104
Query: 113 LNISVDPPDVIKISPCARMECWIDPFSM-APQKALETIGKNLSQQYERWQPRARYKVQLD 171
L+I+VDPPDVIKISPCAR+ECWIDPFSM P++ALE IG+NLS QYERW RARYKV+LD
Sbjct: 105 LHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQYERWLARARYKVELD 164
Query: 172 PTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDS 231
PT D+V+KLC +CR+YAK ERVLFHYNGHGVPKPT NGEIW++NK++TQYIPLP+S+LDS
Sbjct: 165 PTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDS 224
Query: 232 WLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPA 291
WLKTP+IYVFDCSAA +I+NAF E SG +DCILLAAC+ HETLPQS EFPA
Sbjct: 225 WLKTPTIYVFDCSAARVILNAFAE------GESSGPPKDCILLAACDVHETLPQSVEFPA 278
Query: 292 DVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDT 351
DVFTSCLTTPI +AL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDT
Sbjct: 279 DVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDT 338
Query: 352 IAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAW 411
IAWNVLP +LFQRLFRQDLLVASLFRNFLLAERIMRS NC+PISHPMLPPTHQHHMWDAW
Sbjct: 339 IAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAW 398
Query: 412 DMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 471
DMAAEICLSQLP DPN E+QPS FF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL
Sbjct: 399 DMAAEICLSQLPQFFLDPNTEFQPSSFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 458
Query: 472 SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILAL 531
SQCHR+RALVLLGRFLDMGPWAVDLALSVGI+P V+KLLQTTT ELRQILVFIWTKILAL
Sbjct: 459 SQCHRYRALVLLGRFLDMGPWAVDLALSVGIYPCVVKLLQTTTIELRQILVFIWTKILAL 518
Query: 532 DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHV 591
DKSCQVDLVKD GH YFIRFLDS +A+PEQRAMAAF+LAVIVDG++RGQE+C+EA LI V
Sbjct: 519 DKSCQVDLVKDRGHIYFIRFLDSSDAFPEQRAMAAFILAVIVDGYKRGQESCLEANLIAV 578
Query: 592 CLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP----AIYVPLLSE 647
CL HL+ + D EPLFLQWLCLCLGKLWED+ EAQ +GR A+A A + LL
Sbjct: 579 CLGHLEATQLCDPPPEPLFLQWLCLCLGKLWEDYLEAQIMGREANASENLIAGHTNLL-- 636
Query: 648 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPL 707
+VRA+AVF+LGTLLD+GFDS + GV DEE DDDE I +I II+SLL VVSDGSPL
Sbjct: 637 ---QVRAAAVFALGTLLDVGFDSGK-GV-CDEEFDDDENIVEDI-IIKSLLDVVSDGSPL 690
Query: 708 VRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGP 767
VR EVAVALARFAFGHKQHLKS+A +Y KPQ NSL SLPS+A +G+ + SS +G
Sbjct: 691 VRTEVAVALARFAFGHKQHLKSVADSYWKPQ-NSLRTSLPSMAKFHDSGTSIVASSDMGS 749
Query: 768 LTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMR 825
LTR ++ V R+GR+S+S +GLM GSPL+DDSS HSD GI++DGVSNGVV+ +
Sbjct: 750 LTRASPDSQPVAREGRISSSLQEPFSGLMQGSPLADDSSLHSDVGIIHDGVSNGVVH--Q 807
Query: 826 PKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDP 885
P+PLD+AIYSQ VLAM TLAKDPSPRIA+LGRRVLS+IGIEQ+V KP S G RPG+
Sbjct: 808 PRPLDNAIYSQSVLAMFTLAKDPSPRIASLGRRVLSVIGIEQIVAKPSKSNG---RPGEA 864
Query: 886 TTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLIN 945
+A+ TP LAGLVRSSSWFDM+ GHLPL FRTPPVSPP+ S+L G+RRVCSLE RPHL+
Sbjct: 865 ASASHTP-LAGLVRSSSWFDMHTGHLPLTFRTPPVSPPQTSYLTGLRRVCSLELRPHLLG 923
Query: 946 SPDSGLADPLLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREER 1004
SPDSGLADP+LG SG SERSLLP STIYNWSCGHFSKPLL AD EEI A+REE+
Sbjct: 924 SPDSGLADPILGVSG-----SERSLLPQSTIYNWSCGHFSKPLLGGADANEEIAAQREEK 978
Query: 1005 EKFALEHIAKCQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWN 1063
+KF+LEHIAKCQ SS+S L+N PIA WDT+FE GTKTALL PFSPIVVAADENERI++WN
Sbjct: 979 KKFSLEHIAKCQHSSISGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWN 1038
Query: 1064 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--------GNIRIWKDYDQK 1115
YEE TLLN FDN+DFPDKGIS LCLVNELD SLLLVASCN IRIWKDY K
Sbjct: 1039 YEEATLLNGFDNNDFPDKGISNLCLVNELDDSLLLVASCNVPTLSRASFAIRIWKDYATK 1098
Query: 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175
+QKLVT FSSIQG KPG N VVDWQQQSGYLY SGE SIM+WDL+KE Q+V +P
Sbjct: 1099 GRQKLVTGFSSIQGQKPGASGLNAVVDWQQQSGYLYVSGESLSIMVWDLDKE-QLVKSMP 1157
Query: 1176 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235
S CS++AL+ASQVHG QLAAGF DGSVRLYDVRTPD LVC+TRPH Q+VE+VVG+SFQ
Sbjct: 1158 FESGCSVTALSASQVHGSQLAAGFADGSVRLYDVRTPDFLVCATRPH-QRVEKVVGLSFQ 1216
Query: 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1295
PGLDPAKIVSASQAGDIQFLD+R K+ YLTIDAHRGSL+AL VHRHAPIIASGSAKQLI
Sbjct: 1217 PGLDPAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLTALGVHRHAPIIASGSAKQLI 1276
Query: 1296 KVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
KVFSL+GEQLG I+Y H SFM Q+IG V+CL FHPYQ+LLAAG+A + VS+++
Sbjct: 1277 KVFSLKGEQLGIIKY-HTSFMGQQIGPVSCLAFHPYQMLLAAGAAGSFVSLYT 1328
|
Probable component of the plant TOR kinase pathway. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0IQN5|RTOR1_ORYSJ Regulatory-associated protein of TOR 1 OS=Oryza sativa subsp. japonica GN=RAPTOR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1878 bits (4866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/1375 (69%), Positives = 1111/1375 (80%), Gaps = 50/1375 (3%)
Query: 1 MALGDLMASRFSQSAVV------------SNHLNDDCGSAHGDVDLRRDSDTASSSYTNN 48
MALGDLMASR S+ +NHL DD D RRD
Sbjct: 1 MALGDLMASRLVHSSSSSAAPSAALPNHHTNHLVDDHLPVENGPDPRRDVPDEEPPPPPP 60
Query: 49 ASVTTITTTTTTSLAYLPQTVVLCELRHEAFE--ASTPSGPSDSGLVSKWRPKDRMKTGC 106
V A LPQ VVLCE RHE F+ A+ +GPS SG VSKWRPKDRMKTGC
Sbjct: 61 PQV-----------ALLPQVVVLCEQRHEGFDEAAAAAAGPSTSGPVSKWRPKDRMKTGC 109
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
VALVLCLNISVDPPDVIKISPCAR ECWIDPFSMAP KALETIGK L QYERWQP+ARY
Sbjct: 110 VALVLCLNISVDPPDVIKISPCARKECWIDPFSMAPPKALETIGKTLHSQYERWQPKARY 169
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
K+QLDPT++EVKKLCNTCR++A+ ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPI
Sbjct: 170 KLQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPI 229
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQS 286
+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW +S+ + S++DCILLAACEAH+TLPQS
Sbjct: 230 TDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDWSSSSSASSSKDCILLAACEAHQTLPQS 289
Query: 287 EEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFT 346
EFPADVFT+CLTTPI MAL WFC RSLL +S++++LID+IPGRQ DR+TLLGELNWIFT
Sbjct: 290 AEFPADVFTACLTTPIKMALHWFCNRSLLRDSMEHNLIDQIPGRQNDRKTLLGELNWIFT 349
Query: 347 AVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHH 406
A+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPIS+P+LPPTHQHH
Sbjct: 350 AITDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISYPLLPPTHQHH 409
Query: 407 MWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIV 466
MWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF+EQLTAFEVWLDHGSE KKPPEQLPIV
Sbjct: 410 MWDAWDMAAEICLSKLPQLIADPNAEFQPSPFFTEQLTAFEVWLDHGSEDKKPPEQLPIV 469
Query: 467 LQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWT 526
LQVLLSQ HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT+ ELRQILVFIWT
Sbjct: 470 LQVLLSQSHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTSAMELRQILVFIWT 529
Query: 527 KILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586
KIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYPEQRAMAAFVLAVIVDGHR GQEAC A
Sbjct: 530 KILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYPEQRAMAAFVLAVIVDGHRIGQEACANA 589
Query: 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 646
GLI VCL+HLQ PNDAQTEPL LQWLCLCLGKLWEDF EAQ +G +++AP I + LLS
Sbjct: 590 GLIDVCLRHLQPENPNDAQTEPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLS 649
Query: 647 EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSP 706
EPQPEVRASAVF+LG L+DIG S + ++ DEK+RAEI+++RSLL + SDGSP
Sbjct: 650 EPQPEVRASAVFALGNLVDIGSPSLNGADDDSDD---DEKVRAEINVVRSLLQISSDGSP 706
Query: 707 LVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTG---------S 757
LVR+EVAVAL RFA GH +H+KS+AA Y KPQ+NSLL SLPSLA+I ++
Sbjct: 707 LVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQTNSLLKSLPSLANINSSNVYSPSSLIQG 766
Query: 758 GSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGI-LND 814
S ++S IGP+ RVG N A RDGR+STSSP+A +MHGSP SDDSSQHSDSGI L +
Sbjct: 767 SSGLASHIGPVLRVGSDNSATARDGRISTSSPIATNSIMHGSPQSDDSSQHSDSGILLRE 826
Query: 815 GVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVM 874
SNG +N+ R +P+D+ IYSQ + MC +AKDP PRIA++G+R LS+IG+EQV +
Sbjct: 827 NASNGGLNYSRSRPIDNGIYSQFIATMCNVAKDPYPRIASIGKRALSLIGVEQVSMRNSR 886
Query: 875 SMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRV 934
+ PG+ T+ P S G+ RSSSWFDMN G+ + FRTPPVSPP+ +L G+RRV
Sbjct: 887 LSNGGAHPGE--TSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPPQHDYLTGLRRV 944
Query: 935 CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDT 994
CS+EFRPH++NSPD GLADPLL S + +LP S IY WSCGHFS+PLLT +DD
Sbjct: 945 CSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGLYILPQSLIYRWSCGHFSRPLLTGSDDN 1003
Query: 995 EEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAAD 1054
EE ARREERE+ A++ IAKCQRSS K+ + IA WDTRFE GTK +LL PFSPIVVAAD
Sbjct: 1004 EEANARREERERIAMDCIAKCQRSSC-KMTSQIASWDTRFELGTKASLLLPFSPIVVAAD 1062
Query: 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114
ENE+I++WNY++ +N+F+NH D+G+SKL L+NELD SLLLV S +GN+RIW++Y Q
Sbjct: 1063 ENEQIRVWNYDDALPVNTFENHKLSDRGLSKLLLINELDDSLLLVGSSDGNVRIWRNYTQ 1122
Query: 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174
K QKLVTAFSS+QG++ R ++V DWQQQSGYLYASG++SSI++WDL+KEQ VN I
Sbjct: 1123 KGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQSGYLYASGDMSSILVWDLDKEQ--VNTI 1178
Query: 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234
S++D ISAL+ASQV GQ AAGF+D SVR++DVRTPD LV + RPH + E+VVGI F
Sbjct: 1179 QSTADSGISALSASQVRCGQFAAGFLDASVRIFDVRTPDRLVYTARPHAPRSEKVVGIGF 1238
Query: 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL 1294
QPG DP KIVSASQAGDIQFLD+R + YLTI+AHRGSL+ALAVHRHAP+IASGSAKQ+
Sbjct: 1239 QPGFDPYKIVSASQAGDIQFLDVRRASEPYLTIEAHRGSLTALAVHRHAPVIASGSAKQM 1298
Query: 1295 IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-ACVSIHS 1348
IKVFSLEGEQL IRY PSFM Q+IGSVNCL+FH Y+ LLAAG+ D A VSI++
Sbjct: 1299 IKVFSLEGEQLTIIRY-QPSFMGQRIGSVNCLSFHRYKSLLAAGAGDNALVSIYA 1352
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|C7J8E5|RTOR2_ORYSJ Regulatory-associated protein of TOR 2 OS=Oryza sativa subsp. japonica GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1744 bits (4517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1222 (71%), Positives = 1021/1222 (83%), Gaps = 24/1222 (1%)
Query: 140 MAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNG 199
MAP KALETIGK L QYERWQP+ARYK+QLDPT++EVKKLCNTCR++A+ ERVLFHYNG
Sbjct: 1 MAPPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCRKFARTERVLFHYNG 60
Query: 200 HGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW 259
HGVPKPTANGEIW+FNKSYTQYIPLPI+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW
Sbjct: 61 HGVPKPTANGEIWVFNKSYTQYIPLPITDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDW 120
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
+S+ + S++DCILLAACEAH+TLPQS EFPADVFT+CLTTPI MAL WFC RSLL +S+
Sbjct: 121 SSSSSASSSKDCILLAACEAHQTLPQSAEFPADVFTACLTTPIKMALHWFCNRSLLRDSM 180
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
+++LID+IPGRQ DR+TLLGELNWIFTA+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNF
Sbjct: 181 EHNLIDQIPGRQNDRKTLLGELNWIFTAITDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 240
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANCSPIS+P+LPPTHQHHMWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF
Sbjct: 241 LLAERIMRSANCSPISYPLLPPTHQHHMWDAWDMAAEICLSKLPQLIADPNAEFQPSPFF 300
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWLDHGSE KKPPEQLPIVLQVLLSQ HRFRALVLLGRFLDMGPWAVDLALS
Sbjct: 301 TEQLTAFEVWLDHGSEDKKPPEQLPIVLQVLLSQSHRFRALVLLGRFLDMGPWAVDLALS 360
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQT+ ELRQILVFIWTKIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYP
Sbjct: 361 VGIFPYVLKLLQTSAMELRQILVFIWTKILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYP 420
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
EQRAMAAFVLAVIVDGHR GQEAC AGLI+VCL+HLQ PNDAQTEPL LQWLCLCLG
Sbjct: 421 EQRAMAAFVLAVIVDGHRVGQEACANAGLIYVCLRHLQPENPNDAQTEPLLLQWLCLCLG 480
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDE 679
KLWEDF EAQ +G +++AP I + LLSEPQPEVRASAVF+LG L+DIG S + +
Sbjct: 481 KLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLVDIGSPSLNGADDDSD 540
Query: 680 ECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQS 739
+ DEK+RAEI+++RSLL + SDGSPLVR+EVAVAL RFA GH +H+KS+AA Y KPQ+
Sbjct: 541 D---DEKVRAEINVVRSLLQISSDGSPLVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQT 597
Query: 740 NSLLGSLPSLAHIKTTG---------SGSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPL 788
NSLL SLPSLA+I ++ S ++S IGP+ RVG N A RDGR+STSSP+
Sbjct: 598 NSLLKSLPSLANINSSNVYSPSSLIQGSSGLASHIGPVLRVGSDNSATARDGRISTSSPI 657
Query: 789 ANAGLMHGSPLSDDSSQHSDSGI-LNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKD 847
A +MHGSP SDDSSQHSDSGI L + SNG +N+ R +P+D+ IYSQ + MC +AKD
Sbjct: 658 ATNSIMHGSPQSDDSSQHSDSGILLRENASNGGLNYSRSRPIDNGIYSQFIATMCNVAKD 717
Query: 848 PSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMN 907
P PRIA++G+R LS+IG+EQV + + PG+ T+ P S G+ RSSSWFDMN
Sbjct: 718 PYPRIASIGKRALSLIGVEQVSMRNSRLSNGGAHPGE--TSVPPSSNFGMARSSSWFDMN 775
Query: 908 GGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSER 967
G+ + FRTPPVSPP+ +L G+RRVCS+EFRPH++NSPD GLADPLL S +
Sbjct: 776 SGNFSMAFRTPPVSPPQHDYLTGLRRVCSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGL 834
Query: 968 SLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPI 1027
+LP S IY WSCGHFS+PLLT +DD EE ARREERE+ A++ IAKCQRSS K+ + I
Sbjct: 835 DILPQSLIYRWSCGHFSRPLLTGSDDNEEANARREERERIAMDCIAKCQRSSC-KMTSQI 893
Query: 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087
A WDTRFE GTK +LL PFSPIVVAADENE+I++WNY++ +N+F+NH D+G+SKL
Sbjct: 894 ASWDTRFELGTKASLLLPFSPIVVAADENEQIRVWNYDDALPVNTFENHKLSDRGLSKLL 953
Query: 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147
L+NELD SLLLV S +GN+RIW++Y QK QKLVTAFSS+QG++ R ++V DWQQQS
Sbjct: 954 LINELDDSLLLVGSSDGNVRIWRNYTQKGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQS 1011
Query: 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207
GYLYASG++SSI++WDL+KE Q+VN I S++D ISAL+ASQV GQ AAGF+D SVR++
Sbjct: 1012 GYLYASGDMSSILVWDLDKE-QLVNTIQSTADSGISALSASQVRCGQFAAGFLDASVRIF 1070
Query: 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267
DVRTPD LV + RPH + E+VVGI FQPG DP KIVSASQAGDIQFLD+R + YLTI
Sbjct: 1071 DVRTPDRLVYTARPHAPRSEKVVGIGFQPGFDPYKIVSASQAGDIQFLDVRRASEPYLTI 1130
Query: 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1327
+AHRGSL ALAVHRHAP+IASGSAKQ+IKVFSLEGEQL IRY PSFM Q+IGSVNCL+
Sbjct: 1131 EAHRGSLMALAVHRHAPVIASGSAKQMIKVFSLEGEQLTIIRY-QPSFMGQRIGSVNCLS 1189
Query: 1328 FHPYQVLLAAGSAD-ACVSIHS 1348
FH Y+ LLAAG+ D A VSI++
Sbjct: 1190 FHRYKSLLAAGAGDNALVSIYA 1211
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8N122|RPTOR_HUMAN Regulatory-associated protein of mTOR OS=Homo sapiens GN=RPTOR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1325 (42%), Positives = 767/1325 (57%), Gaps = 108/1325 (8%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +VSDGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLVSDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-------RVGNEAVVRDGRVSTSS 786
+ + + N +LPS A TT GS+ + P T GN V R S +
Sbjct: 685 FIEEEKNY---ALPSPA---TTEGGSLTPVRDSPCTPRLRSVSSYGNIRAVATAR-SLNK 737
Query: 787 PLANAGLMHGS--------------------PLSDDSSQHSDSGILNDGV----SNGVVN 822
L N L S S ++ +H S D + S +N
Sbjct: 738 SLQNLSLTEESGGAVAFSPGNLSTSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLN 797
Query: 823 HMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRP 882
+ +S +Y+Q + LA DP P ++ + +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNS-VYTQIWRVLLHLAADPYPEVSDVAMKVLNSIAYKATVNARPQRVLDTSSL 856
Query: 883 GDPTTAAPTPSLAGLVRSSS---WFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 939
A+PT + ++ + L PVS S PG ++
Sbjct: 857 TQSAPASPTNKGVHIHQAGGSPPASSTSSSSLTNDVAKQPVSRDLPSGRPGTTGPAGAQY 916
Query: 940 RPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLT 989
PH P+ D +G S +S + +WS +F++P++
Sbjct: 917 TPHSHQFPRTRKMFDKGPEQTADDADDAAGHKSFISATV---QTGFCDWSARYFAQPVMK 973
Query: 990 AADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRF----EKGTKTAL-LQ 1044
++ + R+ERE L + ++ +R + + I D + G + +
Sbjct: 974 IPEEHDLESQIRKEREWRFLRN-SRVRRQAQQVIQKGITRLDDQIFLNRNPGVPSVVKFH 1032
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104
PF+P + AD++ I W++E+ L+ F N + ++ + +N D SLLL A+ +G
Sbjct: 1033 PFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDG 1091
Query: 1105 NIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163
IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G L +SG+V + +WD
Sbjct: 1092 AIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGLLMSSGDVRIVRIWD 1151
Query: 1164 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1223
++E + V IP+ +D +++L+ H + AG DGS+R+YD R + C +
Sbjct: 1152 TDREMK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDRRMA-LSECRVMTYR 1208
Query: 1224 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283
+ VV S Q D IVS S GD++ D R ++ + +G L+AL +H A
Sbjct: 1209 EHTAWVVKASLQKRPD-GHIVSVSVNGDVRIFDPR-MPESVNVLQIVKG-LTALDIHPQA 1265
Query: 1284 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343
+IA GS Q +++ GE + I+Y+ FM Q++G+++CL FHP+ LA GS D
Sbjct: 1266 DLIACGSVNQFTAIYNSSGELINNIKYYD-GFMGQRVGAISCLAFHPHWPHLAVGSNDYY 1324
Query: 1344 VSIHS 1348
+S++S
Sbjct: 1325 ISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Homo sapiens (taxid: 9606) |
| >sp|Q8K4Q0|RPTOR_MOUSE Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/1341 (41%), Positives = 766/1341 (57%), Gaps = 140/1341 (10%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L + PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL-------SDPHPLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +++DGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-RVGNEAVVRDGRVSTSSPLANAG 792
+ + + N LPS A T GS+ + P T R+ + + + R T++ N
Sbjct: 685 FMEEEKNY---PLPSPA---ATEGGSLTPVRDSPCTPRLRSVSSYGNIRAVTTARNLNKS 738
Query: 793 LMHGSPLSDDSSQHSDSGILNDG------------------VSNGVVNHMRPKPLDSA-- 832
L + S L+++S N +S ++ MR SA
Sbjct: 739 LQNLS-LTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALN 797
Query: 833 ---------IYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 883
+Y+Q + LA DP P ++ L +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPDVSDLAMKVLNSIAYKATVNARPQRILDTSSLT 857
Query: 884 DPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL--------------- 928
A+PT G H+ +PP S L
Sbjct: 858 QSAPASPT--------------NKGMHMHQVGGSPPASSTSSCSLTNDVAKQTVSRDLPS 903
Query: 929 --PGMRRVCSLEFRPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIY 976
PG ++ PH PD D +G S + +
Sbjct: 904 SRPGTAGPTGAQYTPHSHQFPRTRKMFDKGPDQTTDDADDAAGHKSFICASM---QTGFC 960
Query: 977 NWSCGHFSKPLLTAADDTEEILARREERE-KFALEHIAKCQ-----RSSVSKLNNPIACW 1030
+WS +F++ ++ ++ + R+ERE +F + Q + +++L++ I +
Sbjct: 961 DWSARYFAQAVMKIPEEHDLESQIRKEREWRFLRNTRVRKQAQQVIQKGITRLDDQI--F 1018
Query: 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN 1090
R PF+P + AD++ I W++E+ L+ F N + ++ + +N
Sbjct: 1019 LNRNPGVPSVVKFHPFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLN 1077
Query: 1091 ELDVSLLLVASCNGNIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149
D SLLL A+ +G IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G
Sbjct: 1078 GQDCSLLLTATDDGAIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGL 1137
Query: 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
L +SG+V + +WD ++E + V IP+ +D +++L+ H + AG DGS+R+YD
Sbjct: 1138 LMSSGDVRIVRIWDTDRETK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDR 1195
Query: 1210 RTP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267
R + V + R HT V + G IVS S GD++F D R ++ +
Sbjct: 1196 RMALSECRVMTYREHTAWVVKAYLQKHPEG----HIVSVSVNGDVRFFDPR-MPESVNVM 1250
Query: 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1327
+G L+AL +H A +IA GS Q +++ GE + I+Y+ FM Q++G+++CL
Sbjct: 1251 QIVKG-LTALDIHPQANLIACGSMNQFTAIYNGNGELINNIKYYD-GFMGQRVGAISCLA 1308
Query: 1328 FHPYQVLLAAGSADACVSIHS 1348
FHP+ LA GS D +S++S
Sbjct: 1309 FHPHWPHLAVGSNDYYISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Mus musculus (taxid: 10090) |
| >sp|P87141|MIP1_SCHPO WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/767 (47%), Positives = 474/767 (61%), Gaps = 78/767 (10%)
Query: 21 LNDDCGSAHGDVDLRRD------SDTASSSYTNNASVTTITTTTTTS------------- 61
+ND G RR ++T S YT N+++ T T S
Sbjct: 1 MNDRISEVSGSSRARRSVLSYGTTETGSDRYTENSNIATENGVDTASSMIDGIQSGFPQP 60
Query: 62 -------------LAYLPQTVVL--CELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGC 106
+ L Q + + RH + + P+++ + WR ++R+KT
Sbjct: 61 RHGFEEEYNNAEYINMLEQVFYMYYTDKRHRGVISKKNAEPTET--IHDWRMRERLKTVS 118
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
AL++CLNI VDPPDVIK +P A+ ECWIDPFS+ KALE IGKNL QQYE R RY
Sbjct: 119 AALLVCLNIGVDPPDVIKPNPAAKYECWIDPFSLPASKALEAIGKNLQQQYETLSMRTRY 178
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
+ LDP ++EVKKLC RR AK ER+LFHYNGHGVP PTA+GEIW+FNK+YTQYIP+ +
Sbjct: 179 RHYLDPAIEEVKKLCIGQRRNAKEERILFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSL 238
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHDWGASNYSG---------STRDCILL 274
DL SWL P IYV+DCSAAG I+ N F E D A + S CI L
Sbjct: 239 YDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQNPNVLAMPSHTSCIQL 298
Query: 275 AACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDR 334
AAC ETLP + + PAD+FTSCLT+PI +++RW+ ++ L+ +++ KIPGR DR
Sbjct: 299 AACGPKETLPMNPDLPADLFTSCLTSPIEISVRWYVLQNPFPNKLNLNMLLKIPGRLQDR 358
Query: 335 RTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPI 394
RT LGELNWIFTA+TDTIAWNV P LF+RLFRQDL+VA+LFRNFLLAERIM +C P
Sbjct: 359 RTPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQ 418
Query: 395 SHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA----EYQPSPFFSEQLTAFEVWL 450
S P LPPTH H MW++WD+A + CLSQLP ++ + EY+ S FFSEQLTAFEVWL
Sbjct: 419 SSPELPPTHDHPMWNSWDLAIDNCLSQLPDMLDAESKGIAYEYKHSTFFSEQLTAFEVWL 478
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
G +KPP+QLP+VLQVLLSQ HR RAL+LL +FLD+G WAVDLALS+GIFPYVLKLL
Sbjct: 479 SQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSIGIFPYVLKLL 538
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD-SMEAYP-----EQRAM 564
Q+ EL+ +LVFIW +ILA+D SCQ DL+KD G+ YF++ L+ + +P E RAM
Sbjct: 539 QSPAIELKPVLVFIWARILAVDDSCQADLLKDNGYGYFVQILNPNSSIFPSSNISEHRAM 598
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+L+V G +GQ AC+ ++ CL HL + L QW CLC+ +LWE+
Sbjct: 599 CAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP-------DSLLRQWACLCISQLWEN 651
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684
++EA+ G R +A ++ + PEVRAS + + T L GF +
Sbjct: 652 YSEAKWSGTRDNAHVKLAEIIVDSVPEVRASVLTAFTTFL--GFPE-----------KTE 698
Query: 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIA 731
E + E I + L +SD SPLVR E+ + L+ F +K+ L +A
Sbjct: 699 EVVAVETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVA 745
|
Binds to and facilitates the functioning of the meiotic regulator mei2. May also be involved in conjugation by interacting with ste11. Essential for cell growth. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q55BR7|RPTOR_DICDI Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 345/470 (73%), Gaps = 21/470 (4%)
Query: 269 RDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIP 328
RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L + ++DKIP
Sbjct: 359 RDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGITADMLDKIP 417
Query: 329 GRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRS 388
G + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+LLAERIMRS
Sbjct: 418 GNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNYLLAERIMRS 477
Query: 389 ANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEV 448
ANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF+EQLTAFEV
Sbjct: 478 ANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFFTEQLTAFEV 537
Query: 449 WLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLK 508
WL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL VGIFPYVLK
Sbjct: 538 WLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALCVGIFPYVLK 597
Query: 509 LLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFV 568
LLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S + +QR M+AFV
Sbjct: 598 LLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPADQRTMSAFV 657
Query: 569 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628
L+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+ K+WE+F EA
Sbjct: 658 LSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMAKMWENFEEA 710
Query: 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIR 688
+ + +A LL++ PEVRASAV +LG L+ G EG E ++
Sbjct: 711 KWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI--------GGAEGSE-----QRTN 757
Query: 689 AEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQ 738
E+++ +L + +D SP+VR E+ ++L+R ++ + +A ++ +
Sbjct: 758 IELNLALTLAVITADCSPMVRKELVISLSRIVSSYESNFVQVAQEIAQEE 807
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38873|KOG1_YEAST Target of rapamycin complex 1 subunit KOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KOG1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 235/367 (64%), Gaps = 37/367 (10%)
Query: 93 VSKWR-PKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMA-PQKALETIG 150
++ W+ KDR KT AL+LCLN+ VDPPDV+K PCAR+E W+DP + +KA+E IG
Sbjct: 70 ITDWKIMKDRQKTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIG 129
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
KNL QYE R RYK LDP V++VK+ CN+ RR +K +R+LFHYNGHGVPKPT +GE
Sbjct: 130 KNLQAQYETLSLRTRYKQSLDPCVEDVKRFCNSLRRTSKEDRILFHYNGHGVPKPTKSGE 189
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL------------HD 258
IW+FN+ YTQYIP+ + DL +WL P I+V+DC++A I+ F + HD
Sbjct: 190 IWVFNRGYTQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRIKDDEEGNHD 249
Query: 259 WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHES 318
A + + + +DC LA+C + E L S E PAD+F+ CLT PI +++R F +S L +S
Sbjct: 250 VAAPSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIFLMQSPLKDS 309
Query: 319 LDYSLID----------------------KIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
+ IPG +DRRT LGELNWIFTA+TDTIAW
Sbjct: 310 KYKIFFENSTSNQPFGDSKNSFKSKIPNVNIPGMLSDRRTPLGELNWIFTAITDTIAWTS 369
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPT-HQHHMWDAWDMAA 415
LP LF++LFR DL++A+LFRNFLLA+RIM NC P+S P LP + H MW +WD+A
Sbjct: 370 LPRPLFKKLFRHDLMIAALFRNFLLAKRIMPWYNCHPVSDPELPDSITTHPMWKSWDLAM 429
Query: 416 EICLSQL 422
+ L+++
Sbjct: 430 DEVLTKI 436
|
Component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. KOG1 may have a role in binding and recruiting substrates of TORC1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
Query: 97 RPKDR-MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155
+PK+ MKTGCVALVLCLNISVDPPDVIKISPC R ECWIDPFSMA KALETIGK L
Sbjct: 356 QPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHS 415
Query: 156 QYERWQPRARYKVQLDPTVDEV 177
QYERWQP+ARYK+QLDPT++EV
Sbjct: 416 QYERWQPKARYKLQLDPTLEEV 437
|
Binds double-stranded RNA. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1348 | ||||||
| 359481183 | 1363 | PREDICTED: regulatory-associated protein | 0.989 | 0.978 | 0.840 | 0.0 | |
| 224140567 | 1366 | predicted protein [Populus trichocarpa] | 0.991 | 0.978 | 0.817 | 0.0 | |
| 359481185 | 1370 | PREDICTED: regulatory-associated protein | 0.988 | 0.972 | 0.828 | 0.0 | |
| 224091088 | 1377 | predicted protein [Populus trichocarpa] | 0.992 | 0.971 | 0.823 | 0.0 | |
| 449464424 | 1362 | PREDICTED: regulatory-associated protein | 0.988 | 0.978 | 0.831 | 0.0 | |
| 356530199 | 1373 | PREDICTED: regulatory-associated protein | 0.981 | 0.963 | 0.809 | 0.0 | |
| 356566757 | 1365 | PREDICTED: regulatory-associated protein | 0.981 | 0.969 | 0.806 | 0.0 | |
| 357506523 | 1430 | Regulatory-associated protein of mTOR [M | 0.982 | 0.926 | 0.752 | 0.0 | |
| 18398267 | 1344 | regulatory associated protein of mTOR [A | 0.986 | 0.989 | 0.790 | 0.0 | |
| 297833636 | 1344 | RAPTOR1B [Arabidopsis lyrata subsp. lyra | 0.985 | 0.988 | 0.791 | 0.0 |
| >gi|359481183|ref|XP_003632587.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 1 [Vitis vinifera] gi|297735579|emb|CBI18073.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2284 bits (5919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1370 (84%), Positives = 1228/1370 (89%), Gaps = 36/1370 (2%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVP---LLSEPQPE 651
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APAIY P LLSEPQPE
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAIYAPLLSLLSEPQPE 650
Query: 652 VRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAE 711
VRASAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAE
Sbjct: 651 VRASAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAE 710
Query: 712 VAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSI 760
VAVAL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSI
Sbjct: 711 VAVALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSI 769
Query: 761 VSSQIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSN 818
V +GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSN
Sbjct: 770 VPP-VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSN 828
Query: 819 GVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGN 878
G+VNH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G
Sbjct: 829 GIVNHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGT 888
Query: 879 TSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLE 938
+ RP +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLE
Sbjct: 889 SVRPAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLE 948
Query: 939 FRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL 998
FRPH +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEIL
Sbjct: 949 FRPHQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEIL 1008
Query: 999 ARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1058
ARREEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENER
Sbjct: 1009 ARREEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENER 1068
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
I+IWNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASC+GN+RIWKDY + +Q
Sbjct: 1069 IRIWNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCDGNVRIWKDYTLRGQQ 1128
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
KLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+V IPS S
Sbjct: 1129 KLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QLVYSIPSLS 1187
Query: 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238
D SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVVGI FQPGL
Sbjct: 1188 DSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVVGIGFQPGL 1247
Query: 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1298
DPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP+IASGSAKQ+IKVF
Sbjct: 1248 DPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAPLIASGSAKQIIKVF 1307
Query: 1299 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA VSI++
Sbjct: 1308 NLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALVSIYA 1356
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140567|ref|XP_002323654.1| predicted protein [Populus trichocarpa] gi|222868284|gb|EEF05415.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2258 bits (5850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1121/1371 (81%), Positives = 1209/1371 (88%), Gaps = 35/1371 (2%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGDVDLRRDSDTASSS-YTNNASVTTITT 56
MALGDL ASR S A++SNH + D RDSD AS+S Y + T T
Sbjct: 1 MALGDLTASRLSSQSSVALISNH--------YDDFPSNRDSDIASTSNYGGGNATTGSTA 52
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
TTTS+AYLPQ+ VL ELRHEAFEAS P+GPSDSG VSKWRPKDRMKTG VALVLCLNIS
Sbjct: 53 ATTTSMAYLPQSAVLSELRHEAFEASVPTGPSDSGPVSKWRPKDRMKTGYVALVLCLNIS 112
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCARMECWIDPFSMAPQKALETIGK+LS QYERWQP+ARYK+QLDPTVDE
Sbjct: 113 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSLSIQYERWQPKARYKIQLDPTVDE 172
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
VKKLCNTCR++AK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL+TP
Sbjct: 173 VKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLRTP 232
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAAGMIVNAF+ELHDW AS +GS +CILLAACEAHETLPQS+EFPADVFTS
Sbjct: 233 SIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCILLAACEAHETLPQSDEFPADVFTS 292
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 293 CLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 352
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 353 LPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLPS+V DPN+E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ HR
Sbjct: 413 ICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQSHR 472
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ
Sbjct: 473 FRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
VDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL+HL
Sbjct: 533 VDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLRHL 592
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+GS+P DAQTEPLFLQWLCLCLGKLWEDFTEAQ +G +ADAPAIY PLL PQPEVRASA
Sbjct: 593 RGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGLQADAPAIYAPLLLVPQPEVRASA 652
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
F+L TLLD+G D CRDGV GD+ECDDDEK+RAE+SIIRSLL+VVSDGSPLVRAEVAVAL
Sbjct: 653 AFALATLLDVGGDVCRDGVHGDDECDDDEKVRAEVSIIRSLLSVVSDGSPLVRAEVAVAL 712
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG-----------SIVSSQI 765
ARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSL HIK TGSG SIVSSQI
Sbjct: 713 ARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIKATGSGYINPNQHVPHASIVSSQI 772
Query: 766 GPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNH 823
GPLTRVG N +VVRDGRVSTSSPL AG+MHGSPLSDDSSQHS+SGILN VSNG VNH
Sbjct: 773 GPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLSDDSSQHSNSGILNGIVSNGAVNH 832
Query: 824 MRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTS--R 881
RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGR VLSIIGIEQVVTK V S G++ R
Sbjct: 833 SRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVLSIIGIEQVVTKSVNSAGSSGRPR 892
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
PGDP T++P PS+AG+ RSSSWFDMN GHLP FRTPPVSPPR S+L GMRRVCSL+FRP
Sbjct: 893 PGDPKTSSPYPSVAGMTRSSSWFDMNAGHLP--FRTPPVSPPRPSYLTGMRRVCSLDFRP 950
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
HL+N PDSGLADPLLGS S +ERSLLP STIY WSCGHFSKPLLT DDTEEIL RR
Sbjct: 951 HLMNFPDSGLADPLLGSVSSSGGTERSLLPQSTIYKWSCGHFSKPLLTVPDDTEEILVRR 1010
Query: 1002 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERI-- 1059
EEREK+ALEHIA CQ SS S L N IA DT+FE GTKTALLQPFSPIVVAADENERI
Sbjct: 1011 EEREKYALEHIATCQHSSGSNLKNRIANLDTKFETGTKTALLQPFSPIVVAADENERIRQ 1070
Query: 1060 --KIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117
++WNYEE LLN FDNHDFPDKGISKLCLVNELD SLLLVASC+GNIRIWKDY K
Sbjct: 1071 ASRVWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKDYTVYGK 1130
Query: 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177
QKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+++ IPSS
Sbjct: 1131 QKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLIHSIPSS 1189
Query: 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237
SDCS+SA++AS+VHGGQ AAGFVDGSV+LYDVR +MLVC++RPHT+ V RVVGI FQPG
Sbjct: 1190 SDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRPHTENVVRVVGIGFQPG 1249
Query: 1238 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1297
LDP KIVSASQAGD+QFLD+RN + YLTI AHRGSL+AL+VHRHAPIIASGSAKQ+IK+
Sbjct: 1250 LDPGKIVSASQAGDMQFLDMRNLMNPYLTIKAHRGSLTALSVHRHAPIIASGSAKQIIKL 1309
Query: 1298 FSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
FSL GEQL +I YH + M QKI V+CLTFHPYQVLLAAG+ DA SI++
Sbjct: 1310 FSLNGEQLDSITYHL-TIMGQKISPVSCLTFHPYQVLLAAGATDALFSIYA 1359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481185|ref|XP_003632588.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2254 bits (5840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1141/1378 (82%), Positives = 1221/1378 (88%), Gaps = 45/1378 (3%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APA ++ + +VRA
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAFFIS-NNAILFQVRA 649
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAV 714
SAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAEVAV
Sbjct: 650 SAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAEVAV 709
Query: 715 ALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVSS 763
AL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSIV
Sbjct: 710 ALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSIVPP 768
Query: 764 QIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVV 821
+GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSNG+V
Sbjct: 769 -VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSNGIV 827
Query: 822 NHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSR 881
NH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G + R
Sbjct: 828 NHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGTSVR 887
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
P +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLEFRP
Sbjct: 888 PAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLEFRP 947
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
H +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEILARR
Sbjct: 948 HQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEILARR 1007
Query: 1002 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKI 1061
EEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENERI+I
Sbjct: 1008 EEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENERIRI 1067
Query: 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----------GNIRIWK 1110
WNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASCN GN+RIWK
Sbjct: 1068 WNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCNFFLLSLHYVGDGNVRIWK 1127
Query: 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170
DY + +QKLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+
Sbjct: 1128 DYTLRGQQKLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QL 1186
Query: 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
V IPS SD SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVV
Sbjct: 1187 VYSIPSLSDSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVV 1246
Query: 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1290
GI FQPGLDPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP+IASGS
Sbjct: 1247 GIGFQPGLDPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAPLIASGS 1306
Query: 1291 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
AKQ+IKVF+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA VSI++
Sbjct: 1307 AKQIIKVFNLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALVSIYA 1363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091088|ref|XP_002309174.1| predicted protein [Populus trichocarpa] gi|222855150|gb|EEE92697.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2253 bits (5837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1137/1380 (82%), Positives = 1221/1380 (88%), Gaps = 42/1380 (3%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGD--VDL--------------RRDSDTA 41
MALGDLMASRFS A VSNH D S+H D +D+ R +
Sbjct: 1 MALGDLMASRFSSQSPVAFVSNHY-DHYPSSHEDDAIDVARRDDNNNSNNNRDRDSDTAS 59
Query: 42 SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDR 101
+S+Y + + T TTTTS AYLPQTVVLCELRHEAFEAS P+GPSDSGLVSKWRPKDR
Sbjct: 60 TSNYGGGNATASTTATTTTSTAYLPQTVVLCELRHEAFEASVPTGPSDSGLVSKWRPKDR 119
Query: 102 MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQ 161
MKTG VALVLCLNISVDPPDVIKISPCARMECW DP SMAPQKALETIGKNLS QYERWQ
Sbjct: 120 MKTGYVALVLCLNISVDPPDVIKISPCARMECWTDPLSMAPQKALETIGKNLSIQYERWQ 179
Query: 162 PRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 221
P+ARYKVQLDPTVDEVKKLCNTCR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQY
Sbjct: 180 PKARYKVQLDPTVDEVKKLCNTCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 239
Query: 222 IPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHE 281
IPLP+SDLDSWL+TPSIYVFDCSAAGMIVNAF+ELHDW AS +GSTRDCILLAACEAHE
Sbjct: 240 IPLPVSDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWNASGSAGSTRDCILLAACEAHE 299
Query: 282 TLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGEL 341
TLPQS+EFPADVFTSCLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGEL
Sbjct: 300 TLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGEL 359
Query: 342 NWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 401
NWIFTAVTDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP
Sbjct: 360 NWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 419
Query: 402 THQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPE 461
THQHHMWDAWDMAAEICLSQLPSLV DPNAE+QPSPFF+EQLTAFEVWLDHG EHKKPPE
Sbjct: 420 THQHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLTAFEVWLDHGFEHKKPPE 479
Query: 462 QLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQIL 521
QLPIVLQVLLSQCHRFRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQIL
Sbjct: 480 QLPIVLQVLLSQCHRFRALVLLGRFLDMGRWAVDLALSVGIFPYVLKLLQTTTPELRQIL 539
Query: 522 VFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581
VFIWTKILALDKSCQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQE
Sbjct: 540 VFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQE 599
Query: 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIY 641
ACI+AGLIHVCLKHLQGS+PND QTEPLFLQWLCLCLGKLWEDFTEAQ +G +AD+PAIY
Sbjct: 600 ACIKAGLIHVCLKHLQGSVPNDTQTEPLFLQWLCLCLGKLWEDFTEAQILGLQADSPAIY 659
Query: 642 VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVV 701
PLL EPQPEVRASA F+L TLLD+G D CRDG GD+E DDDEKIRAEISI+RSLL+ V
Sbjct: 660 APLLLEPQPEVRASAAFALATLLDVGGDVCRDGATGDDEFDDDEKIRAEISIVRSLLSAV 719
Query: 702 SDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG--- 758
SDGSPLVRAEVAVALARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSLAHIK TGSG
Sbjct: 720 SDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLSSLPSLAHIKATGSGHAN 779
Query: 759 --------SIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSD 808
SIVSSQ GPLTRVG++ +VVRDGR STSSP AG+MHGSPLSDDSS HSD
Sbjct: 780 PNQYVPHASIVSSQFGPLTRVGSDSPSVVRDGRASTSSP-TTAGIMHGSPLSDDSSLHSD 838
Query: 809 SGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQV 868
SGILND VSNG V H RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGRRVLSIIGIEQV
Sbjct: 839 SGILNDIVSNGEVLHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRRVLSIIGIEQV 898
Query: 869 VTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL 928
VTK V S G++ P T+ +PSLAGL RSSSWFDM+ GH+PL FRTPPVSPPR S+L
Sbjct: 899 VTKSVNSTGSSG----PKTS--SPSLAGLARSSSWFDMHAGHIPLTFRTPPVSPPRSSYL 952
Query: 929 PGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLL 988
GMRRVCSLEFRPHL+NSPDSGLADPLL S S +ERSLLP STIYNWSCGHFSKPLL
Sbjct: 953 TGMRRVCSLEFRPHLMNSPDSGLADPLLASVGSSGGTERSLLPQSTIYNWSCGHFSKPLL 1012
Query: 989 TAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSP 1048
T DDTEEIL RREEREKFALEHIA CQ SSVS LNN IA WDT+FE GTKTALLQPFSP
Sbjct: 1013 TTPDDTEEILVRREEREKFALEHIAMCQHSSVSNLNNRIASWDTKFETGTKTALLQPFSP 1072
Query: 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108
IVVAADENERI++WNYEE TLLN FDNHDFPD+G+SKLCLVNELD SLLLVASC+GNIRI
Sbjct: 1073 IVVAADENERIRVWNYEEATLLNGFDNHDFPDRGVSKLCLVNELDDSLLLVASCDGNIRI 1132
Query: 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168
WKDY K KQKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE
Sbjct: 1133 WKDYTVKGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE- 1191
Query: 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228
Q+++ IPSSSDCS+SA++ASQVHGGQ AGFVDGSV+LYDVRTP+MLVC+TRPHT+ VE+
Sbjct: 1192 QLIHSIPSSSDCSVSAMSASQVHGGQFTAGFVDGSVKLYDVRTPEMLVCATRPHTENVEK 1251
Query: 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288
VVGI F PGLDP KIVSASQAGD++FLD+RN++D YLTI AHRGSL+ALAVHRHAPIIAS
Sbjct: 1252 VVGIGFHPGLDPGKIVSASQAGDMKFLDMRNYRDPYLTIKAHRGSLTALAVHRHAPIIAS 1311
Query: 1289 GSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
GSAKQ+IK+FSL GE LG+IRYH + MAQKIG V+CLTFHPYQVLLAAG+ DA SI++
Sbjct: 1312 GSAKQIIKLFSLNGEPLGSIRYHL-TIMAQKIGPVSCLTFHPYQVLLAAGATDALFSIYA 1370
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464424|ref|XP_004149929.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] gi|449517611|ref|XP_004165839.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2246 bits (5820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1370 (83%), Positives = 1219/1370 (88%), Gaps = 37/1370 (2%)
Query: 1 MALGDLMASRFSQS--AVVSNHLNDDCGSAHGDVD-----LRRDSDTASSSYTNNASVTT 53
MALGDLMASR SQS AVVSNHL DDC S++ D D LRRDS+ ASSSY
Sbjct: 1 MALGDLMASRISQSSLAVVSNHL-DDCSSSNHDDDGDLISLRRDSEVASSSYA------N 53
Query: 54 ITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCL 113
TT T++ YLPQT+VLCELRH+AFEA P+GPSD+GLVSKWRPKDRMKTGCVALVLCL
Sbjct: 54 AAVTTATTMVYLPQTIVLCELRHDAFEACLPAGPSDTGLVSKWRPKDRMKTGCVALVLCL 113
Query: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPT 173
NISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYERWQPRARYKVQLDPT
Sbjct: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERWQPRARYKVQLDPT 173
Query: 174 VDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL 233
V+EVKKLC+TCR+YAK ERVLFHYNGHGVPKPTA+GEIWLFNKSYTQYIPLPISDLDSWL
Sbjct: 174 VEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWL 233
Query: 234 KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADV 293
KTPSIYVFDCSAAGMIVNAF ELHD SGSTRDCILLAACE+HETLPQ EFPADV
Sbjct: 234 KTPSIYVFDCSAAGMIVNAFTELHD-----PSGSTRDCILLAACESHETLPQRAEFPADV 288
Query: 294 FTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIA 353
FTSCLTTPI MALRWFCKRSLL ESLD SLIDKIPGRQTDR+TLLGELNWIFTAVTDTIA
Sbjct: 289 FTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIA 348
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM
Sbjct: 349 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 408
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
AAEICLSQLP+LV DPN E+QPSPFF+EQLTAFEVWLDHGSE+KKPPEQLPIVLQVLLSQ
Sbjct: 409 AAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQ 468
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 533
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK
Sbjct: 469 GHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 528
Query: 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 593
SCQVDLVKDGGH YFIRFLDS+EA+PEQRAMAAFVLAVIVDGHRRGQEACIEA LIHVCL
Sbjct: 529 SCQVDLVKDGGHTYFIRFLDSLEAFPEQRAMAAFVLAVIVDGHRRGQEACIEANLIHVCL 588
Query: 594 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 653
KHLQ S PND QTEPLFLQWLCLCLGKLWED+ +AQ IG +ADAPA++ LL+EPQPEVR
Sbjct: 589 KHLQSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVFSSLLAEPQPEVR 648
Query: 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 713
ASA+F+LGTLLD+G DS RDGV D+ DDDEKIRAE SI+ SLL+VVSDGSPLVRAEVA
Sbjct: 649 ASAIFALGTLLDVGNDSSRDGVVDDDC-DDDEKIRAETSIVGSLLSVVSDGSPLVRAEVA 707
Query: 714 VALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVS 762
VALARFAFGH +HLKSIAAAY KP NSLL SLPSLAHI+++G+ GSIVS
Sbjct: 708 VALARFAFGHNKHLKSIAAAYWKPHCNSLLSSLPSLAHIRSSGNAYTNSNQHMPHGSIVS 767
Query: 763 SQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILN-DGVSNG 819
SQIGPL R GNE +VRDGRVSTSSPLAN G+MHGSPLSDDSSQHSDSG+L+ D VSNG
Sbjct: 768 SQIGPLLRFGNENSTLVRDGRVSTSSPLANTGMMHGSPLSDDSSQHSDSGVLHEDVVSNG 827
Query: 820 VVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNT 879
VNH RPKPL++A+YSQCVL MC LA DPSPRIA+LGRRVLSIIGIEQVVTKPV + +
Sbjct: 828 TVNHSRPKPLNNALYSQCVLTMCALANDPSPRIASLGRRVLSIIGIEQVVTKPVKASSSG 887
Query: 880 SRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 939
+P D T ++ PS AGL RSSSWFDMNGGHLPL FRTPPVSPPR S+L GMRRVCSLEF
Sbjct: 888 LKPTDGTASSQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEF 947
Query: 940 RPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILA 999
RP L+NSPDSGLADPL GSG S SERS LP STIYNWSCGHFSKPLLT ADD EEI
Sbjct: 948 RPQLMNSPDSGLADPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTVADDGEEIFT 1007
Query: 1000 RREEREKFALEHIAKCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1058
RREEREKFALE IAKCQ S VSKL NNPIA WDT+FE GTKT LLQPFSPIVVAADENER
Sbjct: 1008 RREEREKFALERIAKCQHSPVSKLNNNPIASWDTKFEMGTKTLLLQPFSPIVVAADENER 1067
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
I++WNYEE LLNSFDNHDFPDKGISKLCLVNELD SLLL ASC+GNIRIWKDY K KQ
Sbjct: 1068 IRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGNIRIWKDYTLKGKQ 1127
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
KLVTAFS+IQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+V IPSSS
Sbjct: 1128 KLVTAFSAIQGHKPGVRSINAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLVKSIPSSS 1186
Query: 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238
DCSISAL+ASQVHGGQLAAGF DGSV+LYD R P+MLVC+ RPH Q+VE+VVGI FQPGL
Sbjct: 1187 DCSISALSASQVHGGQLAAGFFDGSVKLYDARIPEMLVCTMRPHVQKVEKVVGIGFQPGL 1246
Query: 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1298
D +KIVSASQAGDIQFLDIRN +D YLTIDAHRGSL+ALAVHRHAPI+ASGSAKQLIKVF
Sbjct: 1247 DSSKIVSASQAGDIQFLDIRNQRDRYLTIDAHRGSLTALAVHRHAPILASGSAKQLIKVF 1306
Query: 1299 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
SL+G+QLGTIRY HP+FM QKIGSV+CLTFHPY+VLLAAG+ADACVSI++
Sbjct: 1307 SLDGDQLGTIRY-HPTFMPQKIGSVSCLTFHPYEVLLAAGAADACVSIYA 1355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530199|ref|XP_003533671.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2219 bits (5751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1126/1391 (80%), Positives = 1212/1391 (87%), Gaps = 68/1391 (4%)
Query: 1 MALGDLMASRFSQSAVV-----SNHLND------------------DCGSAHGDVDL--R 35
MALGDLMASRFSQS V+ NHL+D + S++ D D R
Sbjct: 1 MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHR 60
Query: 36 RDSDTA-----SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDS 90
RDS+ A S +Y NA+ TS+AYLP TVVLCELRH+AFEA+ P+GPSDS
Sbjct: 61 RDSEAAIAIISSGNYAGNAA---------TSMAYLPHTVVLCELRHDAFEAAVPAGPSDS 111
Query: 91 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIG 150
GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IG
Sbjct: 112 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIG 171
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
K LS QYERWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGE
Sbjct: 172 KTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGE 231
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRD 270
IW+FNKSYTQYIPLPI++LDSWLKTPSIYVFDCSAAGMIVN+FIELH+W ASN S S RD
Sbjct: 232 IWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRD 291
Query: 271 CILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGR 330
CILLAACEAHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGR
Sbjct: 292 CILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGR 351
Query: 331 QTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 390
DR+TLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN
Sbjct: 352 PNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 411
Query: 391 CSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWL 450
CSP+SHPMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWL
Sbjct: 412 CSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWL 471
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL
Sbjct: 472 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 531
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLA 570
QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLA
Sbjct: 532 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLA 591
Query: 571 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQT 630
VIVDGHRRGQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQT
Sbjct: 592 VIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQT 651
Query: 631 IGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE 690
IG + DA I+ PLLSEPQPEVRASAVF+LGTLLD+GFDSCR V GDEECDDD+K RAE
Sbjct: 652 IGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCR-SVGGDEECDDDDKFRAE 710
Query: 691 ISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLA 750
+SI++S+L V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL
Sbjct: 711 VSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLT 770
Query: 751 HIKTTGS-----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGS 797
+IK + GSIVS QIGP+ RVGN+ VVRDGRVS+SSPLA +G+MHGS
Sbjct: 771 NIKGSVGGYAKQNQHMPHGSIVSPQIGPI-RVGNDNSPVVRDGRVSSSSPLAGSGIMHGS 829
Query: 798 PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGR 857
PLSDDSS HSDSGILNDG SNGV NH PKP D+A+YSQCVLAMCTLAKDPSPRIA LGR
Sbjct: 830 PLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGR 889
Query: 858 RVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRT 917
RVLSIIGIEQVV KP+ S G + +TA+P L RSSSWFDMNGGHLPL FRT
Sbjct: 890 RVLSIIGIEQVVAKPLKSSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRT 940
Query: 918 PPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYN 977
PPVSPPR S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+
Sbjct: 941 PPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYS 1000
Query: 978 WSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKG 1037
WSCGHFSKPLLTAADD+EE+ ARREEREKFALEHIAKCQ S+VS+L NPIA WD KG
Sbjct: 1001 WSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDI---KG 1057
Query: 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1097
T+TALLQPFSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLL
Sbjct: 1058 TQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLL 1117
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
L AS +GNIRIWKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+S
Sbjct: 1118 LAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEIS 1177
Query: 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1217
SIMLWD++KE Q+VN SSSDCS+SAL ASQVHGGQ AGF+DGSVRLYDVRTPDMLVC
Sbjct: 1178 SIMLWDVDKE-QLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVC 1236
Query: 1218 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1277
RPHTQ+VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHRGSL+AL
Sbjct: 1237 GLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTAL 1296
Query: 1278 AVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA 1337
AVHRHAPIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL FHPYQVLLAA
Sbjct: 1297 AVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLNFHPYQVLLAA 1355
Query: 1338 GSADACVSIHS 1348
G+ADACV I++
Sbjct: 1356 GAADACVCIYA 1366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566757|ref|XP_003551595.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2189 bits (5672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1383 (80%), Positives = 1200/1383 (86%), Gaps = 60/1383 (4%)
Query: 1 MALGDLMASRFSQSAV-----VSNHLNDDCGSA----------HGDVDL--RRDSDTA-- 41
MALGDLMAS SQS V + +HL+D SA + D D RRDS+ A
Sbjct: 1 MALGDLMASHLSQSTVLVVPSIHSHLDDSTTSAAVAAVNNSSSNDDADFAHRRDSEAAIS 60
Query: 42 ---SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRP 98
S +Y NA+ TS+AYLP TV LCELRH+AFEA+ P+GPSDSGLVSKWRP
Sbjct: 61 SSSSGNYAGNAA---------TSMAYLPHTVFLCELRHDAFEAAVPAGPSDSGLVSKWRP 111
Query: 99 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYE 158
KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYE
Sbjct: 112 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYE 171
Query: 159 RWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSY 218
RWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSY
Sbjct: 172 RWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSY 231
Query: 219 TQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACE 278
TQYIPLPIS+LDSWLKTPSIYV DCSAAGMIVN FIELH+W SN S S RDCILLAACE
Sbjct: 232 TQYIPLPISELDSWLKTPSIYVIDCSAAGMIVNFFIELHEWSPSNSSVSQRDCILLAACE 291
Query: 279 AHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLL 338
AHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESL SLIDKIPGR DR+TLL
Sbjct: 292 AHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLVNSLIDKIPGRPNDRKTLL 351
Query: 339 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPM 398
GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSP+SHPM
Sbjct: 352 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPM 411
Query: 399 LPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKK 458
LPPTHQHHMWDAWDMAAE+CLSQLPSLV DPN+E+Q S FF+EQLTAFEVWLDHGSEHKK
Sbjct: 412 LPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNSEFQRSTFFTEQLTAFEVWLDHGSEHKK 471
Query: 459 PPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518
PPEQLPIVLQVL SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR
Sbjct: 472 PPEQLPIVLQVLHSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 531
Query: 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578
QILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLAVIVDGHRR
Sbjct: 532 QILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRR 591
Query: 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638
GQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQTIG + DA
Sbjct: 592 GQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDAT 651
Query: 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698
I+ PLLSEPQPEVRASAVF+LGT+LD+GFDSCR V GDEECDDD+K RAE+SI++S+L
Sbjct: 652 TIFAPLLSEPQPEVRASAVFALGTILDVGFDSCR-SVGGDEECDDDDKFRAEVSIVKSML 710
Query: 699 TVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS- 757
V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSLA+IK +
Sbjct: 711 GVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLANIKGSVGG 770
Query: 758 ----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQ 805
GSIVS QIGP+ RVGN+ V+RDGRVS+SSPLA +G+MHGSPLSDDSS
Sbjct: 771 YAKQNQHMPYGSIVSPQIGPI-RVGNDNSPVIRDGRVSSSSPLAGSGIMHGSPLSDDSSH 829
Query: 806 HSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGI 865
HSDSGILNDG SNGVVNH PKPLD+A+YSQCVLAMCTLAKDPSPRIA LGRRVLSIIGI
Sbjct: 830 HSDSGILNDGFSNGVVNHTGPKPLDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGI 889
Query: 866 EQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQ 925
EQVV KP+ G + +TA+P L RSSSWFDMNGGHLPL FRTPPVSPPR
Sbjct: 890 EQVVAKPLKFSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRTPPVSPPRP 940
Query: 926 SFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSK 985
S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+WSCGHFSK
Sbjct: 941 SYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSK 1000
Query: 986 PLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQP 1045
PLLTAADD+EE ARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+TALLQP
Sbjct: 1001 PLLTAADDSEEASARREEREKFALEHIGKCQHSAVSRLINPIAKWDI---KGTQTALLQP 1057
Query: 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105
FSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS +GN
Sbjct: 1058 FSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASSDGN 1117
Query: 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1165
IRIWKDY K KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+SSIMLWD++
Sbjct: 1118 IRIWKDYTLKGKQKLVTAFSSIHGHKPGVRSLNAVVDWQQQCGYLYASGEISSIMLWDVD 1177
Query: 1166 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225
KE Q+VN SSSDCS+S L ASQVHGGQ AAGFVDGSVRLYDVRTPDMLVC RPHTQ+
Sbjct: 1178 KE-QLVNSKSSSSDCSVSVLAASQVHGGQFAAGFVDGSVRLYDVRTPDMLVCGLRPHTQR 1236
Query: 1226 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285
VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHRGSL+ALAVHRHAPI
Sbjct: 1237 VEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRHAPI 1296
Query: 1286 IASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1345
IASGSAKQ IKVFSLEG+QLGTI+Y +P+ MAQKIGSV+CL FHPYQVLLAAG+ADACV
Sbjct: 1297 IASGSAKQFIKVFSLEGDQLGTIKY-YPTLMAQKIGSVSCLNFHPYQVLLAAGAADACVC 1355
Query: 1346 IHS 1348
I++
Sbjct: 1356 IYA 1358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506523|ref|XP_003623550.1| Regulatory-associated protein of mTOR [Medicago truncatula] gi|355498565|gb|AES79768.1| Regulatory-associated protein of mTOR [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2142 bits (5550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1446 (75%), Positives = 1190/1446 (82%), Gaps = 121/1446 (8%)
Query: 1 MALGDLMASRFSQSAV--VSNH----------------------LNDDCGSAHGDVDLRR 36
MALGDLMASRFSQS V V NH LNDD + V RR
Sbjct: 1 MALGDLMASRFSQSTVLIVPNHHRDDSTSTTAFSASASSASAAALNDDGSDFNSSVPNRR 60
Query: 37 DSDTASSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKW 96
DS+ ++S +S + T++ YLPQT ELRH+AFE P+GPSDSGLVSKW
Sbjct: 61 DSEFGAAS----SSSAGVYGNAATTMVYLPQTSFFNELRHDAFELELPTGPSDSGLVSKW 116
Query: 97 RPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQ 156
RPKDRMKTGCVALVLCLNI+VDPPDVIKISPCARMECWIDPFSMAPQKALE IGK+L+ Q
Sbjct: 117 RPKDRMKTGCVALVLCLNINVDPPDVIKISPCARMECWIDPFSMAPQKALELIGKSLTSQ 176
Query: 157 YERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK 216
YERWQP+ARYK QLDPT+DEVKKLC TCRRYAK ERVLFHYNGHGVPKPT NGE+W+FNK
Sbjct: 177 YERWQPKARYKCQLDPTLDEVKKLCTTCRRYAKSERVLFHYNGHGVPKPTHNGELWVFNK 236
Query: 217 SYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAA 276
SYTQYIPLP++DLDSWLKTPSIYVFDCSAAG +VNAFI+LH+W ASN GS RDCI+LAA
Sbjct: 237 SYTQYIPLPLNDLDSWLKTPSIYVFDCSAAGKVVNAFIQLHEWNASNSDGSPRDCIMLAA 296
Query: 277 CEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRT 336
CEAHETLPQS EFPADVFT+CLTTPI MALRWF RSLL +S DY LIDKIPGR DR+T
Sbjct: 297 CEAHETLPQSVEFPADVFTACLTTPIKMALRWFSTRSLLRDSFDYLLIDKIPGRPNDRKT 356
Query: 337 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISH 396
LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANC+P+SH
Sbjct: 357 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCTPVSH 416
Query: 397 PMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEH 456
PMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWLDHGSEH
Sbjct: 417 PMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEH 476
Query: 457 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-------------------- 496
KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL
Sbjct: 477 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLVISITIRQIFVQFLSIFSKT 536
Query: 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS---------------------- 534
ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 537 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSLLKYMNMLFFPSDLVQDKVRKV 596
Query: 535 -------------------CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDG 575
CQVDLVKDGGH YF++FLDS EAYPEQRAMAAFVLAVIVDG
Sbjct: 597 KDREYKKREINITGQYEVSCQVDLVKDGGHIYFMKFLDSSEAYPEQRAMAAFVLAVIVDG 656
Query: 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 635
HRRGQEACIEAGL HVCLKHL+ S PND+QTEPLFLQWLCLCLGKLWE+F E + IG +
Sbjct: 657 HRRGQEACIEAGLSHVCLKHLESSSPNDSQTEPLFLQWLCLCLGKLWEEFPEGKIIGLQG 716
Query: 636 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695
A +I PLLSEPQPEVRASAVF+LGTL+D+GFDSCR GDEECDDD+K RAE+SI+R
Sbjct: 717 HATSILAPLLSEPQPEVRASAVFALGTLVDVGFDSCRS--VGDEECDDDDKFRAEVSIVR 774
Query: 696 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTT 755
SLL+V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL +IK T
Sbjct: 775 SLLSVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQTNSLINSLPSLTNIKDT 834
Query: 756 GSG-----------SIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDD 802
G G SIVS QIGPL RVG N V+RDGRVS+SSPLA++G+MHGSPLSD+
Sbjct: 835 GGGYSKQNQHMAHGSIVSPQIGPL-RVGSDNSKVIRDGRVSSSSPLASSGIMHGSPLSDN 893
Query: 803 SSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSI 862
SS HSDSGILNDG SNGVVN PKPLD+A+YSQCVLAMCTLAKDPSPR+ LGRRVLSI
Sbjct: 894 SSHHSDSGILNDGFSNGVVNSFGPKPLDNALYSQCVLAMCTLAKDPSPRVGNLGRRVLSI 953
Query: 863 IGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSP 922
IGIEQVV KP+ +P T++ P A L RSSSWFDMNGGHLPL FRTPPVSP
Sbjct: 954 IGIEQVVAKPL-------KPSGVRTSSVVPVSASLARSSSWFDMNGGHLPLTFRTPPVSP 1006
Query: 923 PRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGH 982
PR S++ GMRRVCSLEFRPHL+ SPD+GLADPLLGSG +RSLLP S+IYNWSCGH
Sbjct: 1007 PRPSYIAGMRRVCSLEFRPHLMTSPDTGLADPLLGSG----TFDRSLLPQSSIYNWSCGH 1062
Query: 983 FSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTAL 1042
FSK LLTAADD+EE+LARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+T L
Sbjct: 1063 FSKSLLTAADDSEEVLARREEREKFALEHIVKCQHSAVSRLTNPIAKWDI---KGTQTLL 1119
Query: 1043 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
LQPFSPIVVAADENERI++WN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS
Sbjct: 1120 LQPFSPIVVAADENERIRVWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASS 1179
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162
+GN+R+WKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE S IM+W
Sbjct: 1180 DGNVRVWKDYSLRGKQKLVTAFSSIHGHKPGVRSPNAVVDWQQQCGYLYASGETSLIMMW 1239
Query: 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222
DL+KEQ +VN IPSSS+CS+SAL ASQVHGGQ AAGFVDGSVRLYD RTP+MLVC RPH
Sbjct: 1240 DLDKEQ-LVNTIPSSSECSVSALAASQVHGGQFAAGFVDGSVRLYDARTPEMLVCGLRPH 1298
Query: 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1282
TQ+VE+V+GI FQPGLDP K+VSASQAGDIQFLDIRNH AYLTI+AHRGSL+ALAVHRH
Sbjct: 1299 TQRVEKVMGIGFQPGLDPGKLVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRH 1358
Query: 1283 APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342
APIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL+FHPYQ+LLAAG+ADA
Sbjct: 1359 APIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLSFHPYQLLLAAGAADA 1417
Query: 1343 CVSIHS 1348
CV I++
Sbjct: 1418 CVCIYA 1423
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398267|ref|NP_566335.1| regulatory associated protein of mTOR [Arabidopsis thaliana] gi|75331762|sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gi|16648937|gb|AAL24320.1| Unknown protein [Arabidopsis thaliana] gi|31711792|gb|AAP68252.1| At3g08850 [Arabidopsis thaliana] gi|56266687|gb|AAV84960.1| raptor1B [Arabidopsis thaliana] gi|332641166|gb|AEE74687.1| regulatory associated protein of mTOR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2098 bits (5437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1071/1355 (79%), Positives = 1181/1355 (87%), Gaps = 25/1355 (1%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRY-YP 1302
Query: 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833636|ref|XP_002884700.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] gi|297330540|gb|EFH60959.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2094 bits (5426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1073/1356 (79%), Positives = 1181/1356 (87%), Gaps = 27/1356 (1%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIALVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHD G+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDMGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLS LP LV DP E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSHLPQLVLDPTVEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL++SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLSSPDSGLADP 949
Query: 955 LLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIA 1013
LLG SG SERSLLP STIY+WSCGHFSKPLL AD ++EI A+REE+EKFALEHIA
Sbjct: 950 LLGVSG-----SERSLLPLSTIYSWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIA 1004
Query: 1014 KCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS 1072
KCQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN
Sbjct: 1005 KCQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNG 1064
Query: 1073 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132
FDNHDFPDKGISKLCLVNELD S LLVASC+G++RIWK+Y K KQKLVT FSSIQGHKP
Sbjct: 1065 FDNHDFPDKGISKLCLVNELDDSQLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKP 1124
Query: 1133 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192
G R N VVDWQQQSGYLYASGEVS++ LWDLEKE Q+V IPS S+C ++AL+ASQVHG
Sbjct: 1125 GARDLNAVVDWQQQSGYLYASGEVSTVTLWDLEKE-QLVRSIPSESECGVTALSASQVHG 1183
Query: 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1252
GQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDI
Sbjct: 1184 GQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDI 1242
Query: 1253 QFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHH 1312
QFLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +
Sbjct: 1243 QFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGRIRY-Y 1301
Query: 1313 PSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
PSFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1302 PSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1348 | ||||||
| TAIR|locus:2097633 | 1344 | RAPTOR1 "AT3G08850" [Arabidops | 0.986 | 0.989 | 0.773 | 0.0 | |
| RGD|1311784 | 1345 | Rptor "regulatory associated p | 0.287 | 0.287 | 0.607 | 3.2e-262 | |
| DICTYBASE|DDB_G0270398 | 1509 | raptor "Raptor family protein" | 0.294 | 0.263 | 0.639 | 7.4e-262 | |
| FB|FBgn0029840 | 1624 | raptor "raptor" [Drosophila me | 0.290 | 0.241 | 0.578 | 8.8e-225 | |
| POMBASE|SPAC57A7.11 | 1313 | mip1 "WD repeat protein, Rapto | 0.431 | 0.442 | 0.524 | 4.2e-216 | |
| UNIPROTKB|Q2KFQ3 | 1582 | MGCH7_ch7g632 "Putative unchar | 0.453 | 0.386 | 0.479 | 1.9e-192 | |
| ASPGD|ASPL0000073481 | 1431 | AN4639 [Emericella nidulans (t | 0.382 | 0.360 | 0.524 | 2e-188 | |
| UNIPROTKB|Q8N122 | 1335 | RPTOR "Regulatory-associated p | 0.289 | 0.292 | 0.63 | 5.2e-186 | |
| UNIPROTKB|F1MG06 | 1335 | RPTOR "Uncharacterized protein | 0.289 | 0.292 | 0.63 | 9.7e-185 | |
| MGI|MGI:1921620 | 1335 | Rptor "regulatory associated p | 0.289 | 0.292 | 0.632 | 1.4e-183 |
| TAIR|locus:2097633 RAPTOR1 "AT3G08850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5377 (1897.9 bits), Expect = 0., P = 0.
Identities = 1048/1355 (77%), Positives = 1155/1355 (85%)
Query: 1 MALGDLMASRFSQSAV--VSNHLND-DCGSAHGDVDLRR-DSDTASSSYTNNASVXXXXX 56
MALGDLM SRFSQS+V VSNH D DC S+H D D RR DS+ SSS N +
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNGTTEGAAT 60
Query: 57 XXXXSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
S+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 61 AT--SMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSPXXXXXXXXXX 716
VF+LGTLLDIGFDS + KIRAE +II+SLL VVSDGSP
Sbjct: 659 VFALGTLLDIGFDSNKSVVEDEFDDDE--KIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 XXXXXGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
GHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S SSPL ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRIS-SSPLGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKLNN PIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKEQ +V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQ-LVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY+ P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRYY-P 1302
Query: 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
|
| RGD|1311784 Rptor "regulatory associated protein of MTOR, complex 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 3.2e-262, Sum P(3) = 3.2e-262
Identities = 251/413 (60%), Positives = 304/413 (73%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR---SLLHE-SLDYS 322
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + SL+ +LD
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 323 -----------LIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLL 371
++ +IPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLL
Sbjct: 296 ENSPGSTNANIILSRIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLL 355
Query: 372 VASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA 431
VASLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A
Sbjct: 356 VASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA 415
Query: 432 EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGP 491
++ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GP
Sbjct: 416 -FRHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGP 474
Query: 492 WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF 551
WA ALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+
Sbjct: 475 WA---ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSV 531
Query: 552 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611
L E R M AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL
Sbjct: 532 LADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLR 584
Query: 612 QWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
QW+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 585 QWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 637
|
|
| DICTYBASE|DDB_G0270398 raptor "Raptor family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 7.4e-262, Sum P(4) = 7.4e-262
Identities = 259/405 (63%), Positives = 315/405 (77%)
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
G+S+ S RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L +
Sbjct: 350 GSSSSSSHQRDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGI 408
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
++DKIPG + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+
Sbjct: 409 TADMLDKIPGNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNY 468
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF
Sbjct: 469 LLAERIMRSANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFF 528
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL
Sbjct: 529 TEQLTAFEVWLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALC 588
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S +
Sbjct: 589 VGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPA 648
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
+QR M+AFVL+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+
Sbjct: 649 DQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMA 701
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
K+WE+F EA+ + +A LL++ PEVRASAV +LG L+
Sbjct: 702 KMWENFEEAKWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI 746
|
|
| FB|FBgn0029840 raptor "raptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 8.8e-225, Sum P(6) = 8.8e-225
Identities = 235/406 (57%), Positives = 294/406 (72%)
Query: 262 SNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLH--ESL 319
+N S ++CI LAAC A+E LP + + PAD+FTSCLTTPI +AL+W+ + L +
Sbjct: 410 TNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRI 469
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
LIDKIPG+ DRRT++GELNWIFTA+TDTIAWN LP +LFQRLFRQDLLVASLFRNF
Sbjct: 470 QSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNF 529
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERI+RS +C+P+S P LPP ++H MW AWD+ ++ L QLP ++ D NA Y+ PFF
Sbjct: 530 LLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEIL-DHNAPYRQLPFF 588
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
QLTAF+VWLD SE + PPEQLPIVLQVLLSQ HR RAL LL RFLD+GPWAV+LAL
Sbjct: 589 EHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALG 648
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ++T ELR +LVFIW KILA+D SCQVDLVK+ + YF+ L
Sbjct: 649 VGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKE--YKYFLSVLQDTSVSK 706
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
E R ++AFVL+ IV GQ + ++ L+ +CL+ L ND L QWL +CLG
Sbjct: 707 EHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQL-----NDGSW--LLRQWLAICLG 759
Query: 620 KLWEDFTEAQTIGRRADA-PAIYVPLLSEPQPEVRASAVFSLGTLL 664
LW++F +A+ G R A +YV LL + PEVRA+AVF+LGT +
Sbjct: 760 MLWQNFEKARWSGARDLAHEKLYV-LLRDSIPEVRAAAVFALGTFI 804
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| POMBASE|SPAC57A7.11 mip1 "WD repeat protein, Raptor homolog Mip1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 4.2e-216, Sum P(4) = 4.2e-216
Identities = 324/618 (52%), Positives = 413/618 (66%)
Query: 75 RHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECW 134
RH + + P+++ + WR ++R+KT AL++CLNI VDPPDVIK +P A+ ECW
Sbjct: 89 RHRGVISKKNAEPTET--IHDWRMRERLKTVSAALLVCLNIGVDPPDVIKPNPAAKYECW 146
Query: 135 IDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVL 194
IDPFS+ KALE IGKNL QQYE R RY+ LDP ++EVKKLC RR AK ER+L
Sbjct: 147 IDPFSLPASKALEAIGKNLQQQYETLSMRTRYRHYLDPAIEEVKKLCIGQRRNAKEERIL 206
Query: 195 FHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---N 251
FHYNGHGVP PTA+GEIW+FNK+YTQYIP+ + DL SWL P IYV+DCSAAG I+ N
Sbjct: 207 FHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFN 266
Query: 252 AFIELHDWGASNYSG---------STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302
F E D A + S CI LAAC ETLP + + PAD+FTSCLT+PI
Sbjct: 267 RFAEQRDKEALRIAKQNPNVLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLTSPI 326
Query: 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLF 362
+++RW+ ++ L+ +++ KIPGR DRRT LGELNWIFTA+TDTIAWNV P LF
Sbjct: 327 EISVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELNWIFTAITDTIAWNVFPKHLF 386
Query: 363 QRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQL 422
+RLFRQDL+VA+LFRNFLLAERIM +C P S P LPPTH H MW++WD+A + CLSQL
Sbjct: 387 RRLFRQDLMVAALFRNFLLAERIMLVHSCHPQSSPELPPTHDHPMWNSWDLAIDNCLSQL 446
Query: 423 PSLV-ADPNA---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFR 478
P ++ A+ EY+ S FFSEQLTAFEVWL G +KPP+QLP+VLQVLLSQ HR R
Sbjct: 447 PDMLDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLR 506
Query: 479 ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538
AL+LL +FLD+G WAVDLALS+GIFPYVLKLLQ+ EL+ +LVFIW +ILA+D SCQ D
Sbjct: 507 ALILLSKFLDLGVWAVDLALSIGIFPYVLKLLQSPAIELKPVLVFIWARILAVDDSCQAD 566
Query: 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA---GLIH---VC 592
L+KD G+ YF++ L+ P + F + I + HR + G C
Sbjct: 567 LLKDNGYGYFVQILN-----PNS---SIFPSSNISE-HRAMCAFILSVFCRGFPQGQLAC 617
Query: 593 LKH--LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 650
L L + + + L QW CLC+ +LWE+++EA+ G R +A ++ + P
Sbjct: 618 LNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDSVP 677
Query: 651 EVRASAVFSLGTLLDIGF 668
EVRAS + + T L GF
Sbjct: 678 EVRASVLTAFTTFL--GF 693
|
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| UNIPROTKB|Q2KFQ3 MGCH7_ch7g632 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.9e-192, Sum P(2) = 1.9e-192
Identities = 314/655 (47%), Positives = 408/655 (62%)
Query: 73 ELRHEAFEASTPS-GPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARM 131
E RHE P P + + WR +DR+KT A+ +CLNI V+PPD +K +P A+M
Sbjct: 305 EKRHET--TGKPKLAPFE---IQDWRMRDRLKTVSAAIAVCLNIGVEPPDQLKTNPGAKM 359
Query: 132 ECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGE 191
E W DP QKALE IGK L QYE R RYK LDP+V++ KK C + R+ AK E
Sbjct: 360 EAWQDPTVTPAQKALENIGKALQSQYETLAMRTRYKQYLDPSVEDTKKFCLSLRKSAKDE 419
Query: 192 RVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVN 251
RVL HYNGHGVPKPT++GEIW+FNK+YTQYIP+ + DL WL+ P+I+V+DCS AG I++
Sbjct: 420 RVLLHYNGHGVPKPTSSGEIWVFNKNYTQYIPVSLYDLQHWLQAPTIFVWDCSEAGNILS 479
Query: 252 ---AFIELHDW--------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTT 300
F+E H+ ++Y + R I LAAC + + LP + PAD+FT CLTT
Sbjct: 480 NYHKFVEKHEKEEDEAVLRDPNHYKANFRPYIHLAACSSSQNLPTNPLLPADLFTCCLTT 539
Query: 301 PITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHD 360
PI MAL +F ++ L L K+PGR +RRT LGELNWIFTA+TDTIAW LP
Sbjct: 540 PIEMALWFFVLQNPLQTGLTPERAKKLPGRLQERRTPLGELNWIFTAITDTIAWTTLPRH 599
Query: 361 LFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS 420
LF++ FRQDL+VA+LFRNFLLA+R+M C+P S P LP T QH +W++WD+A + LS
Sbjct: 600 LFRKFFRQDLMVAALFRNFLLAQRVMSVYGCTPQSFPELPDTRQHPLWESWDLAVDQALS 659
Query: 421 QLPSLVADPNA----EYQPSPFFSEQLTAFEVWLDHGSE-HKKPPEQLPIVLQVLLSQCH 475
QLP L EYQ S FF+EQLTAF+V+L G +KPPEQLP+VLQVLLSQ H
Sbjct: 660 QLPMLERKETEGIEYEYQNSTFFTEQLTAFDVYLTRGDALQQKPPEQLPVVLQVLLSQQH 719
Query: 476 RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535
R RAL+LLGRFLD+GPWAV LALS+GI+PYVLKLLQ+ EL+ ++VFIWT++LA+D SC
Sbjct: 720 RVRALILLGRFLDLGPWAVQLALSIGIYPYVLKLLQSAAAELKPVMVFIWTRVLAVDTSC 779
Query: 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVL-AVIVDGHRRGQEACIEAGLIHVCLK 594
Q DL+KD G+ YF L E P + + A I+ +G + G + VC +
Sbjct: 780 QQDLIKDSGYQYFSNILKPSEGLPVANSDEHKAMCAFILAMLCKGYKP----GQV-VCNQ 834
Query: 595 -HLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPE 651
+ G E PL QW CLC+ +LW D EA+ G R +APA L + E
Sbjct: 835 TDIMGYCLYHILNEDNPLLRQWSCLCISQLWYDLPEAKWRGIRDNAPARLSILTKDGCSE 894
Query: 652 VRASAVFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSP 706
VRA+ ++++ T L I R E SI ++L + +DGSP
Sbjct: 895 VRAAVLYAMTTFLGIP-------------DLTDEVARIEESIAWTVLDMANDGSP 936
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| ASPGD|ASPL0000073481 AN4639 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 2.0e-188, Sum P(3) = 2.0e-188
Identities = 285/543 (52%), Positives = 366/543 (67%)
Query: 144 KALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVP 203
K +E IGK L +QYE R RYK LDP+VDE KK C + RR AK ERVLFHYNGHGVP
Sbjct: 236 KLMEQIGKKLQEQYETLSLRTRYKQYLDPSVDETKKFCVSLRRNAKDERVLFHYNGHGVP 295
Query: 204 KPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHD-- 258
PT +GEIW+FNK+YTQYIP+ + DL WL PS++VFD S AG IV + F+E H+
Sbjct: 296 LPTQSGEIWVFNKNYTQYIPVSLYDLQQWLAGPSLFVFDVSHAGNIVQNFHTFVEKHEKE 355
Query: 259 ------WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR 312
+ + DCI+LAAC+ +E+LP + + PAD+FT CLTTPI +ALR+F +
Sbjct: 356 NLEQKRLDPNAIVQNYGDCIILAACQKNESLPTNPDLPADLFTCCLTTPIEIALRYFILQ 415
Query: 313 SLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLV 372
+ L ++ ++PGR DRR+ LGELNWIFTA+TDTIAW LP LF++LFRQDL+V
Sbjct: 416 NPLQSNIRIDDF-RVPGRLQDRRSPLGELNWIFTAITDTIAWKTLPRALFKKLFRQDLMV 474
Query: 373 ASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA- 431
A+LFRNFLL+ERIMR+ C PIS P LP TH H +W +WD+A E+ L+QLP+L+
Sbjct: 475 AALFRNFLLSERIMRTYKCQPISSPELPETHNHPLWKSWDLAVEMVLAQLPALIDHEEGR 534
Query: 432 ---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLD 488
EYQ S FF+EQLTAFE++L G K PP+QLPIVLQVLLSQ HR RAL+LL +FLD
Sbjct: 535 RQYEYQHSTFFAEQLTAFEMYLSSGPTEKSPPDQLPIVLQVLLSQAHRLRALILLSKFLD 594
Query: 489 MGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548
+GPWAV LALS+GIFPYV+KLLQ+ EL+ ++VFIW +I+A+D + Q DL+KD G YF
Sbjct: 595 LGPWAVHLALSIGIFPYVVKLLQSAAQELKPVMVFIWARIMAVDHTVQNDLLKDNGIHYF 654
Query: 549 IRFLDSMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603
I L+ P E RAM AF++++ + +GQ C+ + L CL HL D
Sbjct: 655 ISILNPSSPIPVGNASEHRAMCAFIVSIFCKNYTQGQNVCLSSDLFESCLIHLM-----D 709
Query: 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663
+ PL QW CLC+ LW DF EA+ +G R AP L +P PEVRA+ + +L T
Sbjct: 710 VEN-PLLRQWSCLCISMLWSDFPEAKWMGIRCSAPMRLCELNFDPVPEVRAAMLHALMTF 768
Query: 664 LDI 666
L I
Sbjct: 769 LGI 771
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| UNIPROTKB|Q8N122 RPTOR "Regulatory-associated protein of mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 5.2e-186, Sum P(2) = 5.2e-186
Identities = 252/400 (63%), Positives = 301/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
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| UNIPROTKB|F1MG06 RPTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 9.7e-185, Sum P(2) = 9.7e-185
Identities = 252/400 (63%), Positives = 302/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLCSLLSDPIPEVRCAAVFALGTFV 627
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| MGI|MGI:1921620 Rptor "regulatory associated protein of MTOR, complex 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1300 (462.7 bits), Expect = 1.4e-183, Sum P(2) = 1.4e-183
Identities = 253/400 (63%), Positives = 303/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C7J8E5 | RTOR2_ORYSJ | No assigned EC number | 0.7144 | 0.8887 | 0.9835 | yes | no |
| Q9LZW9 | RTOR2_ARATH | No assigned EC number | 0.7254 | 0.9666 | 0.9752 | no | no |
| Q0IQN5 | RTOR1_ORYSJ | No assigned EC number | 0.6974 | 0.9829 | 0.9749 | yes | no |
| Q93YQ1 | RTOR1_ARATH | No assigned EC number | 0.7904 | 0.9866 | 0.9895 | yes | no |
| Q8K4Q0 | RPTOR_MOUSE | No assigned EC number | 0.4153 | 0.8909 | 0.8996 | yes | no |
| Q8N122 | RPTOR_HUMAN | No assigned EC number | 0.4233 | 0.9028 | 0.9116 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVI1235 | hypothetical protein (1366 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.4198.1 | SubName- Full=Putative uncharacterized protein; (2483 aa) | • | • | • | 0.848 | |||||
 | grail3.0004013701 | hypothetical protein (317 aa) | • | • | • | 0.643 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1348 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 39/305 (12%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104
P ++ + IK+W+ E LL + H P + ++ D + L S +
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-----DGTYLASGSSDK 73
Query: 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1164
IR+W D + + + T + GH V V + L +S +I +WD+
Sbjct: 74 TIRLW---DLETGECVRT----LTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDV 122
Query: 1165 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PH 1222
E + + + +D ++++ S G +A+ DG+++L+D+RT C H
Sbjct: 123 ETGKC-LTTLRGHTD-WVNSVAFSP-DGTFVASSSQDGTIKLWDLRT---GKCVATLTGH 176
Query: 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1282
T +V V +F P D K++S+S G I+ D+ T+ H ++++A
Sbjct: 177 TGEVNSV---AFSP--DGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPD 230
Query: 1283 APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341
++ASGS I+V+ L GE + T+ H SV L + P LA+GSAD
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHT--------NSVTSLAWSPDGKRLASGSAD 282
Query: 1342 ACVSI 1346
+ I
Sbjct: 283 GTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSIS 1183
++GH GV C V + L +I +WDLE + + D + S
Sbjct: 5 LKGHTGGVTC----VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1243
A G LA+G D ++RL+D+ T + V + HT V ++F P D +
Sbjct: 61 A------DGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTS---YVSSVAFSP--DGRIL 108
Query: 1244 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303
S+S+ I+ D+ K T+ H ++++A +AS S IK++ L
Sbjct: 109 SSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 1304 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346
+ H G VN + F P L + S+D + +
Sbjct: 168 KCVATLTGH-------TGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 7e-18
Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 29/334 (8%)
Query: 1017 RSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDN 1075
S+ L + + E + P ++++ + IK+W+ + L+ S +
Sbjct: 47 SDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG 106
Query: 1076 HDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134
D +SKL L + S+LL +S +G +++W D +++GH V
Sbjct: 107 L--HDSSVSKLALSSPDGNSILLASSSLDGTVKLW------DLSTPGKLIRTLEGHSESV 158
Query: 1135 RCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
+ + L + + +I LWDL + + + +S+L S G
Sbjct: 159 TS----LAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGL 212
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253
+A+G DG++RL+D+ T +L + H+ V SF P D + + S S G I+
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS----SFSP--DGSLLASGSSDGTIR 266
Query: 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313
D+R+ T+ H S+ ++A ++ASGS+ ++++ LE +L +
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL---- 322
Query: 1314 SFMAQKIGSVNCLTFHPY-QVLLAAGSADACVSI 1346
+ G V+ L+F P +L++ GS D + +
Sbjct: 323 -TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (209), Expect = 6e-17
Identities = 75/341 (21%), Positives = 131/341 (38%), Gaps = 41/341 (12%)
Query: 1018 SSVSKLNNPIACWDTRFEKGTKTALLQP--------FSP----IVVAADENERIKIWNYE 1065
+ S L+ + WD L FSP + + + IK+W+
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 1066 EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125
L++ H P ++ + L+ S +G IR+W D S
Sbjct: 187 TGKPLSTLAGHTDPVSSLA----FSPDGGLLIASGSSDGTIRLW------DLSTGKLLRS 236
Query: 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185
++ GH +VV + L + +I LWDL ++ + S S+ ++
Sbjct: 237 TLSGHS-----DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSV 290
Query: 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1245
S G LA+G DG+VRL+D+ T + S+ V +SF P +
Sbjct: 291 AFSPD-GKLLASGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSFSPDGSLL-VSG 346
Query: 1246 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1305
S G I+ D+R K T++ H ++ +++ +++SGS ++++ L L
Sbjct: 347 GSDDGTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346
H S V L F P LA+GS+D + +
Sbjct: 405 LRNLDGHTS-------RVTSLDFSPDGKSLASGSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (163), Expect = 2e-11
Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 36/297 (12%)
Query: 1019 SVSKLNNPIACWDTRFEKGTKTALLQP-------FSP----IVVAADENERIKIWNYE-E 1066
S S L+ I WD R K T FSP ++ + + I++W+
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126
L ++ H D +S D SLL S +G IR+W D + L+ +
Sbjct: 232 KLLRSTLSGH--SDSVVSSFSP----DGSLLASGSSDGTIRLW---DLRSSSSLL---RT 279
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
+ GH V V + L + ++ LWDLE + + + + +S+L+
Sbjct: 280 LSGHSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246
S ++ G DG++RL+D+RT L V+ +SF P D + S
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSVSFSP--DGRVVSSG 388
Query: 1247 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303
S G ++ D+ +D H +++L +ASGS+ I+++ L+
Sbjct: 389 STDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC 1325
T+ H G ++ +A ++A+GS IKV+ LE +L H G V
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-------TGPVRD 56
Query: 1326 LTFHPYQVLLAAGSADACVSI 1346
+ LA+GS+D + +
Sbjct: 57 VAASADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1287
V ++F P D + + S G I+ D+ + T+ H G + +A +A
Sbjct: 11 GVTCVAFSP--DGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 1288 SGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347
SGS+ + I+++ LE + H S V+ + F P +L++ S D + +
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTS-------YVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 1348 S 1348
Sbjct: 121 D 121
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1348 | |||
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| PF14538 | 154 | Raptor_N: Raptor N-terminal CASPase like domain | 100.0 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.86 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.82 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.78 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.76 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.75 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.73 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.72 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.65 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.6 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.59 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.58 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.58 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.52 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.52 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.49 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.45 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.44 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.39 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.39 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.37 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.33 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.24 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.24 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.23 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.17 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.16 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.16 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.14 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.12 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.12 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.09 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.06 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.97 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.95 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.94 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.93 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.89 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.87 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.85 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.83 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.8 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.78 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.77 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.76 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.74 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.73 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.73 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.72 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.71 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.69 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.67 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.66 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.66 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.65 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.64 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.64 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.59 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.59 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.56 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.56 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.53 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.51 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.46 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.45 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.44 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.42 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.39 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.35 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.3 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.3 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.28 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.27 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.27 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.26 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.19 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.17 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.17 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.16 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.98 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.97 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.94 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.94 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.92 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.88 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.85 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.78 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.77 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.73 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.71 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.7 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.7 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.68 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.66 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.62 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.53 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.51 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.48 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.45 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.43 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.43 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.41 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.41 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.37 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.35 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.3 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.28 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.26 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.22 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.2 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.18 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.12 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.07 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.02 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.01 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.01 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.97 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.93 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.93 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.84 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.81 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.81 | |
| PF00656 | 248 | Peptidase_C14: Caspase domain; InterPro: IPR011600 | 96.79 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 96.76 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.76 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.59 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.56 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.51 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.46 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.38 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.33 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.32 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.29 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.26 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.25 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.2 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.18 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.05 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.04 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.03 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.99 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.99 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.88 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.86 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.72 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.62 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.62 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.51 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.38 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 95.36 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.28 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.24 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.22 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.22 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.14 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.09 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.06 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.99 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.92 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.82 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.79 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.71 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.69 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.68 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 94.66 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.64 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.38 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.32 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.27 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.11 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 93.93 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.92 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 93.88 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.85 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.84 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.77 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 93.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.73 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.72 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.66 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.66 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 93.62 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.6 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 93.56 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.4 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 93.35 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 93.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.05 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 92.8 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 92.35 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 92.33 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 92.23 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.19 | |
| PRK10115 | 686 | protease 2; Provisional | 91.99 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.89 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 91.71 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.67 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.58 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.54 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 91.49 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 91.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.22 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.13 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 91.09 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 90.98 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.84 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 90.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.68 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.46 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.42 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 90.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.32 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 90.09 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 90.02 | |
| smart00115 | 241 | CASc Caspase, interleukin-1 beta converting enzyme | 89.65 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.62 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 89.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.89 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 88.8 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.76 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 88.42 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 88.33 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 88.28 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.25 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.16 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 88.02 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.92 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 87.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 87.66 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 87.33 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.18 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.01 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 86.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 86.88 | |
| cd00032 | 243 | CASc Caspase, interleukin-1 beta converting enzyme | 86.85 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 86.67 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 86.67 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.54 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.46 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 86.24 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 86.09 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 85.95 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 85.37 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 84.32 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.11 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 83.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.39 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 83.1 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 82.77 |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-295 Score=2578.27 Aligned_cols=1311 Identities=57% Similarity=0.927 Sum_probs=1099.6
Q ss_pred cccchhhhcccccc--cccCcccC-CCCCCCCCCccCCCCcCCCCcCCCCccccccccccccccccccc--ccccccccc
Q 000697 3 LGDLMASRFSQSAV--VSNHLNDD-CGSAHGDVDLRRDSDTASSSYTNNASVTTITTTTTTSLAYLPQT--VVLCELRHE 77 (1348)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rh~ 77 (1348)
+||+|.|+.+++|+ |.||.+++ +.++|+|...+.+.... . ..++++...+...+++++.. +||+|+||.
T Consensus 1 ~~e~~~s~~~~~s~~~v~~~~~~~~~~~~~~d~~~~~~~~~~---~---~~~~~e~~~n~~~~~~l~~~~~ly~~d~Rh~ 74 (1387)
T KOG1517|consen 1 MGELSGSSPSSSSVQEVANHKVDNGADSSHDDTRSRLGDSIS---I---EQGFEEQYSNAQSLASLPQTFVLYLCDPRHD 74 (1387)
T ss_pred CCccccCCCCccchhhhccccccccccccccchhhhcccccc---c---ccchhhhhhhHHHHHhCcceEEEEecccccc
Confidence 58999999988877 89999854 44556665544332222 1 23467777888999999987 566999999
Q ss_pred cccCCCCCCCCCCCC--CCccccCCccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHH
Q 000697 78 AFEASTPSGPSDSGL--VSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155 (1348)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~ 155 (1348)
+ +| |++.+.+.. +++|||||||||++||||||||||||||||+|++||||+||||||+++++.||+|+||||||.
T Consensus 75 ~--~g-pi~~~~~~~~~~~~wR~keRmkT~svAlvlCLnigVDPPdvik~~pcaRle~WiDP~s~~~~KA~e~IG~nlq~ 151 (1387)
T KOG1517|consen 75 E--DG-PIETEDIVIEEIPDWRMKERMKTASVALVLCLNIGVDPPDVIKISPCARLECWIDPFSMGPPKALEAIGKNLQR 151 (1387)
T ss_pred c--cC-CCchhhcccccCCCchHHHHhhhhHhHHhhhhhcCcCCccccCCCcchhhhhccCccccCChHHHHHHHHHHHH
Confidence 9 66 676655544 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccCCCHHHHHHHHHHhhccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchHhhhhhcCC
Q 000697 156 QYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKT 235 (1348)
Q Consensus 156 qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~ 235 (1348)
|||+||+|+|||+++||++|||||+|+++||+||+||||||||||||||||+|||||||||+||||||+||+|||+|||+
T Consensus 152 qYE~wqprtRYK~~lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~a 231 (1387)
T KOG1517|consen 152 QYERWQPRTRYKVCLDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGA 231 (1387)
T ss_pred HHHhhChhhhhhhccCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCchhhHHHHH---HhhccC----------CCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhcccchH
Q 000697 236 PSIYVFDCSAAGMIVNAF---IELHDW----------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1348)
Q Consensus 236 p~~~v~dc~~ag~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftscl~tP~ 302 (1348)
|+||||||++||+||.+| .|.+|+ +.++..+.|+|||++|||+++|+|||+|+||||+|||||||||
T Consensus 232 P~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTsCLTTPI 311 (1387)
T KOG1517|consen 232 PTIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTSCLTTPI 311 (1387)
T ss_pred CeEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhhhhcCch
Confidence 999999999999887776 555542 2355678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhccCCCCcCcccCchhhHHHHHHHHHHHHhhccCCHHHHHHhhhhhhHHHHHHHHHHHH
Q 000697 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLA 382 (1348)
Q Consensus 303 ~~al~~~~~~~~~~~~~~~~~~~~ipg~~~~~~~~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d~~va~lfrnflla 382 (1348)
+|||+||++|++++..++.++|++|||+++|||||||||||||||||||||||+|||++||||||||||||+||||||||
T Consensus 312 ~isl~w~~~~s~l~~~i~~~lidkIPGrlnDRRT~LGELNWIFTAITDTIAWn~lPR~LFQrLFRQDLLvAsLFRNFLLA 391 (1387)
T KOG1517|consen 312 EISLKWFLMQSPLKDFIDESLIDKIPGRLNDRRTPLGELNWIFTAITDTIAWNSLPRELFQRLFRQDLLVASLFRNFLLA 391 (1387)
T ss_pred hHHHHHHHhhchhhhhhhhHHHhhCCccccccccccchhceeeeeeeceehhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCC-CCCcCC-CcchHHhHhhhHHHhcCCCCCCCCC
Q 000697 383 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADP-NAEYQP-SPFFSEQLTAFEVWLDHGSEHKKPP 460 (1348)
Q Consensus 383 ~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~-~~~~~~-~~ff~~~Ltafe~~L~~g~~~~~~p 460 (1348)
||||++|||||||.|+||+|++||||++||+|+|+||+|||.++.++ +++|++ ++||+|||||||+||++|++.++||
T Consensus 392 eRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PP 471 (1387)
T KOG1517|consen 392 ERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPP 471 (1387)
T ss_pred HHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCCh
Confidence 99999999999999999999999999999999999999999777776 699999 6999999999999999999999999
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~ 540 (1348)
|||||||||||||+||+|||+||+||||+|||||+|||++||||||||||||++.|||++||||||||||+||+||.||+
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhhhhhhccC-CCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 541 KDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 541 k~~~~~yf~~~L~~-~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
|++||+||+++|++ ...++|||+|+|||||.|+++|+.||..|++.+++.+|+++|++ ++.|++|||+|||||
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd------~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND------DPEPLLRQWLCICLG 625 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC------CccHHHHHHHHHHHH
Confidence 99999999999998 55557999999999999999999999999999999999999993 368999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCC-CCCCc-hHHHHHHHHHHH---
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEG-DEECD-DDEKIRAEISII--- 694 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~e~~~~--- 694 (1348)
+||+||++|+|+|++.++|++|+.+|.|++||||||+|||||+|++...+.|...... .+..+ ++++..+|..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999998765544321111 11111 234566787777
Q ss_pred HHHhhhccCCChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccccccCCcCcccccccCCCCcc--cccccCCccccc
Q 000697 695 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSI--VSSQIGPLTRVG 772 (1348)
Q Consensus 695 ~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 772 (1348)
+.++..++|+||+||+|++++|++++..|.++|..+|+++++++.+..-...... +..+..++ ..+.+...|..+
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE~~~~~~---~~s~~~~~~~~~si~~~~~~s~ 782 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLEKSLPNK---AQSSHKFSDSGSSIVATTWMSL 782 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhhccCCcc---ccccccccccccceeeeechhh
Confidence 5888899999999999999999999999999999999999988654222111100 01111111 111122122211
Q ss_pred c-----cc----ccccCccccC-CCccccCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCCCCCCCchHHHHHHHHH
Q 000697 773 N-----EA----VVRDGRVSTS-SPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMC 842 (1348)
Q Consensus 773 ~-----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 842 (1348)
+ .. ...++..+.+ ..++..+.+.+.++..++......+.......+|... .++...++.|++..+..+
T Consensus 783 L~rs~d~s~~~a~aa~~~i~~~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~--~~~~~~~at~s~~v~~~~ 860 (1387)
T KOG1517|consen 783 LIRSLDPSLENAEAAEGIISYSLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVH--QPRSLDNATYSQSVKSML 860 (1387)
T ss_pred eeeccCcccchhHhhcCeeeccccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccC--CCccccchHHHHHHHHhH
Confidence 1 00 1122222222 2222334444556665555555544444433333221 233456789999999999
Q ss_pred hhcCCCChhhhhhcchhhcchhchhhcccCcccCCCCCCCCCCCCCCCCCCCCCccccCccccCCC----------CCCC
Q 000697 843 TLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNG----------GHLP 912 (1348)
Q Consensus 843 ~L~~Dp~p~v~~~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rs~s~~~~~~----------~~~~ 912 (1348)
.+++||+|+|+.+++++.+.+..|+.+..+++.........+ ..++...++.++.++.++.. .+.+
T Consensus 861 ~~~k~P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~g~~~~----~~~~~~~gL~~s~S~~d~~a~s~~~s~~~~~~~s 936 (1387)
T KOG1517|consen 861 RLAKDPNPRVSSLGRRVLSLIGKEQRVADPSKVSGPVGEAAS----SASTPLQGLALSSSGSDMHASSKDDSSLTDENKS 936 (1387)
T ss_pred hhhcCCCccccchhhhhhhhhchhccccCcccccCCCCcccc----cccchhhhcccccCCCCCCcCCcccccccccccC
Confidence 999999999999999999999888776655443322110111 11122334445555444421 2333
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC-CCcchhccccccCCccCCCC
Q 000697 913 LKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLP-PSTIYNWSCGHFSKPLLTAA 991 (1348)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP-~S~f~ews~~yf~~P~m~~~ 991 (1348)
...++++..|+...++.|.++.+...+.|+....|..+.+.+.....+ .++..+| ...||+||++||++|+|+..
T Consensus 937 ~n~et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~~~~~l~~p~~~a~~----~e~S~l~~~~~f~~Ws~~yF~eP~m~~~ 1012 (1387)
T KOG1517|consen 937 LNDETPPSGPPGTNGLAGARRVCPLAFRPRLEKHPDRGLADPLDGASG----SERSLLPTVTIFYDWSRKYFTEPQLKGA 1012 (1387)
T ss_pred cccCCCCCCCCCccccccCCcCCChhcCchhccCCCccccCccccccc----cccccccceeeechhhHhhhcccccCCc
Confidence 445566777788788888888888888888766665444444332222 2356777 45599999999999999999
Q ss_pred CCchHHHHHHHHH--HHHHHHHHHhhccc-cccccC-CcccccccCCCCC----eEEEEEcCCCCEEEEEECCCcEEEEE
Q 000697 992 DDTEEILARREER--EKFALEHIAKCQRS-SVSKLN-NPIACWDTRFEKG----TKTALLQPFSPIVVAADENERIKIWN 1063 (1348)
Q Consensus 992 e~de~~~~~r~~r--~~~~~e~i~~~q~~-~~~kl~-~~i~~Wd~~~~~~----I~sl~fspdg~~Latgs~dg~I~VWd 1063 (1348)
+++|+++.++++| ++.+.+.+.+.+.+ +..++. ..+..|+.+...+ ...+.|+|..+.++++++...|+|||
T Consensus 1013 e~dE~~s~~~~~r~wrr~R~e~i~kr~~~~~~~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd 1092 (1387)
T KOG1517|consen 1013 EADEEGSEEREERLWRRNRNEKIIKRQASQEIQKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWD 1092 (1387)
T ss_pred cccchhhhHHHHHHHHHhhHHHHHHhhcccceeeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEe
Confidence 9999998875544 55555655444333 233443 3478999887544 89999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcccccceEEE
Q 000697 1064 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVD 1142 (1348)
Q Consensus 1064 ~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ 1142 (1348)
++.++.+..|.++.++...|+.++++|..|..++++|+.||.||||+.+... ++.+++++|..+.++.......+++++
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence 9999999999999999999999999999999999999999999999998765 889999999999999988888888999
Q ss_pred EecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe--eeEeec
Q 000697 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTR 1220 (1348)
Q Consensus 1143 ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~--~v~~~~ 1220 (1348)
|.+..++|+++|+...|+|||+.++. ++..++...+..|++++.....|+++++|+.||+|++||.|.... .+..++
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 99999999999999999999999999 999999999999999988888899999999999999999997653 555554
Q ss_pred CCCCCCCC--eEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecCC--C-CeEEEEEeCCCCEEEEEeCCCc
Q 000697 1221 PHTQQVER--VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHR--G-SLSALAVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1221 ~~~~h~~~--I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h~--~-~VtsLa~spdg~~LasgS~Dg~ 1294 (1348)
.|... |..+.+++. +-..|++|+.||.|++||+|.. .+...++..|. + .++++.+|++.+++|+|+. +.
T Consensus 1252 ---~h~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1252 ---EHNDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred ---ccCCcccceeEEeecC-CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 44455 999999997 3457999999999999999983 33344444443 4 5999999999999999998 99
Q ss_pred EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+||++.|+.+..+++ +.+|+++..+.++|++|||+..+||+|+.|.+|.||.
T Consensus 1327 ikIy~~~G~~l~~~k~-n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1327 IKIYSLSGEQLNIIKY-NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred EEEEecChhhhccccc-CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 9999999999999999 9999999999999999999999999999999999984
|
|
| >PF14538 Raptor_N: Raptor N-terminal CASPase like domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=501.70 Aligned_cols=153 Identities=75% Similarity=1.325 Sum_probs=152.1
Q ss_pred ccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCHHHHHHH
Q 000697 101 RMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKL 180 (1348)
Q Consensus 101 ~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~ 180 (1348)
||||+++|||||||||+||||++|++||||+|||+||+.++++|++++||++||+|||+|++|+|||+++||++||+|++
T Consensus 1 ~~kt~~~~l~lcln~g~dppd~~~~~~~ar~~cW~dp~~~~~~~~~~~I~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~ 80 (154)
T PF14538_consen 1 RMKTVSVALVLCLNIGVDPPDVVKTSPCARLECWIDPSNMPPSKASEEIGKNLQSQYESWQPRARYKQSLDPTVEDLKRL 80 (154)
T ss_pred CceeeEEEEEEeecCCCCCCCccccCCCceEEEecCCcccCchhHHHHHHHHHHHHHHHhCccCcEEEecCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchHhhhhhcCCCeEEEEeCCchhhHHHHH
Q 000697 181 CNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAF 253 (1348)
Q Consensus 181 ~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~p~~~v~dc~~ag~~~~~~ 253 (1348)
|.++||+|++|||||||||||||+||++|||||||++||||||+||+||++|+|+|+||||||+|||.||++|
T Consensus 81 ~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~AG~il~~f 153 (154)
T PF14538_consen 81 CQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSNAGSILNAF 153 (154)
T ss_pred HHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCcHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-56 Score=529.03 Aligned_cols=794 Identities=18% Similarity=0.196 Sum_probs=445.6
Q ss_pred HHHHHHHHHHHhhhcCCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCCCCCcCCCcchHHhHhhhHHHhcCC
Q 000697 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHG 453 (1348)
Q Consensus 374 ~lfrnflla~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Ltafe~~L~~g 453 (1348)
..|..=|=|=-+-=.||..-=.=| ++.-++|+..|+|.+++ ++|..+.+|||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PP-----------eQLPiVLQVLLSQvHRl---------------RAL~LL~RFLDlG 501 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPP-----------EQLPIVLQVLLSQVHRL---------------RALVLLARFLDLG 501 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCCh-----------HhcchHHHHHHHHHHHH---------------HHHHHHHHHhccc
Confidence 445555555555445554321111 56778999999999999 9999999999999
Q ss_pred CCCCCC---CCchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHH---------hcCchhhhHHhccC-C--chhhh
Q 000697 454 SEHKKP---PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLAL---------SVGIFPYVLKLLQT-T--TPELR 518 (1348)
Q Consensus 454 ~~~~~~---p~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal---------~~gifpyvlklL~s-~--a~elr 518 (1348)
+|+... .||||||||+|||.+.+||++++ || ||+|||| +.+++-||++.|+. + .+|+|
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLV---FI----WAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqr 574 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILV---FI----WAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQR 574 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHH---HH----HHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHH
Confidence 999654 49999999999999999999999 99 9999996 67889999999987 3 46999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000697 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1348)
Q Consensus 519 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 598 (1348)
+|++||+|.|+..++-||.+|+..+++..|+.+|++.. .|++|||+|+||++||.||..+||.|.++++|++++.+|.
T Consensus 575 tmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls- 652 (1387)
T KOG1517|consen 575 TMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS- 652 (1387)
T ss_pred HHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc-
Confidence 99999999999999999999999999999999999864 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcc----chHHHHhh------------hccCch---hhhhhhccCCCHHHHHHHHHH
Q 000697 599 SMPNDAQTEPLFLQWLCLCLGKLWED----FTEAQTIG------------RRADAP---AIYVPLLSEPQPEVRASAVFS 659 (1348)
Q Consensus 599 ~~~~~~d~~p~~R~w~~l~Lg~l~~~----~~~~~~~~------------~~~~~~---~~l~~ll~D~sP~VRaa~v~a 659 (1348)
|++||||++++++||+|+++ +++..... ++..+. ..++.+++|++|+||+|++++
T Consensus 653 ------D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 653 ------DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred ------CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999987 56554433 444444 378889999999999999999
Q ss_pred HHhhcccCcCCCCCCCCCCCCCchHHHHHHH---------------------HHHHHHHhhhccCCChhhHHHHHHHHHH
Q 000697 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAE---------------------ISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1348)
Q Consensus 660 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e---------------------~~~~~~ll~~~~D~sp~VR~e~~~~ls~ 718 (1348)
|++|+-.+..++... +.++...+....| ..+++.+|....|+|-.+..++--.+++
T Consensus 727 ls~~~~g~~~~~~~v---a~n~~~~~~~~lE~~~~~~~~s~~~~~~~~~si~~~~~~s~L~rs~d~s~~~a~aa~~~i~~ 803 (1387)
T KOG1517|consen 727 LSHFVVGYVSHLKVV---AGNYLLPESSSLEKSLPNKAQSSHKFSDSGSSIVATTWMSLLIRSLDPSLENAEAAEGIISY 803 (1387)
T ss_pred HHHHHHhhHHHhHHH---hhhhcccchhhhhccCCccccccccccccccceeeeechhheeeccCcccchhHhhcCeeec
Confidence 999996665443321 1111111110111 1124556666778777653333322222
Q ss_pred HHHhc------chh------HHHHHHhhccccccc-ccCCcCcccccccCCCCcccccccCCccccccccccccCccc-c
Q 000697 719 FAFGH------KQH------LKSIAAAYSKPQSNS-LLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEAVVRDGRVS-T 784 (1348)
Q Consensus 719 ~~~~~------~~~------f~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 784 (1348)
..... ... +...+...+.+.... .......+. +..+ .. .+.+..+.. +
T Consensus 804 ~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~~~~~~~-----------~at~---s~----~v~~~~~~~k~ 865 (1387)
T KOG1517|consen 804 SLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVHQPRSLD-----------NATY---SQ----SVKSMLRLAKD 865 (1387)
T ss_pred cccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccCCCcccc-----------chHH---HH----HHHHhHhhhcC
Confidence 11110 000 111111100000000 000000000 0000 00 000000000 1
Q ss_pred CCCccccCCC-----CCCCCC-CCC-CCCCCCCcccCCCCCCcccccCCCCCCCchHHHHHHHHHhhc---CCCChhhhh
Q 000697 785 SSPLANAGLM-----HGSPLS-DDS-SQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLA---KDPSPRIAT 854 (1348)
Q Consensus 785 ~~~~~~~~~~-----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~Dp~p~v~~ 854 (1348)
+.+..++..+ .+.+.. .+. -.....|.. .+...+-.+. +.++ .|++-.-
T Consensus 866 P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~g~~------------------~~~~~~~~~g-L~~s~S~~d~~a~s-- 924 (1387)
T KOG1517|consen 866 PNPRVSSLGRRVLSLIGKEQRVADPSKVSGPVGEA------------------ASSASTPLQG-LALSSSGSDMHASS-- 924 (1387)
T ss_pred CCccccchhhhhhhhhchhccccCcccccCCCCcc------------------cccccchhhh-cccccCCCCCCcCC--
Confidence 1111110000 000000 000 000000000 0000000000 0000 0000000
Q ss_pred hcchhhcchhchhhcccCcccCCCCCCCCCCCCCCCCC-CCCCccccCccccCCCCCCCCCCCCCC--CCCCCCCCCc--
Q 000697 855 LGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTP-SLAGLVRSSSWFDMNGGHLPLKFRTPP--VSPPRQSFLP-- 929 (1348)
Q Consensus 855 ~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~rs~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 929 (1348)
-. + + .......+. ....+.+.++.+ ...+..|..+.... +.....+. ...|...+..
T Consensus 925 -~~---~-s----~~~~~~~s~----n~et~~~~p~~~~~l~Ga~~~~~~~~~-----p~~~~~~~~~l~~p~~~a~~~e 986 (1387)
T KOG1517|consen 925 -KD---D-S----SLTDENKSL----NDETPPSGPPGTNGLAGARRVCPLAFR-----PRLEKHPDRGLADPLDGASGSE 986 (1387)
T ss_pred -cc---c-c----cccccccCc----ccCCCCCCCCCccccccCCcCCChhcC-----chhccCCCccccCccccccccc
Confidence 00 0 0 000000000 000000000000 00001111100000 00000000 0000000000
Q ss_pred --ccccc-cccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCcchhccccccCCccCCCCCCchHHH-----HHH
Q 000697 930 --GMRRV-CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL-----ARR 1001 (1348)
Q Consensus 930 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~S~f~ews~~yf~~P~m~~~e~de~~~-----~~r 1001 (1348)
.++.+ .++.|..+++.+|. +...+..++++. +|--+.+++-..+.....+.++ ...
T Consensus 987 ~S~l~~~~~f~~Ws~~yF~eP~--m~~~e~dE~~s~--------------~~~~r~wrr~R~e~i~kr~~~~~~~~lst~ 1050 (1387)
T KOG1517|consen 987 RSLLPTVTIFYDWSRKYFTEPQ--LKGAEADEEGSE--------------EREERLWRRNRNEKIIKRQASQEIQKLSTN 1050 (1387)
T ss_pred cccccceeeechhhHhhhcccc--cCCccccchhhh--------------HHHHHHHHHhhHHHHHHhhcccceeeeccc
Confidence 01011 13567788888885 444444444331 1111111111111110000000 000
Q ss_pred --HHHHHHHHHHHHhhcccc-----------ccccCCcccccccCCC-------------CCeEEEEEcCC--CCEEEEE
Q 000697 1002 --EEREKFALEHIAKCQRSS-----------VSKLNNPIACWDTRFE-------------KGTKTALLQPF--SPIVVAA 1053 (1348)
Q Consensus 1002 --~~r~~~~~e~i~~~q~~~-----------~~kl~~~i~~Wd~~~~-------------~~I~sl~fspd--g~~Latg 1053 (1348)
..|+.+...... .++.. ....+..+.+|+.+.+ ..|+.+.+-.+ ..+|++|
T Consensus 1051 ~i~~W~~~~~~~n~-~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNN-QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred cccchHHHHHhcCC-CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee
Confidence 122222211100 01111 1122456777887753 67999998654 3489999
Q ss_pred ECCCcEEEEE-CCC----CcEEEEeeCCCC--CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1054 DENERIKIWN-YEE----DTLLNSFDNHDF--PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1054 s~dg~I~VWd-~~t----~~~l~~~~~h~~--~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+.||.|+||+ +.+ .+.+..+.+-.. ++..=+.+.+.|.+..++|+++|+-..|+|||... ...+ ..
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~----E~~~---~d 1202 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK----EQVV---AD 1202 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc----ceeE---ee
Confidence 9999999994 433 245554433210 11111223444477777888888899999999965 1222 11
Q ss_pred cc-CCCCcccccceEEEEe-cCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCC-CeEEEEEecCCC-CEEEEEeC
Q 000697 1127 IQ-GHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC-SISALTASQVHG-GQLAAGFV 1200 (1348)
Q Consensus 1127 l~-~h~~~V~si~~~v~ws-~~~~~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~~~~~-~VtsL~~~s~dg-~~LvsGs~ 1200 (1348)
+. +....+++ +.-+ ..++.+++|..||.|++||.+.... .+...+.|... +|..+ ..++.| ..+++|+.
T Consensus 1203 iP~~s~t~vTa----LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~-slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTA----LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL-SLQRQGLGELVSGSQ 1277 (1387)
T ss_pred cccCCCcccee----ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE-EeecCCCcceeeecc
Confidence 21 22222333 3332 3357777788999999999886431 46666666543 37888 445544 46999999
Q ss_pred CCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-------CC
Q 000697 1201 DGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-------RG 1272 (1348)
Q Consensus 1201 DG~VrvwDlr~~~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-------~~ 1272 (1348)
||.|++||+|... ........+.+..+.++++.++++ ...+++|+. +.|+||++.. +.+..++.+ .+
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h--apiiAsGs~-q~ikIy~~~G--~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH--APIIASGSA-QLIKIYSLSG--EQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccC--CCeeeecCc-ceEEEEecCh--hhhcccccCcccccCcCC
Confidence 9999999999842 111122122222346999999999 999999998 9999999984 345555433 35
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
.++|++|||+..++|+|+.|.+|.||..+.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCC
Confidence 789999999999999999999999998543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.72 Aligned_cols=286 Identities=17% Similarity=0.297 Sum_probs=255.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|++.|.|+.|+|+|..|++|+.|.++|+||..+...+.+.++|. ..|.|++| +|||+.|++|+.||.|++||.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~---~WVlcvaw--sPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK---NWVLCVAW--SPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc---cEEEEEEE--CCCcchhhccccCCeEEEecC
Confidence 4578999999999999999999999999999999999999999999 99999999 899999999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEec-----CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-----QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-----~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.+ +++. . +.+.+|...|.+ ++|.| ....+++++.||.|+|||+..+. ++..+.+|... |+|+.
T Consensus 187 kt--g~~~-g---~~l~gH~K~It~----Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~-VTCvr 254 (480)
T KOG0271|consen 187 KT--GQQI-G---RALRGHKKWITA----LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTAS-VTCVR 254 (480)
T ss_pred CC--CCcc-c---ccccCcccceeE----EeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccc-eEEEE
Confidence 66 3322 2 578999999998 89975 46688888999999999999999 99999999887 99995
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-----------------------------
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG----------------------------- 1237 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~----------------------------- 1237 (1348)
| ....++++|+.|++|++|+...+. +.+ .+++|..+|+.++.+-+
T Consensus 255 w--GG~gliySgS~DrtIkvw~a~dG~-~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 255 W--GGEGLIYSGSQDRTIKVWRALDGK-LCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred E--cCCceEEecCCCceEEEEEccchh-HHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 4 245799999999999999998876 444 45688899999998722
Q ss_pred -----CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc
Q 000697 1238 -----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1311 (1348)
Q Consensus 1238 -----~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~ 1311 (1348)
..+..+++|+.|+++.+|+.....+++..+.+|..-|+.+.|+||++++|++|.|+.|++|+ .+|+.+.++++
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG- 407 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG- 407 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-
Confidence 12345999999999999999877689999999999999999999999999999999999999 78999999998
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|- +.|..++|+.|.++|++|+.|.++++|+
T Consensus 408 Hv-------~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 408 HV-------AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred cc-------ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 54 8999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.13 Aligned_cols=282 Identities=20% Similarity=0.301 Sum_probs=256.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+|..+.|+.|++.|+||+.+|.++||+..+...+.+|.+|. ..|.++.|.|-.++..++||+.||++++|++...
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3689999999999999999999999999999999999999999 9999999954224779999999999999999651
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
. ....+.+|...|.. ++|+|+|.+|.+++.|.+-++||++++. .+....+|..+ |.++ .++++|.+
T Consensus 252 ----~---~l~~l~gH~~RVs~----VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~-v~~i-af~~DGSL 317 (459)
T KOG0272|consen 252 ----T---PLQDLEGHLARVSR----VAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKG-VFSI-AFQPDGSL 317 (459)
T ss_pred ----c---chhhhhcchhhhee----eeecCCCceeeecccccchhhcccccch-hhHhhcccccc-ccee-EecCCCce
Confidence 2 22678999998888 9999999999999999999999999998 67777777776 9999 78899999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
+++|+.|..-+|||+|++.+ +.. +.+|...|.+|.|+|+ |..|+||+.|++++|||++.. ..+.++.+|.+-|
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~-im~---L~gH~k~I~~V~fsPN--Gy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRC-IMF---LAGHIKEILSVAFSPN--GYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLV 390 (459)
T ss_pred eeccCccchhheeecccCcE-EEE---ecccccceeeEeECCC--ceEEeecCCCCcEEEeeeccc-ccceecccccchh
Confidence 99999999999999999994 333 3478899999999999 999999999999999999987 7899999999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~sp-dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+.|+| .|.+|+|+|.|++++||. .+..+++++.+ |+ +.|.+++.++++.+++|++.|.++++|.
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He-------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HE-------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Cc-------cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999998 788999999999999999 66788899998 76 8999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=299.11 Aligned_cols=288 Identities=16% Similarity=0.267 Sum_probs=257.4
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
--..|.+.|.++.|++|.++|++++.||.+.|||.-+..+++.+.... ..|...+| +|.|+++++|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~--sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAY--SPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEE--CCCCCeEEecCcCceeEEE
Confidence 345577899999999999999999999999999999999999888777 89999999 8999999999999999999
Q ss_pred eccCC--CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1110 KDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1110 dl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
++... ++..... +.+.+|.+.+.+ +.|- ++++|++++.|.+..+||+++++ .+..+.+|.+. |.++ .
T Consensus 125 ~ls~~d~~g~~~v~---r~l~gHtgylSc----C~f~-dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD-V~sl-s 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVS---RELAGHTGYLSC----CRFL-DDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD-VMSL-S 193 (343)
T ss_pred ecccccccccceee---eeecCccceeEE----EEEc-CCCceEecCCCceEEEEEcccce-EEEEecCCccc-EEEE-e
Confidence 99753 3333333 678999999888 6665 48899999999999999999999 99999999887 9999 5
Q ss_pred ecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1188 SQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1188 ~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+| +++.|++|+-|+..++||+|.+. .++.+ .+|.+.|++|+|.|+ |.-|++|+.|++.++||+|.. ..+..
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF---~ghesDINsv~ffP~--G~afatGSDD~tcRlyDlRaD-~~~a~ 266 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTF---EGHESDINSVRFFPS--GDAFATGSDDATCRLYDLRAD-QELAV 266 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcc-eeEee---cccccccceEEEccC--CCeeeecCCCceeEEEeecCC-cEEee
Confidence 566 99999999999999999999997 56544 577899999999999 999999999999999999987 56666
Q ss_pred Eec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1267 IDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1267 ~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+.. -..+|++++|+..|++|.+|..|..+.||| +.++.+..+.+ |+ ..|+|+..+|||..++||+.|.+
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-He-------NRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HE-------NRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cC-------CeeEEEEECCCCcEEEecchhHh
Confidence 663 245899999999999999999999999999 89999999998 76 89999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
++||+
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=316.24 Aligned_cols=284 Identities=19% Similarity=0.331 Sum_probs=245.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIW 1109 (1348)
|...|.|++|+|||+.||+|+.||+|++||.++|+.+ ..+.+|. ..|++++|.+ .+...+|++++.||.|+||
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc---cceeEEeecccccCCCccceecccCCCCEEEE
Confidence 4467999999999999999999999999999988655 5689999 9999999943 2466799999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe-
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS- 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~- 1188 (1348)
|+.. +... ..+.+|+.+|+| +.|- ..++|++|+.|++|++|+...+. +.+.+++|... |+.++..
T Consensus 233 d~~~--~~~~-----~~lsgHT~~VTC----vrwG-G~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahw-vN~lalsT 298 (480)
T KOG0271|consen 233 DTKL--GTCV-----RTLSGHTASVTC----VRWG-GEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHW-VNHLALST 298 (480)
T ss_pred EccC--ceEE-----EEeccCccceEE----EEEc-CCceEEecCCCceEEEEEccchh-HHHhhcccchh-eeeeeccc
Confidence 9854 3333 458999999998 8996 35799999999999999999999 99999998776 8888332
Q ss_pred ---------cCCC-------------------------CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1189 ---------QVHG-------------------------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1189 ---------s~dg-------------------------~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.+.+ ..+++|+.|+++.+|+-...++.+.. ..+|..-|+.+.|
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r---mtgHq~lVn~V~f 375 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR---MTGHQALVNHVSF 375 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh---hhchhhheeeEEE
Confidence 1222 35999999999999998866645443 3477899999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE-EEeccCC
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG-TIRYHHP 1313 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~-~i~~~h~ 1313 (1348)
+|+ +++++++|.|..|++||.+++ +.+.+|++|-+.|..++|+.|.++|++||.|.+++||++..+.+. .+.+ |.
T Consensus 376 SPd--~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~ 451 (480)
T KOG0271|consen 376 SPD--GRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HA 451 (480)
T ss_pred CCC--ccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CC
Confidence 999 999999999999999999998 899999999999999999999999999999999999997665544 4555 44
Q ss_pred cccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1314 ~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|.++.|+|||..+++|+.|..+++|.
T Consensus 452 -------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 -------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999999999999999994
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=296.49 Aligned_cols=281 Identities=18% Similarity=0.333 Sum_probs=241.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+|..+.|.|+|+.|++|+..|.+.+|+..+-......+.|+ ..|+++.| +.++.++++|+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD---s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD---SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc---ccceeEEE--ccCCCEEEEcCCCceEEecccch
Confidence 34689999999999999999999999999975433333457888 89999999 78999999999999999999854
Q ss_pred CCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
... +.+..|. ..|++ ++|+|++..++++++||+|+|||....+ ....+.+|.- .|.++ .+.|..
T Consensus 170 --nnV------k~~~ahh~eaIRd----lafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksv-dWHP~k 234 (464)
T KOG0284|consen 170 --NNV------KIIQAHHAEAIRD----LAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSV-DWHPTK 234 (464)
T ss_pred --hhh------HHhhHhhhhhhhe----eccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-Cccee-ccCCcc
Confidence 222 2344444 88888 9999999999999999999999999887 6777777655 49999 567788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++|+.|..|++||.|++.+ +. +..+|+..|..+.|+++ +++|+++|.|..++++|+|+. +.+.++++|+.
T Consensus 235 gLiasgskDnlVKlWDprSg~c-l~---tlh~HKntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkk 307 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSC-LA---TLHGHKNTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKK 307 (464)
T ss_pred ceeEEccCCceeEeecCCCcch-hh---hhhhccceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHhhcchh
Confidence 8999999999999999999984 44 33477899999999999 899999999999999999977 78899999999
Q ss_pred CeEEEEEeCC-CCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRH-APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.|+++.|||- ..+|.+|+.||.|..|.+. .+++..+... |.+.|++++|||-|.+|++|+.|.++++|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-------Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-------HDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccCCCcc-------cccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999995 4589999999999999976 4555555543 448999999999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=267.46 Aligned_cols=269 Identities=17% Similarity=0.294 Sum_probs=231.0
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecc
Q 000697 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1127 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l 1127 (1348)
-+|++++.|.+||+|...+|.+..+++..+ +.|..+.. .+++..|++|+.- .||+||+...+.. .+ .++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLei--Tpdk~~LAaa~~q-hvRlyD~~S~np~--Pv---~t~ 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEI--TPDKKDLAAAGNQ-HVRLYDLNSNNPN--PV---ATF 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEE--cCCcchhhhccCC-eeEEEEccCCCCC--ce---eEE
Confidence 389999999999999999999999999877 89999999 7899999988765 7999999883333 23 458
Q ss_pred cCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEE
Q 000697 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207 (1348)
Q Consensus 1128 ~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrvw 1207 (1348)
.+|...|.. +.|+.+|..+++||+||+++|||++... +.+.+.. .++|+++ ...|+...|++|..+|.|++|
T Consensus 80 e~h~kNVta----VgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~~--~spVn~v-vlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 80 EGHTKNVTA----VGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQH--NSPVNTV-VLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred eccCCceEE----EEEeecCeEEEecCCCceEEEEeccCcc-cchhccC--CCCcceE-EecCCcceEEeecCCCcEEEE
Confidence 899998888 8999999999999999999999999977 6666554 3569999 778888999999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-----cceEEEecCCCCeEEEEEeCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-----DAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-----~~v~t~~~h~~~VtsLa~spd 1282 (1348)
|++........+ . +....|.++++.|+ |.+++.+...|...+|++-... +++..++.|.+.+..+.+||+
T Consensus 152 Dl~~~~c~~~li-P--e~~~~i~sl~v~~d--gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 152 DLGENSCTHELI-P--EDDTSIQSLTVMPD--GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EccCCccccccC-C--CCCcceeeEEEcCC--CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 999876333322 2 23478999999999 9999999999999999986532 677889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCc--eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1283 APIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1283 g~~LasgS~Dg~I~Vwd~~g~--~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++||++|.|++++||+.++- .-..+++ |. ..++..+||.+|.||+||+.|+.+++|+
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~-------rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQ-------RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeec-CC-------ceEEeeeeccCccEEEecCCCCceeecc
Confidence 999999999999999998765 2234555 43 7899999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=291.18 Aligned_cols=241 Identities=20% Similarity=0.342 Sum_probs=221.5
Q ss_pred CCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspd--g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
|...+.++.|+|. +..||+|+.||++++|++++...+..+.+|. .+|..++| +|+|.+|+|++.|.+=++||+
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~---~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL---ARVSRVAF--HPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch---hhheeeee--cCCCceeeecccccchhhccc
Confidence 4578999999997 5599999999999999999889999999999 89999999 899999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+ +..-+ ...||..+|.+ ++|+++|..+++||.|..-+|||++++. ++..+.+|.+. |.+| .|+|+
T Consensus 291 ~t--k~ElL-----~QEGHs~~v~~----iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~-I~~V-~fsPN 356 (459)
T KOG0272|consen 291 ET--KSELL-----LQEGHSKGVFS----IAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKE-ILSV-AFSPN 356 (459)
T ss_pred cc--chhhH-----hhcccccccce----eEecCCCceeeccCccchhheeecccCc-EEEEecccccc-eeeE-eECCC
Confidence 77 32222 36899999998 9999999999999999999999999999 99999998776 9999 78999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
|..+++|+.|++++|||+|.... +. ...+|.+-|+.|+|+|. .|.+|+|++.|++++||..++. .+++++.+|.
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~-ly---~ipAH~nlVS~Vk~~p~-~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe 430 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSE-LY---TIPAHSNLVSQVKYSPQ-EGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHE 430 (459)
T ss_pred ceEEeecCCCCcEEEeeeccccc-ce---ecccccchhhheEeccc-CCeEEEEcccCcceeeecCCCc-ccchhhcCCc
Confidence 99999999999999999998884 43 34477899999999995 6999999999999999999998 8999999999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.|.++++++++.++++++.|+++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=279.67 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=253.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...|+.+-|+|+...++++++|++|++||+.+|+....+++|. ..+.++.| +..|.+|++++.|=.+++||..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT---DSVFDISF--DASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc---cceeEEEE--ecCccEEEecCCccchhheeHHH
Confidence 34689999999999999999999999999999999999999999 88999999 67899999999998899999854
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
. ..+.+.+.+|...|.+ ++|-|.+.+|++++.|.+|+.||+.++. ++.++.+|.+. |..+ ....||.
T Consensus 182 ~------~~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ew-vr~v-~v~~DGt 248 (406)
T KOG0295|consen 182 F------FRCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEW-VRMV-RVNQDGT 248 (406)
T ss_pred H------HHHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecccce-eEEeccCchHh-EEEE-EecCCee
Confidence 1 2233667889888888 8888999999999999999999999999 99999999885 8888 6678999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------------CCCCEEEEEECCCcEEEEEcCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------------LDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~-------------~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
++++++.|.+|++|-+.++++ .. ..++|...|-+++|-|. .++.++++++.|++|++||+.++
T Consensus 249 i~As~s~dqtl~vW~~~t~~~-k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQC-KA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred EEEecCCCceEEEEEeccchh-hh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999999999999999998862 22 34577789999999775 13469999999999999999998
Q ss_pred CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.++.++.+|...|+.++|||.|++|+++.+|++++|||+ ++.++..+.. |+ .-|++++|+.+..+++||+
T Consensus 325 -~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~-------hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 325 -MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HE-------HFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred -eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-Cc-------ceeEEEecCCCCceEEecc
Confidence 899999999999999999999999999999999999995 5677788877 76 6699999999999999999
Q ss_pred CCCeEEEcC
Q 000697 1340 ADACVSIHS 1348 (1348)
Q Consensus 1340 ~Dg~I~IWd 1348 (1348)
-|..+++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=259.84 Aligned_cols=289 Identities=16% Similarity=0.231 Sum_probs=236.8
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECC-----CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYE-----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~-----t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
..|.+.|+.++..+.+ +.+++++.|.++.+|++. .|..++.+.+|. ..|+.+.. ++||++.++++.||+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~--s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVL--SSDGNFALSASWDGT 86 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc---eEecceEE--ccCCceEEeccccce
Confidence 4577889999998875 488899999999999764 467889999999 89999998 789999999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~-~~~Vts 1184 (1348)
+++||+.. ++.. +.+.+|...|.+ +++++++.++++|+.|++|++||+..+. ..++..+. ...|+|
T Consensus 87 lrlWDl~~--g~~t-----~~f~GH~~dVls----va~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 87 LRLWDLAT--GEST-----RRFVGHTKDVLS----VAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEEecC--CcEE-----EEEEecCCceEE----EEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEE
Confidence 99999977 4333 447899999988 9999999999999999999999987764 55555543 556999
Q ss_pred EEEecCC--CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc
Q 000697 1185 LTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1185 L~~~s~d--g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~ 1262 (1348)
+ .++|+ ..+|++++.|++|++||+++-+ ... .+.+|.+.++.++++|+ |...++|+.||.+.+||++.+ +
T Consensus 154 v-rfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~---~~~gh~~~v~t~~vSpD--GslcasGgkdg~~~LwdL~~~-k 225 (315)
T KOG0279|consen 154 V-RFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRT---TFIGHSGYVNTVTVSPD--GSLCASGGKDGEAMLWDLNEG-K 225 (315)
T ss_pred E-EEcCCCCCcEEEEccCCceEEEEccCCcc-hhh---ccccccccEEEEEECCC--CCEEecCCCCceEEEEEccCC-c
Confidence 9 55565 6799999999999999999876 332 45688999999999999 999999999999999999988 6
Q ss_pred ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcc-cccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1263 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-MAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f-~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.+.++. |...|.+++|+|+...|+.+... .|+|||++ +..+..++....+. .........+++|+++|..|++|..
T Consensus 226 ~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 676665 77899999999998888877654 59999954 45555554311111 0111234567899999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
|+.|++|.
T Consensus 304 d~~irv~q 311 (315)
T KOG0279|consen 304 DNVIRVWQ 311 (315)
T ss_pred CCcEEEEE
Confidence 99999993
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=267.00 Aligned_cols=282 Identities=25% Similarity=0.444 Sum_probs=240.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|...|++++|+|++++|++++.+|.|++|+..+++....+..|. ..+..+.| .++++++++++.||.|++|++.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA--SADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE--CCCCCEEEEEcCCCeEEEEEcC
Confidence 467899999999999999999999999999999988888888888 78889999 6788999999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ++. . ..+..|...+.+ +.|++++..+++++.+|.|++||+++.+ .+..+..|... |.++ .+.+++
T Consensus 82 ~--~~~--~---~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~ 147 (289)
T cd00200 82 T--GEC--V---RTLTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDW-VNSV-AFSPDG 147 (289)
T ss_pred c--ccc--e---EEEeccCCcEEE----EEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCc-EEEE-EEcCcC
Confidence 5 221 1 234567767776 8899887777777779999999999887 78888866554 9999 566778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++++.||.|++||++..+ ....+. .|...|.++.|+|+ ++.+++++.||.|++||++.+ ..+..+..|..
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~ 220 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGK-CVATLT---GHTGEVNSVAFSPD--GEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHEN 220 (289)
T ss_pred CEEEEEcCCCcEEEEEccccc-cceeEe---cCccccceEEECCC--cCEEEEecCCCcEEEEECCCC-ceecchhhcCC
Confidence 888888889999999999776 344333 55679999999999 889999999999999999986 78888878999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.++.|++++.++++++.||.|++|+.. ++.+..+.. |. ..|.+++|++++.+|++++.||.|++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HT-------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cC-------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999889999999965 677777766 54 6899999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=273.01 Aligned_cols=279 Identities=18% Similarity=0.272 Sum_probs=241.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...|++++|+.+|..||+|+.||.++||+.. |.++.++..|. ++|.++.| +.+|.+|++++.||++.+||..+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~- 307 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHT- 307 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC---CceEEEEE--cCCCCEEEeccCCccEEEEeccC-
Confidence 4679999999999999999999999999976 88889999999 99999999 78999999999999999999966
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
+..... +.-|..+... +.|. +...+++++.||.|+|+-+.... ++.++.+|++. |.+| -+.+.|.+
T Consensus 308 -g~~~q~-----f~~~s~~~lD----VdW~-~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~-V~al-k~n~tg~L 373 (524)
T KOG0273|consen 308 -GTVKQQ-----FEFHSAPALD----VDWQ-SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE-VNAL-KWNPTGSL 373 (524)
T ss_pred -ceEEEe-----eeeccCCccc----eEEe-cCceEeecCCCceEEEEEecCCC-cceeeecccCc-eEEE-EECCCCce
Confidence 444333 4445544333 8897 46778888999999999999888 99999998776 9999 67789999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------CCCCEEEEEECCCcEEEEEcCCCCcceEEE
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------LDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~-------~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~ 1267 (1348)
|++++.|++++||.+.... ... .+.+|...|..+.|+|. ..+..+++++.|++|++||+..+ .++.++
T Consensus 374 LaS~SdD~TlkiWs~~~~~-~~~---~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f 448 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSN-SVH---DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTL 448 (524)
T ss_pred EEEecCCCeeEeeecCCCc-chh---hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEee
Confidence 9999999999999987665 333 34467799999999997 13457999999999999999998 899999
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1268 ~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|..+|.+++|+|+|+++|+|+.||.|.+|++ .++.++.... .+.|..++|+.+|..|..+..||.+.+
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---------~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---------TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---------CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 999999999999999999999999999999994 5777777765 257999999999999999999999887
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
-|
T Consensus 520 ld 521 (524)
T KOG0273|consen 520 LD 521 (524)
T ss_pred EE
Confidence 43
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=282.41 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=249.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...|.++.|||.+++++++-.+|.|.|||+++...+++|+..+ .+|.+..|+ ...+.+++|++|..||||+..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheee--eccceEEEecCCceEEEEeccc
Confidence 45789999999999999999999999999999999999999888 789999996 5778999999999999999865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.+.+ +.+..|..-+++ ++.+|...+++++++|-.|++||.+.+-.|.+++.+|... |.++++.+.|.+
T Consensus 87 ----~ekV---~~FeAH~DyIR~----iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-VMqv~fnPkD~n 154 (794)
T KOG0276|consen 87 ----GEKV---KTFEAHSDYIRS----IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-VMQVAFNPKDPN 154 (794)
T ss_pred ----ceee---EEeeccccceee----eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE-EEEEEecCCCcc
Confidence 3334 567899999999 8889999999999999999999999876588999998876 999988888999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.|++++-|++|+||.+.+.. ... ++++|...|+++.+-+.++..+|++|+.|.+|+|||..+. .+++++.+|...
T Consensus 155 tFaS~sLDrTVKVWslgs~~-~nf---Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N 229 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH-PNF---TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN 229 (794)
T ss_pred ceeeeeccccEEEEEcCCCC-Cce---eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc
Confidence 99999999999999999887 444 3458889999999988745679999999999999999997 899999999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
|+.+.|||.-+++++||.||+++||+.. -+...++.. ..+.|+|++-++.+..++.|...|.|.|
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999999943 333334433 2378999999999999999988887754
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=259.77 Aligned_cols=280 Identities=19% Similarity=0.317 Sum_probs=236.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~-t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.|++.|..+.|+|+|.+||+|+.|..|.+|+.. ..+-...+++|. +.|..+.| ..|++.|+++|.|++|+.||+
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---GAVMELHG--MRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc---ceeEeeee--ccCCCEEEEecCCceEEEEec
Confidence 467899999999999999999999999999954 446667788999 99999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
++ |+.. +..++|...|+. ++-..-+..++++ ++||++++||+++.. +++++... ..++++ .+..
T Consensus 120 ~t--G~~~-----rk~k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~k--yqltAv-~f~d 184 (338)
T KOG0265|consen 120 ET--GKRI-----RKHKGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENK--YQLTAV-GFKD 184 (338)
T ss_pred cc--ceee-----ehhccccceeee----cCccccCCeEEEecCCCceEEEEeecccc-hhhccccc--eeEEEE-Eecc
Confidence 77 4433 457888888877 4433445555555 689999999999988 88888653 348999 5667
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC---CcceEEE
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---KDAYLTI 1267 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~---~~~v~t~ 1267 (1348)
.+..+.+|+-|+.|++||+|.++ ...+ ..||.+.|+.+..+|. |.++.+-+.|.++++||++.. ..++..+
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d-~~~~---lsGh~DtIt~lsls~~--gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKND-GLYT---LSGHADTITGLSLSRY--GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccceeeccccCceeeeccccCc-ceEE---eecccCceeeEEeccC--CCccccccccceEEEEEecccCCCCceEEEe
Confidence 88899999999999999999888 4443 4578899999999999 999999999999999999853 2457788
Q ss_pred ecCC----CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1268 DAHR----GSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1268 ~~h~----~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.+|. .....++|+|++..+.+|+.|+.+++||..+ ..+..+.+ |. +.|++++|||...+|.+++.|.
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~-------gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HY-------GSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cc-------eeEEEeeecCCCcEEEEeccCc
Confidence 8763 3456789999999999999999999999665 66777777 54 8999999999999999999999
Q ss_pred eEEE
Q 000697 1343 CVSI 1346 (1348)
Q Consensus 1343 ~I~I 1346 (1348)
+|.+
T Consensus 331 ~i~l 334 (338)
T KOG0265|consen 331 TIYL 334 (338)
T ss_pred eeEe
Confidence 9875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=265.94 Aligned_cols=286 Identities=19% Similarity=0.326 Sum_probs=247.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.+|. ..|..+++ ++...||++++.|+.|+.||++
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi---~~vr~vav--S~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI---ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh---heeeeeee--cccCceEEEecCCCeeEEEech
Confidence 466889999999999999999999999999999999999999999 89999999 7788999999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .+.+ +.+.||...|.+ ++.+|.-..|++||.|.++||||+++.. .+..+.+|... |.++ .+++..
T Consensus 224 ~----nkvI---R~YhGHlS~V~~----L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~-V~~V-~~~~~d 289 (460)
T KOG0285|consen 224 Y----NKVI---RHYHGHLSGVYC----LDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP-VASV-MCQPTD 289 (460)
T ss_pred h----hhhH---HHhccccceeEE----EeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCc-ceeE-EeecCC
Confidence 5 2333 678899999988 8889999999999999999999999999 99999999776 9999 666677
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
..+++|+.|++|++||++.++.+. +...|+..|.+++.+|. ...+++++.| .|+-|++..+ ..+..+.+|..
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~--e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~ 361 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPK--ENLFASASPD-NIKQWKLPEG-EFLQNLSGHNA 361 (460)
T ss_pred CceEEecCCceEEEeeeccCceeE----eeecccceeeEEecCCc--hhhhhccCCc-cceeccCCcc-chhhccccccc
Confidence 789999999999999999998544 33467799999999999 8899999887 6999999988 77788999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc--CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH--HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~--h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-|.+++...|+ ++++|+++|.+.+|| -+|...+..... ..+. .....|.+.+|...|..|++|..|.+|++|.
T Consensus 362 iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl--~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL--ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc--ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 99999999775 888999999999999 455444433210 1111 2345789999999999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=279.84 Aligned_cols=288 Identities=18% Similarity=0.306 Sum_probs=247.2
Q ss_pred CCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d-g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..|..++|+..|++||.|+.. |.+-||+|++...+-..++|. ..++++++ ++||.+++||++||.|+|||...
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~S- 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQS- 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc---cceeeEEE--CCCCcEEEeccCCCcEEEEeccC-
Confidence 678999999999999998854 899999999998888899999 89999999 89999999999999999999855
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
+ .|+.++..|+..|+. +.|+..+..+++++-||+|+.||+.+.. +.+++.........|+ ..++.|.+
T Consensus 382 -g-----fC~vTFteHts~Vt~----v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~Qfscv-avD~sGel 449 (893)
T KOG0291|consen 382 -G-----FCFVTFTEHTSGVTA----VQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCV-AVDPSGEL 449 (893)
T ss_pred -c-----eEEEEeccCCCceEE----EEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEE-EEcCCCCE
Confidence 3 234678999999998 9999999999999999999999999999 8999988766667888 66788999
Q ss_pred EEEEeCCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1195 LAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1195 LvsGs~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
+++|+.|. .|.+|++++++ ... ...||+++|.+++|+|. +..|++||.|.+|++||+-.....+.++. +...
T Consensus 450 V~AG~~d~F~IfvWS~qTGq-llD---iLsGHEgPVs~l~f~~~--~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sd 522 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQ-LLD---ILSGHEGPVSGLSFSPD--GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSD 522 (893)
T ss_pred EEeeccceEEEEEEEeecCe-eee---hhcCCCCcceeeEEccc--cCeEEeccccceEEEEEeeccCceeeeEe-eccc
Confidence 99999886 59999999998 443 55688999999999999 99999999999999999976544566665 5667
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCc---------c---cccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPS---------F---MAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~---------f---~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+..++|+|+|+-+|+++.||.|.+|| ..+..+..+.+.++. + ........+.+++++||+.+++||.
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 99999999999999999999999999 445555555442111 1 1123467899999999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
.+.|++|+
T Consensus 603 sn~iCiY~ 610 (893)
T KOG0291|consen 603 SNSICIYD 610 (893)
T ss_pred cccEEEEE
Confidence 99999986
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=270.42 Aligned_cols=282 Identities=21% Similarity=0.368 Sum_probs=239.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--c--EEEEee------CCC-CCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1034 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED--T--LLNSFD------NHD-FPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~--~--~l~~~~------~h~-~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
|...|.+.+|+|-.. .|++|+.|-+.++|++... . ....++ ++. +....|++++| +.+|.+|++|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEee
Confidence 778999999999877 9999999999999998741 1 111111 111 22368999999 78999999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
.||.++||+... . ++ .++..|.++|.+ +.|+..|.+|++++.||++.+||..+++ ..+.+..|...
T Consensus 255 ~~G~~riw~~~G---~--l~---~tl~~HkgPI~s----lKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~- 320 (524)
T KOG0273|consen 255 EDGEARIWNKDG---N--LI---STLGQHKGPIFS----LKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAP- 320 (524)
T ss_pred cCcEEEEEecCc---h--hh---hhhhccCCceEE----EEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCC-
Confidence 999999999743 2 22 457889999988 9999999999999999999999999998 77777776553
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
-..+.|. +...|++.+.||.|+|+-+.... ++.++ .+|.+.|.++.|+|. +..|+++|.|++++||.+...
T Consensus 321 ~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t~---~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 321 ALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKTF---IGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred ccceEEe--cCceEeecCCCceEEEEEecCCC-cceee---ecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-
Confidence 4556454 46789999999999999998776 44433 468899999999999 999999999999999998877
Q ss_pred cceEEEecCCCCeEEEEEeCCCC---------EEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAP---------IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~---------~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.....+.+|...|..+.|+|.|+ .+++++.|++|++|| .+|.++..+.. |. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~-------~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQ-------EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CC-------CceEEEEecCC
Confidence 78899999999999999999654 789999999999999 67999999987 65 89999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000697 1332 QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 g~~Latgs~Dg~I~IWd 1348 (1348)
|+++|+|+.||.|.||+
T Consensus 464 g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWS 480 (524)
T ss_pred CcEEEecCCCCeeEecc
Confidence 99999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=277.08 Aligned_cols=287 Identities=14% Similarity=0.258 Sum_probs=250.5
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-CeE
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1106 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1106 (1348)
+.|-.+.+..+++.+||+.-+.|++|-..|...+|.+..-.+++.+.... .+|..+.| +..|+.|+.|+.. |.+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~--N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSF--NSTGDWIAFGCSKLGQL 332 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEe--cccCCEEEEcCCccceE
Confidence 44666666899999999999999999999999999999999999999887 78999999 6789999998765 899
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
-||++.. ....+ ..++|...+.+ ++++|||..+++|++||.|+|||..++- |..++..|... |+.+
T Consensus 333 lVweWqs--EsYVl-----KQQgH~~~i~~----l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~-Vt~v- 398 (893)
T KOG0291|consen 333 LVWEWQS--ESYVL-----KQQGHSDRITS----LAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSG-VTAV- 398 (893)
T ss_pred EEEEeec--cceee-----eccccccceee----EEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCc-eEEE-
Confidence 9999966 32222 36789999988 9999999999999999999999999999 99999999887 9999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~ 1265 (1348)
.+...|+.+++.+.||+||.||+.... ..+++.... .....|++..|. |..++.|+.|.. |.+|++.++ +.+.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~--p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTG-qllD 472 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPE--PIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTG-QLLD 472 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCC--ceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecC-eeee
Confidence 677899999999999999999998776 556553321 345678999998 999999988864 999999998 8999
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
.+.+|+++|.+++|+|++..||+||.|++|++||+-+ ..+.++.. ...+..++|+|+|+-||+++.||.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccceeEEEEcCCCCeEEEEEecce
Confidence 9999999999999999999999999999999999432 35566654 256999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+||
T Consensus 544 Itf~d 548 (893)
T KOG0291|consen 544 ITFFD 548 (893)
T ss_pred EEEEE
Confidence 99997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=300.98 Aligned_cols=290 Identities=17% Similarity=0.279 Sum_probs=232.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|.+.|.+++|+|+|++||+|+.|+.|+|||..+. . .+..+.. . ..|.+++|. ..++.+|++++.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~~v~~l~~~-~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R---SKLSGICWN-SYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c---CceeeEEec-cCCCCEEEEEeCCCe
Confidence 6788999999999999999999999999997532 1 1222332 2 478999994 346789999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
|++||+.+ ++ .+ ..+.+|...|.+ ++|++ ++..|++|+.||.|++||++++. ++..+..+ . .|.+
T Consensus 557 v~lWd~~~--~~--~~---~~~~~H~~~V~~----l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~-~v~~ 622 (793)
T PLN00181 557 VQVWDVAR--SQ--LV---TEMKEHEKRVWS----IDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-A-NICC 622 (793)
T ss_pred EEEEECCC--Ce--EE---EEecCCCCCEEE----EEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-C-CeEE
Confidence 99999965 22 22 346789998888 99986 56788999999999999999988 88888754 3 4888
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC----
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---- 1260 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~---- 1260 (1348)
+.+.++++.+|++|+.||.|++||++........ ..+|...|.++.|. + +..|++++.||.|++||++..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~--~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-D--SSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-C--CCEEEEEECCCEEEEEeCCCCcccc
Confidence 8666778999999999999999999976533333 34678999999997 4 789999999999999999843
Q ss_pred -CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCc-c----cccccCCeEEEEEeCCCC
Q 000697 1261 -KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPS-F----MAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1261 -~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~-f----~~~~~~~Vtslafspdg~ 1333 (1348)
..++.++.+|...+.+++|++++.+|++|+.|+.|++|+.. +..+..+...+.. . ...+...|.+++|++++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 25788999999999999999999999999999999999953 3333332210110 0 112345799999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000697 1334 LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1334 ~Latgs~Dg~I~IWd 1348 (1348)
+|++|+.||.|+||+
T Consensus 777 ~lva~~~dG~I~i~~ 791 (793)
T PLN00181 777 TLVAANSTGNIKILE 791 (793)
T ss_pred eEEEecCCCcEEEEe
Confidence 999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=287.72 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=247.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
+...|.++.|+++|..+++++.++.+++|+..+++ ....+.+|. ..|.+++| ++++.++++|+.|++|+|||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc---cceeeeEE--CCCCcEEEEecCCceEEEeec
Confidence 34689999999999999999999999999998777 677778888 89999999 889999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .+. .+ +++.+|...|.+ ++|++++..+++|+.|++|+|||+++++ ++..+.+|.+. |+++ .++++
T Consensus 233 ~~-~~~--~~---~~l~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-is~~-~f~~d 299 (456)
T KOG0266|consen 233 KD-DGR--NL---KTLKGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-ISGL-AFSPD 299 (456)
T ss_pred cC-CCe--EE---EEecCCCCceEE----EEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc-eEEE-EECCC
Confidence 33 122 22 568899999987 9999999999999999999999999999 99999999886 9999 88999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+++|++++.||.|++||+.++... ...+....... .+++++|+|+ +.++++++.|+.+++||++.. ..+..+.+|
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~--~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~ 375 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPN--GKYLLSASLDRTLKLWDLRSG-KSVGTYTGH 375 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCC--CcEEEEecCCCeEEEEEccCC-cceeeeccc
Confidence 999999999999999999998832 23333333222 6999999999 999999999999999999988 788899998
Q ss_pred CCCe---EEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE--CCCeE
Q 000697 1271 RGSL---SALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS--ADACV 1344 (1348)
Q Consensus 1271 ~~~V---tsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs--~Dg~I 1344 (1348)
...+ .+...++.+.++++|+.|+.|++||.. +..+..+.+ |. ...+..+++++...++++++ .|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-h~------~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-HS------KAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-CC------CCceeccccCCCcCeeeecCcCCCceE
Confidence 7753 344557789999999999999999965 777777777 52 37899999999999999998 69999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
++|.
T Consensus 449 ~~w~ 452 (456)
T KOG0266|consen 449 RLWK 452 (456)
T ss_pred EEec
Confidence 9994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=289.66 Aligned_cols=269 Identities=19% Similarity=0.321 Sum_probs=228.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...++|..|++|+.+||.|-.|..|++|.+... .++.++... +. ..+=+++.|-.+.+-|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~----------~l-----~~~d~~sad~~~~~~D~~~- 440 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS----------DL-----SNIDTESADVDVDMLDDDS- 440 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh----------hh-----ccccccccchhhhhccccC-
Confidence 478999999999999999999999999998754 333343322 11 1122344444455555433
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
.... +.+.+|.++|.+ +.|+|+..+|++++.|++||+|.+.+.. ++..+++|.. +|+.+ .+.|.|-+
T Consensus 441 --~~~~----~~L~GH~GPVyg----~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwdV-~F~P~GyY 507 (707)
T KOG0263|consen 441 --SGTS----RTLYGHSGPVYG----CSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWDV-QFAPRGYY 507 (707)
T ss_pred --Ccee----EEeecCCCceee----eeecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceeeE-EecCCceE
Confidence 1111 347899999999 8999999999999999999999999999 9999997755 59999 57799999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
|++++.|++-++|...... ..+ .+.+|.+.|.|+.|+|+ ..++++||.|.+|++||+.++ ..++.|.+|.++|
T Consensus 508 Fatas~D~tArLWs~d~~~-PlR---ifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNK-PLR---IFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPV 580 (707)
T ss_pred EEecCCCceeeeeecccCC-chh---hhcccccccceEEECCc--ccccccCCCCceEEEEEcCCC-cEEEEecCCCCce
Confidence 9999999999999988766 444 44578899999999999 999999999999999999998 8999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++++|+|+|++||+|+.||.|++||+ .|+.+..+++ |. +.|.++.|+.+|..||+||.|++|++||
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht-------~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HT-------GTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-cc-------CceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999999999999999999999995 5688888888 65 8999999999999999999999999997
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=241.95 Aligned_cols=253 Identities=15% Similarity=0.266 Sum_probs=218.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+.|+.+.+.|+++.||+|+ .-.||+||+.+++ .+.+|.+|. ..|+++.| +.+|..++|||+||++||||++.
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccC---CceEEEEE--eecCeEEEecCCCceEEEEeccC
Confidence 7899999999999999998 6789999998764 689999998 89999999 88999999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
... +..-.|..+|++ +..+|+...|++|..+|.|+|||+.... +...+....+..|.++ ...++|.
T Consensus 115 ----~~~----qR~~~~~spVn~----vvlhpnQteLis~dqsg~irvWDl~~~~-c~~~liPe~~~~i~sl-~v~~dgs 180 (311)
T KOG0315|consen 115 ----LSC----QRNYQHNSPVNT----VVLHPNQTELISGDQSGNIRVWDLGENS-CTHELIPEDDTSIQSL-TVMPDGS 180 (311)
T ss_pred ----ccc----chhccCCCCcce----EEecCCcceEEeecCCCcEEEEEccCCc-cccccCCCCCcceeeE-EEcCCCc
Confidence 111 223456788888 8889999999999999999999999988 7777766666679999 6778999
Q ss_pred EEEEEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
+++++...|..++|++-.... .......++.|.+.+..+.++|+ +++|+++|.|.+++||+..+.-+.-..+++|.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 999999999999999976431 12222345678899999999999 99999999999999999987645667888999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEec
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~ 1310 (1348)
..+..++||.+|.+|++|+.|+.+++|++ .++.+....+
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 99999999999999999999999999994 5788888887
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=246.37 Aligned_cols=250 Identities=17% Similarity=0.272 Sum_probs=218.6
Q ss_pred CcccccccCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEeeCCCCCCCCeEEEEE
Q 000697 1025 NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCL 1088 (1348)
Q Consensus 1025 ~~i~~Wd~~~~----------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------~~l~~~~~h~~~~~~ItsL~f 1088 (1348)
+..-+||.-+. ..|..++|+|.|+++|.|+-|....||++.+. ...+.+.+|. +-++++.|
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt---gylScC~f 153 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT---GYLSCCRF 153 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc---ceeEEEEE
Confidence 44566876654 45788999999999999999999999999854 4456788999 89999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCC
Q 000697 1089 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1089 ~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
. +...|+|++.|.++.+||+++ ++.. +.+.+|.+.|.+ +++.| +++.+++|+.|+..++||++.+
T Consensus 154 ~---dD~~ilT~SGD~TCalWDie~--g~~~-----~~f~GH~gDV~s----lsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 154 L---DDNHILTGSGDMTCALWDIET--GQQT-----QVFHGHTGDVMS----LSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred c---CCCceEecCCCceEEEEEccc--ceEE-----EEecCCcccEEE----EecCCCCCCeEEecccccceeeeeccCc
Confidence 3 578999999999999999976 4433 448899999988 88888 7888999999999999999999
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. +++++.+|... |+++ .+.|+|.-|++|+.|++.|+||+|... .+..+ .+..-...|++++|+.. |++|.+|.
T Consensus 220 ~-c~qtF~ghesD-INsv-~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~y-s~~~~~~gitSv~FS~S--GRlLfagy 292 (343)
T KOG0286|consen 220 Q-CVQTFEGHESD-INSV-RFFPSGDAFATGSDDATCRLYDLRADQ-ELAVY-SHDSIICGITSVAFSKS--GRLLFAGY 292 (343)
T ss_pred c-eeEeecccccc-cceE-EEccCCCeeeecCCCceeEEEeecCCc-EEeee-ccCcccCCceeEEEccc--ccEEEeee
Confidence 9 99999999877 9999 556899999999999999999999987 44445 33345678999999998 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.|..+.+||.-.+ +.+..+.+|++.|+|+..+|||..+++||.|..++||.
T Consensus 293 ~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999887 78999999999999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=275.59 Aligned_cols=297 Identities=24% Similarity=0.374 Sum_probs=229.1
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
+..|...|..+|..++|+|.+.+|++|+.||.++|||+..+.+...|++|. +.|.++.|.+.....+|++|+.|++|
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g---GvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG---GVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC---ceEEEEEeCCccchhheeecCCCceE
Confidence 566888899999999999999999999999999999999999999999999 89999999655566789999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-------------------------------------
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY------------------------------------- 1149 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~------------------------------------- 1149 (1348)
++||+.+. .. +......|.+.|++ +.+.+++..
T Consensus 174 ~vwnl~~~--~t----cl~~~~~H~S~vts----L~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 174 RVWNLNDK--RT----CLHTMILHKSAVTS----LAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred EEEEcccC--ch----HHHHHHhhhhheee----eeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 99999751 11 22445666666666 444444444
Q ss_pred ---------EEEEECCCeEEEEECCCCceee-------------------------------------------------
Q 000697 1150 ---------LYASGEVSSIMLWDLEKEQQMV------------------------------------------------- 1171 (1348)
Q Consensus 1150 ---------Ll~gg~Dg~IrVWDl~t~~~~v------------------------------------------------- 1171 (1348)
++++|.+|.+++||.++++ ++
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~-~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ 322 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGK-CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY 322 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccch-hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence 4444444555555443322 00
Q ss_pred ------------------------------------eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCee
Q 000697 1172 ------------------------------------NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1215 (1348)
Q Consensus 1172 ------------------------------------~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~ 1215 (1348)
+.+.+|.+. |.++..+ ..|.+|++|+.|.++++|.+..+...
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~-vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA-VLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh-eeeeeec-ccCcEEEEecCCceEEEEEecCCcch
Confidence 011223332 5555322 35679999999999999988544433
Q ss_pred eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--c--ce----EEEecCCCCeEEEEEeCCCCEEE
Q 000697 1216 VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--D--AY----LTIDAHRGSLSALAVHRHAPIIA 1287 (1348)
Q Consensus 1216 v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~--~v----~t~~~h~~~VtsLa~spdg~~La 1287 (1348)
........+|.+.|.+++++.. +..+|+++|.|+++++|++...+ . .+ .+...|...|++++++|+.+++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhcccccccceeeeccc-CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 3333345689999999999877 68899999999999999998621 1 11 23457999999999999999999
Q ss_pred EEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|||.|++.+||+++ +....++.+ |. ..|+++.|++..+.|||+|.|++|+||+
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsG-H~-------RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSG-HT-------RGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred ecccccceeeecccCceEEEEeeC-Cc-------cceEEEEeccccceeEeccCCceEEEEE
Confidence 99999999999965 566778888 65 7899999999999999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=276.40 Aligned_cols=281 Identities=19% Similarity=0.319 Sum_probs=243.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...+..++|||..++++++-..|.|++||++-+.++..|..|+ ++|..++| ++.+.++++||+|..|+||+...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC---Cccceeee--cCCCCeEEecCCccEEEEEeccc-
Confidence 4679999999999999999999999999999999999999999 99999999 78999999999999999999854
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
.++. .++.||..-|+. +.|++.-..|+++++|.+|+||+..+.+ |+..+.+|... |.|- .+.|..+.
T Consensus 83 ---rrcl---ftL~GHlDYVRt----~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHY-VMcA-qFhptEDl 149 (1202)
T KOG0292|consen 83 ---RRCL---FTLLGHLDYVRT----VFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHY-VMCA-QFHPTEDL 149 (1202)
T ss_pred ---ceeh---hhhccccceeEE----eeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceE-EEee-ccCCccce
Confidence 2222 568999999998 9999999999999999999999999999 99999999776 9998 67888999
Q ss_pred EEEEeCCCeEEEEECCCCCe-------------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1195 LAAGFVDGSVRLYDVRTPDM-------------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~-------------------------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
+++++-|.+|||||+..-++ -........||...|+.++|+|. -..|+||+.|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DD 227 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADD 227 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--cceEEecCCc
Confidence 99999999999999863110 00011135689999999999998 8999999999
Q ss_pred CcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEE
Q 000697 1250 GDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1250 G~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
..|++|.+...+ -.+.+.++|.+.|+++-|||+..++++.|.|++|+|||++ .+.+.+++. . .+..+.++
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-e-------ndRFW~la 299 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-E-------NDRFWILA 299 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-c-------CCeEEEEE
Confidence 999999998642 2455778999999999999999999999999999999965 566777765 2 26889999
Q ss_pred EeCCCCEEEEEECCCeE
Q 000697 1328 FHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1328 fspdg~~Latgs~Dg~I 1344 (1348)
-||..+++|+|...|.+
T Consensus 300 ahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ecCCcceeeeecCCceE
Confidence 99999999888655543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=244.58 Aligned_cols=254 Identities=21% Similarity=0.305 Sum_probs=216.3
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
....++++|. +.|+.++.. ..+.+.+++++.|.++.+|++...+ .+.-...+.+.||...|.. +..++++
T Consensus 6 ~l~~tl~gh~---d~Vt~la~~-~~~~~~l~sasrDk~ii~W~L~~dd--~~~G~~~r~~~GHsH~v~d----v~~s~dg 75 (315)
T KOG0279|consen 6 VLRGTLEGHT---DWVTALAIK-IKNSDILVSASRDKTIIVWKLTSDD--IKYGVPVRRLTGHSHFVSD----VVLSSDG 75 (315)
T ss_pred eeeeeecCCC---ceEEEEEee-cCCCceEEEcccceEEEEEEeccCc--cccCceeeeeeccceEecc----eEEccCC
Confidence 4456788999 999999984 3467899999999999999997632 2222223678999999998 7888999
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
.+.++++.||++++||+.+++ ..+.+.+|... |.++ .++++.+.+++|+.|.+|++|+..... ..... ...|.+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~d-Vlsv-a~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~--~~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGE-STRRFVGHTKD-VLSV-AFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIH--EDSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCc-EEEEEEecCCc-eEEE-EecCCCceeecCCCcceeeeeeecccE-EEEEe--cCCCcC
Confidence 999999999999999999998 89999999887 9999 788999999999999999999998765 33222 223379
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLG 1306 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~ 1306 (1348)
+|.+++|+|.....+|++++.|++|++||+++. +....+.+|.+.++.++++|||.++++|+.||.+.+||+ +++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 999999999844789999999999999999987 788999999999999999999999999999999999995 567766
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.. ...|.+++|+|+.-.|+.+. +..|+|||
T Consensus 229 sl~a---------~~~v~sl~fspnrywL~~at-~~sIkIwd 260 (315)
T KOG0279|consen 229 SLEA---------FDIVNSLCFSPNRYWLCAAT-ATSIKIWD 260 (315)
T ss_pred eccC---------CCeEeeEEecCCceeEeecc-CCceEEEe
Confidence 6653 37899999999988887765 55699997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=270.50 Aligned_cols=288 Identities=16% Similarity=0.258 Sum_probs=239.0
Q ss_pred ccccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000697 1027 IACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1104 (1348)
+..|. .|..+|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|. .+|.+++| +.+|..++++|.|+
T Consensus 207 ~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~--s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASF--NNCGTSFLSASFDR 280 (503)
T ss_pred eeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhc--cccCCeeeeeecce
Confidence 44553 4678999999999 888999999999999999875 89999999999 99999999 78999999999999
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
.|++||.++ |+... .-|.+.+.. ++.|+|++ ..+++|+.|+.|+.||+++++ .++++..|-+. |.
T Consensus 281 ~lKlwDtET--G~~~~-------~f~~~~~~~---cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~-i~ 346 (503)
T KOG0282|consen 281 FLKLWDTET--GQVLS-------RFHLDKVPT---CVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGA-IL 346 (503)
T ss_pred eeeeecccc--ceEEE-------EEecCCCce---eeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhh-ee
Confidence 999999987 44321 123333322 48999998 678888899999999999999 88888877766 99
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1261 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-- 1261 (1348)
.+. +-++|..|++.+.|++++||+.+.+-.+...... +.....++..+|. +.++++-+.|..|.+|.+...-
T Consensus 347 ~i~-F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---~~hsmP~~~~~P~--~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 347 DIT-FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---EMHTMPCLTLHPN--GKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeE-EccCCceEeeeccCccEEEEEcCCCccchhhcch---hhccCcceecCCC--CCeehhhccCceEEEEeccccccc
Confidence 994 5578999999999999999999987633322211 2245778999999 9999999999999999976431
Q ss_pred cceEEEecCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEE
Q 000697 1262 DAYLTIDAHR--GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAA 1337 (1348)
Q Consensus 1262 ~~v~t~~~h~--~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Lat 1337 (1348)
...+.+.+|. +.-..+.|||||.+|++|+.||.+.+||. +.+.+..++. |+ +++..+.|||.. ..+||
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~-------~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HD-------QPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CC-------cceEEEEecCCCcceeEe
Confidence 3445677774 55678899999999999999999999994 5677778888 65 899999999987 68999
Q ss_pred EECCCeEEEcC
Q 000697 1338 GSADACVSIHS 1348 (1348)
Q Consensus 1338 gs~Dg~I~IWd 1348 (1348)
|+.||.|++|+
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=239.09 Aligned_cols=289 Identities=18% Similarity=0.339 Sum_probs=231.7
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCC---cEEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1033 RFEKGTKTALLQPF-SPIVVAADENERIKIWNYEED---TLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1033 ~~~~~I~sl~fspd-g~~Latgs~dg~I~VWd~~t~---~~l~~~-~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
.|.+.+..++|||- |..||+++.|..|+||+...+ .+...+ .+|. ..|.+++| +|.|++|++||.|.++.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk---rsVRsvAw--sp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK---RSVRSVAW--SPHGRYLASASFDATVV 86 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch---heeeeeee--cCCCcEEEEeeccceEE
Confidence 45568999999998 889999999999999998853 333333 3566 89999999 78999999999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL 1185 (1348)
||.-.. +..+.+ .++.||...|++ ++|+.+|.+|++++.|+.|-||.+..+. .+...++.|... |..+
T Consensus 87 Iw~k~~--~efecv---~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-VK~V 156 (312)
T KOG0645|consen 87 IWKKED--GEFECV---ATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-VKHV 156 (312)
T ss_pred EeecCC--CceeEE---eeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-ccEE
Confidence 999865 666665 678999999999 9999999999999999999999987432 377888888877 8888
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
.++|...+|++++.|.+|++|+-.....-... ..+.+|...|.+++|++. |..|++++.|++|+||-....
T Consensus 157 -~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~-~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~~~----- 227 (312)
T KOG0645|consen 157 -IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV-QTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLYTD----- 227 (312)
T ss_pred -EEcCCcceeEEeccCCeEEEEeecCCCCeeEE-EEecCccceEEEEEecCC--CceEEEecCCcceEeeeeccC-----
Confidence 67788899999999999999987743322222 255678899999999999 999999999999999987643
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE-EEEeccCCcccccccCCeEEEEEeCC-CCEEEEEECCCe
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADAC 1343 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l-~~i~~~h~~f~~~~~~~Vtslafspd-g~~Latgs~Dg~ 1343 (1348)
.-..|...+..+.|. ...||+++.|+.|++|.....+. ..+.. -....+.|...|++++|.|. ...|++|+.||.
T Consensus 228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 112367889999998 56899999999999998432110 00000 00011245579999999995 689999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|++|.
T Consensus 305 v~~W~ 309 (312)
T KOG0645|consen 305 VNFWE 309 (312)
T ss_pred EEEEE
Confidence 99994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=257.62 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=234.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|...|.-+.||++|++||+|+.|.+..||++... +..+++.+|. .+|..+.| +||+++|++++.|..+++|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~w--SPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMW--SPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc---CceEEEEE--CCCCCeEEecCchHheeec
Confidence 35688999999999999999999999999987654 4577888999 89999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
|+.+ |..... --.++...+.+ ++|.||+..+++|+.|+.|..||+..+. ...+++-....|.++ ...
T Consensus 297 Dv~t--gd~~~~----y~~~~~~S~~s----c~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl-ait 363 (519)
T KOG0293|consen 297 DVDT--GDLRHL----YPSGLGFSVSS----CAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL-AIT 363 (519)
T ss_pred cCCc--chhhhh----cccCcCCCcce----eEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE-EEc
Confidence 9977 332211 01223344555 8999999999999999999999998765 666776666679999 778
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
+||..+++.+.|..|++|+..+... ...... ..+|++.+++.+ ++++++.-.+..|++||+... ..++.+.+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lise----~~~its~~iS~d--~k~~LvnL~~qei~LWDl~e~-~lv~kY~G 435 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVD-RGLISE----EQPITSFSISKD--GKLALVNLQDQEIHLWDLEEN-KLVRKYFG 435 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhh-hccccc----cCceeEEEEcCC--CcEEEEEcccCeeEEeecchh-hHHHHhhc
Confidence 8999999999999999999987652 222222 378999999998 999999999999999999976 78888888
Q ss_pred CCCC--eEEEEEeC-CCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeE
Q 000697 1270 HRGS--LSALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1344 (1348)
Q Consensus 1270 h~~~--VtsLa~sp-dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I 1344 (1348)
|+.. +-.-+|-- +..++|+||.|+.|+||+ .+|+.+..+.+ |. ..|++++|+|.. .++|+||.||+|
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs-------~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HS-------KTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-Cc-------ceeeEEecCCCCHHHhhccCCCCeE
Confidence 8653 33334443 347999999999999999 78999999999 76 899999999987 689999999999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
+||.
T Consensus 508 RIWg 511 (519)
T KOG0293|consen 508 RIWG 511 (519)
T ss_pred EEec
Confidence 9994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=237.98 Aligned_cols=277 Identities=17% Similarity=0.277 Sum_probs=235.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.+++.|.++.|+-||++.++++.|.+|++||...|.+++++.+|. ..|..++. +.|...+++|+.|..|.+||+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC---ceeeeccc--cccccccccCCCCceEEEEEcc
Confidence 356899999999999999999999999999999999999999999 89999998 6789999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
+ |+.. +.+.+|...|+. +.|+.+...+++|+.|.++++||.++.. ++++.+....+. |.++. ..
T Consensus 90 T--Gkv~-----Rr~rgH~aqVNt----V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-V~Si~---v~ 154 (307)
T KOG0316|consen 90 T--GKVD-----RRFRGHLAQVNT----VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-VSSID---VA 154 (307)
T ss_pred c--Ceee-----eecccccceeeE----EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-eeEEE---ec
Confidence 7 5433 568999999998 9999999999999999999999988643 277777777666 88883 35
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
+..+++|+.||++|.||+|.+......+ ..+|++++|+++ ++..+.++.|+++++.|-.++ +.+..+++|.
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~------g~pit~vs~s~d--~nc~La~~l~stlrLlDk~tG-klL~sYkGhk 225 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYF------GHPITSVSFSKD--GNCSLASSLDSTLRLLDKETG-KLLKSYKGHK 225 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhc------CCcceeEEecCC--CCEEEEeeccceeeecccchh-HHHHHhcccc
Confidence 7899999999999999999988333222 368999999999 999999999999999999998 8999999997
Q ss_pred CCeE--EEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCC-eEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1272 GSLS--ALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS-VNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1272 ~~Vt--sLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~-Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..-. ..++......+++||+||.|++|| .++..+..+.. +. .. |.++++||...-|+++. ++.+..|
T Consensus 226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~-------~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VS-------TVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CC-------ceeEEeeecccCccceeEec-CCceece
Confidence 6443 445666777999999999999999 67777777776 44 44 89999999987777775 3444444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=264.73 Aligned_cols=242 Identities=21% Similarity=0.366 Sum_probs=211.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|...|+++.|+++|.++++|+.+|.|++|+..- ..++.++.|. ...|++++| ++++..++++++||+|+|||..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh--~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHH--AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhh--hhhhheecc--CCCCceeEEecCCCeEEEEecc
Confidence 4678999999999999999999999999998763 3344455443 168999999 7899999999999999999987
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .+.+. .+.+|.-.|++ ++|+|..+.|++||.|..|++||.+++. |+.++..|... |..+ .+++++
T Consensus 211 ~--~kee~-----vL~GHgwdVks----vdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKnt-Vl~~-~f~~n~ 276 (464)
T KOG0284|consen 211 M--PKEER-----VLRGHGWDVKS----VDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNT-VLAV-KFNPNG 276 (464)
T ss_pred C--Cchhh-----eeccCCCCcce----eccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccce-EEEE-EEcCCC
Confidence 6 33343 37899999998 9999999999999999999999999999 99999999887 9999 678899
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1271 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~ 1271 (1348)
++|++++.|..+++||+|+.+. +. ..++|+..|+++.|+|- ...+|.+|+.||.|..|.+... +++..+ .+|.
T Consensus 277 N~Llt~skD~~~kv~DiR~mkE-l~---~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd 350 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKE-LF---TYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHD 350 (464)
T ss_pred CeeEEccCCceEEEEehhHhHH-HH---Hhhcchhhheeeccccc-cccceeeccCCCceEEEecccc-ccccCCCcccc
Confidence 9999999999999999996652 33 45678899999999998 7889999999999999999855 455444 4799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.|++++|||-|.+||+|+.|+++++|.
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999999999999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=255.93 Aligned_cols=275 Identities=17% Similarity=0.288 Sum_probs=224.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+|+|+.+ |+..+++|..|.+|+|||..+..+++.+.+|. +.|.|+.| +...+++|+.|.+|+|||+.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy----d~rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT---GSVLCLQY----DERVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCC---CcEEeeec----cceEEEecCCCceEEEEeccC-
Confidence 468999988 45689999999999999999999999999999 99999999 667999999999999999976
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEecCCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+++ + +++-+|...|.. +.|+ ++++++++.|.+|.|||+.... .+.+.+.+|... |+.+.+ +.
T Consensus 267 -ge~--l---~tlihHceaVLh----lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvVdf---d~ 330 (499)
T KOG0281|consen 267 -GEP--L---NTLIHHCEAVLH----LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF---DD 330 (499)
T ss_pred -Cch--h---hHHhhhcceeEE----EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeeecc---cc
Confidence 432 2 567788888877 6665 7899999999999999998654 144556677665 888833 46
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+++++++.|.+|++|++.+.+ .++++ .+|...|-|+.+. ++++++|+.|.+|++||+..+ .+++.+++|+.
T Consensus 331 kyIVsASgDRTikvW~~st~e-fvRtl---~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEe 401 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-FVRTL---NGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 401 (499)
T ss_pred ceEEEecCCceEEEEecccee-eehhh---hcccccceehhcc----CeEEEecCCCceEEEEecccc-HHHHHHhchHH
Confidence 799999999999999999988 66644 4777899988874 889999999999999999998 89999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEecc-CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYH-HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~-h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-|.++.|. .+.+++|+.||+|+|||+. +......... .--....|.+.|..+.| |...+++++.|.+|.|||
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999995 5789999999999999953 2211100000 00002246689999999 556788999999999997
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=250.75 Aligned_cols=244 Identities=23% Similarity=0.388 Sum_probs=216.6
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
..+.+++|. +.|.|+++ +|.+.++++|+.|++|+|||+.+ ++.++. +.||...|+. +++++...
T Consensus 143 l~rVi~gHl---gWVr~vav--dP~n~wf~tgs~DrtikIwDlat--g~Lklt-----ltGhi~~vr~----vavS~rHp 206 (460)
T KOG0285|consen 143 LYRVISGHL---GWVRSVAV--DPGNEWFATGSADRTIKIWDLAT--GQLKLT-----LTGHIETVRG----VAVSKRHP 206 (460)
T ss_pred ehhhhhhcc---ceEEEEee--CCCceeEEecCCCceeEEEEccc--CeEEEe-----ecchhheeee----eeecccCc
Confidence 345578888 89999999 78899999999999999999987 655544 8899999999 89999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
++++++.|+.|+.||++..+ .++.+.+|-.+ |.|+ ...|.-+.|++|+.|.++||||+|+.. .+.. +.||...
T Consensus 207 YlFs~gedk~VKCwDLe~nk-vIR~YhGHlS~-V~~L-~lhPTldvl~t~grDst~RvWDiRtr~-~V~~---l~GH~~~ 279 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNK-VIRHYHGHLSG-VYCL-DLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHV---LSGHTNP 279 (460)
T ss_pred eEEEecCCCeeEEEechhhh-hHHHhccccce-eEEE-eccccceeEEecCCcceEEEeeecccc-eEEE---ecCCCCc
Confidence 99999999999999999999 99999999887 9999 667888999999999999999999988 4443 4578899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEE
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGT 1307 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~ 1307 (1348)
|.++.++|. ...+++||.|++|++||++.+ +...++..|+..+.+++.||....+|+++.| .|+-|+ ..|..+..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 999999998 889999999999999999998 7888899999999999999999999999987 589999 56777777
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+ |. +-|++++.+.|+ ++++|+..|.+.+||
T Consensus 356 lsg-h~-------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 LSG-HN-------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ccc-cc-------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 776 54 789999988776 677899999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=248.07 Aligned_cols=290 Identities=19% Similarity=0.302 Sum_probs=232.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee---CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~---~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|..-|.|+.|+|||.++++++.||+|.|||=.+|+.+..+. +|. +.|.++.| +||+..++|++.|.+++||
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk---GsIfalsW--sPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK---GSIFALSW--SPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc---ccEEEEEE--CCCCceEEEecCCceEEEE
Confidence 355679999999999999999999999999999999999998 666 89999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
|+.+. .++..|..-. .+....+-+-|. ++.|++.+-+|+|.+++..... ....+.+|... |+++ ..+
T Consensus 263 dVs~~----slv~t~~~~~----~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~-ITaL-tv~ 329 (603)
T KOG0318|consen 263 DVSTN----SLVSTWPMGS----TVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKS-ITAL-TVS 329 (603)
T ss_pred Eeecc----ceEEEeecCC----chhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccc-eeEE-EEc
Confidence 99762 3443332111 133323336676 7789999999999999999999 89999999887 9999 678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee----------eEeecCC------------------------CCC----------
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDML----------VCSTRPH------------------------TQQ---------- 1225 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~----------v~~~~~~------------------------~~h---------- 1225 (1348)
+++.+|++|+.||.|.-||..++... +..+... ..+
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 89999999999999999998754311 0000000 000
Q ss_pred ---------------------------------CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecCC
Q 000697 1226 ---------------------------------VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHR 1271 (1348)
Q Consensus 1226 ---------------------------------~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~ 1271 (1348)
.-...+++++|+ +..++.|+.||.|++|.+.... ........|.
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~--~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD--GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC--CCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 012347788888 9999999999999999998652 3334566799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++|++++++|++.+||+|...+.|.+||........-. ..-|.+.|.+++|+|+..++|||+-|..|.||+
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999999996654442211 122458999999999999999999999999995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=242.91 Aligned_cols=287 Identities=14% Similarity=0.238 Sum_probs=231.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.+|...+.+++.+|+.++++||+.|..-.||+..++.....+.+|. ..|+++.| +.+|.+|+||+.+|.|+||+.
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK---DSVt~~~F--shdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK---DSVTCCSF--SHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC---CceEEEEE--ccCceEEEecCCCccEEEEEc
Confidence 4577899999999999999999999999999999999999999999 99999999 899999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+ +..+.. +. ..+..+. -+.|+|.+..+++|+.||.|-+|.+.++. ..+.+.+|... +++= .+.|+
T Consensus 136 st--g~~~~~-----~~---~e~~die-Wl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~-ct~G-~f~pd 201 (399)
T KOG0296|consen 136 ST--GGEQWK-----LD---QEVEDIE-WLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSP-CTCG-EFIPD 201 (399)
T ss_pred cc--CceEEE-----ee---cccCceE-EEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCC-cccc-cccCC
Confidence 77 333222 22 1222222 28999999999999999999999999977 78888887655 7777 56678
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----------------C------------------------------C
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----------------T------------------------------Q 1224 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----------------~------------------------------~ 1224 (1348)
|+.+++|..||+|++||..++.+..+.-... . +
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 9999999999999999999887433222000 0 0
Q ss_pred CCCCeEEEEEecC-CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCC
Q 000697 1225 QVERVVGISFQPG-LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEG 1302 (1348)
Q Consensus 1225 h~~~I~sl~~sp~-~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g 1302 (1348)
+...+.++.+.|. ..-.+.++|+.||+|.|||+... .++..-.|...|+.+.|-+ ..+|++++.+|.|+.|| .+|
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 1111112222221 01356789999999999999965 4555556899999999998 78999999999999999 779
Q ss_pred ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1303 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1303 ~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+..+.+ |. ..|.+++.+|++++++|+|.|++.+||+
T Consensus 359 ~l~~~y~G-H~-------~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 359 QLKFTYTG-HQ-------MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ceEEEEec-Cc-------hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999998 65 8999999999999999999999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=264.07 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=238.3
Q ss_pred CCCeEEEEE-cCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALL-QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~f-spdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|.+|+| .|++++|+++++.+.+++|+..+..+. .+.+|. ..|.++.. ..+|.+|+||+.|.++++|++..
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~---e~vlSL~~--~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT---EAVLSLDV--WSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch---hheeeeee--cccCcEEEEecCCceEEEEEecC
Confidence 467999987 678889999999999999998876654 789999 89999993 25678999999999999999944
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCce----ee----eeecCCCCCCeEE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQ----MV----NPIPSSSDCSISA 1184 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~----~v----~~l~~~~~~~Vts 1184 (1348)
+..+. .+.....+|...|.+ ++++..+ ..++++|.|+++++|++...+. .+ .+...|.. .|+|
T Consensus 397 ~~~~~---~~~a~~~gH~~svga----va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-dIN~ 468 (775)
T KOG0319|consen 397 NCSKS---LCVAQANGHTNSVGA----VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-DINC 468 (775)
T ss_pred Ccchh---hhhhhhcccccccce----eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-cccc
Confidence 22322 234667899999988 5555444 3566678999999999987220 11 12234444 4999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
+ ...++..++++|+.|.+.++|++.... ... .+.||+..|.++.|++. .+.++|+|.|++|+||.+.+. .++
T Consensus 469 V-aia~ndkLiAT~SqDktaKiW~le~~~-l~~---vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~f-SCl 540 (775)
T KOG0319|consen 469 V-AIAPNDKLIATGSQDKTAKIWDLEQLR-LLG---VLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKIWSISTF-SCL 540 (775)
T ss_pred e-EecCCCceEEecccccceeeecccCce-EEE---EeeCCccceEEEEeccc--cceeEeccCCceEEEEEeccc-eee
Confidence 9 788999999999999999999999554 444 45688899999999998 999999999999999999998 899
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+++.+|...|..+.|-.+|+.|++++.||.|++|++ +++++.++.. |. ..|++++-++...+++||+.||.
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~-------DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HN-------DRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-cc-------ceeEEEeecCccceeEecCCCeE
Confidence 999999999999999999999999999999999994 6788888888 65 89999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=248.10 Aligned_cols=281 Identities=17% Similarity=0.325 Sum_probs=244.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEe--------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF--------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~--------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
+.+.|..|+|||.+|++|+.||-|.|||+.+|+..+.+ -.++ ..|.|+.| +.|..+|++|+.||.|+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~F--SRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISF--SRDSEMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEee--cccHHHhhccCcCCcEE
Confidence 56889999999999999999999999999999765543 3344 78999999 88999999999999999
Q ss_pred EEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
||++.+ |.+ .+.+. .|+..|++ +.|+.++..+++++.|.++|+--+.+++ ++..+++|+.. |+..
T Consensus 289 vWri~t--G~C-----lRrFdrAHtkGvt~----l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSy-vn~a- 354 (508)
T KOG0275|consen 289 VWRIET--GQC-----LRRFDRAHTKGVTC----LSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSY-VNEA- 354 (508)
T ss_pred EEEEec--chH-----HHHhhhhhccCeeE----EEEccCcchhhcccccceEEEeccccch-hHHHhcCcccc-ccce-
Confidence 999977 432 23343 78999988 9999999999999999999999999999 99999999876 8888
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+.++|+.+++++.||+|++|+.++.+ +..+++.. +...+|.++..-|. +...++++....+|.|.++. ++.+++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~-~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~q--GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPL-GTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNMQ--GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchh-hhhhccCC-CCcccceeEEEcCC-CCceEEEEcCCCeEEEEecc--ceEEee
Confidence 678899999999999999999999988 66667554 45678999999998 67889999999999999988 468888
Q ss_pred EecC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1267 IDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1267 ~~~h---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
+... .+..-+...+|.|.++.+.+.|+.++.|. .+|+.-.++.. |. ..|.+++-||+.+.||+-+.||
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hE-------kdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HE-------KDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cc-------ccccccccCcccchhhhhcccc
Confidence 7643 45677888999999999999999999999 67888778877 65 6788999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999994
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=233.82 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=227.4
Q ss_pred eEEEEEcCCCC-EEEEEE-------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1038 TKTALLQPFSP-IVVAAD-------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1038 I~sl~fspdg~-~Latgs-------~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
=.++.|||... +||++. ..|.+.|-+....+-+..+..-. -.+.+..++|. +...+.+++++.||++++|
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Ws-e~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWS-ENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeec-CCCcceEEEEecCceEEEe
Confidence 46789999654 555542 57899999987554444433221 11489999995 4566789999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... .+ +++.+++|...|.+ ++|++..+ .+++++.|++|++||..... .++++.+|... |....+.
T Consensus 89 d~~~~-s~-----Pi~~~kEH~~EV~S----vdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~-Iy~a~~s 156 (311)
T KOG0277|consen 89 DLTMP-SK-----PIHKFKEHKREVYS----VDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSC-IYQAAFS 156 (311)
T ss_pred ccCCC-Cc-----chhHHHhhhhheEE----eccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccE-EEEEecC
Confidence 96431 11 33668999999998 99988755 46666899999999999998 89999997665 9888777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+..+++|++++.||.+++||+|...+... + ..|...|.++.|+.. +.+.+++|+.|+.|+.||+|+.+.++..+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeE-E---EeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeec
Confidence 77899999999999999999997653332 3 355689999999987 789999999999999999999889999999
Q ss_pred cCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC-Cc-eEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeE
Q 000697 1269 AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLE-GE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1344 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~-g~-~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I 1344 (1348)
+|.-.|+.+.|+|+. .+||+++.|-+++|||.. +. .+.+..- |+ .-|.++.|++.. .++|+++.|+.+
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-Ht-------EFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HT-------EFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cc-------eEEeccccccccCceeeecccccce
Confidence 999999999999975 499999999999999944 33 3334443 55 568889998754 789999999999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
+||+
T Consensus 304 ~Vw~ 307 (311)
T KOG0277|consen 304 YVWN 307 (311)
T ss_pred eeec
Confidence 9996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=236.43 Aligned_cols=249 Identities=18% Similarity=0.327 Sum_probs=211.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
..+.+|. +.|..+.| +|+|.+|++||.|..|.+|+++...+. +-.+++|.+.|.. +.|..++..+
T Consensus 41 m~l~gh~---geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~----l~~~~d~s~i 105 (338)
T KOG0265|consen 41 MLLPGHK---GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVME----LHGMRDGSHI 105 (338)
T ss_pred hhcCCCc---ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEe----eeeccCCCEE
Confidence 3456787 89999999 789999999999999999998652221 2346799999988 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~ 1230 (1348)
+++|.|++|+.||+++++ +++.+++|.+. |+++.-...+..++.+|+.||++++||+|+.. .++++. .+..++
T Consensus 106 ~S~gtDk~v~~wD~~tG~-~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~----~kyqlt 178 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGK-RIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE----NKYQLT 178 (338)
T ss_pred EEecCCceEEEEecccce-eeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc----cceeEE
Confidence 999999999999999999 99999998776 88884333445678889999999999999887 455442 236899
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC----C-ceE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----G-EQL 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~----g-~~l 1305 (1348)
++.|... +..+.+|+-|+.|++||++.. ....++.+|.++|+.+..+++|.++.+-+.|.++++||+. + ..+
T Consensus 179 Av~f~d~--s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 179 AVGFKDT--SDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred EEEeccc--ccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 9999988 999999999999999999988 8999999999999999999999999999999999999954 3 447
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+.+ |..- -......++|+|++..+.+|+.|..+++||
T Consensus 256 ~if~g-~~hn---feknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 256 KIFQG-HIHN---FEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred EEeec-chhh---hhhhcceeeccCCCCccccccccceEEEee
Confidence 77777 4411 112456779999999999999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=262.98 Aligned_cols=253 Identities=21% Similarity=0.316 Sum_probs=218.4
Q ss_pred EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1052 AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1052 tgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
+++.|-.+.+-|-.++...+++.+|. ++|....| +|+.++|++++.|++||+|.+.+ .... -.+.||.
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~---GPVyg~sF--sPd~rfLlScSED~svRLWsl~t--~s~~-----V~y~GH~ 493 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHS---GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDT--WSCL-----VIYKGHL 493 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCC---Cceeeeee--cccccceeeccCCcceeeeeccc--ceeE-----EEecCCC
Confidence 44555557778877777888899999 99999999 79999999999999999999966 2222 3478999
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~ 1211 (1348)
.+|+. +.|+|.|-++++++.|++-++|...... +.+.+.+|-.. |.|+ .++|+.+++++|+.|.+||+||+.+
T Consensus 494 ~PVwd----V~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD-V~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 494 APVWD----VQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD-VDCV-SFHPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred cceee----EEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc-cceE-EECCcccccccCCCCceEEEEEcCC
Confidence 99999 8999999999999999999999999988 89999998777 9999 7889999999999999999999999
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~ 1291 (1348)
+. .++.+ .||.++|++++|+|. |++|++|+.||.|++||+.++ ..+..+.+|.+.|.++.|+.+|.+||+|+.
T Consensus 567 G~-~VRiF---~GH~~~V~al~~Sp~--Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 567 GN-SVRIF---TGHKGPVTALAFSPC--GRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred Cc-EEEEe---cCCCCceEEEEEcCC--CceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 98 67766 478899999999999 999999999999999999998 899999999999999999999999999999
Q ss_pred CCcEEEEEcC---Cc----------------------eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE
Q 000697 1292 KQLIKVFSLE---GE----------------------QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1338 (1348)
Q Consensus 1292 Dg~I~Vwd~~---g~----------------------~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg 1338 (1348)
|.+|++||+. +. .+.++. ....+|.++.|..-+-.|++|
T Consensus 640 DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~--------tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFY--------TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeee--------ecCceEEEEEEeccceeEEec
Confidence 9999999953 11 111111 244689999998777556655
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=238.42 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=231.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEecc
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
|...|.++... ++++++|++||.++|||.. |+....+.+|. ++|.+++|+... ....+++++.|.++++|...
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 45667777776 7899999999999999987 89999999999 899999987432 23479999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc------------------------
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------------------------ 1168 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~------------------------ 1168 (1348)
......+.. +.-.||...|.+ +..++++..+++|+.|.+|+||+..+..
T Consensus 178 ~~~~~~~~~---~~~~GHk~~V~s----Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 178 VGENKVKAL---KVCRGHKRSVDS----VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred CchhhhhHH---hHhcccccceeE----EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 633333322 445699999988 7778899999999999999999932211
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
.++..+.+|.+. |.++. +++ ...+++++-|.+|+.||+.++....... + ...++++..+|. .+.|++|+.
T Consensus 251 ~P~vtl~GHt~~-Vs~V~-w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~----~ksl~~i~~~~~--~~Ll~~gss 320 (423)
T KOG0313|consen 251 TPLVTLEGHTEP-VSSVV-WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-T----NKSLNCISYSPL--SKLLASGSS 320 (423)
T ss_pred CceEEecccccc-eeeEE-EcC-CCceEeecccceEEEEEeecccceeeee-c----CcceeEeecccc--cceeeecCC
Confidence 145566777665 99994 443 7789999999999999999988443332 3 268999999998 999999999
Q ss_pred CCcEEEEEcCCCC--cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCe
Q 000697 1249 AGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1249 DG~I~IWDlr~~~--~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
|..+++||.|+++ ....++.+|.+.|.++.|+|... .|++|+.|+++++||++ ..++..+.+ |. ..|
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~-------DKv 392 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HN-------DKV 392 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CC-------ceE
Confidence 9999999999764 45678889999999999999766 78999999999999954 347888888 65 899
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1324 NCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1324 tslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.++.|+ ++..+++||.|++|+|+.
T Consensus 393 l~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 393 LSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEecc-CCceEEeccCcceEEEec
Confidence 999997 466899999999999973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=246.30 Aligned_cols=277 Identities=17% Similarity=0.296 Sum_probs=234.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+.|.+++|+|..+ -+|+++ .-.+.||+..+....+++.-.. ..+.++.| ..||.+|++|+..|.|+|+|..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---cceeEEEe--ecCCeEEEccCCcCcEEEecccc
Confidence 37899999999887 355555 5679999998877777666666 78999999 68999999999999999999532
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+ ...+.+.+|..++.. +.|+++++.+++. ++|+.+++||+.+.. ...++.+|.+. |.|.++.+.++
T Consensus 100 ---r----~iLR~~~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDY-VR~g~~~~~~~ 166 (487)
T KOG0310|consen 100 ---R----VILRQLYAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDY-VRCGDISPAND 166 (487)
T ss_pred ---H----HHHHHHhhccCceeE----EEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcce-eEeeccccCCC
Confidence 1 123678899999988 8898888776665 577889999999998 66688999887 99998777788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++|+.||.||+||.|.....+..+ .|..+|-++.+-|. |..|++++. ..|++||+-++++.+.....|..
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lps--gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPS--GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCC--CCEEEEcCC-CeEEEEEecCCceehhhhhcccc
Confidence 899999999999999999885455444 56799999999998 999999885 47999999988777777777999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.|||+.+..++..|++|+-|+.|+||| .+-+.+..+++ .++|.+++.+|++..++.|..||.+.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999 45577777776 379999999999999999999998764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=232.53 Aligned_cols=279 Identities=19% Similarity=0.309 Sum_probs=235.8
Q ss_pred cCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fsp---dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.+|. +.|.+... +.+...-++++.|-+-+|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk---gavw~~~l--~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK---GAVWSATL--NKNATRAASAAADFTAKV 85 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC---cceeeeec--Cchhhhhhhhcccchhhh
Confidence 45678899999975 77799999999999999999999999999999 89999888 567778889999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||..+ +.. +. --.|..-|+. ++|+++..+|++||.++.+||||+++.+.+...+.+|.++ |..+.|+
T Consensus 86 w~a~t--gde-lh-----sf~hkhivk~----~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc 152 (334)
T KOG0278|consen 86 WDAVT--GDE-LH-----SFEHKHIVKA----VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWC 152 (334)
T ss_pred hhhhh--hhh-hh-----hhhhhheeee----EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEe
Confidence 99876 221 11 1246666666 9999999999999999999999999887567788888887 8888666
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
. ..+.|++.+.|++||+||.|++. .++.+.. ...|+++.++++ |++|.++. .+.|++||..+. .+++.++
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~----~s~VtSlEvs~d--G~ilTia~-gssV~Fwdaksf-~~lKs~k 222 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGT-EVQSLEF----NSPVTSLEVSQD--GRILTIAY-GSSVKFWDAKSF-GLLKSYK 222 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCc-EEEEEec----CCCCcceeeccC--CCEEEEec-CceeEEeccccc-cceeecc
Confidence 5 45677777999999999999998 5665533 378999999998 88776654 568999999988 6777776
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEE-eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTI-RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i-~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
. ...|.+...+|+..++++|+.|..++.|| .+|+.+..+ ++ | .++|.|+.|+|+|...|+||.||+|++
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-h-------~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-H-------FGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-C-------CCceEEEEECCCCceeeccCCCceEEE
Confidence 4 45699999999999999999999999999 678888775 55 3 489999999999999999999999999
Q ss_pred c
Q 000697 1347 H 1347 (1348)
Q Consensus 1347 W 1347 (1348)
|
T Consensus 294 W 294 (334)
T KOG0278|consen 294 W 294 (334)
T ss_pred E
Confidence 9
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=244.35 Aligned_cols=243 Identities=21% Similarity=0.364 Sum_probs=206.9
Q ss_pred CcccccccC----------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000697 1025 NPIACWDTR----------FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1025 ~~i~~Wd~~----------~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~ 1094 (1348)
.++++||.+ |.+.|.|+.|. .+.+++|+.|.+|+|||+++|+.++++-.|. ..|..+.| ..
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHc---eaVLhlrf----~n 287 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC---EAVLHLRF----SN 287 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhc---ceeEEEEE----eC
Confidence 346778765 45788888884 5699999999999999999999999999999 89999999 45
Q ss_pred CEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee
Q 000697 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1095 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
++++|++.|.+|.|||+.... -++..+.+.||...|+. ++|+ ++++++++.|.+|++|++.+.+ +++++
T Consensus 288 g~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNv----Vdfd--~kyIVsASgDRTikvW~~st~e-fvRtl 356 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTL 356 (499)
T ss_pred CEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheee----eccc--cceEEEecCCceEEEEecccee-eehhh
Confidence 899999999999999996522 23334678899999988 7775 5699999999999999999999 99999
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
.+|..+ |-|+ +-.++++++|+.|.+|++||+..+. +.+ ..+||+.-|.++.|. .+.+++|..||+|++
T Consensus 357 ~gHkRG-IACl---QYr~rlvVSGSSDntIRlwdi~~G~-cLR---vLeGHEeLvRciRFd----~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 357 NGHKRG-IACL---QYRDRLVVSGSSDNTIRLWDIECGA-CLR---VLEGHEELVRCIRFD----NKRIVSGAYDGKIKV 424 (499)
T ss_pred hccccc-ceeh---hccCeEEEecCCCceEEEEeccccH-HHH---HHhchHHhhhheeec----CceeeeccccceEEE
Confidence 999887 8777 4478999999999999999999998 554 445788999999996 569999999999999
Q ss_pred EEcCCCCc--------ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1255 LDIRNHKD--------AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1255 WDlr~~~~--------~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
||+..... ++.++..|.+.|..+.|. ...+++++.|.+|.|||+.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 99986532 456677899999999995 4678889999999999943
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=224.72 Aligned_cols=280 Identities=19% Similarity=0.333 Sum_probs=229.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|+.+++-+.++.+|++|.+++.|.+..||--.+|+.+.++.+|. +.|.|+.. +.+...++||+.|.++++||+.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT---GAVWCCDI--DWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC---ceEEEEEe--cCCcceeeeccccceeEEEEcC
Confidence 477899999999999999999999999999988999999999999 99999998 5689999999999999999998
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-----CCeEEEEECC-------CCceeeeeecCCCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLE-------KEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg~IrVWDl~-------t~~~~v~~l~~~~~~ 1180 (1348)
+ |++... -.....|+. +.|+.++.+++++.+ .+.|.++|++ .++ +...+..+.+.
T Consensus 83 t--Gk~la~------~k~~~~Vk~----~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~sk 149 (327)
T KOG0643|consen 83 T--GKQLAT------WKTNSPVKR----VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSK 149 (327)
T ss_pred C--CcEEEE------eecCCeeEE----EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccc
Confidence 7 544322 123455666 899998888887754 4679999998 445 67778877655
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
++.. .|.+-+..|++|..||.|..||.+++...+... +.|...|+.++++++ ..++++||.|.+-++||.++.
T Consensus 150 -it~a-~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d--~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 150 -ITSA-LWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRD--RTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred -eeee-eecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCC--cceEEecccCccceeeeccce
Confidence 7777 678899999999999999999999988666543 466789999999999 999999999999999999998
Q ss_pred CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE--------------E-cCCceEEEEeccCCcccccccCCeEE
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF--------------S-LEGEQLGTIRYHHPSFMAQKIGSVNC 1325 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vw--------------d-~~g~~l~~i~~~h~~f~~~~~~~Vts 1325 (1348)
+.++++.. ..+|++.+++|....++.|+.....-|- + +-.+.+..+++ |.++|++
T Consensus 223 -~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--------HFGPINs 292 (327)
T KOG0643|consen 223 -EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--------HFGPINS 292 (327)
T ss_pred -eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--------cccCcce
Confidence 78888874 5689999999987776666532211111 1 11233444444 5699999
Q ss_pred EEEeCCCCEEEEEECCCeEEEc
Q 000697 1326 LTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1326 lafspdg~~Latgs~Dg~I~IW 1347 (1348)
++|||+|+..++|+.||.|++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 9999999999999999999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=215.53 Aligned_cols=292 Identities=16% Similarity=0.224 Sum_probs=228.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
...|.+++|+|.|.+.++|+...+++|-.+..-. .-+.-+.|. +.|.|.+| +++|++|+|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk---gsiyc~~w--s~~geliat 106 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK---GSIYCTAW--SPCGELIAT 106 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---ccEEEEEe--cCccCeEEe
Confidence 3579999999999999999999999987543210 111223455 89999999 899999999
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe---cCCCeEEEE-E-CCCeEEEEECCCCceeeeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQSGYLYAS-G-EVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws---~~~~~Ll~g-g-~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
|+.|++|++...... .......--.+.-|.+.|+. ++|- ..++.|+++ | .|..|++-|..+++ ..+.+
T Consensus 107 gsndk~ik~l~fn~d--t~~~~g~dle~nmhdgtird----l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~ 179 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNAD--TCNATGHDLEFNMHDGTIRD----LAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHAL 179 (350)
T ss_pred cCCCceEEEEecccc--cccccCcceeeeecCCceee----eEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceee
Confidence 999999999877542 22211111235668888998 5553 234455554 3 56778888999999 89999
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-CC---CCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-TQ---QVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-~~---h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
.+|.+. |.++- +-++.+|++|+.|.+||+||+|-+. .+.+.... .+ ..+.|.++++.|. |+.|++|-.|.
T Consensus 180 sghtgh-ilaly--swn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps--grll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGH-ILALY--SWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS--GRLLASGHADS 253 (350)
T ss_pred cCCccc-EEEEE--EecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC--cceeeeccCCC
Confidence 999887 98883 4478999999999999999999887 45544221 11 2367999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
...+||+|.+ .+++.+..|...|+|+.|+|...++.+|+.|..|++-|+.|..-..+.. -..+.|...+..+.|||
T Consensus 254 sc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~---~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 254 SCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI---MVVAEHKDKAIQCRWHP 329 (350)
T ss_pred ceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce---EEEEeccCceEEEEecC
Confidence 9999999988 8999999999999999999999999999999999999988765433211 01123457888999999
Q ss_pred CCCEEEEEECCCeEEEcC
Q 000697 1331 YQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1331 dg~~Latgs~Dg~I~IWd 1348 (1348)
..-.+++.+.|.++.+|.
T Consensus 330 ~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWA 347 (350)
T ss_pred ccceeeeccCcceEEEec
Confidence 999899999999999993
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=242.18 Aligned_cols=280 Identities=21% Similarity=0.362 Sum_probs=227.8
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|..+|.|++=+|.. ..+++|+.||.|+|||+.+.++..+|+.|. +.|..|++. .+.++++|+|.+|+.|.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~----~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVT----QTSFFTVGDDKTVKQWK 135 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEec----ccceEEecCCcceeeee
Confidence 3467899999999987 689999999999999999999999999999 899999992 37899999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+... .+ +++.+ ...+.+ ++-+..+..++++|. .|-|||..... ++..+.-..+. |.++.+.+.
T Consensus 136 ~~~~-----p~---~tilg-~s~~~g----Idh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dt-i~svkfNpv 198 (433)
T KOG0268|consen 136 IDGP-----PL---HTILG-KSVYLG----IDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADS-ISSVKFNPV 198 (433)
T ss_pred ccCC-----cc---eeeec-cccccc----cccccccccccccCc--eeeecccccCC-ccceeecCCCc-eeEEecCCC
Confidence 8541 11 22221 122222 222223444555443 49999999999 99999988787 999977766
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
...+|+++..|++|.+||+|...+..+.... ..-+.|+|+|. +-.+++|++|..+..||++....++....+|
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeeee-----ccccceecCcc--ccceeeccccccceehhhhhhcccchhhccc
Confidence 7788888889999999999998855444322 34678999998 9999999999999999999988999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.|.+++|+|.|+-+++||.|.+|+||..+...-..+ + |+ .+...|.|+.|+-|.+++++||.|+.|++|.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-Y-ht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-Y-HT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhh-h-hH----hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999999999999999654322222 2 32 3567899999999999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=220.40 Aligned_cols=283 Identities=16% Similarity=0.262 Sum_probs=235.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC--CCeEEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIRIW 1109 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~--DG~IrIW 1109 (1348)
......|.++.|+.+|.+|+++++|.+++|||..+++.++++..+. ..|..++|. .....++.++. |.+||.-
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Ft--h~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFT--HHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEe--cCCceEEEccCCCCCceEEE
Confidence 3366889999999999999999999999999999999999999887 789999994 45556666665 8899999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
++.+ . +.+ +.+.||...|.+ ++.+|.+..+++++.|++|++||++..+ |...+..... -+++++
T Consensus 86 sl~d--N--kyl---RYF~GH~~~V~s----L~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~----pi~AfD 149 (311)
T KOG1446|consen 86 SLHD--N--KYL---RYFPGHKKRVNS----LSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGR----PIAAFD 149 (311)
T ss_pred Eeec--C--ceE---EEcCCCCceEEE----EEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCC----cceeEC
Confidence 9976 2 233 679999999999 8888999999999999999999999888 7776665322 234678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC-CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTP-DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~-~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
|.|-++++|...+.|++||+|.- +....++....+.....+.+.|+|+ |+.|+.++..+.+.+.|.-.+ ....++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G-~~~~tfs 226 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDG-TVKSTFS 226 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCC-cEeeeEe
Confidence 99999999999889999999964 3344555333344578999999999 999999999999999999988 7888888
Q ss_pred cCCCCe---EEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1269 AHRGSL---SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1269 ~h~~~V---tsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
.+...- -...|.|+++++.+|+.||+|.+|+ -+|+.+..+++ . +.+++.++.|+|.-.++++++ ..+
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~------~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-P------NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-C------CCCCccccccCCceeeeeecC--ceE
Confidence 775432 5778999999999999999999999 56888888877 2 458999999999988888774 567
Q ss_pred EEc
Q 000697 1345 SIH 1347 (1348)
Q Consensus 1345 ~IW 1347 (1348)
.+|
T Consensus 298 ~fw 300 (311)
T KOG1446|consen 298 VFW 300 (311)
T ss_pred EEE
Confidence 776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=271.13 Aligned_cols=266 Identities=16% Similarity=0.231 Sum_probs=206.7
Q ss_pred CCcEEEEECCCCcEEEEe-----eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeE-EeeeecccC
Q 000697 1056 NERIKIWNYEEDTLLNSF-----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL-VTAFSSIQG 1129 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~-----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l-vs~~~~l~~ 1129 (1348)
+|.+++|+..+.+....+ ..|. ..|++++| ++++++|++|+.||.|+||+.......... ......+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~- 530 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSS---NLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA- 530 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCC---CcEEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-
Confidence 455666666544333322 3355 78999999 789999999999999999997531100000 00001122
Q ss_pred CCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1130 HKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1130 h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
+...+.+ ++|++. +..+++++.||+|++||+.+++ .+..+.+|.+. |+++.+.+.++.+|++|+.||.|++||
T Consensus 531 ~~~~v~~----l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 531 SRSKLSG----ICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred ccCceee----EEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 2234444 889764 6788888999999999999988 88888888765 999965556889999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
++++. ....+.. ...|.++.|++. ++.+|++|+.||.|++||+++...++.++.+|...|+++.|. ++.+|++
T Consensus 605 ~~~~~-~~~~~~~----~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGV-SIGTIKT----KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCc-EEEEEec----CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 99877 4444422 257999999664 499999999999999999997645678888999999999997 6789999
Q ss_pred EeCCCcEEEEEcC-------CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GSAKQLIKVFSLE-------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~-------g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.|++|++||+. +..+..+.+ |. ..+.+++|++++.+|++|+.||.|++|+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~-------~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMG-HT-------NVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcC-CC-------CCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999999964 245667776 54 7889999999999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=222.39 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=209.1
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+..+..+. +.|.++.| +-||++.+|++.|.+|++|+... ..++ +++.+|...|.. ++-+.++.
T Consensus 9 r~~~l~~~q---gaV~avry--N~dGnY~ltcGsdrtvrLWNp~r----g~li---ktYsghG~EVlD----~~~s~Dns 72 (307)
T KOG0316|consen 9 RLSILDCAQ---GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLR----GALI---KTYSGHGHEVLD----AALSSDNS 72 (307)
T ss_pred hceeecccc---cceEEEEE--ccCCCEEEEcCCCceEEeecccc----ccee---eeecCCCceeee----cccccccc
Confidence 455667777 89999999 78999999999999999999854 3344 678999999988 66677899
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-eeeEeecCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~~h~~ 1227 (1348)
.++++|.|+.|.+||+++++ .++.+.+|... |+.+ .++.+...+++|+.|.++++||.|+.. .+++++.. -..
T Consensus 73 kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~aq-VNtV-~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D 146 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGK-VDRRFRGHLAQ-VNTV-RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKD 146 (307)
T ss_pred ccccCCCCceEEEEEcccCe-eeeecccccce-eeEE-EecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcC
Confidence 99999999999999999999 99999998776 9999 677889999999999999999999764 24554433 348
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLG 1306 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~ 1306 (1348)
.|.++.+. +..|++|+.||+++.||+|.+ ......- ..+|+++.|++++....+++.|+++++.| .+|+.+.
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 89999986 569999999999999999988 4444443 45799999999999999999999999999 7799999
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..++ |. ....-...+++.....+++|++||.|.+||
T Consensus 220 sYkG-hk-----n~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 220 SYKG-HK-----NMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred Hhcc-cc-----cceeeeeeeecccceeEEeccCCceEEEEE
Confidence 9999 76 234556778888889999999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=246.94 Aligned_cols=280 Identities=15% Similarity=0.254 Sum_probs=238.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|...|.+++++.+...+++|+ .+.|+||+..+.++++++... -+.+..|+ |.+.++++|...|.+.+||+..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFV--PGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred chhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEec--CCCceEEEeccCCceEEEEeeh
Confidence 346799999999988888887 789999999999999998765 47888895 6889999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce----eeeeecCC------CCCCeE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ----MVNPIPSS------SDCSIS 1183 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~----~v~~l~~~------~~~~Vt 1183 (1348)
..++ ..+..|.+.+++ ++.+|++..+++||.|.+|++||..-... ..+.+.-+ -...|.
T Consensus 444 ----~~l~---Eti~AHdgaIWs----i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 444 ----ASLV---ETIRAHDGAIWS----ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred ----hhhh---hhhhccccceee----eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 2223 346789999998 88889999999999999999999752110 11111111 122389
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
|+ ..+|+|+++++|--|.+|+||-+.+-+-.+. .-||+-+|.|+.++|+ +..++|||.|..|++|-+.-+ .+
T Consensus 513 ~v-~~Spdgk~LaVsLLdnTVkVyflDtlKFfls----LYGHkLPV~smDIS~D--SklivTgSADKnVKiWGLdFG-DC 584 (888)
T KOG0306|consen 513 CV-SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS----LYGHKLPVLSMDISPD--SKLIVTGSADKNVKIWGLDFG-DC 584 (888)
T ss_pred EE-EEcCCCcEEEEEeccCeEEEEEecceeeeee----ecccccceeEEeccCC--cCeEEeccCCCceEEeccccc-hh
Confidence 99 7899999999999999999999998774443 3488899999999999 999999999999999999988 89
Q ss_pred eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1264 YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.+.+-+|.+.|.++.|-|....+.++|.|+.|+-|| ..-+.+..+.+ |. ..|+|++.+|+|.+++++|.|.
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-H~-------~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-HH-------SEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-ch-------heeeeeEEcCCCCeEEeccCCc
Confidence 999999999999999999999999999999999999 55677888887 44 7899999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
+|++|.
T Consensus 657 sIRlwE 662 (888)
T KOG0306|consen 657 SIRLWE 662 (888)
T ss_pred eeEeee
Confidence 999994
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=241.44 Aligned_cols=279 Identities=18% Similarity=0.337 Sum_probs=231.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.+.. +.|+++.| ..++..+++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~--d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL---GNITSIDF--DSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC---CCcceeee--cCCCceEEeecCCCceeeeec
Confidence 55789999999999999999999999999987655 666777776 88999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .++. .++.+|...|++ +.|......+++|+.|.+|+.||+.+.. |.+++-..+. +..|.+ .
T Consensus 249 d~----~r~~---~TLsGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S~--cnDI~~-~-- 311 (459)
T KOG0288|consen 249 DS----LRLR---HTLSGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGSQ--CNDIVC-S-- 311 (459)
T ss_pred cc----hhhh---hhhcccccceee----ehhhccccceeeccccchhhhhhhhhhh-eecccccccc--ccceEe-c--
Confidence 55 3333 568899999998 7777766678999999999999999988 8887665332 456632 2
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH- 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h- 1270 (1348)
+..+++|..|+.||+||.|+.. ........ +.|+++..+++ +..+.+++.|.++++.|+++. +....+.+.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g----g~vtSl~ls~~--g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g 383 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSAD-KTRSVPLG----GRVTSLDLSMD--GLELLSSSRDDTLKVIDLRTK-EIRQTFSAEG 383 (459)
T ss_pred ceeeeecccccceEEEeccCCc-eeeEeecC----cceeeEeeccC--CeEEeeecCCCceeeeecccc-cEEEEeeccc
Confidence 5678999999999999999988 45544222 69999999998 999999999999999999987 666666643
Q ss_pred ---CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1271 ---RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1271 ---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
....+.+.|+|++.|+|+||.||.|+||++ +|+....+.. .. ....|++++|+|.|..|++++.++.+.+
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~-----s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-ST-----SNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CC-----CCcceEEEEEcCCCchhhcccCCcceEe
Confidence 234889999999999999999999999994 5666666665 22 1237999999999999999999999999
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
|-
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 93
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=231.78 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=235.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC----Ce
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~ 1105 (1348)
.+|..+++...|+|.|-++|+|+..|+|||||+...+. ..+|+.-. ++|.++.| +.++..|++.++. |.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~W--d~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA---GPIKDISW--DFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc---ccccccee--CCCCcEEEEEecCccceeE
Confidence 34667899999999999999999999999999876432 34566666 89999999 7888888877653 56
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
+..||-.+.. ..+.+|...+.+ ++|-|... .++++++|+.|-+|+-.-.+ ...++..|+.. |.|
T Consensus 131 ~F~~DSG~Sv---------Gei~GhSr~ins----~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskF-V~~ 195 (603)
T KOG0318|consen 131 VFLWDSGNSV---------GEITGHSRRINS----VDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKF-VNC 195 (603)
T ss_pred EEEecCCCcc---------ceeeccceeEee----eeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccc-eee
Confidence 8888875422 236899999988 88888776 47778899999999977666 66777888876 999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
+ -++|+|..|++.+.||+|.+||=.+++ .+..+....+|++.|.+++|+|+ +..+++++.|.++||||+.+. +++
T Consensus 196 V-RysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~-slv 270 (603)
T KOG0318|consen 196 V-RYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVSTN-SLV 270 (603)
T ss_pred E-EECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEeecc-ceE
Confidence 9 788999999999999999999999998 66666667789999999999999 999999999999999999998 788
Q ss_pred EEEecCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1265 LTIDAHR---GSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1265 ~t~~~h~---~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+++.... +..-.+-|. +..|++.+.+|.|.+++ -++..+..+.+ |. ..|+++..++++.+|.+|+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G-Hn-------K~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG-HN-------KSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc-cc-------cceeEEEEcCCCCEEEeecc
Confidence 8887432 234455565 56888999999999999 45677788888 65 89999999999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
||.|.-|+
T Consensus 341 DG~I~~W~ 348 (603)
T KOG0318|consen 341 DGHINSWD 348 (603)
T ss_pred CceEEEEe
Confidence 99999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=218.21 Aligned_cols=277 Identities=17% Similarity=0.257 Sum_probs=228.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
...+.+++|+.+|..|++|+.|+++.||+++.+..... ..+|. +.|-.++|. .+...++++++.|.+|++||+.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---~svdql~w~-~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---DSVDQLCWD-PKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---cchhhheeC-CCCCcceEEecCCceEEEEEec
Confidence 46799999999999999999999999999997755544 45566 789999995 4677899999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ++.... +...... ..+.|+|+++++++++.|..|...|.++.+ .+...+... .+..+++. .++
T Consensus 96 ~--~k~~~~-----i~~~~en-----i~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~~--e~ne~~w~-~~n 159 (313)
T KOG1407|consen 96 S--GKCTAR-----IETKGEN-----INITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFKF--EVNEISWN-NSN 159 (313)
T ss_pred c--CcEEEE-----eeccCcc-----eEEEEcCCCCEEEEecCcccEEEEEecccc-eeehhcccc--eeeeeeec-CCC
Confidence 7 433322 1111111 237999999999999999999999999887 665554322 36777444 778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
++|+.....|.|.|...-.-+ .+. ..+.|.....||.|+|+ |+++++|+.|..+.+||+... -+++.+.-+.-
T Consensus 160 d~Fflt~GlG~v~ILsypsLk-pv~---si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~EL-iC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLK-PVQ---SIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDEL-ICERCISRLDW 232 (313)
T ss_pred CEEEEecCCceEEEEeccccc-ccc---ccccCCcceEEEEECCC--CceEeeccccceeeccChhHh-hhheeeccccC
Confidence 888888889999999887666 444 34467799999999999 999999999999999999988 89999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC---------C
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD---------A 1342 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D---------g 1342 (1348)
+|+.+.|+.+|++||+||.|..|-|=+ -+|..+..++. .++...++|||...+||-+++| |
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCceeEEecCCCceeeEEecCCCCccccccc
Confidence 999999999999999999999999988 57999998875 2789999999999999988764 5
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
+|++|
T Consensus 304 ~vKiF 308 (313)
T KOG1407|consen 304 TVKIF 308 (313)
T ss_pred eeEEe
Confidence 67776
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=244.04 Aligned_cols=245 Identities=20% Similarity=0.328 Sum_probs=215.3
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1151 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll 1151 (1348)
++..+. .+|.++.| +|....++++-.+|.|.||+..+ +.++ +.+.-..-+|+. ..|-...+.++
T Consensus 8 k~~~rS---dRVKsVd~--HPtePw~la~LynG~V~IWnyet----qtmV---ksfeV~~~PvRa----~kfiaRknWiv 71 (794)
T KOG0276|consen 8 KFQSRS---DRVKSVDF--HPTEPWILAALYNGDVQIWNYET----QTMV---KSFEVSEVPVRA----AKFIARKNWIV 71 (794)
T ss_pred HhhccC---Cceeeeec--CCCCceEEEeeecCeeEEEeccc----ceee---eeeeecccchhh----heeeeccceEE
Confidence 344455 79999999 78999999999999999999854 5556 444445667777 56667788999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1152 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1152 ~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
+|++|..||||+.++.+ .+..+.+|.+. |.++ ..+|...++++++.|-.|++||....-.+.++ ++||...|.+
T Consensus 72 ~GsDD~~IrVfnynt~e-kV~~FeAH~Dy-IR~i-avHPt~P~vLtsSDDm~iKlW~we~~wa~~qt---feGH~HyVMq 145 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGE-KVKTFEAHSDY-IRSI-AVHPTLPYVLTSSDDMTIKLWDWENEWACEQT---FEGHEHYVMQ 145 (794)
T ss_pred EecCCceEEEEecccce-eeEEeeccccc-eeee-eecCCCCeEEecCCccEEEEeeccCceeeeeE---EcCcceEEEE
Confidence 99999999999999999 99999999887 9999 66788899999999999999999977655554 4578899999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEc-CCceEEEE
Q 000697 1232 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH--APIIASGSAKQLIKVFSL-EGEQLGTI 1308 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd--g~~LasgS~Dg~I~Vwd~-~g~~l~~i 1308 (1348)
++|+|. +.+.+++++-|++|++|.+... .+..++++|...|+|+++-+. .++|++|++|.+|+|||. +..++.++
T Consensus 146 v~fnPk-D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 146 VAFNPK-DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEecCC-CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999998 8999999999999999999988 899999999999999999875 469999999999999994 56788888
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+ |. ..|+.+.|||.-..+++||.||+|+||+
T Consensus 224 eG-Ht-------~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 224 EG-HT-------NNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hc-cc-------ccceEEEecCCCcEEEEecCCccEEEec
Confidence 88 66 7899999999999999999999999995
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=224.70 Aligned_cols=294 Identities=20% Similarity=0.340 Sum_probs=244.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec-
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD- 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl- 1111 (1348)
.|..+|..++-....+.+.+++.|.+-+||.+++|.++.++.+|. +.|.+++| ++.+.+++|++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikf--h~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT---GSVNSIKF--HNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc---cceeeEEe--ccccceEEEccCCcchHHHHHh
Confidence 456788888888888899999999999999999999999999999 99999999 678999999999999999983
Q ss_pred -----cCC---------------------------CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeE
Q 000697 1112 -----YDQ---------------------------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1112 -----~~~---------------------------~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~I 1159 (1348)
... .....+..+...+.+|...|.+ .+|-..+..+++++.|.+-
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a----~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA----CDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe----hhhhcCcceeeeeeccccc
Confidence 110 0011222334456677777766 7898889999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~ 1239 (1348)
.+||++++. .+..+.+|... .+.+ .-.|..+++++.+.|.+.++||.|..-..+. .++||...|+++.|..+
T Consensus 297 nlwDVEtge-~v~~LtGHd~E-LtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~---VFQGHtdtVTS~vF~~d-- 368 (481)
T KOG0300|consen 297 NLWDVETGE-VVNILTGHDSE-LTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA---VFQGHTDTVTSVVFNTD-- 368 (481)
T ss_pred eeeeeccCc-eeccccCcchh-cccc-ccCCcceEEEEeccCceeEeccchhhcceee---eecccccceeEEEEecC--
Confidence 999999999 99999988665 7776 5667889999999999999999995443344 55688899999999864
Q ss_pred CCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccc
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~ 1319 (1348)
..+++|+.|.+|++||+++.+.++.+++. ..+++.++++..+++||.--.+..|++||++|..+..+.. .. ..+|
T Consensus 369 -d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr-ts--RqgH 443 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR-TS--RQGH 443 (481)
T ss_pred -CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc-cc--cccc
Confidence 78999999999999999998889999984 5689999999999999999999999999999998887753 11 3356
Q ss_pred cCCeEEEEEeCCC--CEEEEEECCCeEEEcC
Q 000697 1320 IGSVNCLTFHPYQ--VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1320 ~~~Vtslafspdg--~~Latgs~Dg~I~IWd 1348 (1348)
..-|+|++|..+. .-|++++.|..+.-|+
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeE
Confidence 6789999997665 4578899999988874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=213.75 Aligned_cols=249 Identities=18% Similarity=0.308 Sum_probs=206.5
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
.++.+++|. +++..++| +|. |..|++||.|+.||||+... .....+.+.. -.+|+..|++ ++|+|.+
T Consensus 6 ~~~~~~gh~---~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vl--d~~hkrsVRs----vAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHK---DRVWSVAW--HPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVL--DDGHKRSVRS----VAWSPHG 73 (312)
T ss_pred eEEeecCCC---CcEEEEEe--ccCCceEEEeecCCceEEEEecCC-CCcEEEEEec--cccchheeee----eeecCCC
Confidence 456778888 79999999 565 78999999999999999864 2233333211 2478899998 9999999
Q ss_pred CeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
.+|++++.|.++.||.-..+. +++..+.+|.+. |.|+ .++.+|++|++++.|.+|-||.+..... ......+++|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-VK~V-aws~sG~~LATCSRDKSVWiWe~deddE-fec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENE-VKCV-AWSASGNYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccc-eeEE-EEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEEeeecccc
Confidence 999999999999999766432 388889998776 9999 7889999999999999999999986653 33333667888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
..|..+.|+|. ..+|+++|.|.+|++|+-.... .++.++.+|.+.|.+++|++.|..|++++.|++|+||...
T Consensus 151 qDVK~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~--- 225 (312)
T KOG0645|consen 151 QDVKHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY--- 225 (312)
T ss_pred ccccEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec---
Confidence 99999999998 8999999999999999876322 7899999999999999999999999999999999999732
Q ss_pred EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..+ .+.|...+..++|. ...||+++.|+.|++|
T Consensus 226 -~~~-------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 226 -TDL-------SGMHSRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred -cCc-------chhcccceEeeeec--ccceEeccCCCEEEEE
Confidence 111 12345789999998 6689999999999987
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=244.14 Aligned_cols=251 Identities=20% Similarity=0.329 Sum_probs=211.5
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1146 (1348)
Q Consensus 1067 ~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~ 1146 (1348)
.+.+.++.+|. ..|+++.|.+ ..+.+|++|+.|+.|+||+++. . ..++ +++.+|..+|+. ++|+++
T Consensus 204 kk~~~~~~gH~---kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~-~--~~~l---rtf~gH~k~Vrd----~~~s~~ 269 (503)
T KOG0282|consen 204 KKLSHNLSGHT---KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYD-D--RRCL---RTFKGHRKPVRD----ASFNNC 269 (503)
T ss_pred HhheeeccCCc---cccchhhhcc-ceeeEEEecCCCceEEEEEEec-C--ccee---hhhhcchhhhhh----hhcccc
Confidence 36678899999 9999999952 4889999999999999999987 2 2333 789999999999 899999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
+..++++|.|+.|++||+++++ ++..+.. +..++|+. +.|++ +.|++|+.||.|+.||+|+++ +++.+ ..|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~-~~~~f~~--~~~~~cvk-f~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeY---d~h 341 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQ-VLSRFHL--DKVPTCVK-FHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEY---DRH 341 (503)
T ss_pred CCeeeeeecceeeeeeccccce-EEEEEec--CCCceeee-cCCCCCcEEEEecCCCcEEEEeccchH-HHHHH---Hhh
Confidence 9999999999999999999999 8888876 44578884 55555 999999999999999999998 66544 356
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC---
Q 000697 1226 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--- 1301 (1348)
Q Consensus 1226 ~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~--- 1301 (1348)
-+.|..+.|-++ |+.+++.+.|+.++||+.+.. .+++.+ ..+...+.++..||+++++++=+.|+.|.+|.+.
T Consensus 342 Lg~i~~i~F~~~--g~rFissSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 342 LGAILDITFVDE--GRRFISSSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhheeeeEEccC--CceEeeeccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 699999999999 999999999999999999987 444433 3344578899999999999999999999999843
Q ss_pred -CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 -g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-.....+++ |. -.+.-..+.|||||.+|++|+.||.+.+||
T Consensus 419 r~nkkK~feG-h~-----vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 419 RLNKKKRFEG-HS-----VAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ccCHhhhhcc-ee-----ccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 233345666 54 235677899999999999999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=251.77 Aligned_cols=241 Identities=18% Similarity=0.310 Sum_probs=209.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+|.+++| +|....++++-..|.|++||..- ..++ ..+.+|.++|++ ++|+|+...+++||+|-.|+
T Consensus 10 sRvKglsF--HP~rPwILtslHsG~IQlWDYRM----~tli---~rFdeHdGpVRg----v~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 10 SRVKGLSF--HPKRPWILTSLHSGVIQLWDYRM----GTLI---DRFDEHDGPVRG----VDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ccccceec--CCCCCEEEEeecCceeeeehhhh----hhHH---hhhhccCCccce----eeecCCCCeEEecCCccEEE
Confidence 78999999 78999999999999999999854 2223 668899999999 99999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
||+..+.+ |+.++.+|-+. |..+ ++++.-.++++++.|.+|+||+..+++ ++.. .+||...|.|..|+|. .
T Consensus 77 VWnYk~rr-clftL~GHlDY-VRt~-~FHheyPWIlSASDDQTIrIWNwqsr~-~iav---ltGHnHYVMcAqFhpt--E 147 (1202)
T KOG0292|consen 77 VWNYKTRR-CLFTLLGHLDY-VRTV-FFHHEYPWILSASDDQTIRIWNWQSRK-CIAV---LTGHNHYVMCAQFHPT--E 147 (1202)
T ss_pred EEecccce-ehhhhccccce-eEEe-eccCCCceEEEccCCCeEEEEeccCCc-eEEE---EecCceEEEeeccCCc--c
Confidence 99999999 99999999887 9999 788888999999999999999999998 4543 4588899999999998 9
Q ss_pred CEEEEEECCCcEEEEEcCCCC----------------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1241 AKIVSASQAGDIQFLDIRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~----------------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
..++|+|-|.+|++||+...+ .....+.+|...|+-++|||.-+++++|++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 999999999999999986321 1234567899999999999999999999999
Q ss_pred CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1293 QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1293 g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.|++|..+....-.... ..+|.+.|+++-|||+..++++.|.|++|+|||
T Consensus 228 RqVKlWrmnetKaWEvDt-----crgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDT-----CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ceeeEEEeccccceeehh-----hhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 999999965443333222 123558999999999999999999999999997
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=231.27 Aligned_cols=245 Identities=19% Similarity=0.335 Sum_probs=212.9
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
|-..|...+.+++|+..|++|++++.|-.+.+||.++ -++++...+|. ..|.++.|. |.|.++++++.|.+|+.
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~---h~vS~V~f~--P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE---HGVSSVFFL--PLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc---cceeeEEEE--ecCCeeeecccccceeE
Confidence 3345667899999999999999999999999999986 46777788888 899999995 67899999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|++.+ +-. + +++.+|...|+. +..++||..+++++.|.+|++|-+.+.+ |...+..|.-. |-++++.
T Consensus 220 We~~t--g~c--v---~t~~~h~ewvr~----v~v~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~-vEci~wa 286 (406)
T KOG0295|consen 220 WECDT--GYC--V---KTFPGHSEWVRM----VRVNQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHP-VECIAWA 286 (406)
T ss_pred Eeccc--cee--E---EeccCchHhEEE----EEecCCeeEEEecCCCceEEEEEeccch-hhhhhhccccc-eEEEEec
Confidence 99976 322 2 568999998887 8888888888888999999999999998 88888877554 7887543
Q ss_pred cC--------------CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1189 QV--------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1189 s~--------------dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
+. .+.++.+|+.|++|++||+.++. ++. +..+|..+|..++|+|+ |++|+++..|+++++
T Consensus 287 p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~---tL~ghdnwVr~~af~p~--Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 287 PESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLF---TLVGHDNWVRGVAFSPG--GKYILSCADDKTLRV 360 (406)
T ss_pred ccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEE---EEecccceeeeeEEcCC--CeEEEEEecCCcEEE
Confidence 21 13599999999999999999997 443 33478899999999999 999999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
||+++. .+.+++..|..-+++++||.+..++++|+-|.++++|.
T Consensus 361 wdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 361 WDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999998 89999999999999999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=251.76 Aligned_cols=248 Identities=19% Similarity=0.420 Sum_probs=211.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~-~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|...|.+++|+|++.++++|+.|++|+|||. +.+..++++++|. ..|++++| +++++++++|+.|++|+|||
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~---~~v~~~~f--~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS---TYVTSVAF--SPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC---CceEEEEe--cCCCCEEEEecCCCcEEEEe
Confidence 346678999999999999999999999999999 5568999999999 89999999 78889999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee--eeeecCCCCC-CeEEEEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM--VNPIPSSSDC-SISALTA 1187 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~--v~~l~~~~~~-~VtsL~~ 1187 (1348)
+.+ ++.. +.+.+|...|.+ ++|++++..|++++.||.|++||+.++. . +..+..+... +++++ .
T Consensus 275 ~~~--~~~~-----~~l~~hs~~is~----~~f~~d~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~-~ 341 (456)
T KOG0266|consen 275 VRT--GECV-----RKLKGHSDGISG----LAFSPDGNLLVSASYDGTIRVWDLETGS-KLCLKLLSGAENSAPVTSV-Q 341 (456)
T ss_pred ccC--CeEE-----EeeeccCCceEE----EEECCCCCEEEEcCCCccEEEEECCCCc-eeeeecccCCCCCCceeEE-E
Confidence 976 3333 568999999998 8999999999999999999999999988 4 3566655554 68888 7
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~ 1267 (1348)
+++++.++++++.|+.+++||++... ....+..+..-...+.+...++. +.++++|+.|+.|.+||+.++ ..+..+
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~i~sg~~d~~v~~~~~~s~-~~~~~l 417 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTG--GKLIYSGSEDGSVYVWDSSSG-GILQRL 417 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCC--CCeEEEEeCCceEEEEeCCcc-chhhhh
Confidence 88999999999999999999999887 44444333211113444455666 999999999999999999986 788899
Q ss_pred ecC-CCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcC
Q 000697 1268 DAH-RGSLSALAVHRHAPIIASGS--AKQLIKVFSLE 1301 (1348)
Q Consensus 1268 ~~h-~~~VtsLa~spdg~~LasgS--~Dg~I~Vwd~~ 1301 (1348)
.+| ...+..+.+|+...++++++ .|+.+++|..+
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=251.33 Aligned_cols=297 Identities=18% Similarity=0.257 Sum_probs=240.1
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCC------------CcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEE------------DTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs--~dg~I~VWd~~t------------~~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|...++..|.++..||||..++||+ .||.++||+.+. .+.+.+...|. +.|+|+.| ++|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---~sv~CVR~--S~d 80 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---GSVNCVRF--SPD 80 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---CceeEEEE--CCC
Confidence 348888888899999999999999999 899999998652 13455667787 89999999 899
Q ss_pred CCEEEEEeCCCeEEEEeccC--------CCCceeEEe---eeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE
Q 000697 1094 VSLLLVASCNGNIRIWKDYD--------QKDKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~--------~~~~~~lvs---~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW 1162 (1348)
|.+|++||+|+.|.||+... ..+....++ +...+.+|...|.. ++|+|++.++++++.|++|.||
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D----v~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD----VNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce----eccCCCccEEEEecccceEEEE
Confidence 99999999999999999862 112222222 33567899999998 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC---CCCCCeEEEEEecCCC
Q 000697 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---QQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1163 Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~---~h~~~I~sl~~sp~~~ 1239 (1348)
|..+.+ ++..+.+|..- |..+ .++|-|++|++-+.|++|++|+...-. +.+.+...- .-...+..+.|+|+
T Consensus 157 n~~tF~-~~~vl~~H~s~-VKGv-s~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD-- 230 (942)
T KOG0973|consen 157 NAKTFE-LLKVLRGHQSL-VKGV-SWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD-- 230 (942)
T ss_pred ccccce-eeeeeeccccc-ccce-EECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC--
Confidence 999998 99999999886 9999 778999999999999999999977644 333332221 22356889999999
Q ss_pred CCEEEEEEC----CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----CC------------EEEEEeCCCcEEEE
Q 000697 1240 PAKIVSASQ----AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----AP------------IIASGSAKQLIKVF 1298 (1348)
Q Consensus 1240 g~~LaSgs~----DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----g~------------~LasgS~Dg~I~Vw 1298 (1348)
|.+|++... -..+.|.+-.+. +.-..+-+|.+++.++.|+|. .. ++|+||.|++|.||
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 999998753 235888887766 677889999999999999982 11 78999999999999
Q ss_pred Ec-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1299 SL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1299 d~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .-+++..+.. -| ...|.+++|+|||..|.++|.||+|.+.
T Consensus 310 ~T~~~RPl~vi~~---lf----~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 310 NTALPRPLFVIHN---LF----NKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ecCCCCchhhhhh---hh----cCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 94 3444444322 11 3689999999999999999999999874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=223.42 Aligned_cols=240 Identities=21% Similarity=0.398 Sum_probs=204.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...+..+.|++++++|++++.+|.|++||+.+++.+..+..|. ..|.++.| .+++.++++++.||.|++||+..
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAF--SPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC---CcEEEEEE--cCCCCEEEEecCCCeEEEEECCC
Confidence 34667899999999999999999999999999888888888888 78999999 56788888888899999999964
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
++ .. ..+..|...+.+ ++|++++..+++++.+|.|++||+++.+ .+..+..+... |.++ .+.++++
T Consensus 125 --~~--~~---~~~~~~~~~i~~----~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~ 190 (289)
T cd00200 125 --GK--CL---TTLRGHTDWVNS----VAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGE-VNSV-AFSPDGE 190 (289)
T ss_pred --cE--EE---EEeccCCCcEEE----EEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccc-cceE-EECCCcC
Confidence 22 22 234567777777 8999987777777779999999999888 77788766554 9999 6778888
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.+++++.||.|++||++..+ ....+ ..|...+.++.|+++ +.++++++.||.|++||+.++ .....+..|...
T Consensus 191 ~l~~~~~~~~i~i~d~~~~~-~~~~~---~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~ 263 (289)
T cd00200 191 KLLSSSSDGTIKLWDLSTGK-CLGTL---RGHENGVNSVAFSPD--GYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNS 263 (289)
T ss_pred EEEEecCCCcEEEEECCCCc-eecch---hhcCCceEEEEEcCC--CcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCc
Confidence 99999999999999999866 34333 355679999999998 899999998999999999987 788888899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.+++|++++.++++++.||.|++|+
T Consensus 264 i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 264 VTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=250.35 Aligned_cols=291 Identities=13% Similarity=0.220 Sum_probs=208.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC-------CCCCeEEEEEEe-eC--CCCEEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-------PDKGISKLCLVN-EL--DVSLLLVAS 1101 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~-------~~~~ItsL~f~n-s~--d~~~L~tgs 1101 (1348)
..|.+.|.++.|++||+|||+|+.||.|+||.+...+....-.+... ..+.+..+.-.. .. .....-.+.
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 37889999999999999999999999999999875333111000000 000011111100 00 011111222
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
....+ +..... -.-...++..+.||.+.|.. +.|+ .+++|++++.|++||+|++.+.+ |+..|. |.+.
T Consensus 344 ~s~~~-~~p~~~---f~f~ekP~~ef~GHt~DILD----lSWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL~~F~-Hndf- 411 (712)
T KOG0283|consen 344 QSPCV-LLPLKA---FVFSEKPFCEFKGHTADILD----LSWS-KNNFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDF- 411 (712)
T ss_pred CCccc-cCCCcc---ccccccchhhhhccchhhee----cccc-cCCeeEeccccccEEeecCCCcc-eeeEEe-cCCe-
Confidence 22221 112111 01112345678999999988 8998 46899999999999999999999 998886 5565
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
|||+++.+.|.++|++|+-||.||||++...+ + ..+.... .-|++++|.|+ |+..+.|+.+|.+++|++...
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-V-v~W~Dl~---~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~l- 483 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-V-VDWNDLR---DLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGL- 483 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCe-e-Eeehhhh---hhheeEEeccC--CceEEEEEeccEEEEEEccCC-
Confidence 99999999999999999999999999998776 3 3333332 78999999999 999999999999999999976
Q ss_pred cceEEEecC--------CCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1262 DAYLTIDAH--------RGSLSALAVHRHAP-IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1262 ~~v~t~~~h--------~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+....+..+ ...|+++.|.|... .+++.+.|..|+|||. +.+.+..+++ +. ..+.-....|+.|
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-~~-----n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-FR-----NTSSQISASFSSD 557 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-cc-----cCCcceeeeEccC
Confidence 454444321 22799999998654 4666789999999995 4566777777 33 1244466789999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000697 1332 QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 g~~Latgs~Dg~I~IWd 1348 (1348)
|++|++++.|..|+||+
T Consensus 558 gk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWK 574 (712)
T ss_pred CCEEEEeecCceEEEEe
Confidence 99999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=226.27 Aligned_cols=280 Identities=17% Similarity=0.299 Sum_probs=237.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
.+|+++...+..+.+++|+.|.++.++|..+++.+..+++|. ..|+++.| +++...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc---eEEEEEEe--ccchhheeecCCcceEEeecccccc
Confidence 578899998888899999999999999999999999999999 89999999 7899999999999999999986632
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCCCE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg~~ 1194 (1348)
. . .....|..+|+. +..++.+.+++++++||...+.|++++. ++..... ..+..+++. .++|||.+
T Consensus 295 ~--~-----~~~~~h~~~V~~----ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~-~fHpDgLi 361 (506)
T KOG0289|consen 295 E--P-----TSSRPHEEPVTG----LSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSA-AFHPDGLI 361 (506)
T ss_pred C--c-----ccccccccccee----eeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEe-eEcCCceE
Confidence 1 1 235678899988 7888999999999999999999999998 6655554 244457888 78899999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCC
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGS 1273 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~ 1273 (1348)
|.+|..||.|++||+.++. .+. .+.+|.++|..++|+.+ |.+|++++.|+.|++||+|.. +.+.++... ...
T Consensus 362 fgtgt~d~~vkiwdlks~~-~~a---~Fpght~~vk~i~FsEN--GY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQT-NVA---KFPGHTGPVKAISFSEN--GYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKE 434 (506)
T ss_pred EeccCCCceEEEEEcCCcc-ccc---cCCCCCCceeEEEeccC--ceEEEEEecCCeEEEEEehhh-cccceeecccccc
Confidence 9999999999999999887 343 45578899999999998 999999999999999999987 566666643 337
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCC---ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g---~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.++.|...|.+|+.++.|=.|++++... ..+..+.. |.+..+++.|..+.++++++|.|..+++|.
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~--------~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD--------HSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh--------cccccceeeecccceEEeeccchhheEEee
Confidence 99999999999999998886777776333 33333433 447889999999999999999999999873
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=226.05 Aligned_cols=261 Identities=20% Similarity=0.380 Sum_probs=214.2
Q ss_pred ccCCcccccccC---------CCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCcE----EEEeeCCCCCCCCeEE
Q 000697 1022 KLNNPIACWDTR---------FEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDTL----LNSFDNHDFPDKGISK 1085 (1348)
Q Consensus 1022 kl~~~i~~Wd~~---------~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~~~----l~~~~~h~~~~~~Its 1085 (1348)
...+...+|+.+ |.++|.+++|.-... .+++|+.|.++++|.++.++. +..-++|. ..|.+
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk---~~V~s 198 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK---RSVDS 198 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc---cceeE
Confidence 344556777766 457888888754333 699999999999999987643 33345898 89999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEeccCCC------------------CceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1086 LCLVNELDVSLLLVASCNGNIRIWKDYDQK------------------DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1086 L~f~ns~d~~~L~tgs~DG~IrIWdl~~~~------------------~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
+.. ..++..+++|+.|.+|+||+..... +.....++...+.+|..+|.+ +.|++ .
T Consensus 199 Vsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~----V~w~d-~ 271 (423)
T KOG0313|consen 199 VSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS----VVWSD-A 271 (423)
T ss_pred EEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee----EEEcC-C
Confidence 998 6899999999999999999932210 001111234567899999988 88986 8
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
..+++++.|.+|++||+.++. ++.++.+.. .++|+ ...+..++|++|+.|..+++||.|++...+... .+.+|++
T Consensus 272 ~v~yS~SwDHTIk~WDletg~-~~~~~~~~k--sl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-s~~gH~n 346 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGG-LKSTLTTNK--SLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-SLIGHKN 346 (423)
T ss_pred CceEeecccceEEEEEeeccc-ceeeeecCc--ceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEE-eeecchh
Confidence 899999999999999999999 888887743 38898 566789999999999999999999876444333 6679999
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+|.++.|+|. +...|++|+.||++++||+|....++..+.+|.+.|.++.|. .+..+++|+.|++|+|+.
T Consensus 347 wVssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 347 WVSSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred hhhheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 9999999998 788999999999999999999866999999999999999998 567999999999999986
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=233.45 Aligned_cols=295 Identities=16% Similarity=0.260 Sum_probs=223.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCC-CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~-~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
+...|.++++.|.|..|++|+.|.+|+.||+..- .....|+.-.+ ....|.++.| ++.++.|++.+.....+|+|-
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCeEEEEecCcceeEEcc
Confidence 3456899999999999999999999999999742 22222332221 1246999999 789999999998899999986
Q ss_pred cCCCCceeE------EeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecC----CCCC
Q 000697 1112 YDQKDKQKL------VTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS----SSDC 1180 (1348)
Q Consensus 1112 ~~~~~~~~l------vs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----~~~~ 1180 (1348)
... ...+. +.....-.||...+++ .+|+|... .+++++.||++|+||+...+.....++. ...-
T Consensus 244 dG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~----g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 244 DGF-EIVEFSKGDQYIRDMYNTKGHIAELTC----GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred CCc-eeeeeeccchhhhhhhccCCceeeeec----cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 321 11111 1112334678888887 89999865 5777789999999999876523444432 2233
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
+++++ .|+++|..|++|+.||+|.+||.+... ....+.....|.. .|+||.|+++ |++|++-+.|+++++||+|
T Consensus 319 ~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~d--g~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYD--GNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred Cceee-ecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccc--cchhhhccCCCceeeeecc
Confidence 46666 788999999999999999999987543 1111212234555 8999999999 9999999999999999999
Q ss_pred CCCcceEEEecCC--CCeEEEEEeCCCCEEEEEeC------CCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1259 NHKDAYLTIDAHR--GSLSALAVHRHAPIIASGSA------KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~--~~VtsLa~spdg~~LasgS~------Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
..++++.+..+-. -.-+.++|+|+.++|++|+. .|.+.+|| .+-+.+..+.. .. ..|..+.||
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~-------aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-ST-------ASVVRCLWH 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CC-------ceEEEEeec
Confidence 9888888777543 35678999999999999864 46799999 66677777766 33 789999999
Q ss_pred CCCCEEEEEECCCeEEEc
Q 000697 1330 PYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IW 1347 (1348)
|.-+.+.+|+.||.++||
T Consensus 467 pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred chhhheeeecCCCceEEE
Confidence 999999999999999986
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=214.00 Aligned_cols=270 Identities=18% Similarity=0.335 Sum_probs=216.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
-...|++|.|+|.+..|++++.||++++||.........++. . .++.+++| .+...+++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~---~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-G---APLLDCAF---ADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-C---Cceeeeec---cCCceEEEeccCceEEEEEecC
Confidence 347899999999999999999999999999997766555553 3 58999999 3578899999999999999977
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+.... +..|...+++ +.+.+..+.+++||.|++|++||.+... ++..+.... .|.++ +..++
T Consensus 85 --~~~~~------igth~~~i~c----i~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~~k--kVy~~---~v~g~ 146 (323)
T KOG1036|consen 85 --GNEDQ------IGTHDEGIRC----IEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQGK--KVYCM---DVSGN 146 (323)
T ss_pred --Cccee------eccCCCceEE----EEeeccCCeEEEcccCccEEEEeccccc-cccccccCc--eEEEE---eccCC
Confidence 33222 4678899988 8888889999999999999999999766 565555433 48887 34688
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cceEEEecC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAH 1270 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~v~t~~~h 1270 (1348)
.|+.|+.|..|.+||+|+.....+.. ...-+-.++++++-|. +.-++++|.||.|.+=.+.... .....|+.|
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r--eS~lkyqtR~v~~~pn--~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR--ESSLKYQTRCVALVPN--GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc--cccceeEEEEEEEecC--CCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999999999999876443221 1122467899999998 7788899999998776655431 344567777
Q ss_pred CC---------CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1271 RG---------SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1271 ~~---------~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.. +|++++|||-...||||+.||.|.+|| ...+.+..+.. .+ ..|.+++|+.+|..||++++
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~-------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-YE-------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-CC-------CceEEEEeccCCCeEEEEec
Confidence 42 799999999989999999999999999 45666766655 33 67999999999999999975
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=244.24 Aligned_cols=271 Identities=21% Similarity=0.363 Sum_probs=227.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~-~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+.+..|+ +.++++++.+.+|++||..++..+.. +.+|. +.|.++++ ...+.+|++|+.|.+++|||..+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC---CCceeEEE--ecCCCEEEEEecCCcEEeEecCC
Confidence 4567888888 67899999999999999999998888 99999 99999999 34689999999999999999765
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+... ..+.+|...+.+ +.. ....++.|+.|.+|++||+.++. ++..+.+|.+. |.++. . ++.
T Consensus 281 --g~C~-----~~l~gh~stv~~----~~~--~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~-V~~v~-~--~~~ 342 (537)
T KOG0274|consen 281 --GECT-----HSLQGHTSSVRC----LTI--DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGP-VNCVQ-L--DEP 342 (537)
T ss_pred --CcEE-----EEecCCCceEEE----EEc--cCceEeeccCCceEEEEeccCcc-eEEEecccccc-EEEEE-e--cCC
Confidence 5554 447899988876 332 35567777899999999999999 99999986554 99993 3 489
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++++|+.||+|++||.++.+ +++ .+.+|..+|.++.+.. ...+++|+.|++|++||+++..+++.++.+|...
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~-cl~---sl~gH~~~V~sl~~~~---~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGK-CLK---SLSGHTGRVYSLIVDS---ENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred EEEEEecCceEEEEEhhhce-eee---eecCCcceEEEEEecC---cceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 99999999999999999877 555 4457889999997753 1799999999999999999865699999999988
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+.+ .+.+|++++.|++|++|| .+++.+..+.. + +.+.|+.+++. ...+++++.||.+++||
T Consensus 416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-~------~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-R------HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccccc--ccceeEeccccccEEEeecccCceeeeecc-C------CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 866655 568999999999999999 67888888877 2 33678888776 46788888999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=235.19 Aligned_cols=271 Identities=19% Similarity=0.243 Sum_probs=198.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-------------EEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------NSFDNHDFPDKGISKLCLVNEL-DVSLLLVASC 1102 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-------------~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~ 1102 (1348)
.|.....++++..+++++.+.....|+...+..+ ..+.+|. +.|++++| ++ ++.+|++|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~---~~V~~v~f--sP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE---GPIIDVAF--NPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC---CCEEEEEE--cCCCCCEEEEEeC
Confidence 3455556667666666666666666765433222 1366777 89999999 56 7889999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
||+|++||+...............+.+|...|.+ ++|+|++ ..|++++.|+.|+|||+++++ .+..+..|.+.
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~----l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~- 170 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI----VSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQ- 170 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEE----EEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCc-
Confidence 9999999996521111111223457889988887 9999986 578888999999999999998 88888888765
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC-eEEEEEecCCCCCEEEEEE----CCCcEEEEE
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER-VVGISFQPGLDPAKIVSAS----QAGDIQFLD 1256 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~-I~sl~~sp~~~g~~LaSgs----~DG~I~IWD 1256 (1348)
|.++ .+++++++|++|+.||.|++||+++++ .+..+. +|.+. +..+.|.++ +..+++++ .|+.|++||
T Consensus 171 V~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~---~H~~~~~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 171 ITSL-EWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVE---AHASAKSQRCLWAKR--KDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred eEEE-EEECCCCEEEEecCCCEEEEEECCCCc-EEEEEe---cCCCCcceEEEEcCC--CCeEEEEecCCCCCCeEEEEe
Confidence 9999 667899999999999999999999987 444443 34443 456778887 56666543 478999999
Q ss_pred cCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1257 IRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGS-AKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
+++...++.....+. ..+....|++++.+|++|+ .|+.|++||+. ++.+..... . ...++.+++|.|..
T Consensus 244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~------s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-S------SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-c------CCCCCcceEecccc
Confidence 998756666555443 4566677899999988887 59999999954 555544443 1 23466777777754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=216.59 Aligned_cols=244 Identities=20% Similarity=0.293 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFS-PIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
..+...++|++.. +.+++++.||++++||... .+.+..|+.|. ..|.++.|. ..++..++++|.||+|++|+..
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~---~EV~Svdwn-~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK---REVYSVDWN-TVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh---hheEEeccc-cccceeEEeeccCCceEeecCC
Confidence 3689999999865 4888899999999999653 46788899999 899999993 5677889999999999999985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
. +.-+ +++.+|...|.. ..|+|....+++ ++.||.+++||++... ....+..|.. .|.|+.+..-+
T Consensus 136 r----~~Sv---~Tf~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~-Eil~cdw~ky~ 202 (311)
T KOG0277|consen 136 R----PNSV---QTFNGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNS-EILCCDWSKYN 202 (311)
T ss_pred C----Ccce---EeecCCccEEEE----EecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccc-eeEeecccccC
Confidence 5 2222 558899988888 899988665555 5899999999998765 4555888874 49999787788
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
.+++++|+.|+.||.||+|+-+..+.. ..+|.-.|+.+.|+|. ....|++++.|-+++|||...+...+.+...|.
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~e---L~gh~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFE---LNGHGLAVRKVKFSPH-HASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CcEEEecCCCceEEEEehhhcccccee---ecCCceEEEEEecCcc-hhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 899999999999999999987755443 3578899999999998 788999999999999999987767888888899
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.-+..++|++. ..++|+++.|+.++||+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 99999999986 45999999999999998
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=234.55 Aligned_cols=256 Identities=17% Similarity=0.246 Sum_probs=192.3
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeEEEEeccCCCCce-eEEeeeecccCC
Q 000697 1053 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQGH 1130 (1348)
Q Consensus 1053 gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~-~lvs~~~~l~~h 1130 (1348)
|+.++.|++|+......+..+.+|. +.|.+++| +++ +.+|++|+.||+|+|||+....... ........+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~---~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT---SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC---CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5568899999988888888999999 89999999 565 7899999999999999996521111 111122346788
Q ss_pred CCcccccceEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 000697 1131 KPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1348)
Q Consensus 1131 ~~~V~si~~~v~ws~~~~~L-l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDl 1209 (1348)
...|.+ ++|+|++..+ ++++.||+|++||+++++ .+..+. +. ..|.++ .++++|.+|++++.|+.|++||+
T Consensus 125 ~~~V~s----Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~-~~V~Sl-swspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISI----IDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MP-KKLSSL-KWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEE----EEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cC-CcEEEE-EECCCCCEEEEEecCCEEEEEEC
Confidence 888887 9999998776 567899999999999988 776665 33 349999 67889999999999999999999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEE-----EEecCCCCCEEEEEECCC----cEEEEEcCCCCcceEEEec--CCCCeEEEE
Q 000697 1210 RTPDMLVCSTRPHTQQVERVVGI-----SFQPGLDPAKIVSASQAG----DIQFLDIRNHKDAYLTIDA--HRGSLSALA 1278 (1348)
Q Consensus 1210 r~~~~~v~~~~~~~~h~~~I~sl-----~~sp~~~g~~LaSgs~DG----~I~IWDlr~~~~~v~t~~~--h~~~VtsLa 1278 (1348)
++++ .+..+. +|.+.+.+. .|+++ +.+|++++.|+ .|+|||++....++..+.. +.+.+....
T Consensus 197 Rsg~-~i~tl~---gH~g~~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 197 RKQE-IASSFH---IHDGGKNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred CCCc-EEEEEe---cccCCceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 9987 444443 455544332 34466 78888887764 7999999975567766543 334444444
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1279 VHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1279 ~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
..++|.++++|+.|+.|++|++....+..+.. +. +..++.+++|.|...
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-----s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-----SCSPFRSFGFLPKQI 319 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-----cCCCccceEEccccc
Confidence 45668899999999999999976555554443 22 347788899999763
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=231.25 Aligned_cols=273 Identities=17% Similarity=0.267 Sum_probs=222.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
..-+.|+ ..+.|++|. ...|.+|+..+++.......+. ..|+++.| +++|.+|++|..+|.|.|||....+.
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~---~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~- 251 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGE---ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKK- 251 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCC---CceEEEEE--CCCCCEEEEeecCCeEEEEehhhccc-
Confidence 4456677 455777776 5689999999998776666655 79999999 78999999999999999999865222
Q ss_pred eeEEeeeecccC-CCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeEEEEEecCCCCEE
Q 000697 1118 QKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1118 ~~lvs~~~~l~~-h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
+ +.+.+ |...|-+ ++|+ +..+.+|+.||.|..+|++..+ .... +.+|... |..+ .+.++++++
T Consensus 252 ---~---~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~-~~~~~~~~H~qe-VCgL-kws~d~~~l 316 (484)
T KOG0305|consen 252 ---T---RTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQ-HVVSTLQGHRQE-VCGL-KWSPDGNQL 316 (484)
T ss_pred ---c---ccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecch-hhhhhhhcccce-eeee-EECCCCCee
Confidence 2 34556 7777776 8997 6778888899999999999887 4444 6666555 9999 678999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++|+.|+.+.|||........+ ..+|...|..++|+|. ....||+|+ .|+.|++||..++ ..+..+.. ...
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~----~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt-gsQ 389 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFT----FTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT-GSQ 389 (484)
T ss_pred ccCCCccceEeccCCCccccEE----EeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCC-cEeccccc-CCc
Confidence 9999999999999976664443 2367799999999998 788899875 6899999999987 67776663 567
Q ss_pred eEEEEEeCCCCEEEEE--eCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASG--SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~Lasg--S~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|.+|.|++..+-|+++ ..+..|.||+. +-+.+..+.+ |. ..|..++++|||..+++|+.|.++++|+
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~-------~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HT-------SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-Cc-------ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 9999999998766554 55678999994 5566677777 65 8899999999999999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=212.23 Aligned_cols=241 Identities=16% Similarity=0.285 Sum_probs=197.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|+..|+++.|+.+|.+||||+-+|.|+||+..++.....+...- ..|.-+.| +|.+..|+.|+.||.|-+|.+..
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~---~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV---EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc---CceEEEEe--cccccEEEeecCCCcEEEEECCC
Confidence 45789999999999999999999999999999998888776333 56778888 78999999999999999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC----------------
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---------------- 1177 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~---------------- 1177 (1348)
+ ... +.+.+|..++++ =.|.|+|+.++++..||+|++||..+++ ++..+...
T Consensus 180 --~--~~~---kv~~Gh~~~ct~----G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 180 --Q--ALC---KVMSGHNSPCTC----GEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGST 247 (399)
T ss_pred --c--cee---eEecCCCCCccc----ccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccce
Confidence 2 122 457899999888 6788999999999999999999999988 66655410
Q ss_pred -----CCC----------CeEEE-------------------E--EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC
Q 000697 1178 -----SDC----------SISAL-------------------T--ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1348)
Q Consensus 1178 -----~~~----------~VtsL-------------------~--~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~ 1221 (1348)
.+. .|..+ . .++..-.+.++|+.||+|.|||+...+ .....
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c-- 324 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHIC-- 324 (399)
T ss_pred eEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheec--
Confidence 000 01111 0 011112467889999999999998776 33332
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1222 ~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|...|+.+.|-+. .+|++++.||.|+.||.|++ .++.++.+|...|.+++++|++++++++|.|++.+||+.
T Consensus 325 --~he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 325 --EHEDGVTKLKWLNT---DYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred --cCCCceEEEEEcCc---chheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 46688999999863 78999999999999999998 899999999999999999999999999999999999975
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=207.66 Aligned_cols=270 Identities=14% Similarity=0.288 Sum_probs=211.3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1034 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1034 ~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t-~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
-...|.+|+||| ...++++|+.||+||+|+++. |..+ +....|. ++|.+++| +.||..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~W--sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCW--SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEE--ccCCceEEeeccCCceEEEE
Confidence 347899999999 555777999999999999986 3333 2344566 89999999 78999999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
+.. ++.. .+..|..+|+. +.|-+... .|++|+.|++|+.||.+... ++.++.... .+.++.
T Consensus 101 L~S--~Q~~------~v~~Hd~pvkt----~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPe--RvYa~D-- 163 (347)
T KOG0647|consen 101 LAS--GQVS------QVAAHDAPVKT----CHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPE--RVYAAD-- 163 (347)
T ss_pred ccC--CCee------eeeecccceeE----EEEecCCCcceeEecccccceeecccCCCC-eeeeeeccc--eeeehh--
Confidence 977 4332 35779999998 78866555 68999999999999999988 888776532 267662
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTI 1267 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~ 1267 (1348)
....+++.+..+..|.+|+++.+....+..+.. -+-.++||+..++ ....+.|+.+|.+.|..+..+. +.-.+|
T Consensus 164 -v~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d--~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 164 -VLYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQD--KDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred -ccCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEec--CCceEeeeecceEEEEecCCCCccCceeE
Confidence 345689999999999999998776444433221 2356889999988 6677999999999999988641 334466
Q ss_pred ecCCC---------CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEE
Q 000697 1268 DAHRG---------SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1268 ~~h~~---------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Lat 1337 (1348)
+.|+. .|++++|||.-..|++.+.||++.+||.+ ...+.+.+. |. .+|++.+|+.+|.++|-
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~~-------qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-HP-------QPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-CC-------CccceeEecCCCCEEEE
Confidence 77752 57889999998899999999999999954 344444444 43 89999999999998875
Q ss_pred E
Q 000697 1338 G 1338 (1348)
Q Consensus 1338 g 1338 (1348)
+
T Consensus 311 A 311 (347)
T KOG0647|consen 311 A 311 (347)
T ss_pred E
Confidence 5
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=210.62 Aligned_cols=286 Identities=14% Similarity=0.236 Sum_probs=224.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------------C------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------D------TLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t------------~------~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|..++.+.+|++||.++|+|+.|..|+|.|++. | -.++++-.|. ..|+++.| +|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~---devn~l~F--HPr 183 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV---DEVNDLDF--HPR 183 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc---Ccccceee--cch
Confidence 55778999999999999999999999999999871 1 2466777788 89999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
...|++|+.|++|+++|... .....+++.++ ....|++ +.|+|.|.++++|.+-.++++||+++.+ |...
T Consensus 184 e~ILiS~srD~tvKlFDfsK----~saKrA~K~~q-d~~~vrs----iSfHPsGefllvgTdHp~~rlYdv~T~Q-cfvs 253 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSK----TSAKRAFKVFQ-DTEPVRS----ISFHPSGEFLLVGTDHPTLRLYDVNTYQ-CFVS 253 (430)
T ss_pred hheEEeccCCCeEEEEeccc----HHHHHHHHHhh-ccceeee----EeecCCCceEEEecCCCceeEEecccee-Eeee
Confidence 99999999999999999854 22222333343 2345666 8999999999999999999999999988 6544
Q ss_pred ec---CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1174 IP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1174 l~---~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
-. .|.+ .|+++ -+++.+++.++|+.||.|++||--+++ ++.++. .|. ...|.+..|..+ |+++++.+.|
T Consensus 254 anPd~qht~-ai~~V-~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~--gsevcSa~Ftkn--~kyiLsSG~D 326 (430)
T KOG0640|consen 254 ANPDDQHTG-AITQV-RYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHG--GSEVCSAVFTKN--GKYILSSGKD 326 (430)
T ss_pred cCccccccc-ceeEE-EecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcC--CceeeeEEEccC--CeEEeecCCc
Confidence 32 3444 49999 678899999999999999999998887 454442 232 467999999998 9999999999
Q ss_pred CcEEEEEcCCCCcceEEEecCC-----CCeEEEEEeCCCCEEEEEe-CCCcEEEEEc-CCceEEEEeccCCcccccccCC
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGS-AKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGS 1322 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h~-----~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~ 1322 (1348)
..|++|.+.++ .++..+.+-. ..-+...|+....+++.-. ..+.+.-||. ++..+..+.. +|.+.
T Consensus 327 S~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-------gHn~a 398 (430)
T KOG0640|consen 327 STVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-------GHNGA 398 (430)
T ss_pred ceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-------CCCCC
Confidence 99999999998 7888777531 1223445665566665543 3466888994 4444433332 35589
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1323 VNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1323 Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
+..+.-+|.+..++||+.|..+++|
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeee
Confidence 9999999999999999999999999
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=229.11 Aligned_cols=241 Identities=17% Similarity=0.294 Sum_probs=210.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~-h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|+++.|+++|.+|++|..+|.|.|||.++.+.+..+.+ |. ..|.+++| ++..+.+|+.||.|..+|+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~---~rvg~laW----~~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA---SRVGSLAW----NSSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC---ceeEEEec----cCceEEEecCCCcEEEEEEec
Confidence 46899999999999999999999999999999999999998 77 89999999 478999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.+. .+ ..+.+|...|.. +.|++++.++++||.|+.+.|||..... +...+..|... |.+++|++....
T Consensus 290 ~~~---~~---~~~~~H~qeVCg----Lkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aA-VKA~awcP~q~~ 357 (484)
T KOG0305|consen 290 SQH---VV---STLQGHRQEVCG----LKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAA-VKALAWCPWQSG 357 (484)
T ss_pred chh---hh---hhhhcccceeee----eEECCCCCeeccCCCccceEeccCCCcc-ccEEEecccee-eeEeeeCCCccC
Confidence 222 11 237889999988 9999999999999999999999998777 88888888776 999988888889
Q ss_pred EEEEEe--CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCcceEEEec
Q 000697 1194 QLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1194 ~LvsGs--~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
+|++|+ .|+.|++||..++.. +....+ .+.|.++.|++. .+.|+++. .++.|.||+..+. +.+..+.+
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~-i~~vdt----gsQVcsL~Wsk~--~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g 429 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGAR-IDSVDT----GSQVCSLIWSKK--YKELLSTHGYSENQITLWKYPSM-KLVAELLG 429 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcE-eccccc----CCceeeEEEcCC--CCEEEEecCCCCCcEEEEecccc-ceeeeecC
Confidence 999875 599999999999884 443322 378999999999 77777654 5678999999987 79999999
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1270 h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|...|..++++|+|..+++|+.|.++++|++-+
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999999999999999999999999999999544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-22 Score=218.63 Aligned_cols=246 Identities=15% Similarity=0.221 Sum_probs=200.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|..+|.-+.||||+++|++++.+..+.+||..+|.....+.... +..+.+.+| -|||..+++|+.|+.|..||..
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--GFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc--CCCcceeEE--ccCCceeEecCCCCcEEEecCC
Confidence 466899999999999999999999999999999999988876552 268899999 5899999999999999999985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ....+|+... ...|.+ ++..+||.++++.+.|..|++++.++.. .+..+..+ .+|+++ ..+.++
T Consensus 343 g-----n~~~~W~gvr--~~~v~d----lait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise~--~~its~-~iS~d~ 407 (519)
T KOG0293|consen 343 G-----NILGNWEGVR--DPKVHD----LAITYDGKYVLLVTVDKKIRLYNREARV-DRGLISEE--QPITSF-SISKDG 407 (519)
T ss_pred c-----chhhcccccc--cceeEE----EEEcCCCcEEEEEecccceeeechhhhh-hhcccccc--CceeEE-EEcCCC
Confidence 4 2233444333 245566 7888999999999999999999998876 55555543 349999 788999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+++++.-.+..|++||+.... .++.+.+++. ...|..-+|--. +..++++||+|+.|+||+.+++ +++.++.+|..
T Consensus 408 k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq-~~fiIrSCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~ 483 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENK-LVRKYFGHKQ-GHFIIRSCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK 483 (519)
T ss_pred cEEEEEcccCeeEEeecchhh-HHHHhhcccc-cceEEEeccCCC-CcceEEecCCCceEEEEEccCC-ceeEeecCCcc
Confidence 999999999999999999665 5555544432 223444455433 4579999999999999999998 89999999999
Q ss_pred CeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|+|++|+|..+ ++|++|.||+|+||...
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999765 89999999999999753
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=220.88 Aligned_cols=256 Identities=18% Similarity=0.326 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE----------EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL----------LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~----------l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
.|.+.|+.+..-|..+ ++|+++..+.|.|||+.+..- -.++.+|. +.-.+|.|. ......|++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~---~eg~glsWn-~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE---KEGYGLSWN-RQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec---ccccccccc-cccceeEeecc
Confidence 4567899999988776 677788899999999875311 12677888 456778994 45677999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECC--CCceeeeeecCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLE--KEQQMVNPIPSSS 1178 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~--t~~~~v~~l~~~~ 1178 (1348)
.|+.|++||+.........+.....+.+|...|.. ++|++....++++ ++|+.+.|||++ +.+ +.....+|.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~ 272 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHS 272 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccC
Confidence 99999999997643333334444668899999999 8998877766655 899999999999 455 666677776
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
.. |.|+.+.+.++.+|++|+.|++|++||+|+...... .+.+|+..|.+|.|+|+ ....|++++.|+.+.+||+.
T Consensus 273 ~~-vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 273 AE-VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred Cc-eeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEEeCCC-CCceeEecccCCcEEEEecc
Confidence 65 999977777888999999999999999998775544 45578899999999999 88999999999999999997
Q ss_pred CCC-------------cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 000697 1259 NHK-------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1259 ~~~-------------~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g 1302 (1348)
.-+ +++.+..+|...|..+.|+|+.+ .|++.+.|+.+.||+...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 532 34566778999999999999988 677889999999999653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=215.66 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=220.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-e-----------------eCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-F-----------------DNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~-~-----------------~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|...|.+|+++|++++.++++.+|+|.=|++.+|+.... + +.|. ..|.+++. ++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~---keil~~av--S~D 213 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV---KEILTLAV--SSD 213 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc---ceeEEEEE--cCC
Confidence 45778999999999999999999999999999988864411 1 1333 67899999 889
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
+.+|++|+.|..|.||+..+ . +.+ +.+.+|.+.|.+ ++|......+++++.|+.|++|++.... .+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t--~--ehv---~~~~ghr~~V~~----L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDT--L--EHV---KVFKGHRGAVSS----LAFRKGTSELYSASADRSVKVWSIDQLS-YVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcc--c--chh---hcccccccceee----eeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence 99999999999999999966 2 222 557899999988 8888888899999999999999999988 8899
Q ss_pred ecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1174 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1174 l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
+.+|++. |.+|... ..++.+.+|+.|+++++|++....++ .+.+|.+.+-|++|-. ...+++|+.||.|.
T Consensus 282 lyGHqd~-v~~IdaL-~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In---~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDG-VLGIDAL-SRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFIN---DEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccc-eeeechh-cccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEec---ccceeeccCCceEE
Confidence 9999887 9999544 45677777889999999999544322 2346678999999975 57899999999999
Q ss_pred EEEcCCCCcceEEEe-cC-----------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc--eEEEEeccCCcccccc
Q 000697 1254 FLDIRNHKDAYLTID-AH-----------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~-~h-----------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~--~l~~i~~~h~~f~~~~ 1319 (1348)
+|++-+. +++.+.. +| ..+|++++..|...++|+|+.+|.|++|.+... .+..+.. .+ -
T Consensus 352 LWs~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~-ls-----~ 424 (479)
T KOG0299|consen 352 LWSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS-LS-----L 424 (479)
T ss_pred Eeeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee-cc-----c
Confidence 9999987 6666554 33 127999999999999999999999999996432 2222221 11 2
Q ss_pred cCCeEEEEEeCCCCEEEEEE
Q 000697 1320 IGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs 1339 (1348)
.+.|++++|+++|..+++|.
T Consensus 425 ~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccEEEEEEEccCCCEEEEec
Confidence 37899999999999766663
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-22 Score=229.68 Aligned_cols=279 Identities=21% Similarity=0.337 Sum_probs=220.6
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1040 TALLQ-PFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1040 sl~fs-pdg~~Latgs~dg~I~VWd~~t~~------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.+..+ |.+++|.+|+.||.|++|+..... .+.+++.|. +.|..+.. -.+++.|+++|.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIIL--CGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHh--hcCCCceEEecCCceEEEeecc
Confidence 44454 456689999999999999876432 366788898 89999998 4588899999999999999986
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEE-ecCCCeEEEEECCCeEEEEECCCCce-e--------eeeec-CCCCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQ-M--------VNPIP-SSSDCS 1181 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~w-s~~~~~Ll~gg~Dg~IrVWDl~t~~~-~--------v~~l~-~~~~~~ 1181 (1348)
. +. ..+..++..|...|.+ +++ -++...+++||-|+.|.+||++++.. . ...+. ++.. .
T Consensus 104 ~--~~---~~c~stir~H~DYVkc----la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-s 173 (735)
T KOG0308|consen 104 K--DN---TFCMSTIRTHKDYVKC----LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-S 173 (735)
T ss_pred c--Cc---chhHhhhhcccchhee----eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-c
Confidence 5 22 2344678999999999 666 66778888889999999999997630 1 22233 3334 4
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
|.++ ..++.|..|++|+..+.+++||.|+.++..+ .+||...|..+..+++ |..++++|.||+|++||+...
T Consensus 174 iYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kimk----LrGHTdNVr~ll~~dD--Gt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 174 IYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK----LRGHTDNVRVLLVNDD--GTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred eeee-ecCCcceEEEecCcccceEEeccccccceee----eeccccceEEEEEcCC--CCeEeecCCCceEEeeecccc-
Confidence 9999 6677889999999999999999999885443 3388899999999999 999999999999999999987
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
.++.++..|...|+++..+|+-..+.+|+.||.|..=|+......++-...+ .+|..+..+.+..-+-+++.|
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d-------aPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED-------APVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC-------CchhhhhhccccCCceeeecc
Confidence 8999999999999999999999999999999999998866522222222022 567777776555555666778
Q ss_pred CeEEEcC
Q 000697 1342 ACVSIHS 1348 (1348)
Q Consensus 1342 g~I~IWd 1348 (1348)
+.|+-|.
T Consensus 319 s~I~rW~ 325 (735)
T KOG0308|consen 319 SSIKRWK 325 (735)
T ss_pred ccceecC
Confidence 8888773
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=219.31 Aligned_cols=254 Identities=17% Similarity=0.316 Sum_probs=198.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEE---eeeecccCCCCcccccceEEEEecC-CCeEEEEECC
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV---TAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEV 1156 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv---s~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~D 1156 (1348)
+.|..+.+.| ++..++++++..+.|.|||........... ..--.+.+|...-.+ +.|++. .+.+++++.|
T Consensus 125 gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g----lsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 125 GEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYG----LSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccc----cccccccceeEeeccCC
Confidence 6888888874 688899999999999999986533332211 011246788875444 889765 5678888999
Q ss_pred CeEEEEECCCCce------eeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000697 1157 SSIMLWDLEKEQQ------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230 (1348)
Q Consensus 1157 g~IrVWDl~t~~~------~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~ 1230 (1348)
+.|++||+..... ....+.+|.+. |..+++...+.++|.+.+.||.+.|||.|++. .+......+|.+.|.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~-VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDV-VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcc-eehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccccCCcee
Confidence 9999999986541 23455666665 99998877788999999999999999999632 111123457889999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC--CceE--
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQL-- 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~--g~~l-- 1305 (1348)
|++|+|. ++..||+||.|++|++||+|+...++.++.+|+..|.++.|+|+.. +||+++.|+.+.|||++ |+..
T Consensus 277 ~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999998 7899999999999999999998899999999999999999999854 89999999999999964 2221
Q ss_pred --------EEEeccCCcccccccCCeEEEEEeCCCCE-EEEEECCCeEEEcC
Q 000697 1306 --------GTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 --------~~i~~~h~~f~~~~~~~Vtslafspdg~~-Latgs~Dg~I~IWd 1348 (1348)
.-+.. | ++|.+.|..+.|+|+..+ +++.+.|+.+.||.
T Consensus 356 eda~dgppEllF~-H----gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAEDGPPELLFI-H----GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhccCCcceeEE-e----cCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 11111 3 257789999999999965 66777899999994
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=218.66 Aligned_cols=282 Identities=15% Similarity=0.229 Sum_probs=229.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|+.-|.++.++...+++.||+ .|.|+|||+... ..+..+...+ .+.-|.++.. .+||..|++|+.-.++.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL--~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKL--LPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC-cccceeeeEe--cCCCceEEeccccceeee
Confidence 34667788999999999999999 899999999642 2333333322 2256888888 689999999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||+..... ++. ..+......... ++.++|.+..++++.||.|.|||+.... .++.+++|.++ +.|| ..
T Consensus 492 WDLAapTp--rik---aeltssapaCyA----La~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG-ascI-di 559 (705)
T KOG0639|consen 492 WDLAAPTP--RIK---AELTSSAPACYA----LAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI-DI 559 (705)
T ss_pred eeccCCCc--chh---hhcCCcchhhhh----hhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC-ceeE-Ee
Confidence 99976222 211 112222222333 7889999999999999999999999999 99999999998 9999 78
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+.+|..|.+|+-|.+||.||+|.+...... .+ .+.|.++...|. +.+++.|-.++.|.+...... ....+.
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqh--dF---~SQIfSLg~cP~--~dWlavGMens~vevlh~skp--~kyqlh 630 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DF---SSQIFSLGYCPT--GDWLAVGMENSNVEVLHTSKP--EKYQLH 630 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhh--hh---hhhheecccCCC--ccceeeecccCcEEEEecCCc--cceeec
Confidence 899999999999999999999988743321 22 478999999999 999999999999999888744 556677
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-|+.-|.++.|.+.|+++++.+.|..+..|. --|..+...+. .++|.++..+.+.++++||+.|....||
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCcceeeeeccCceEEEecCCCcceEEE
Confidence 7899999999999999999999999999999 45776666554 4789999999999999999999888776
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=224.64 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=221.8
Q ss_pred ccCCcccccccCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1022 KLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1022 kl~~~i~~Wd~~~~--------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
+....+.+|+.... +-+.+..|-|.+.++++|...|.+.|||+.+...+.++++|. +.|.+++. .+|
T Consensus 391 ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---gaIWsi~~--~pD 465 (888)
T KOG0306|consen 391 GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD---GAIWSISL--SPD 465 (888)
T ss_pred cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc---cceeeeee--cCC
Confidence 44567899998854 346678899999999999999999999999999999999999 99999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCC---CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQK---DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~---~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
+..++|||.|.+|++||..-.. +....+ ........-....-.+++.++|++.+++++=-|.+|+||-+.+-+ .
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~--lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-F 542 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKV--LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-F 542 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCccccee--eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-e
Confidence 9999999999999999984311 111110 000001111122223458999999999999999999999999988 7
Q ss_pred eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1171 v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
..++.+|.- +|.|| -.+++++++++|+.|..|++|-+.-+. +.+.+ -+|...|.++.|.|. ...+.+++.||
T Consensus 543 flsLYGHkL-PV~sm-DIS~DSklivTgSADKnVKiWGLdFGD-CHKS~---fAHdDSvm~V~F~P~--~~~FFt~gKD~ 614 (888)
T KOG0306|consen 543 FLSLYGHKL-PVLSM-DISPDSKLIVTGSADKNVKIWGLDFGD-CHKSF---FAHDDSVMSVQFLPK--THLFFTCGKDG 614 (888)
T ss_pred eeeeccccc-ceeEE-eccCCcCeEEeccCCCceEEeccccch-hhhhh---hcccCceeEEEEccc--ceeEEEecCcc
Confidence 888888866 59999 789999999999999999999999988 43332 367799999999998 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
.|+-||-... +.++++.+|...|+|++++|+|.+++++|.|..|++|..+.+
T Consensus 615 kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 615 KVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEeechhhh-hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9999999988 899999999999999999999999999999999999995543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-22 Score=208.10 Aligned_cols=240 Identities=19% Similarity=0.302 Sum_probs=206.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|.+.|.+..++.+-..-|+++.|-+-+|||.-+|..+.+|+.. .-|.+++| +.|.++|+||+.++.+||||+.
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk----hivk~~af--~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK----HIVKAVAF--SQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh----heeeeEEe--cccchhhhccchHHHhhhhhcc
Confidence 46688999999998889999999999999999999999988743 37899999 7899999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
..+..+ ..+.+|.+.|+. +.|...+..|+++.+|++||+||.+++. .++++... .+|+++ -.+++|
T Consensus 131 ~p~App------~E~~ghtg~Ir~----v~wc~eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~~--s~VtSl-Evs~dG 196 (334)
T KOG0278|consen 131 RPKAPP------KEISGHTGGIRT----VLWCHEDKCILSSADDKTVRLWDHRTGT-EVQSLEFN--SPVTSL-EVSQDG 196 (334)
T ss_pred CCCCCc------hhhcCCCCccee----EEEeccCceEEeeccCCceEEEEeccCc-EEEEEecC--CCCcce-eeccCC
Confidence 633333 357899999998 8888889999999999999999999999 89988874 348999 567788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1271 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~ 1271 (1348)
+++.++ ..++|.+||..+-. .++.++. ...|.+..++|+ ...+++|+.|+.++.||..++ +.+..+ ++|.
T Consensus 197 ~ilTia-~gssV~Fwdaksf~-~lKs~k~----P~nV~SASL~P~--k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 RILTIA-YGSSVKFWDAKSFG-LLKSYKM----PCNVESASLHPK--KEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHF 267 (334)
T ss_pred CEEEEe-cCceeEEecccccc-ceeeccC----ccccccccccCC--CceEEecCcceEEEEEeccCC-ceeeecccCCC
Confidence 877665 46789999999877 5554432 267999999999 799999999999999999998 566664 8999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
++|.|+.|+|+|...|+||.||+|++|...
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999999999999954
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=224.14 Aligned_cols=228 Identities=13% Similarity=0.184 Sum_probs=178.2
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeC
Q 000697 1032 TRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASC 1102 (1348)
Q Consensus 1032 ~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~ 1102 (1348)
..|.+.|.+++|+| ++.+|++|+.||+|+|||+.++ +.+..+.+|. ..|.+++| ++++ ++|++|+.
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---~~V~~l~f--~P~~~~iLaSgs~ 146 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---KKVGIVSF--HPSAMNVLASAGA 146 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---CcEEEEEe--CcCCCCEEEEEeC
Confidence 35678999999999 7889999999999999999765 3467788898 89999999 5654 79999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~V 1182 (1348)
||+|+|||+.+ +.. . ..+.+|...|.+ ++|++++..+++++.||.|++||+++++ .+..+..|.+..+
T Consensus 147 DgtVrIWDl~t--g~~--~---~~l~~h~~~V~s----la~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~ 214 (493)
T PTZ00421 147 DMVVNVWDVER--GKA--V---EVIKCHSDQITS----LEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKS 214 (493)
T ss_pred CCEEEEEECCC--CeE--E---EEEcCCCCceEE----EEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcc
Confidence 99999999976 322 2 346788888887 9999999999999999999999999998 8888888866534
Q ss_pred EEEEEecCCCCEEEEEe----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEc
Q 000697 1183 SALTASQVHGGQLAAGF----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDI 1257 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs----~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDl 1257 (1348)
..+ .+.++++.+++++ .|+.|++||+++.......... .+...+....|+++ ++.+++|+ .||.|++||+
T Consensus 215 ~~~-~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d--~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 215 QRC-LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDED--TNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEE-EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCC--CCEEEEEEeCCCeEEEEEe
Confidence 444 4455666666543 4799999999976644443321 22345666778888 88888877 5999999999
Q ss_pred CCCCcceEEEec-CCCCeEEEEEeCC
Q 000697 1258 RNHKDAYLTIDA-HRGSLSALAVHRH 1282 (1348)
Q Consensus 1258 r~~~~~v~t~~~-h~~~VtsLa~spd 1282 (1348)
+++ ..+..... +..++.+++|.|.
T Consensus 290 ~~~-~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 290 MNE-RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCC-ceEEEeeccCCCCCcceEeccc
Confidence 987 55555443 4556788888885
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=210.38 Aligned_cols=243 Identities=17% Similarity=0.279 Sum_probs=216.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|.|+.|+.|...||+|+.||.|+||.+++|.+++.|. +|. .+|+|+.| +.|+..+++++.|.++||.-+..
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt---kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT---KGVTCLSF--SRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc---cCeeEEEE--ccCcchhhcccccceEEEecccc
Confidence 4789999999999999999999999999999999999997 788 89999999 88999999999999999998865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg 1192 (1348)
|+. . +.+.+|...|+. ..|.++|.++++++.||+|+||+..+.+ |+.+++. ..+.+|.++..++.+.
T Consensus 338 --GK~--L---KEfrGHsSyvn~----a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 338 --GKC--L---KEFRGHSSYVNE----ATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred --chh--H---HHhcCccccccc----eEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCC
Confidence 332 2 668999999998 8899999999999999999999999999 9999874 3456789987888888
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
..++.+...++|.+-++... .++.+..-....+...+.+.+|. |.++.+.+.|+.+..|.+.++ ..-+++..|+.
T Consensus 406 eh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi~~~lSpk--GewiYcigED~vlYCF~~~sG-~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFINAILSPK--GEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEK 480 (508)
T ss_pred ceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceEEEEecCC--CcEEEEEccCcEEEEEEeecC-ceeeeeecccc
Confidence 99999999999999988653 56666444444567778889999 999999999999999999998 78899999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.+-.++-||+.+.+|+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=198.57 Aligned_cols=246 Identities=19% Similarity=0.262 Sum_probs=199.4
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
+.|.... +.|+++.| +++|.+|++++.|.++++||... +++. +++..+...+.. ++|......+
T Consensus 8 k~f~~~~---~~i~sl~f--s~~G~~litss~dDsl~LYd~~~--g~~~-----~ti~skkyG~~~----~~Fth~~~~~ 71 (311)
T KOG1446|consen 8 KVFRETN---GKINSLDF--SDDGLLLITSSEDDSLRLYDSLS--GKQV-----KTINSKKYGVDL----ACFTHHSNTV 71 (311)
T ss_pred cccccCC---CceeEEEe--cCCCCEEEEecCCCeEEEEEcCC--Ccee-----eEeecccccccE----EEEecCCceE
Confidence 3444444 78999999 89999999999999999999976 4332 334555555555 7787777777
Q ss_pred EEEEC--CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1151 YASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1151 l~gg~--Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
+.++. |.+||..++.+.+ .++.+.+|... |++| ..+|.++.|++++.|++|++||+|..++..... . ..
T Consensus 72 i~sStk~d~tIryLsl~dNk-ylRYF~GH~~~-V~sL-~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~-----~~ 142 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNK-YLRYFPGHKKR-VNSL-SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-L-----SG 142 (311)
T ss_pred EEccCCCCCceEEEEeecCc-eEEEcCCCCce-EEEE-EecCCCCeEEecccCCeEEeeEecCCCCceEEe-c-----CC
Confidence 77764 8899999999999 99999999887 9999 667778999999999999999999777433221 1 33
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCc
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGE 1303 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~ 1303 (1348)
-..++|.|. |-++|+|...+.|++||+|.. +.+..++... ....+.+.|+|+|++|+.++..+.+++.| .+|.
T Consensus 143 ~pi~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 143 RPIAAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CcceeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 446789999 999999998889999999975 3566776644 56789999999999999999999999999 8999
Q ss_pred eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1304 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1304 ~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.++.. +.. . ..---+..|.||++++++|+.||+|.+|+
T Consensus 221 ~~~tfs~-~~~---~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 221 VKSTFSG-YPN---A-GNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EeeeEee-ccC---C-CCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 9999887 541 1 11225678999999999999999999996
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=219.74 Aligned_cols=273 Identities=15% Similarity=0.312 Sum_probs=217.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--EeeCCCCCCCCeEE-EEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISK-LCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~--~~~~h~~~~~~Its-L~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|...|..+++.+. ..+++++.||++++|+-..++.+. .+.+|. +-|.. ++|.. .++..|++|+.|+.|.+
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAE-SDKGRLVVGGMDTTIIV 85 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceecc-ccCcceEeecccceEEE
Confidence 345667777777654 488999999999999987655443 466666 56665 88853 57778999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... .. ++..+.+|...|.+ +.-..+ +.+++|+.|.++++|-.. + +...+++|... |+++..+
T Consensus 86 ~~~~~--~~-----P~~~LkgH~snVC~----ls~~~~-~~~iSgSWD~TakvW~~~--~-l~~~l~gH~as-VWAv~~l 149 (745)
T KOG0301|consen 86 FKLSQ--AE-----PLYTLKGHKSNVCS----LSIGED-GTLISGSWDSTAKVWRIG--E-LVYSLQGHTAS-VWAVASL 149 (745)
T ss_pred EecCC--CC-----chhhhhccccceee----eecCCc-CceEecccccceEEecch--h-hhcccCCcchh-eeeeeec
Confidence 99854 22 23568999999987 444434 449999999999999754 3 66778988776 9999666
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+. + .+++|+.|.+|++|.-. + ..+ ++.+|.+.|+.+++-++ ..|++++.||.|++|++. + +++..+.
T Consensus 150 ~e-~-~~vTgsaDKtIklWk~~--~-~l~---tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~~-g-e~l~~~~ 216 (745)
T KOG0301|consen 150 PE-N-TYVTGSADKTIKLWKGG--T-LLK---TFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDLD-G-EVLLEMH 216 (745)
T ss_pred CC-C-cEEeccCcceeeeccCC--c-hhh---hhccchhheeeeEEecC---CCeEeecCCceEEEEecc-C-ceeeeee
Confidence 43 3 89999999999999752 2 334 55688999999999875 678999999999999995 3 7999999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|...|.+++...++..++++++|++++||+.. +..+.+.- .. ..|+++.+-++|. +++|++||.|+||.
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~l-Pt-------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITL-PT-------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEec-Cc-------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 999999999988888899999999999999966 67777764 22 5799999988886 56778899999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=228.26 Aligned_cols=241 Identities=19% Similarity=0.362 Sum_probs=203.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|.++|.+++|..-++.|++|+.|.+++|||..+|++...+.+|. ..|.++.. .+..+++|+.|.+|++|++..
T Consensus 248 H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~----~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 248 HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT---SSVRCLTI----DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC---ceEEEEEc----cCceEeeccCCceEEEEeccC
Confidence 45889999998888899999999999999999999999999999 88888876 667888999999999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+. .+ +.+.+|...|++ +..+ +..+++|+.||+|+|||+.+.+ ++.++.+|... |+++ ..... +
T Consensus 321 --~~--~l---~l~~~h~~~V~~----v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~-V~sl-~~~~~-~ 383 (537)
T KOG0274|consen 321 --GA--CL---NLLRGHTGPVNC----VQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGR-VYSL-IVDSE-N 383 (537)
T ss_pred --cc--eE---EEeccccccEEE----EEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcce-EEEE-EecCc-c
Confidence 32 22 446679999988 5554 8899999999999999999999 99999998776 9999 44333 8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-CCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-HRG 1272 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-h~~ 1272 (1348)
.+++|+.|++|++||+++...++. +..+|..-+..+.+. ++.|++++.||+|++||..++ ++++++.+ |.+
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~----~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~ 455 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLR----DNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVG 455 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccc----cceeEeccccccEEEeecccC-ceeeeeccCCcc
Confidence 999999999999999999832444 445677888777664 779999999999999999998 89999998 678
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1308 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i 1308 (1348)
.|+.+++. ...+++++.||.+++||+. +.....+
T Consensus 456 ~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 456 GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 88888876 5688899999999999954 5554444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=209.85 Aligned_cols=286 Identities=15% Similarity=0.243 Sum_probs=223.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEec
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~--t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl 1111 (1348)
.++|++|.|||..+.|++|+.||+++||.++ ....++.+.-.. .+|.+.+| .++|. .+++++.......||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f--~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEF--APNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc---Cccceeee--cCCCceEEEecccceEEEEeec
Confidence 3789999999999999999999999999876 334555555445 78999999 67888 8999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCC-cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKP-GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~-~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
.+ .+...+ ....++.. .+.. ...++++.+|+..|..|.|.+....+++ .+.+++.. +.|..+ .++.
T Consensus 288 e~--ak~~k~---~~~~g~e~~~~e~----FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~Kie--G~v~~~-~fsS 354 (514)
T KOG2055|consen 288 ET--AKVTKL---KPPYGVEEKSMER----FEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIE--GVVSDF-TFSS 354 (514)
T ss_pred cc--cccccc---cCCCCcccchhhe----eEecCCCCeEEEcccCceEEeehhhhhh-hhheeeec--cEEeeE-EEec
Confidence 76 333323 33444442 2333 6778999999999999999999999998 88887753 348888 5567
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-----CCcceE
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-----HKDAYL 1265 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~-----~~~~v~ 1265 (1348)
++..|++.+.+|.|.+||++... +.+.+.... .-.-++++.+++ +.+|++||..|.|.|||..+ ..+++.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G--~v~gts~~~S~n--g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNS-CLHRFVDDG--SVHGTSLCISLN--GSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcc-eEEEEeecC--ccceeeeeecCC--CceEEeccCcceEEEeccchhhccCCCCchh
Confidence 89999999999999999999996 666664331 122345666677 99999999999999999653 226777
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCceE-EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSA--KQLIKVFSLEGEQL-GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~--Dg~I~Vwd~~g~~l-~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
++..-...|+++.|++++.+||.+|. +..+++-.+....+ ..+.. .....+.|+||+|+|.+.+||.|..+|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-----~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-----SNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-----CCCcccceEEEEecCCCceEEeecCCC
Confidence 77777788999999999999988864 55677776543222 22222 234568899999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.|.+|.
T Consensus 505 rv~l~k 510 (514)
T KOG2055|consen 505 RVHLFK 510 (514)
T ss_pred ceeeEe
Confidence 999994
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=213.62 Aligned_cols=239 Identities=16% Similarity=0.283 Sum_probs=198.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...+.++.|-.||++|++|+..|.|+|||..+...++.+.+|. .+|..+.|. ..++..+++|++|+.+++||+.+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~---apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~- 142 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ---APVHVTKFS-PQDNTMLVSGSDDKVVKYWDLST- 142 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc---CceeEEEec-ccCCeEEEecCCCceEEEEEcCC-
Confidence 3579999999999999999999999999987777888899999 899999995 36778899999999999999976
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.... ..+.+|++.|++ .+|+|.++ .+++||.||.|++||++.....+.++. ++.+|.++ .+-+.|.
T Consensus 143 -a~v~-----~~l~~htDYVR~----g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~v-l~lpsgs 209 (487)
T KOG0310|consen 143 -AYVQ-----AELSGHTDYVRC----GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESV-LALPSGS 209 (487)
T ss_pred -cEEE-----EEecCCcceeEe----eccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeE-EEcCCCC
Confidence 2221 358899999999 78888776 566668999999999998742565655 35679999 4456778
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.+++++. ..|++||+-++......+ ..|...|+|+++..+ +..|++|+-||.|++||+.+. +.+..+. ..++
T Consensus 210 ~iasAgG-n~vkVWDl~~G~qll~~~---~~H~KtVTcL~l~s~--~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~-~~~p 281 (487)
T KOG0310|consen 210 LIASAGG-NSVKVWDLTTGGQLLTSM---FNHNKTVTCLRLASD--STRLLSGSLDRHVKVFDTTNY-KVVHSWK-YPGP 281 (487)
T ss_pred EEEEcCC-CeEEEEEecCCceehhhh---hcccceEEEEEeecC--CceEeecccccceEEEEccce-EEEEeee-cccc
Confidence 8887764 589999999776555433 237799999999988 899999999999999998876 7777776 4678
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
|.+++++|++..++.|-.||.+.+-+
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeeh
Confidence 99999999999999999999887765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=215.15 Aligned_cols=287 Identities=14% Similarity=0.279 Sum_probs=221.3
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
++|++++|.-||+ ++++|+..|.+.+||++..+.+.... .|. +.|+...|. +....+++++.|..+++|=...
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~---~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY---GSVTGATFL--PGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc---CCcccceec--CCCceEeeccCCCceeEEEeeC
Confidence 7899999999997 67788888999999999888877766 676 789999994 5788999999999999997766
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEe-cCCCeEEEEECCCeEEEEE-----------------------------
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWD----------------------------- 1163 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~~~~Ll~gg~Dg~IrVWD----------------------------- 1163 (1348)
.++.+++. +.-.||..+..+ +.|. .++..++.++.|++.+.++
T Consensus 320 ~dg~pR~L---R~R~GHs~Pp~~----irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 320 GDGVPRLL---RSRGGHSAPPSC----IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred CCCcchhe---eeccCCCCCchh----eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 55666655 444566666655 3433 3444455555555555443
Q ss_pred ------------------------------------CCCCcee-eeeecCC----CCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1164 ------------------------------------LEKEQQM-VNPIPSS----SDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1164 ------------------------------------l~t~~~~-v~~l~~~----~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
.+... . ...+... .+..++++ +.+..|++.+.|+..|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-~G~~~L~~~~~~~~~~~~~av-~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-SGRHVLDPKRFKKDDINATAV-CVSFCGNFVFIGYSKG 470 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-cccEEecCccccccCcceEEE-EEeccCceEEEeccCC
Confidence 33322 1 1111111 12347777 6778999999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---------------------
Q 000697 1203 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------------------- 1261 (1348)
Q Consensus 1203 ~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--------------------- 1261 (1348)
.|-+|++.++- ....+.....|++.|++++.... ++.+++++.+|.+++||..+..
T Consensus 471 ~Id~fNmQSGi-~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 471 TIDRFNMQSGI-HRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred eEEEEEcccCe-eecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 99999999886 44444334578899999999877 8999999999999999987531
Q ss_pred -------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccC
Q 000697 1262 -------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIG 1321 (1348)
Q Consensus 1262 -------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~ 1321 (1348)
+.++.+.+|.+.|++++|||+|++|++++.|++|++|| .++..+-.+.. . .
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d--------~ 618 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-D--------S 618 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-C--------C
Confidence 12344557899999999999999999999999999999 67888887765 2 6
Q ss_pred CeEEEEEeCCCCEEEEEECC-CeEEEcC
Q 000697 1322 SVNCLTFHPYQVLLAAGSAD-ACVSIHS 1348 (1348)
Q Consensus 1322 ~Vtslafspdg~~Latgs~D-g~I~IWd 1348 (1348)
+.+++.|+|+|.+|||...| .-|++|.
T Consensus 619 ~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cceeeEECCCCCEEEEEEecCceEEEEE
Confidence 89999999999999999998 6788884
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=197.84 Aligned_cols=255 Identities=20% Similarity=0.310 Sum_probs=197.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
+.+....++.+.|.+|+|++ ....++++||.||+||+|++... +...- +....|.+++.+ ++|+.++..+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~-g~~~~----ka~~~~~~PvL~----v~WsddgskV 87 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNS-GQLVP----KAQQSHDGPVLD----VCWSDDGSKV 87 (347)
T ss_pred cceecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecC-Ccccc----hhhhccCCCeEE----EEEccCCceE
Confidence 34455556678999999943 36677889999999999999762 22111 456678888877 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
++|+.|+.+++||+.+++ +..+..|.. +|.++.|..... ..|++|+-|.+|+.||.|.... +..+ .+. ..+
T Consensus 88 f~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~-~LP---eRv 159 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ--VSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATL-QLP---ERV 159 (347)
T ss_pred EeeccCCceEEEEccCCC--eeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCe-eeee-ecc---cee
Confidence 999999999999999998 667777755 499997775433 5889999999999999998874 4444 222 567
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---ceE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG---EQL 1305 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g---~~l 1305 (1348)
.++..- ...++++..+..|.+|+++++....+.+. .-+-.++|++...++...|.|+-+|++.|..++. +.-
T Consensus 160 Ya~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 160 YAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred eehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 777663 56889999999999999986532222222 1244689999999999889999999999998653 455
Q ss_pred EEEeccCCccc--ccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFM--AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~--~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+|++ |..-. ......|++++|||....|+|+|+||++.+||
T Consensus 236 FtFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 236 FTFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 57888 65311 12356799999999999999999999999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=195.71 Aligned_cols=249 Identities=14% Similarity=0.238 Sum_probs=199.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-----CeEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIR 1107 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~Ir 1107 (1348)
.|.+.|.|+..+-+.++|++|+.|.++++||+++|+.+.+++... .|..+.| +.+|++++...++ +.|.
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~----~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS----PVKRVDF--SFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----eeEEEee--ccCCcEEEEEehhhcCcceEEE
Confidence 356889999999999999999999999999999999999998776 8999999 7788888877554 6799
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
++|+........-..++..+..+...++. +-|.+-+..|++|..||.|.+||++++++.+.....|... |+.| .
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~----a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-Ind~-q 197 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITS----ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-INDL-Q 197 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceee----eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-cccc-c
Confidence 99997533222112223445656666665 8899999999999999999999999987456666666664 9999 7
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc--E------------E
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD--I------------Q 1253 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~--I------------~ 1253 (1348)
++++..+|++|+.|.+-++||.++-. ..+++.+. .+|++.+++|. ...++.|+.... | +
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te----~PvN~aaisP~--~d~VilgGGqeA~dVTTT~~r~GKFEAr 270 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE----RPVNTAAISPL--LDHVILGGGQEAMDVTTTSTRAGKFEAR 270 (327)
T ss_pred ccCCcceEEecccCccceeeecccee-eEEEeeec----ccccceecccc--cceEEecCCceeeeeeeecccccchhhh
Confidence 88999999999999999999999988 67777554 69999999998 555555543211 2 2
Q ss_pred EEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+|++-.. +.+..+++|-++|++++|||+|+..++|+.||.|++.-.+
T Consensus 271 Fyh~i~e-EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 271 FYHLIFE-EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHHH-HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 2222222 5677888999999999999999999999999999998644
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=195.34 Aligned_cols=242 Identities=19% Similarity=0.282 Sum_probs=197.9
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCe
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGY 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~ 1149 (1348)
+.+++|. ..|.+++| +.+|..|++|+.|+++++|++.......+ ....+|.+.|.. ++|++. ...
T Consensus 14 r~~~~~~---~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~svdq----l~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHV---QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDSVDQ----LCWDPKHPDL 79 (313)
T ss_pred HHhhhhh---hcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----hcccCCCcchhh----heeCCCCCcc
Confidence 3456676 78999999 78999999999999999999976321112 236788888888 777665 456
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++++.|++|++||+++++ ++..+....+. |.- .++|+|+++++|..|..|.+.|.|+.+ ..... .....+
T Consensus 80 ~atas~dk~ir~wd~r~~k-~~~~i~~~~en-i~i--~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~----~~~~e~ 150 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGK-CTARIETKGEN-INI--TWSPDGEYIAVGNKDDRITFIDARTYK-IVNEE----QFKFEV 150 (313)
T ss_pred eEEecCCceEEEEEeccCc-EEEEeeccCcc-eEE--EEcCCCCEEEEecCcccEEEEEecccc-eeehh----ccccee
Confidence 7777899999999999999 88888766554 544 467899999999999999999999887 33332 123678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTI 1308 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i 1308 (1348)
..++|+-+ +++++.....|.|.|...... +++.++++|...-.|+.|+|+|+++|+|+.|..+.+||++. -++..+
T Consensus 151 ne~~w~~~--nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 151 NEISWNNS--NDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeecCC--CCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 89999965 888888888899999999988 89999999999999999999999999999999999999653 344445
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.. ++ -+|..++|+-+|++||+||.|..|-|
T Consensus 228 sR-ld-------wpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 SR-LD-------WPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cc-cc-------CceEEEEeccCcceeeccCccceEEe
Confidence 44 43 68999999999999999999998865
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=221.71 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=227.3
Q ss_pred CcccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE
Q 000697 1025 NPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA 1100 (1348)
Q Consensus 1025 ~~i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg 1100 (1348)
.....|..+......+|...++-..+++++ ...+.||..... ++...++........+..++|. +-+.++|+|+
T Consensus 29 l~~~~~~~~~k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~ 106 (839)
T KOG0269|consen 29 LPYDKMNCKLKAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATC 106 (839)
T ss_pred ccchheeeecccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheee
Confidence 344557777778899999999999999888 668888877543 2222222222112356678885 5688999999
Q ss_pred eCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1101 s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~-Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
+..|.|.+||+... ....+. ..+..|...+.+ ++|++...+ |++|+.||.|++||++..+ -..++.+..+
T Consensus 107 s~nG~i~vWdlnk~-~rnk~l---~~f~EH~Rs~~~----ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSE 177 (839)
T KOG0269|consen 107 STNGVISVWDLNKS-IRNKLL---TVFNEHERSANK----LDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSE 177 (839)
T ss_pred cCCCcEEEEecCcc-ccchhh---hHhhhhccceee----eeeccCCccEEEecCCCceEEEEeeeccc-ccccccccch
Confidence 99999999999652 222332 357899999988 999887654 5666799999999999988 7888888777
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
+ |..+.+.+..++.|+++...|.+++||+|..+..... +..|.++|.++.|+|+ +.+||||+.|+.|+|||+..
T Consensus 178 S-iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k---~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 178 S-IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK---LTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred h-hhceeeccCCCceEEEecCCceEEEeeccCchhHHHH---hhcccCceEEEeecCC--CceeeecCCCccEEEEeccC
Confidence 6 9999888888999999999999999999988755543 4577899999999998 99999999999999999985
Q ss_pred CC-cceEEEecCCCCeEEEEEeCCCC-EEEEEe--CCCcEEEEEcCCce--EEEEeccCCcccccccCCeEEEEEeC-CC
Q 000697 1260 HK-DAYLTIDAHRGSLSALAVHRHAP-IIASGS--AKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHP-YQ 1332 (1348)
Q Consensus 1260 ~~-~~v~t~~~h~~~VtsLa~spdg~-~LasgS--~Dg~I~Vwd~~g~~--l~~i~~~h~~f~~~~~~~Vtslafsp-dg 1332 (1348)
.. .+..++. ...+|.++.|-|..+ .||+++ .|-.|+|||++..- ..++.. |. ..++.++|-. +.
T Consensus 252 ~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~-------~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 252 SRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HT-------DSVTGIAWDSGDR 322 (839)
T ss_pred CCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cC-------ccccceeccCCCc
Confidence 42 3444444 346899999999876 566664 47789999976533 345555 54 7899999965 45
Q ss_pred CEEEEEECCCeEE
Q 000697 1333 VLLAAGSADACVS 1345 (1348)
Q Consensus 1333 ~~Latgs~Dg~I~ 1345 (1348)
..|.+++.||+|.
T Consensus 323 ~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 323 INLWSCSKDGTVL 335 (839)
T ss_pred eeeEeecCccHHH
Confidence 7888999999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=219.19 Aligned_cols=222 Identities=13% Similarity=0.170 Sum_probs=170.4
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCc-------eee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQ-------QMV 1171 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~-------~~v 1171 (1348)
|+.+|.|++|+... . ..+ ..+.+|...|.+ ++|+|+ +..|++|+.||.|++||+.++. .++
T Consensus 50 GG~~gvI~L~~~~r--~--~~v---~~L~gH~~~V~~----lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMR--K--PPV---IKLKGHTSSILD----LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCC--C--ceE---EEEcCCCCCEEE----EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence 67788999999754 2 222 457899999988 999997 6788899999999999997642 023
Q ss_pred eeecCCCCCCeEEEEEecCCCC-EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1172 NPIPSSSDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
..+.+|... |.++ .++|++. ++++|+.||+|++||+++++. ...+ .|...|.+++|+|+ |.+|++++.|+
T Consensus 119 ~~L~gH~~~-V~sV-af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i----~~~~~V~Slswspd--G~lLat~s~D~ 189 (568)
T PTZ00420 119 CILKGHKKK-ISII-DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQI----NMPKKLSSLKWNIK--GNLLSGTCVGK 189 (568)
T ss_pred EEeecCCCc-EEEE-EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEE----ecCCcEEEEEECCC--CCEEEEEecCC
Confidence 456666654 9999 5667665 457899999999999998873 3333 13468999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEE-----EEeCCCCEEEEEeCCC----cEEEEEcC--CceEEEEeccCCcccccc
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSAL-----AVHRHAPIIASGSAKQ----LIKVFSLE--GEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsL-----a~spdg~~LasgS~Dg----~I~Vwd~~--g~~l~~i~~~h~~f~~~~ 1319 (1348)
.|+|||++++ ..+.++.+|.+.+.+. .|++++.+|++++.|+ .|+|||+. ++.+..+.. +. +
T Consensus 190 ~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~-----~ 262 (568)
T PTZ00420 190 HMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DN-----A 262 (568)
T ss_pred EEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cC-----C
Confidence 9999999997 7888999998765433 3458888888887764 79999965 455655543 22 2
Q ss_pred cCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.+......+++.++++|+.|+.|++|+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 34444555566789999999999999995
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=193.36 Aligned_cols=242 Identities=17% Similarity=0.290 Sum_probs=196.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|.+.|++++. +++++|+|+.|.+|+|||..+.+.+..+-.|. +.|+++.|........|++|++||.|.+|+.
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 346789999998 48899999999999999999999999999998 8999999943223348999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
+..+++ ..+.+|.+.|+. ++.+|.+..-++.|.|+.++.||+-+++ .-...+-.+. -+.+ .|.+.
T Consensus 115 ----~~W~~~---~slK~H~~~Vt~----lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~--at~v-~w~~~ 179 (362)
T KOG0294|consen 115 ----GSWELL---KSLKAHKGQVTD----LSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNK--ATLV-SWSPQ 179 (362)
T ss_pred ----CCeEEe---eeecccccccce----eEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCc--ceee-EEcCC
Confidence 556666 778899999998 8999999999999999999999999887 4444443333 2345 56789
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
|.+|+.+..+ .|-+|.+.+.. +.... .. ...+.++.|. .+.++++|..|+.|++||.... .+...+.+|.
T Consensus 180 Gd~F~v~~~~-~i~i~q~d~A~-v~~~i-~~---~~r~l~~~~l---~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~ 249 (362)
T KOG0294|consen 180 GDHFVVSGRN-KIDIYQLDNAS-VFREI-EN---PKRILCATFL---DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHE 249 (362)
T ss_pred CCEEEEEecc-EEEEEecccHh-Hhhhh-hc---cccceeeeec---CCceEEEecCCceEEEeccCCC-ccceeeecch
Confidence 9999988876 58899888765 33222 11 1346666664 4789999999999999999986 8999999999
Q ss_pred CCeEEEEE--eCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1272 GSLSALAV--HRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1272 ~~VtsLa~--spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
..|.++.+ .|++.+|+++|.||.|+|||++.+
T Consensus 250 ~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999985 456789999999999999997644
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=215.97 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=199.0
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC--c
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE--Q 1168 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~--~ 1168 (1348)
-+.+++|+|||.||.|++|++....+..... ....+..|...|..+.++ .+++.+++++.|-+|++|+.... -
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~----~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILC----GNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhh----cCCCceEEecCCceEEEeecccCcch
Confidence 3577789999999999999997644432111 134577899999985543 46779999999999999999887 5
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-eeEeec-----CC-CCCCCCeEEEEEecCCCCC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTR-----PH-TQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-~v~~~~-----~~-~~h~~~I~sl~~sp~~~g~ 1241 (1348)
|+.++..|.+. |.|++...++..++++|+-|+.|.+||+.++.. .+..+. .. .|+...|.+++.++. |.
T Consensus 109 -c~stir~H~DY-Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t 184 (735)
T KOG0308|consen 109 -CMSTIRTHKDY-VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GT 184 (735)
T ss_pred -hHhhhhcccch-heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc--ce
Confidence 88899999887 999966577889999999999999999997632 111111 12 278899999999998 89
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCccccccc
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~ 1320 (1348)
.|++|+..+.+++||.++. +.+..+++|...|.++..+++|..++++|.||+|++||+. .+++.++.. |.
T Consensus 185 ~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~------- 255 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HK------- 255 (735)
T ss_pred EEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-cc-------
Confidence 9999999999999999998 7788888999999999999999999999999999999975 567788887 65
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|+++..+|+-..+.+|+.||.|..
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEe
Confidence 66999999999999999999998864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=209.09 Aligned_cols=294 Identities=19% Similarity=0.298 Sum_probs=222.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|.+.|.++..+|.|.+|++|+.||+|+||.+.+|.+++++.... .|.|++|.+..+-..|+++-.+. +.|-+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 3467889999999999999999999999999999999999988665 89999996555555666665544 444433
Q ss_pred cCCC------Cc----------e--eEEeee------------ecccCCCCcccccceEEEEecCCCeEEEEE---CCCe
Q 000697 1112 YDQK------DK----------Q--KLVTAF------------SSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSS 1158 (1348)
Q Consensus 1112 ~~~~------~~----------~--~lvs~~------------~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~ 1158 (1348)
.-+. .+ . ..+..| +..-.|...|+. +.|+..|.+|++.. ....
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~----vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ----VTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce----eeeecCCceEEEeccCCCcce
Confidence 1100 00 0 000011 112235566666 99999999999984 3467
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
|.|.++.+.. ....+....+. |.++ .|+|...+|++++ ...|++||+.... .++.+.+. ..+|.+++++|.
T Consensus 548 VliHQLSK~~-sQ~PF~kskG~-vq~v-~FHPs~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg---~kwiS~msihp~- 618 (733)
T KOG0650|consen 548 VLIHQLSKRK-SQSPFRKSKGL-VQRV-KFHPSKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTG---SKWISSMSIHPN- 618 (733)
T ss_pred EEEEeccccc-ccCchhhcCCc-eeEE-EecCCCceEEEEe-ccceEEEehhHHH-HHHHHhcC---CeeeeeeeecCC-
Confidence 9999998877 55555544444 8888 5566666666655 4689999998865 55444333 378999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cC-----C---ceEEEE
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LE-----G---EQLGTI 1308 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~-----g---~~l~~i 1308 (1348)
|..|+.|+.|+.+..||+....++.+++..|...+++++||+.-++||+|+.||++.|+. +. . -++..+
T Consensus 619 -GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 619 -GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred -CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 999999999999999999987789999999999999999999999999999999999886 21 1 234556
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++ |.. .....|..+.|||...+|++++.||+|++|-
T Consensus 698 ~g-H~~---~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RG-HEK---TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cC-cee---ecccceEeecccCCCceEEecCCCceEEeeC
Confidence 66 541 1335688999999999999999999999983
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=210.88 Aligned_cols=248 Identities=19% Similarity=0.326 Sum_probs=203.4
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~ 1149 (1348)
...+..|. +.+..+.| -++...|++|+.|..|++|++.. ++.+++ .++.+..+.+.. ++|.+++.+
T Consensus 168 ~~~ld~h~---gev~~v~~--l~~sdtlatgg~Dr~Ik~W~v~~--~k~~~~---~tLaGs~g~it~----~d~d~~~~~ 233 (459)
T KOG0288|consen 168 LFVLDAHE---GEVHDVEF--LRNSDTLATGGSDRIIKLWNVLG--EKSELI---STLAGSLGNITS----IDFDSDNKH 233 (459)
T ss_pred hhhhhccc---cccceeEE--ccCcchhhhcchhhhhhhhhccc--chhhhh---hhhhccCCCcce----eeecCCCce
Confidence 34456677 88999999 56778999999999999999966 444444 667788888888 999999999
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++++.|+.+++|++...+ ...++.+|.+. |+++.+.. ....+++|+.|.+|++||+.... +.+..-. .+.+
T Consensus 234 ~iAas~d~~~r~Wnvd~~r-~~~TLsGHtdk-Vt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~----~S~c 305 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLR-LRHTLSGHTDK-VTAAKFKL-SHSRVVSGSADRTIKLWDLQKAY-CSKTVLP----GSQC 305 (459)
T ss_pred EEeecCCCceeeeeccchh-hhhhhcccccc-eeeehhhc-cccceeeccccchhhhhhhhhhh-eeccccc----cccc
Confidence 9999999999999999998 89999998887 99995554 34449999999999999999876 3333212 2566
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEe
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
..|..+ ...+++|..|++|++||++.. .++.+...+. .|+++..+++|..+.+++.|.++++.|..+..+....
T Consensus 306 nDI~~~----~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 306 NDIVCS----ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred cceEec----ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 777765 347899999999999999988 7888888765 8999999999999999999999999998776665433
Q ss_pred ccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1310 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1310 ~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
. -.+|... +..+.+.|||++.|+|+||.||.|+||+
T Consensus 380 s-A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 380 S-AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred e-ccccccc--cccceeEECCCCceeeeccCCCcEEEEE
Confidence 3 3334333 3489999999999999999999999996
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=222.01 Aligned_cols=244 Identities=21% Similarity=0.350 Sum_probs=188.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIM 1160 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~Ir 1160 (1348)
...+|.. .++-..++.++.. .++||.+........+...++.-+.....+. .+.|.+- .+.|++++..|.|.
T Consensus 41 ~~nAIs~--nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~----DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 41 KANAISV--NRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAA----DVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred ccceEee--cCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehh----hcccccchhhhheeecCCCcEE
Confidence 3455555 4566777777655 6788887654333333311111111111222 3778754 45677778999999
Q ss_pred EEECCC---CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1161 LWDLEK---EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1161 VWDl~t---~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
+||+.. ++ .+..+..|... |+++.+.+...++|++|+.||.|++||+|..+. ..++ .+....|+.|.|+|.
T Consensus 114 vWdlnk~~rnk-~l~~f~EH~Rs-~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~---~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 114 VWDLNKSIRNK-LLTVFNEHERS-ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTF---RSNSESIRDVKFSPG 187 (839)
T ss_pred EEecCccccch-hhhHhhhhccc-eeeeeeccCCccEEEecCCCceEEEEeeecccc-cccc---cccchhhhceeeccC
Confidence 999988 45 66778888777 999988888999999999999999999998873 3333 345689999999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc---eEEEEeccCCc
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPS 1314 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~---~l~~i~~~h~~ 1314 (1348)
.+.+|+++...|.+++||+|....+...+.+|.++|.|+.|||++.+|||||.|++|+|||.++. .+.++..
T Consensus 188 -~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---- 262 (839)
T KOG0269|consen 188 -YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---- 262 (839)
T ss_pred -CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee----
Confidence 79999999999999999999988899999999999999999999999999999999999997643 3334432
Q ss_pred ccccccCCeEEEEEeCCCC-EEEEEEC--CCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQV-LLAAGSA--DACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~-~Latgs~--Dg~I~IWd 1348 (1348)
..+|.++.|-|... .||+++. |..|+|||
T Consensus 263 -----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 263 -----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred -----cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 47899999999885 4677665 88999997
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=202.86 Aligned_cols=250 Identities=19% Similarity=0.350 Sum_probs=194.4
Q ss_pred eEEEEEEee-----CCCCEEEEEeCCCeEEEEeccCCCCc-eeEE-------------eeeecccCCCCcccccceEEEE
Q 000697 1083 ISKLCLVNE-----LDVSLLLVASCNGNIRIWKDYDQKDK-QKLV-------------TAFSSIQGHKPGVRCSNVVVDW 1143 (1348)
Q Consensus 1083 ItsL~f~ns-----~d~~~L~tgs~DG~IrIWdl~~~~~~-~~lv-------------s~~~~l~~h~~~V~si~~~v~w 1143 (1348)
..|++|.+. ..|++++.|+.|..|.|||+.--+.- +.+. ..-..-.+|+..|.. +.|
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~----Ls~ 251 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA----LSW 251 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH----HHh
Confidence 357777643 24679999999999999998431100 0000 000112356666666 677
Q ss_pred ecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC
Q 000697 1144 QQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1144 s~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
+..-. .|++||.|.+|++||+.+++ +..++..| +..|.++.|++..+..+++|+.||+|.++|.|.....-..|+..
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCC-cceehhhc-CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence 66544 56666899999999999999 88888855 45599999999999999999999999999999655455555333
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
+.|-.++|.|. ....+++++.||+|+-+|+|..++++.++++|.++|++++++...+ ++++++.|+.|++|++.
T Consensus 330 ----g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 330 ----GEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ----cceEEEEecCC-CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 78999999998 7788999999999999999998899999999999999999998765 78999999999999987
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
+..-..... |.- ..+...|+++.|+- -+||.||..+.++|||
T Consensus 405 ~~~~~~v~~-~~~----~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 405 VDSPKSVKE-HSF----KLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred CCCCccccc-ccc----cccceeecccCCCcceEEEecCccceEEEee
Confidence 766555555 442 23457888888887 4678888888999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=191.83 Aligned_cols=259 Identities=15% Similarity=0.265 Sum_probs=199.8
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
.+..|..-|..+...-.|+.|||++.|++|+|+..+++ +.+.++.+|. ++|..++|.+..-|++|++++.||.|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceE
Confidence 45667778888888889999999999999999998764 5788899999 99999999766689999999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC--CCeEEEEECCCeEEEEECCCC-ceeeeee-cCCCCCCe
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKE-QQMVNPI-PSSSDCSI 1182 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~--~~~Ll~gg~Dg~IrVWDl~t~-~~~v~~l-~~~~~~~V 1182 (1348)
.||+-.. +..... .....|...|++ ++|-|. +-.|++++.||.|.|.+.+.. .-....+ ..|.- .|
T Consensus 83 IiWke~~--g~w~k~---~e~~~h~~SVNs----V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-Gv 152 (299)
T KOG1332|consen 83 IIWKEEN--GRWTKA---YEHAAHSASVNS----VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GV 152 (299)
T ss_pred EEEecCC--Cchhhh---hhhhhhccccee----ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-cc
Confidence 9999765 332222 346778899988 666554 557888899999999988765 2123333 34444 49
Q ss_pred EEEEEecCC--C-----------CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEE
Q 000697 1183 SALTASQVH--G-----------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSAS 1247 (1348)
Q Consensus 1183 tsL~~~s~d--g-----------~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs 1247 (1348)
+++++.+.. | ..|++|+.|..|+||+..... - ..-+.+.+|.++|+.++|.|. .....|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-w-~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-W-KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-h-hhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999554431 2 569999999999999998763 1 111246789999999999997 1235899999
Q ss_pred CCCcEEEEEcCCCCcc--eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCc
Q 000697 1248 QAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGE 1303 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~--v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~ 1303 (1348)
.||+|.||..+...++ ...++.....+..+.|+..|.+|+.++.|+.|.+|. .+|+
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9999999988743222 222333467899999999999999999999999998 4454
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=203.42 Aligned_cols=244 Identities=17% Similarity=0.294 Sum_probs=192.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|-..|.+++.++||++||+|+.|..|.||+.++.+.++.|.+|. +.|.+++| ......|++++.|+.|++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~f--r~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAF--RKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc---cceeeeee--ecCccceeeeecCCceEEEeh
Confidence 3667889999999999999999999999999999999999999999 99999999 667788999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ...+ .++.+|...|.++ .-...+..+-+|+.|+++++|++..+. ...+.++.++ +.|+++. +
T Consensus 274 ~~----~s~v---etlyGHqd~v~~I----daL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~s-idcv~~I--n 337 (479)
T KOG0299|consen 274 DQ----LSYV---ETLYGHQDGVLGI----DALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGS-IDCVAFI--N 337 (479)
T ss_pred hH----hHHH---HHHhCCccceeee----chhcccceEEeccccceeEEEeccccc--eeeeeCCCCC-eeeEEEe--c
Confidence 54 2233 5678999998883 333445556666799999999996555 4445565555 8888666 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCC--------CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1261 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~--------~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-- 1261 (1348)
...|++|+.||.|.+|++-+.+++...-..|. ++..||++++..|. .+.+++|+.+|.|++|-+..+-
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEecCCccc
Confidence 67899999999999999998874433222221 12349999999998 9999999999999999998763
Q ss_pred -cceEEEecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEE
Q 000697 1262 -DAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFS 1299 (1348)
Q Consensus 1262 -~~v~t~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd 1299 (1348)
.++..+. -.+.|++++|+++|+.+++| +....+--|-
T Consensus 416 i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 416 INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 3444444 46789999999999965555 5554444443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=178.45 Aligned_cols=250 Identities=19% Similarity=0.355 Sum_probs=195.8
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--cE---EEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEe-
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TL---LNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS- 1101 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~--~~---l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs- 1101 (1348)
-+..|.+.|.|.+|+|+|.+|++|+.|.+|++.-+... .. --.|..|. +.|..++|...+ .+.+|++++
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---gtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---GTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC---CceeeeEEecCCCcCceEEEecCC
Confidence 34556789999999999999999999999999865432 21 23477788 899999997433 344566554
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC----
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---- 1177 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~---- 1177 (1348)
.|..|.+-|... +. .++.+.+|++.|.. ...|+ +-.+++|+.|.+|++||++-.. ++.++...
T Consensus 161 gdc~iy~tdc~~--g~-----~~~a~sghtghila---lyswn--~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 161 GDCKIYITDCGR--GQ-----GFHALSGHTGHILA---LYSWN--GAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDG 227 (350)
T ss_pred CcceEEEeecCC--CC-----cceeecCCcccEEE---EEEec--CcEEEccCCCceEEEEeeeccc-eeeeccCcccCC
Confidence 344444445433 32 23568899988876 35675 6778888999999999999988 88877532
Q ss_pred --CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1178 --SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1178 --~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
..+.|.++ +..|.|+++++|-.|.+..+||+|.+. +++.+. .|...|.++.|+|. ..++++|+.|..|++-
T Consensus 228 glessavaav-~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~---phsadir~vrfsp~--a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 228 GLESSAVAAV-AVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFH---PHSADIRCVRFSPG--AHYLLTCSYDMKIKLT 300 (350)
T ss_pred CcccceeEEE-EECCCcceeeeccCCCceEEEEeeCCc-eeeeeC---CCccceeEEEeCCC--ceEEEEecccceEEEe
Confidence 22458888 678999999999999999999999998 566554 45699999999999 9999999999999999
Q ss_pred EcCCC---CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNH---KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~---~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|+... .-++.....|+..+-.+.|||..--+++.+.|+++.+|-+.+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 98732 134556667999999999999999999999999999997643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=195.24 Aligned_cols=225 Identities=19% Similarity=0.270 Sum_probs=185.1
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC-----------CCceeEEeeeecccCCCCcccccce
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-----------KDKQKLVTAFSSIQGHKPGVRCSNV 1139 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-----------~~~~~lvs~~~~l~~h~~~V~si~~ 1139 (1348)
..+..|. +.+.+-+| ++||.+++||+.|..|+|.|++.- .+.....--++++.+|...|++
T Consensus 106 ~ylt~HK---~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~--- 177 (430)
T KOG0640|consen 106 KYLTSHK---SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND--- 177 (430)
T ss_pred EEEeecc---cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc---
Confidence 3456677 78999999 899999999999999999998620 1111111224788899999999
Q ss_pred EEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1140 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1140 ~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
+.|+|....|++|+.|++|++||..+.. ..+.++.- ...+|.++ .+.|.|.++++|.....+++||+.+-++.+..
T Consensus 178 -l~FHPre~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsi-SfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 178 -LDFHPRETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSI-SFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred -eeecchhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeE-eecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999999998765 33333211 12359999 77899999999999999999999998855544
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCC-CCeEEEEEeCCCCEEEEEeCCCcEE
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHR-GSLSALAVHRHAPIIASGSAKQLIK 1296 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~-~~VtsLa~spdg~~LasgS~Dg~I~ 1296 (1348)
. ...+|.+.|+++.+++. |+..++|+.||.|++||--.+ .++.++. +|. ..|.+..|..+|+++.+.+.|..|+
T Consensus 255 n-Pd~qht~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 255 N-PDDQHTGAITQVRYSST--GSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred C-cccccccceeEEEecCC--ccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 4 66789999999999999 999999999999999998877 7888775 464 4799999999999999999999999
Q ss_pred EEE-cCCceEEEEec
Q 000697 1297 VFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1297 Vwd-~~g~~l~~i~~ 1310 (1348)
+|. -+|..+....+
T Consensus 331 LWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTG 345 (430)
T ss_pred eeeecCCceEEEEec
Confidence 999 56888887766
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=211.09 Aligned_cols=276 Identities=13% Similarity=0.187 Sum_probs=214.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.|..+-+.++|.|+|.+|++++.||.|++|+..+. +.-.++..+. ..|.+++. ++++|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---~~v~~ia~----~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG---ELVSSIAC----YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC---ceeEEEee----cccceEEeeccceEEEeeC
Confidence 46678999999999999999999999999987655 4444444344 57777776 6679999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. +...-+ +...+.+++. ++++.+|..+++||+|-.|++-+..... ....+.+|... |.++ .++|.
T Consensus 84 ps--~~~~~i-----L~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~ap-Vl~l-~~~p~ 149 (933)
T KOG1274|consen 84 PS--GEEDTI-----LARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAP-VLQL-SYDPK 149 (933)
T ss_pred CC--CCccce-----eeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCc-eeee-eEcCC
Confidence 66 322211 2334455666 8899999999999999999999999888 78888888665 9999 67889
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-----CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-----QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-----~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+++|++.+.||.|++||+.++. +...+.... .....+..++|+|+ +..++....|+.|++|+...+ +....
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk--~g~la~~~~d~~Vkvy~r~~w-e~~f~ 225 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPK--GGTLAVPPVDNTVKVYSRKGW-ELQFK 225 (933)
T ss_pred CCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCC--CCeEEeeccCCeEEEEccCCc-eehee
Confidence 9999999999999999999876 333332211 11345778999999 777888888999999999887 56555
Q ss_pred Eec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1267 IDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1267 ~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
+.. +...++.++|+|+|+|||+++.||.|.|||.+.... |. ....|.+++|.|+...+-.-...|..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~-----~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE-----FKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc-----ccceeEEEecCCCCCeeEEEeecccc
Confidence 553 344599999999999999999999999999765221 22 23679999999998766544444433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=187.38 Aligned_cols=292 Identities=14% Similarity=0.230 Sum_probs=216.6
Q ss_pred cccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCc----------EEEEe-----eCCCCCCCCeEEEEEEee
Q 000697 1028 ACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT----------LLNSF-----DNHDFPDKGISKLCLVNE 1091 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t~~----------~l~~~-----~~h~~~~~~ItsL~f~ns 1091 (1348)
+++...|++.|+++.+.+ .|+++++|+.||.|.|||+++.. .+..+ .+|. -.|+++.|.|
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk---y~iss~~WyP- 111 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK---YAISSAIWYP- 111 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce---eeeeeeEEee-
Confidence 345667889999999988 56799999999999999998532 11111 2344 6899999975
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC---CeEEEEECCCeEEEEECCCCc
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS---GYLYASGEVSSIMLWDLEKEQ 1168 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~---~~Ll~gg~Dg~IrVWDl~t~~ 1168 (1348)
.|..++.+++-|.+++|||..+.+.-.. -...+.|.+ -+|+|-. ..+++|..+-.|++.|+.++.
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~--------F~me~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVD--------FKMEGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEE--------eecCceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 6778999999999999999966221111 123344444 4555532 345566688899999999999
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-----------CCCCCCCCeEEEEEecC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-----------PHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-----------~~~~h~~~I~sl~~sp~ 1237 (1348)
+-.++.+|.+. |.++.|.+...-.|++|+.||.|++||+|....+...+. +...|.+.|.+++|..+
T Consensus 180 -~sH~LsGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 180 -FSHTLSGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -ceeeeccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 99999999887 999977666667888999999999999996533333332 23457889999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCcceEEEec--CCCCeEEEEE---eCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAV---HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1311 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~--h~~~VtsLa~---spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~ 1311 (1348)
+.++++++.|..+++|+..++...+..+-. |.. -+.+++ +-+...++---.++.+.+++ .+|..+..+..
T Consensus 258 --~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~- 333 (397)
T KOG4283|consen 258 --ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST- 333 (397)
T ss_pred --chhhhhccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec-
Confidence 999999999999999999887543333221 111 112222 22333444444568899999 78999999988
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|- ..|.|.++-|+-+.+.+|..|+.|..|.
T Consensus 334 h~-------k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 334 HL-------KRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cc-------ceeeEEeecCchhhhhccccCCcccccc
Confidence 53 6899999999999999999999998883
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=201.71 Aligned_cols=291 Identities=18% Similarity=0.222 Sum_probs=225.0
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
++-.-...+|.+|+|+.+.+.||++-.+|+|.||++..+-.. ..+.++ .+..|.+++|. ++..|++.+.+|.|.
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~---e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWA---EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEc---cCCeEEeecCCceEE
Confidence 333344689999999999999999999999999999876433 334443 45799999993 788999999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCCCCCeEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALT 1186 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-~~~~~~~VtsL~ 1186 (1348)
-||+.+ .++.. .+....+.+++ ++.++.+..+++|++||.+..++...+. ..... -....+.|.++
T Consensus 94 EwDl~~--lk~~~-----~~d~~gg~IWs----iai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLsl- 160 (691)
T KOG2048|consen 94 EWDLHT--LKQKY-----NIDSNGGAIWS----IAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSL- 160 (691)
T ss_pred EEeccc--CceeE-----EecCCCcceeE----EEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEE-
Confidence 999977 44433 25556677887 8888999999999999988888887776 43322 23334569999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeE-eec--CC-CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STR--PH-TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~-~~~--~~-~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~ 1262 (1348)
.+++++..+++|+.||.|++||..++..... +++ .. ++...-|.++.+-. ...|++|...|+|++||...+ .
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr---d~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR---DSTIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee---cCcEEEecCCceEEEEcccCc-c
Confidence 7788999999999999999999998874331 111 11 11234567777764 468999999999999999998 8
Q ss_pred ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1263 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.++.+..|.+.|.+++..+++..+.+++.|+.|.-|..++..-. +. .......|...|.+++..++ .|++|+.|.
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-wv--~~~~r~~h~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-WV--INSRRDLHAHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-ee--eeccccCCcccceeeeeecc--eEEecceee
Confidence 99999999999999999999999999999999998885543221 11 01122345578999999877 899999998
Q ss_pred eEEE
Q 000697 1343 CVSI 1346 (1348)
Q Consensus 1343 ~I~I 1346 (1348)
++.+
T Consensus 312 ~l~i 315 (691)
T KOG2048|consen 312 TLAI 315 (691)
T ss_pred EEEE
Confidence 8765
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=208.09 Aligned_cols=274 Identities=15% Similarity=0.264 Sum_probs=213.0
Q ss_pred EEEEEECCCcEEEEECCCC---cEEEE--e---------eC------CC--------------CCCCCeEEEEEEeeCCC
Q 000697 1049 IVVAADENERIKIWNYEED---TLLNS--F---------DN------HD--------------FPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1049 ~Latgs~dg~I~VWd~~t~---~~l~~--~---------~~------h~--------------~~~~~ItsL~f~ns~d~ 1094 (1348)
.++|++.||+||+||++.+ ...+. + .. |. .+.-++.+++. ++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--Sp~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--SPDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--CCCc
Confidence 5889999999999999853 11110 0 00 00 11247899999 8999
Q ss_pred CEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC---CCeEEEEECCCeEEEEECCCCceee
Q 000697 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1095 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~---~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
++|++|..-|+++||++..... . -.+..|...|.+ +.|+.. .+.|++++.|+.|.|||+..+-.++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~----~---~~~eAHesEilc----LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEY----T---CFMEAHESEILC----LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceecccCccCceEEEEehhhhh----h---hheecccceeEE----EeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9999999999999999965211 1 235789988887 666532 4567778999999999998876478
Q ss_pred eeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1172 NPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
+++.+|+.+ |+++.+.-.++ ..+++++.|..|.+ +..........+. .+.-.+..+..+++.|. .+++++++.
T Consensus 541 qtld~HSss-ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQ 616 (1080)
T KOG1408|consen 541 QTLDGHSSS-ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQ 616 (1080)
T ss_pred hhhcccccc-eeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCC--cceEEEEec
Confidence 888888877 99996654332 56788888988754 3332111122221 11222467899999999 999999999
Q ss_pred CCcEEEEEcCCCCcceEEEec---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeE
Q 000697 1249 AGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVN 1324 (1348)
Q Consensus 1249 DG~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vt 1324 (1348)
|..|+|||+.++ +.++.|++ |++..-.+...|.|-|+|+...|+++.++| .+|+.+.++.+ |. ..|+
T Consensus 617 Drnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-Hs-------E~VT 687 (1080)
T KOG1408|consen 617 DRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HS-------EAVT 687 (1080)
T ss_pred ccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cc-------hhee
Confidence 999999999998 78888875 667899999999999999999999999999 78999999888 65 7899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1325 CLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1325 slafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.|.+|-+.|++.+.||.|.||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE
Confidence 999999999999999999999993
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=190.22 Aligned_cols=292 Identities=12% Similarity=0.166 Sum_probs=203.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~IrIW 1109 (1348)
.|+..|++++|+.||+.|++++.|++|+||++++-+. -+.++..- +.+-.+.+.| .+|-.-+++ .-...++++|
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~F--apDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVF--APDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEE--CCCcceEEEEEccCCEEEEE
Confidence 4678999999999999999999999999999875311 11111111 1235688999 667665444 4455689999
Q ss_pred eccCCC-CceeEE-eeee---cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1110 KDYDQK-DKQKLV-TAFS---SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1110 dl~~~~-~~~~lv-s~~~---~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
.+...+ |..... ..|. .-..|.-.+..++ .-..+.+|++++.|..|.+||++ ++ .+..+...... +.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG----iA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~--n~ 232 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG----IAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSS--NY 232 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEe----ecCCceEEEEecCCCcEEEEecC-Cc-eeeeecccccc--cc
Confidence 885421 221111 0011 1112333333322 22456788888999999999998 66 78888765544 33
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC-----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTP-----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~-----~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
.+..+|+|+++++++..-.|++|.+--. +...+.+ .+.||.+.|..++|+++ ...+++.|.||++++||+.-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCC--cceeEEEecCCcEEEeeccc
Confidence 3468999999999999999999987522 2234444 56799999999999999 99999999999999999862
Q ss_pred CC------cceEEEe----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEE
Q 000697 1260 HK------DAYLTID----AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTF 1328 (1348)
Q Consensus 1260 ~~------~~v~t~~----~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslaf 1328 (1348)
.. ..+++.. ...+.-..+..+|.|..||.... ..+++|. -+|+....++. .|.+.|++++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~-------~h~~~Is~is~ 381 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELED-------IHSTTISSISY 381 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHH-------hhcCceeeEEe
Confidence 11 2222221 12334458999999999988653 5799998 45666555544 34589999999
Q ss_pred eCCCCEEEEEECCCeEEEc
Q 000697 1329 HPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1329 spdg~~Latgs~Dg~I~IW 1347 (1348)
+++|++++|++ |..+++.
T Consensus 382 ~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred cCCCcEEeeec-ceeeeee
Confidence 99999999997 6777764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=205.05 Aligned_cols=255 Identities=14% Similarity=0.189 Sum_probs=192.4
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
.+++|. ..|+++++ .+.|..|++||-|..|++||...-....+ .++.+. .....|++ +.|++.++.|
T Consensus 162 ~l~hgt---k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~---~fr~l~P~E~h~i~s----l~ys~Tg~~i 229 (641)
T KOG0772|consen 162 QLKHGT---KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMR---SFRQLQPCETHQINS----LQYSVTGDQI 229 (641)
T ss_pred eccCCc---eEEEEeee--cCCCceeeeccccceEEEEecccccccch---hhhccCcccccccce----eeecCCCCeE
Confidence 466677 78999999 88999999999999999999965222221 123333 23344555 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeec------------CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIP------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~------------~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
++.+.....+|+|....+ .+...+ +|.. .++|.+|.+...+.|++++.||++|+||+...+....+
T Consensus 230 Lvvsg~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred EEEecCcceeEEccCCce-eeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 999999999999977655 333322 3433 48888677667789999999999999999976644444
Q ss_pred ec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--cceEEEecCCC--CeEEEEEeCCCCEEEEEeCC
Q 000697 1219 TR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRG--SLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1219 ~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~~v~t~~~h~~--~VtsLa~spdg~~LasgS~D 1292 (1348)
++ ...+..-.++.++|+|+ |+.|++|+.||.|.+||.+... .....-.+|.. .|+|+.|+++|++|++-+.|
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred EeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 43 23345567999999999 9999999999999999986542 23344457876 89999999999999999999
Q ss_pred CcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1293 QLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1293 g~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
+++++||++ .+.+....+ -. ...+-+.++|+|+.++|+||.+ -|.+.+||
T Consensus 386 ~tLKvWDLrq~kkpL~~~tg-L~-----t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTG-LP-----TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CceeeeeccccccchhhhcC-CC-----ccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 999999975 345544443 22 2245678999999999999975 34566654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=189.81 Aligned_cols=260 Identities=13% Similarity=0.224 Sum_probs=203.1
Q ss_pred EEEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC
Q 000697 1049 IVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1348)
Q Consensus 1049 ~Latgs~dg~I~VWd~~t~------------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~ 1116 (1348)
.+++|++...|.=+++.-. ..+..++.|. +.|++++. ++.++++||.|-+|+|||+.....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~---~sitavAV----s~~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA---GSITALAV----SGPYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccc---cceeEEEe----cceeEeccCCCCcEEEEeccchhh
Confidence 3566777666666654311 2245677888 89999999 789999999999999999966222
Q ss_pred ceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1117 ~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
- ..+-.|.+.|++ +.|.+... .|++|++||.|.+|+...-. ++..+++|... |+.+ ..+|.+++
T Consensus 76 l-------g~ll~Hagsita----L~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~-Vt~l-siHPS~KL 141 (362)
T KOG0294|consen 76 L-------GILLSHAGSITA----LKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQ-VTDL-SIHPSGKL 141 (362)
T ss_pred h-------cceeccccceEE----EEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccccc-ccee-EecCCCce
Confidence 1 345678888888 77776654 89999999999999999998 99999999888 9999 77889999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
-++.+.|+.++.||+-.++.. ... ... ..-+.+.|+|. |.+++.+..+ .|-+|.+.+. .....+.. ...+
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a-~v~-~L~---~~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~-~~r~ 211 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVA-FVL-NLK---NKATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-SVFREIEN-PKRI 211 (362)
T ss_pred EEEEcCCceeeeehhhcCccc-eee-ccC---CcceeeEEcCC--CCEEEEEecc-EEEEEecccH-hHhhhhhc-cccc
Confidence 999999999999999887632 222 221 33445999998 8888888776 5899998865 34444432 2446
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEE--eCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF--HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslaf--spdg~~Latgs~Dg~I~IWd 1348 (1348)
.++.|- ++..+++|+.|+.|++||.+ +..+..+.. |. .+|-++.+ .|++.+|+|+|+||.|+|||
T Consensus 212 l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~-------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 212 LCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-HE-------NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeeec-CCceEEEecCCceEEEeccCCCccceeeec-ch-------hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 676665 56789999999999999965 777777877 66 78888885 56788999999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=203.81 Aligned_cols=240 Identities=17% Similarity=0.219 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
++.|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+++.| +.||.+|+|||.||.|.+|.+.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---cceeEEEE--eCCCcEEEecCCCccEEEEEEEee
Confidence 4789999999999999999999999999999999999999999 89999999 789999999999999999998431
Q ss_pred --CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1115 --KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1115 --~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
......+.++..+.+|.-+|+++ .+.+.+.+.++++++.|.++++||+..+. .+.++.. ...+.++ ..+|.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl--~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~f--p~si~av-~lDpae 229 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDL--QIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITF--PSSIKAV-ALDPAE 229 (476)
T ss_pred cccccCCCccceeeeccCcceeEEE--EecCCCccceEEEecCCceEEEEEeccce-eeEEEec--CCcceeE-EEcccc
Confidence 01111233456788999999883 23445567899999999999999999998 8777765 3348999 678899
Q ss_pred CEEEEEeCCCeEEEEECCCCC------------eeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPD------------MLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~------------~~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
..+++|+.+|.|.+.++.... .....++.+.||.+ .|+|++++-+ |..|++|+.||.|+|||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEecc
Confidence 999999999999998876432 11112234557777 9999999998 9999999999999999999
Q ss_pred CCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
+. ++++++....++|+.+.+.|-.+-...
T Consensus 308 S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SK-QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hH-HHHHHHhhhccccceeEeeccccceec
Confidence 87 788888877899999999776554443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=187.66 Aligned_cols=252 Identities=16% Similarity=0.215 Sum_probs=189.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec--CCCeEEEEECCCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QSGYLYASGEVSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~--~~~~Ll~gg~Dg~ 1158 (1348)
+.|.++.. .-.|..|+|++.|++|+|+.+..+.. ..+. ..+.+|.++|.. ++|-. -|..|++++.||.
T Consensus 12 D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~-s~ll---~~L~Gh~GPVwq----v~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 12 DMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ-SKLL---AELTGHSGPVWK----VAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC-ceee---eEecCCCCCeeE----EeecccccCcEeeEeecCce
Confidence 56766666 55899999999999999999977333 2333 568999999999 88854 5777888899999
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec
Q 000697 1159 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236 (1348)
Q Consensus 1159 IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp 1236 (1348)
|.||.-+.++ ........|..+ |+++++-+. -|-.|++++.||.|.|.+.+... .-...+....|.-.|++++|.|
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~S-VNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSAS-VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred EEEEecCCCchhhhhhhhhhccc-ceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecC
Confidence 9999977764 123445566665 999954333 25688999999999999998762 1122223446789999999998
Q ss_pred CC-CC-----------CEEEEEECCCcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEE
Q 000697 1237 GL-DP-----------AKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHA----PIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1237 ~~-~g-----------~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg----~~LasgS~Dg~I~Vwd 1299 (1348)
.. .| +.|++|+.|..|+||+..+.. ..-.++.+|.+.|+.++|.|.- ..||++|.||+|.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 61 11 569999999999999998742 3345689999999999999963 3899999999999998
Q ss_pred cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.+ ....+. ..+..-...+..++|+..|..|+.++.|+.|.+|.
T Consensus 240 ~~~e-~e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 240 KDEE-YEPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ecCc-cCcccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 5422 111110 00001236799999999999999999999999993
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=187.54 Aligned_cols=244 Identities=18% Similarity=0.265 Sum_probs=187.4
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC
Q 000697 1076 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155 (1348)
Q Consensus 1076 h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~ 1155 (1348)
.+++...|++|.| ++.++.|++++.||++++||+....-+ ..-.|..++.+ ++|. +...+++|+-
T Consensus 9 ~npP~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~----c~F~-d~~~~~~G~~ 73 (323)
T KOG1036|consen 9 ENPPEDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLD----CAFA-DESTIVTGGL 73 (323)
T ss_pred CCCChhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceee----eecc-CCceEEEecc
Confidence 3455689999999 577888888999999999999763111 22346777777 7776 4678999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1156 Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
||.|+.+|+.++. ...+..|.. +|.|| ......+.+++|+-|++|++||.|... .+-.+ .....|.++...
T Consensus 74 dg~vr~~Dln~~~--~~~igth~~-~i~ci-~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~----d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN--EDQIGTHDE-GIRCI-EYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF----DQGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCc--ceeeccCCC-ceEEE-EeeccCCeEEEcccCccEEEEeccccc-ccccc----ccCceEEEEecc
Confidence 9999999999987 445555555 49999 455677899999999999999999744 33222 223578888775
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-----ceEEEEe
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIR 1309 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-----~~l~~i~ 1309 (1348)
++.|++|+.|..|.+||+|+...+.+.-. .-+-.++|+++-|++.-++++|-||+|.+=.++. +....|+
T Consensus 145 ----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 145 ----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred ----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 77999999999999999998754442221 2345789999999999999999999998765432 3455677
Q ss_pred ccCCcccc--cccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1310 YHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1310 ~~h~~f~~--~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
. |..-.. .-..+|++++|||-...||||+.||.|.+||
T Consensus 221 C-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 221 C-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred e-eecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 7 653222 2335899999999999999999999999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-18 Score=201.08 Aligned_cols=305 Identities=17% Similarity=0.242 Sum_probs=227.4
Q ss_pred CcccccccCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000697 1025 NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1025 ~~i~~Wd~~~~----------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~ 1094 (1348)
+....|+.+.+ .+|+++.=+|--+.+|+|..+|+|.|+|++.++.+.+|+... ++|+++.| ..||
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~---g~VtslSF--rtDG 256 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW---GRVTSLSF--RTDG 256 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc---cceeEEEe--ccCC
Confidence 44555666543 789999999999999999999999999999999999999876 79999999 6677
Q ss_pred C-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eee
Q 000697 1095 S-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMV 1171 (1348)
Q Consensus 1095 ~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v 1171 (1348)
. .+++|+..|.+.+||++. .+... .....|.+.+.. ..|.+....+++++.|+.+++|=.+++. ..+
T Consensus 257 ~p~las~~~~G~m~~wDLe~--kkl~~----v~~nah~~sv~~----~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEK--KKLIN----VTRNAHYGSVTG----ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred CeeEEeccCCceEEEEEcCC--Ceeee----eeeccccCCccc----ceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 6 556666779999999965 22211 234567777777 6777888888899999998888555333 123
Q ss_pred eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCC----------------------------------------
Q 000697 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT---------------------------------------- 1211 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~---------------------------------------- 1211 (1348)
...+.++..+-.++.+....|..+.+++.|++.+.|++..
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 3344444555777767666777777777777777666531
Q ss_pred -------------------------CCeeeEeecC--CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1212 -------------------------PDMLVCSTRP--HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1212 -------------------------~~~~v~~~~~--~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
...-...++. ++.-...+++++.++. |++.+.|+..|.|-+|++.++ -..
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C--GNF~~IG~S~G~Id~fNmQSG-i~r 483 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC--GNFVFIGYSKGTIDRFNMQSG-IHR 483 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc--CceEEEeccCCeEEEEEcccC-eee
Confidence 1100000000 0001246889999998 999999999999999999988 666
Q ss_pred EEE---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce-EEE---------EeccCCc----------c------
Q 000697 1265 LTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGT---------IRYHHPS----------F------ 1315 (1348)
Q Consensus 1265 ~t~---~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~-l~~---------i~~~h~~----------f------ 1315 (1348)
.++ ..|.++|++++...-++.+++++.+|.+++||..++. +.. +.+ |.. |
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~-hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVY-HRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeee-eehhhhhhhhcCceeEEEEE
Confidence 677 5899999999999999999999999999999965433 111 222 110 0
Q ss_pred ---------cccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1316 ---------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1316 ---------~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+|.+.|++++|||||++|++++.|++|++||
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 225889999999999999999999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-17 Score=188.10 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=190.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L-~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
+..+++++.|+.|++||..+++.+..+..+. .+.++.| ++++..+ ++++.++.|++||..+ ++. . .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~--~~~--~---~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITL--SKDGKLLYVCASDSDTIQVIDLAT--GEV--I---G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEE--CCCCCEEEEEECCCCeEEEEECCC--CcE--E---E
Confidence 3578899999999999999999988888665 4678899 7888876 5667889999999865 322 2 1
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-e
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-S 1203 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-~ 1203 (1348)
.+..+.. +.. ++|+++++.+++++ .++.|++||+++.+ .+..+..+. .+.++ .++++++.++++..++ .
T Consensus 68 ~~~~~~~-~~~----~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~-~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 68 TLPSGPD-PEL----FALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGM-AVSPDGKIVVNTSETTNM 138 (300)
T ss_pred eccCCCC-ccE----EEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceE-EECCCCCEEEEEecCCCe
Confidence 2222222 223 78999999887764 68999999999887 777765432 25677 6788999999988775 5
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE-EEECCCcEEEEEcCCCCcceEEEecCC-----C--CeE
Q 000697 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAYLTIDAHR-----G--SLS 1275 (1348)
Q Consensus 1204 VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~La-Sgs~DG~I~IWDlr~~~~~v~t~~~h~-----~--~Vt 1275 (1348)
+.+||.++.+. ...... ...+.++.|+|+ +..++ ++..+|.|++||++++ +.+..+..+. . ...
T Consensus 139 ~~~~d~~~~~~-~~~~~~----~~~~~~~~~s~d--g~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 139 AHFIDTKTYEI-VDNVLV----DQRPRFAEFTAD--GKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred EEEEeCCCCeE-EEEEEc----CCCccEEEECCC--CCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCcc
Confidence 67889987763 322211 134678999999 77775 4456899999999987 5655554321 1 234
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE-CCCeEEEcC
Q 000697 1276 ALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIHS 1348 (1348)
Q Consensus 1276 sLa~spdg~~Las-gS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs-~Dg~I~IWd 1348 (1348)
.++|+|+++++++ .+.++.|.+||.. ++.+..+. +. ..+.+++|+|++.+|++++ .+|.|.+||
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC-------CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 6889999997544 4556789999964 44444433 22 4688999999999998864 589999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=195.92 Aligned_cols=290 Identities=18% Similarity=0.261 Sum_probs=213.2
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1034 FEKGTKTALLQPFSP--IVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~--~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
+..+|++++|||..+ ++|+|+..|.|-+||+.+. ..+..|..|. .+|++|.|.+ .+...+++.|.||+|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---~~Vs~l~F~P-~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---GPVSGLKFSP-ANTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---ccccceEecC-CChhheeeeccCceee
Confidence 457899999999776 8889999999999999522 3455677777 8999999953 4667899999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
.-|++. ...+.+ -.+........ .++|+.+...++.++.-|...+||.++.......+..|.. .|++|++
T Consensus 261 ~~D~~~--~i~e~v---~s~~~d~~~fs----~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~ 330 (498)
T KOG4328|consen 261 LQDFEG--NISEEV---LSLDTDNIWFS----SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVAL 330 (498)
T ss_pred eeeecc--hhhHHH---hhcCccceeee----eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeec
Confidence 999966 222222 11111112222 3788888899999988889999999987723555666666 5999977
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC---CCCcc
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDA 1263 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~-~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr---~~~~~ 1263 (1348)
.+....+|++++.|++++|||+|.-..... .+ ....|...|.+..|+|. +|. |++.+.|..|+|||.. ....+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs-~gt-l~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPS-GGT-LLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCC-CCc-eEeeccCCceEEeecccccccCCc
Confidence 777888999999999999999995432111 12 22367899999999999 455 9999999999999984 22255
Q ss_pred eEEEecCCC------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce-EEEEeccCCcccccccCCeEE-EEEeCCCCEE
Q 000697 1264 YLTIDAHRG------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNC-LTFHPYQVLL 1335 (1348)
Q Consensus 1264 v~t~~~h~~------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~-l~~i~~~h~~f~~~~~~~Vts-lafspdg~~L 1335 (1348)
..++. |.. ......|+|+..++++|-.-..|-|+|-+|+. +..+.. . ....|.+ ..|||.+..+
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P------~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-P------ESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-c------cccccccceeecccccce
Confidence 55555 322 23456899999999999999999999966655 555433 1 1234444 4799999866
Q ss_pred EEEEC-CCeEEEcC
Q 000697 1336 AAGSA-DACVSIHS 1348 (1348)
Q Consensus 1336 atgs~-Dg~I~IWd 1348 (1348)
++|+. .|.|.||.
T Consensus 480 ~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 480 AAGGNSSGKIYVFT 493 (498)
T ss_pred eccCCccceEEEEe
Confidence 66554 78999883
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=213.91 Aligned_cols=247 Identities=15% Similarity=0.253 Sum_probs=201.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------C-----------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------D-----------TLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-------~-----------~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|.+.|+|+.|+|||.+||+|++|+.|.||+... | +.+..+.+|. ..|..++| +|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---~DV~Dv~W--sp~ 140 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---SDVLDVNW--SPD 140 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---Cccceecc--CCC
Confidence 35678999999999999999999999999998872 1 3567788999 89999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
+.+|++++.|++|.||+..+ .+.+ +.+.+|...|.+ +.|.|-|.++++-++|++|+||++..-. +.+.
T Consensus 141 ~~~lvS~s~DnsViiwn~~t----F~~~---~vl~~H~s~VKG----vs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~ 208 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKT----FELL---KVLRGHQSLVKG----VSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKS 208 (942)
T ss_pred ccEEEEecccceEEEEcccc----ceee---eeeecccccccc----eEECCccCeeeeecCCceEEEEEcccce-eeEe
Confidence 99999999999999999866 2333 568999999999 9999999999999999999999987766 6666
Q ss_pred ecCCCC-----CCeEEEEEecCCCCEEEEEeC----CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC------C
Q 000697 1174 IPSSSD-----CSISALTASQVHGGQLAAGFV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------L 1238 (1348)
Q Consensus 1174 l~~~~~-----~~VtsL~~~s~dg~~LvsGs~----DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~------~ 1238 (1348)
+..+.+ ..+..+ .|+|+|++|++... -.++.|.+..+.+. -. .+-||.+++.++.|+|. .
T Consensus 209 It~pf~~~~~~T~f~Rl-SWSPDG~~las~nA~n~~~~~~~IieR~tWk~-~~---~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRL-SWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-DK---DLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eccchhhCCCcceeeec-ccCCCcCeecchhhccCCcceeEEEecCCcee-ee---eeecCCCceEEEEeChHHhccccc
Confidence 665433 235667 68999999998643 34688888766552 22 34488899999999986 0
Q ss_pred -----CCC----EEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1239 -----DPA----KIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1239 -----~g~----~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
..+ .+++|+.|+.|.||..... +++..+. -....|..++|+|||..|.++|.||+|.+..++
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 121 7899999999999999766 4544333 346789999999999999999999999999975
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-20 Score=218.67 Aligned_cols=257 Identities=18% Similarity=0.363 Sum_probs=216.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
|...+++.+..+-.++|||.+. +-.|. ..+.++.. -..+..+++|+.|..+.+|.+.. ...+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hs---aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~k----p~~i--- 63 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE------FVAHS---AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGK----PNAI--- 63 (825)
T ss_pred Ccccccceeeeeeccccccchh------hhhhh---hhhceeee--eccceeeccCCCceeeccccccC----Cchh---
Confidence 4455666677777888888752 44455 56777776 46788999999999999999843 3222
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeE
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1204 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~V 1204 (1348)
..+.+|..+|.+ +.|+.....|++|+.+|+|++||++..+ .++++.+|... +.++ .|+|-+.+++.|+.|+.+
T Consensus 64 ~S~~~hespIeS----l~f~~~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~-~~sv-~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 64 TSLTGHESPIES----LTFDTSERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLN-ITSV-DFHPYGEFFASGSTDTDL 136 (825)
T ss_pred heeeccCCccee----eecCcchhhhcccccCCceeeeehhhhh-hhhhhhccccC-ccee-eeccceEEeccccccccc
Confidence 347899999999 8999999999999999999999999999 89999998876 8999 588999999999999999
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1205 rvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
++||.|... +...++ +|...|..+.|+|+ |+++++|+.|..++|||...+ +....|..|.+.+.++.|||..-
T Consensus 137 ~iwD~Rk~G-c~~~~~---s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 137 KIWDIRKKG-CSHTYK---SHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred eehhhhccC-ceeeec---CCcceeEEEeecCC--CceeeccCCcceeeeeccccc-ccccccccccccccccccCchhh
Confidence 999999766 455443 57788999999999 999999999999999999988 89999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1285 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1285 ~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
++++||.|++|++||++ -+.+...+. . ...|.+.+|+|+++.+++|..+
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~-~-------~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKP-E-------TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCC-c-------cCCceeeeecCCceeeecCchh
Confidence 99999999999999976 555655554 2 3789999999999999888654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=193.58 Aligned_cols=239 Identities=15% Similarity=0.294 Sum_probs=199.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
..|+++..+ +....++||+.|..+.++|... + ++. ..+.||...|.. +.++++...+++++.|..|+
T Consensus 220 pgi~ald~~--~s~~~ilTGG~d~~av~~d~~s--~--q~l---~~~~Gh~kki~~----v~~~~~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 220 PGITALDII--PSSSKILTGGEDKTAVLFDKPS--N--QIL---ATLKGHTKKITS----VKFHKDLDTVITASADEIIR 286 (506)
T ss_pred CCeeEEeec--CCCCcceecCCCCceEEEecch--h--hhh---hhccCcceEEEE----EEeccchhheeecCCcceEE
Confidence 357777773 4478999999999999999854 2 222 468999999888 89999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
||...... +......|.. +|+.+ ...+.|.+|++++.||+..+.|++++....... .....-.+++.+|+|+ |
T Consensus 287 vws~~~~s-~~~~~~~h~~-~V~~l-s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--~~~s~v~~ts~~fHpD--g 359 (506)
T KOG0289|consen 287 VWSVPLSS-EPTSSRPHEE-PVTGL-SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--DETSDVEYTSAAFHPD--G 359 (506)
T ss_pred eecccccc-Cccccccccc-cceee-eeccCCcEEEEecCCceEEEEEccCCcEEEEEe--eccccceeEEeeEcCC--c
Confidence 99988777 6666666655 59999 678999999999999999999999998554433 2123356999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccc
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~ 1319 (1348)
.+|.+|+.||.|+|||+.+. ..+..|.+|.++|..++|+.+|-+||++++|+.|++||++. +...++.. . .
T Consensus 360 Lifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-~------~ 431 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-D------E 431 (506)
T ss_pred eEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-c------c
Confidence 99999999999999999998 68899999999999999999999999999999999999653 44445544 2 2
Q ss_pred cCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...|.++.|.+.|.+|+.++.|=+|+++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEE
Confidence 3479999999999999999888777665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=194.63 Aligned_cols=267 Identities=19% Similarity=0.281 Sum_probs=199.4
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
+..++.+||+.+|....++++... ..-.++... .+.+++++.. -..|.+|.+..... .+ ...-..+.
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~--a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~---~~----q~~v~Pg~ 83 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYL--AQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQ---VV----QYIVLPGP 83 (476)
T ss_pred CCcceeEEecCCCceeEEecCccc--ccchhhhhh---chhheeeecccCccccccccCchhh---hh----hhcccccc
Confidence 345699999999999999987731 122222322 3356666653 45799999854111 11 01112334
Q ss_pred ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC-
Q 000697 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP- 1212 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~- 1212 (1348)
+.+ +.-++.|.++++|+-.|.|++|.+.++. .+..+.+|-.. |+|+ .++.+|.+|++|+.||.|.+|++-.-
T Consensus 84 v~a----l~s~n~G~~l~ag~i~g~lYlWelssG~-LL~v~~aHYQ~-ITcL-~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 84 VHA----LASSNLGYFLLAGTISGNLYLWELSSGI-LLNVLSAHYQS-ITCL-KFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred eee----eecCCCceEEEeecccCcEEEEEecccc-HHHHHHhhccc-eeEE-EEeCCCcEEEecCCCccEEEEEEEeec
Confidence 444 6667777777777799999999999999 99999888776 9999 67889999999999999999987521
Q ss_pred ----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1213 ----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1213 ----~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
......+..+.+|.-+|+.+...+++....++|+|.|.++++||+..+ ..+.++. ....+.+++++|-++.+.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe-cCCcceeEEEcccccEEEe
Confidence 112222234557889999999988744578999999999999999988 6777766 4668999999999999999
Q ss_pred EeCCCcEEEEEcC---C--------------ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GSAKQLIKVFSLE---G--------------EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~---g--------------~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.+|.|.+.++. | ..+..+.+ |. ....|+|++.+-||.+|++|+.||.|.|||
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~-----~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HE-----NESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeecc-cc-----CCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 9999999988743 1 12223333 22 124999999999999999999999999997
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=179.59 Aligned_cols=275 Identities=12% Similarity=0.238 Sum_probs=201.3
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
..++..|..-|.++.|.+.|+.+|+++.|++|+|||.++. .+...++.|. +.|..+.|....-|+.+++++.|
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~---~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD---GSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC---CcEEEEEecCccccceEEEEecC
Confidence 3455667778999999999999999999999999996533 5667789999 99999999866789999999999
Q ss_pred CeEEEEeccCCCCce--eEEeeeecccCCCCcccccceEEEEecC--CCeEEEEECCCeEEEEECCCCc-----eeeeee
Q 000697 1104 GNIRIWKDYDQKDKQ--KLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQ-----QMVNPI 1174 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~--~lvs~~~~l~~h~~~V~si~~~v~ws~~--~~~Ll~gg~Dg~IrVWDl~t~~-----~~v~~l 1174 (1348)
++++||.-.....+. ..-....++.+....|.. +.|.|. |-.+++++.||.+|||+.-... +...++
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D----V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD----VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeE----EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 999999863211111 111112345566667777 777764 5567778999999999865432 022222
Q ss_pred c------CCCCCCeEEEEEecC--CCCEEEEEeCC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC--C
Q 000697 1175 P------SSSDCSISALTASQV--HGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL--D 1239 (1348)
Q Consensus 1175 ~------~~~~~~VtsL~~~s~--dg~~LvsGs~D-----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~--~ 1239 (1348)
. +....+-.|+.|.+. ...+|+.|+.+ +.++||................+|..+|+.++|.|.. .
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 2 223334677754422 24678888876 5899998876553334444666899999999999982 2
Q ss_pred CCEEEEEECCCcEEEEEcCCCC-------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHK-------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~-------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
...|++++.|| |+||.++... +.+..+..|++.|..+.|+-.|.+|++.+.||.|++|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 35799999999 9999987311 345567789999999999999999999999999999983
Q ss_pred C----CceEEEEec
Q 000697 1301 E----GEQLGTIRY 1310 (1348)
Q Consensus 1301 ~----g~~l~~i~~ 1310 (1348)
+ -++...++.
T Consensus 318 ny~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 318 NYNNLWKCTSVLKA 331 (361)
T ss_pred hhhhhheeeeEEec
Confidence 2 345555554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=186.83 Aligned_cols=275 Identities=18% Similarity=0.286 Sum_probs=207.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE---EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN---SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~---~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
..|....|||.++-|++....|.+..|+++.+...+ .|+.++ ..-|.|++| .++| -++||.++|.|.||+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTF--LENG-DVITGDSGGNILIWSKG 275 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc--ceEEEEEEE--cCCC-CEEeecCCceEEEEeCC
Confidence 457788999999877666669999999999885554 355554 267999999 4454 57899999999999984
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc----------eeeeee--------
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----------QMVNPI-------- 1174 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~----------~~v~~l-------- 1174 (1348)
. .+.. +....|.+.|.+ ++.- .++.|++|+.|+.|..||-.-.+ ..++++
T Consensus 276 ~----~~~~---k~~~aH~ggv~~----L~~l-r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 276 T----NRIS---KQVHAHDGGVFS----LCML-RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred C----ceEE---eEeeecCCceEE----EEEe-cCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 3 3333 233489999988 3333 46778889999999999832111 011111
Q ss_pred ---------------------cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000697 1175 ---------------------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1175 ---------------------~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
.+|.+ ....+ ...+..+.+++++.|+.+++|+ ..+ ..-.... ..+..++.
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgl-a~hps~~q~~T~gqdk~v~lW~--~~k-~~wt~~~----~d~~~~~~ 414 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGD-ELWGL-ATHPSKNQLLTCGQDKHVRLWN--DHK-LEWTKII----EDPAECAD 414 (626)
T ss_pred EeeccceEEEeeecCCceEEEEeccc-ceeeE-EcCCChhheeeccCcceEEEcc--CCc-eeEEEEe----cCceeEee
Confidence 12222 24556 4556778999999999999999 333 3222212 26899999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEecc
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYH 1311 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~ 1311 (1348)
|+|. | .++.|+..|...+.|..+. ..+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.+ +|........
T Consensus 415 fhps--g-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k- 488 (626)
T KOG2106|consen 415 FHPS--G-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK- 488 (626)
T ss_pred ccCc--c-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-
Confidence 9999 7 9999999999999999985 55554444 889999999999999999999999999984 4666666655
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+. .++|+.+.|++|+++|.+.+.|-.|..|.
T Consensus 489 ~~------gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 489 CS------GSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ec------CceeEEeeecCCCceEEeccCceEEEEEc
Confidence 43 28999999999999999999999999883
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=209.66 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=175.0
Q ss_pred EEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccC------CCCcccccceEEE
Q 000697 1070 LNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVVVD 1142 (1348)
Q Consensus 1070 l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~------h~~~V~si~~~v~ 1142 (1348)
.+.++ .|. +.|.++.| ++||+|||+||.||.|+||.+...+. ..+. ...... ....+..... ..
T Consensus 259 ~Qe~~~ah~---gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~-~~~~--~~~~~~~~~~~~~~s~~~p~~s-~~ 329 (712)
T KOG0283|consen 259 VQEISNAHK---GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESER-MRVA--EGDSSCMYFEYNANSQIEPSTS-SE 329 (712)
T ss_pred eeccccccC---CcEEEEEe--CCCCceeeecCCCceEEEEEEeccch-hccc--ccccchhhhhhhhccccCcccc-cc
Confidence 34455 777 89999999 89999999999999999999855111 0000 000000 0000000000 00
Q ss_pred EecCCCeEE--EEECCCeEEEEECC----CCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000697 1143 WQQQSGYLY--ASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1216 (1348)
Q Consensus 1143 ws~~~~~Ll--~gg~Dg~IrVWDl~----t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v 1216 (1348)
=...+.... .+.....+. .+.. .++ ++..+.+|... |..| .|+ ..++|++++.|.+||+|++...+ ++
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~-~p~~~f~f~ek-P~~ef~GHt~D-ILDl-SWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL 403 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVL-LPLKAFVFSEK-PFCEFKGHTAD-ILDL-SWS-KNNFLLSSSMDKTVRLWHPGRKE-CL 403 (712)
T ss_pred ccccccccccccccCCcccc-CCCcccccccc-chhhhhccchh-heec-ccc-cCCeeEeccccccEEeecCCCcc-ee
Confidence 000000000 111111222 2211 234 78888999887 9999 554 56799999999999999999877 67
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 000697 1217 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1296 (1348)
Q Consensus 1217 ~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~ 1296 (1348)
+.+ .|...|+||+|+|. +.++|++|+-||.|+||++... .+..+..-..-|++++|.|+|+..+.|+.+|.++
T Consensus 404 ~~F----~HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 404 KVF----SHNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred eEE----ecCCeeEEEEeccc-CCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 766 57799999999998 8999999999999999999965 4555555567899999999999999999999999
Q ss_pred EEEcCCceEEE---EeccCCcccccccCCeEEEEEeCCCC-EEEEEECCCeEEEcC
Q 000697 1297 VFSLEGEQLGT---IRYHHPSFMAQKIGSVNCLTFHPYQV-LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1297 Vwd~~g~~l~~---i~~~h~~f~~~~~~~Vtslafspdg~-~Latgs~Dg~I~IWd 1348 (1348)
+|+..+..+.. +.- +.+-...+ ..|+++.|.|... .+++.+.|..|+|||
T Consensus 477 fY~t~~lk~~~~~~I~~-~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRL-HNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred EEEccCCeEEEeeeEee-ccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 99988765543 222 22222223 3899999998664 355566899999997
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=203.05 Aligned_cols=247 Identities=16% Similarity=0.241 Sum_probs=208.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.++.+++.+|+|++||+|+.-|+++||++.+.+.+..++.|+ ..|.|+.|.+.. ..++|++++.|..|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 689999999999999999999999999999999999999999 999999996432 346899999999999999954
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeecCC----CCCCeEEEEEe
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIPSS----SDCSISALTAS 1188 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~--~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~----~~~~VtsL~~~ 1188 (1348)
+..++ +++.+|...|++ +.|--.+ ..++++|.|+.|.+=-..+.. -...+..| ....+..| ..
T Consensus 536 --ny~l~---qtld~HSssITs----vKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t~t~~ktTlYDm-~V 604 (1080)
T KOG1408|consen 536 --NYDLV---QTLDGHSSSITS----VKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHTQTLSKTTLYDM-AV 604 (1080)
T ss_pred --ccchh---hhhcccccceeE----EEEeecCCceEEEeccCchhhheehhcccc-CceeccccccccccceEEEe-ee
Confidence 33344 678999999998 6665555 578888999877653333221 12222222 12237778 56
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
.+..+++++++.|..|+|||+.+++ .++.++...+|.+....+...|. |.++++.+.|.++.++|..++ +++.+..
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPS--giY~atScsdktl~~~Df~sg-EcvA~m~ 680 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPS--GIYLATSCSDKTLCFVDFVSG-ECVAQMT 680 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCC--ccEEEEeecCCceEEEEeccc-hhhhhhc
Confidence 7888999999999999999999998 78888888899999999999999 999999999999999999998 8999999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+|...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999964
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=220.96 Aligned_cols=287 Identities=20% Similarity=0.287 Sum_probs=218.3
Q ss_pred CeEEEEEcCCCC-EEEEEE----------CCCcEEEEECC--CC----cEEEEeeCCCCCCCCeEEEEEEeeCCCC----
Q 000697 1037 GTKTALLQPFSP-IVVAAD----------ENERIKIWNYE--ED----TLLNSFDNHDFPDKGISKLCLVNELDVS---- 1095 (1348)
Q Consensus 1037 ~I~sl~fspdg~-~Latgs----------~dg~I~VWd~~--t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~---- 1095 (1348)
+.-.++|+|++. ++++|. .+.++.||.+. +. +.+..+... .+...++|. ..+.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~--~~g~~~~G 81 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWG--SYGSHSHG 81 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeec--ccCCCccc
Confidence 345678999887 666552 35566777543 22 233334333 478899994 4333
Q ss_pred EEEEEeCCCeEEEEeccCC--CCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeee
Q 000697 1096 LLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
+|+.|..||.|.+||.... .+...++ .....|.+.|.. ++|++..+ .+++|++||.|.|||+...+ .-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~g----LDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLG----LDFNPFQGNLLASGADDGEILIWDLNKPE-TPF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHH---hhhcccCCceee----eeccccCCceeeccCCCCcEEEeccCCcC-CCC
Confidence 5899999999999998652 3333333 567789999998 99999888 56666789999999998865 333
Q ss_pred eec-CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC-
Q 000697 1173 PIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG- 1250 (1348)
Q Consensus 1173 ~l~-~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG- 1250 (1348)
... ......|.+++|.....++|++|+.+|.+.|||+|..+.++..- .+ +....+..+.|+|+ +...+++++.|.
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~-~~~~~~S~l~WhP~-~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DT-PGRMHCSVLAWHPD-HATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cC-CCccceeeeeeCCC-CceeeeeecCCCC
Confidence 332 11233499998777778899999999999999999987544332 22 22245889999999 777888888764
Q ss_pred --cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEE
Q 000697 1251 --DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1251 --~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
.|.+||+|....+++++++|...|.++.|++.+ .++++++.|+.|.+|+ -+|+.+..+.. . ...+..+
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-------~nW~fdv 302 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-------GNWCFDV 302 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-------Ccceeee
Confidence 499999998878999999999999999999976 7999999999999999 56888888765 3 3789999
Q ss_pred EEeCCCC-EEEEEECCCeEEEcC
Q 000697 1327 TFHPYQV-LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~-~Latgs~Dg~I~IWd 1348 (1348)
.|+|... .+++++-||.|.||+
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eecCCCcchhhhheeccceeeee
Confidence 9999886 778888899999985
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=200.07 Aligned_cols=242 Identities=17% Similarity=0.277 Sum_probs=197.0
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe-cC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQ 1146 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~ 1146 (1348)
+..+.+.+|. ..|..+++ .++..++++|.||++++|+-.. +... ....+.+|.+.+... ++|- .+
T Consensus 5 ~ls~~l~gH~---~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~--~~~l---~~~~~~~~~g~i~~~---i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEGHK---SDVRAVAV---TDGVCIISGSRDGTVKVWAKKG--KQYL---ETHAFEGPKGFIANS---ICYAESD 70 (745)
T ss_pred eeEEEeccCc---cchheeEe---cCCeEEeecCCCCceeeeeccC--cccc---cceecccCcceeecc---ceecccc
Confidence 4556788999 78888887 3667899999999999999744 1111 112355666665552 3443 46
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
++.+++|+.|++|.+|...... +...+.+|... |.|+.. ..++. +++|+-|.++++|-...-. . ...+|.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~-P~~~LkgH~sn-VC~ls~-~~~~~-~iSgSWD~TakvW~~~~l~---~---~l~gH~ 140 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAE-PLYTLKGHKSN-VCSLSI-GEDGT-LISGSWDSTAKVWRIGELV---Y---SLQGHT 140 (745)
T ss_pred CcceEeecccceEEEEecCCCC-chhhhhccccc-eeeeec-CCcCc-eEecccccceEEecchhhh---c---ccCCcc
Confidence 6789999999999999999999 99999999887 999943 33444 9999999999999765332 2 355888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~ 1306 (1348)
..|.++..-|. + .++|||.|.+|++|.-. +.+++|.+|.+.|+++++-+++ .|++++.||.|++|+++|+.+.
T Consensus 141 asVWAv~~l~e--~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 141 ASVWAVASLPE--N-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred hheeeeeecCC--C-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceee
Confidence 99999999987 4 99999999999999763 7899999999999999999764 5778889999999999999999
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+ |+ +.|.+++...++..++++++|++++||+
T Consensus 214 ~~~g-ht-------n~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 214 EMHG-HT-------NFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred eeec-cc-------eEEEEEEecCCCCeEEEecCCceEEEee
Confidence 9988 76 6799999777888999999999999996
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=176.69 Aligned_cols=279 Identities=15% Similarity=0.241 Sum_probs=205.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
-.|+.|++-|.+||+|+.||.|.|||+.+...-+.+.+|. .+|++++| ++||..|+|+|.|..|++||+.. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~--gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLK--GS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEe--cCCCCEeeeecCCceeEEEeccC--CC
Confidence 7899999999999999999999999999988888899999 89999999 89999999999999999999976 33
Q ss_pred eeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEE---EEecCCCC
Q 000697 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISAL---TASQVHGG 1193 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL---~~~s~dg~ 1193 (1348)
... .+ ....+|.. +.|+|.....++++ .+..-.+-++.... ...++...+...... .++.+.|+
T Consensus 99 ~l~-----ri-rf~spv~~----~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 99 PLK-----RI-RFDSPVWG----AQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred cee-----EE-EccCccce----eeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC
Confidence 211 11 13456666 78888766655554 33333444444322 222222211111111 14788999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--------cceE
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------DAYL 1265 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--------~~v~ 1265 (1348)
++++|...|.+.+||..+.+ ++..++... ...|..+.++.. |+.|+.-+.|..|+.|+++.-. ++.+
T Consensus 167 yIitGtsKGkllv~~a~t~e-~vas~rits--~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLE-CVASFRITS--VQAIKQIIVSRK--GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEEecCcceEEEEecchhe-eeeeeeech--heeeeEEEEecc--CcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 99999999999999999887 444443221 267889999988 9999999999999999987321 1111
Q ss_pred EEec--CCCCeEEEEEeCCCCEEEEEeC-CCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1266 TIDA--HRGSLSALAVHRHAPIIASGSA-KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1266 t~~~--h~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
.++. .+..-.+++|+.+|.++++|+. ...++||. ..|..++.+.+ .. ......+.|||-...+++- ..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-~k------gE~l~DV~whp~rp~i~si-~s 313 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-TK------GEELLDVNWHPVRPIIASI-AS 313 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-Cc------hhheeecccccceeeeeec-cC
Confidence 1110 1223467899999999888864 45699999 56888888877 33 2567889999999999888 68
Q ss_pred CeEEEcC
Q 000697 1342 ACVSIHS 1348 (1348)
Q Consensus 1342 g~I~IWd 1348 (1348)
|.|+||.
T Consensus 314 g~v~iw~ 320 (405)
T KOG1273|consen 314 GVVYIWA 320 (405)
T ss_pred CceEEEE
Confidence 8999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=193.60 Aligned_cols=299 Identities=15% Similarity=0.227 Sum_probs=220.2
Q ss_pred CCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCc---------------------EEEEe----------eCCCC
Q 000697 1033 RFEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDT---------------------LLNSF----------DNHDF 1078 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~~---------------------~l~~~----------~~h~~ 1078 (1348)
.|...|.+++|...+. +|++++.|..||||.+.-+. ....+ .+|.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe- 267 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE- 267 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-
Confidence 4667899999987554 88999999999999764221 11112 3788
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCe
Q 000697 1079 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1158 (1348)
Q Consensus 1079 ~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~ 1158 (1348)
+.|.++.| ++.+..|++++.|.++.+|...+..|-....-......+....-.+ .-|++++..+++-|..|.
T Consensus 268 --DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g----~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 268 --DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG----GLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred --cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceee----EEEcCCCCEEEEecccCc
Confidence 89999999 7888899999999999999987754544443333333333444444 789999999999999999
Q ss_pred EEEEECCCCc--eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-----------------------
Q 000697 1159 IMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----------------------- 1213 (1348)
Q Consensus 1159 IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----------------------- 1213 (1348)
.++|-..... .....+.+|.+. |+++ .+.|.|.++++.+.|.+-|+|-.-..+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~-V~dv-~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDG-VKDV-DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred EEEEeccCccceeecccccccccc-ceee-eecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 9999833221 133445677776 9999 667788888888888777765332000
Q ss_pred -----------eeeEee---------------------------------------------------------------
Q 000697 1214 -----------MLVCST--------------------------------------------------------------- 1219 (1348)
Q Consensus 1214 -----------~~v~~~--------------------------------------------------------------- 1219 (1348)
++.+.+
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 000000
Q ss_pred ---------------------cCCCCCCCCeEEEEEecCCCCCEEEEEECCC-----cEEEEEcCCCCcceEEEecCCCC
Q 000697 1220 ---------------------RPHTQQVERVVGISFQPGLDPAKIVSASQAG-----DIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1220 ---------------------~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG-----~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
+..-||...|.+++.+|+ ++++++++... .|++|+..+. ..+..+.+|.-.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~--gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLT 574 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT--GNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLT 574 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC--CCEEeehhhhCCccceEEEEEeccch-hhhheecccceE
Confidence 011247778999999999 99999998654 4999999988 677789999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.++|+|||++|++.|.|+++.+|+........++. .+...|..-|++..|+|++.++||+|.|.+|+||.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999999853222222211 01224557899999999999999999999999994
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=193.49 Aligned_cols=285 Identities=17% Similarity=0.202 Sum_probs=198.9
Q ss_pred eEEEEEcCC---CCEEEEEECCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1038 TKTALLQPF---SPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1038 I~sl~fspd---g~~Latgs~dg~I~VWd~~t~~------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
+.+..|++. ...|+.+.++|.|.++|.+... .+..+..|. ..|.++.|. +....|++++.|.++++
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~---nAifDl~wa--pge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK---NAIFDLKWA--PGESLLVSASGDSTIRP 126 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc---ceeEeeccC--CCceeEEEccCCceeee
Confidence 355677653 3489999999999999987532 235567788 899999994 67789999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECCCeEEEEECCCCce------------------
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQ------------------ 1169 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWDl~t~~~------------------ 1169 (1348)
||+.. .+..-. +.+.+|...|.+ ++|.+.+..+++ ||.||.|.|||++....
T Consensus 127 Wdvk~--s~l~G~---~~~~GH~~SvkS----~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 127 WDVKT--SRLVGG---RLNLGHTGSVKS----ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred eeecc--ceeecc---eeecccccccch----hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99976 222111 347899999999 888888776555 57999999999874320
Q ss_pred --------eeeeecCCCCC---CeEEEEEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeec----CCCCC---CCCeE
Q 000697 1170 --------MVNPIPSSSDC---SISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTR----PHTQQ---VERVV 1230 (1348)
Q Consensus 1170 --------~v~~l~~~~~~---~VtsL~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~----~~~~h---~~~I~ 1230 (1348)
.+....++... .|+.+ ++ .|...|++++. ||.|+|||+|......+.-. ....| ...++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv-~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVV-LF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEE-EE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 00111112111 24455 44 46777887776 99999999997653222110 11112 34577
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecCCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGS--LSALAVHRHAPIIASGSAKQLIKVFSLEG--EQL 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~~~--VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l 1305 (1348)
++..... |.++.+.+.|+.|.+|+++..+ .++..+.++... -..-..+||+.++++|+.|...++|.++. ...
T Consensus 276 nL~lDss--Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 276 NLILDSS--GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EEEecCC--CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888777 7887777779999999998643 345555544321 12334689999999999999999999654 233
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
..+.+ | .-.|++++|.|.. .-++|++.|.+++||+
T Consensus 354 ~~l~G-h-------t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 354 ALLLG-H-------TREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hhhhC-c-------ceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 34444 4 3789999998765 4577779999999995
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=181.59 Aligned_cols=294 Identities=16% Similarity=0.303 Sum_probs=215.5
Q ss_pred ccCCcccccccC----------CCCCeEEEEEcCC--CCEEEEEE--CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEE
Q 000697 1022 KLNNPIACWDTR----------FEKGTKTALLQPF--SPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1022 kl~~~i~~Wd~~----------~~~~I~sl~fspd--g~~Latgs--~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~ 1087 (1348)
++...+.+|+.. ...+|.|++|++- |.+|..-+ .+..+.||||+.+......+..+ ..|....
T Consensus 131 ~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn---e~v~~a~ 207 (626)
T KOG2106|consen 131 PLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN---EVVFLAT 207 (626)
T ss_pred cCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc---ceEEEEE
Confidence 344567778733 3478999999984 44665554 45568999999988888888777 7889999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
| +|.+..|+.....|.+..|+... +. +......+..+.. ...++++|.+ ++.+++|..+|.|.||+..+.
T Consensus 208 F--HPtd~nliit~Gk~H~~Fw~~~~--~~--l~k~~~~fek~ek---k~Vl~v~F~e-ngdviTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 208 F--HPTDPNLIITCGKGHLYFWTLRG--GS--LVKRQGIFEKREK---KFVLCVTFLE-NGDVITGDSGGNILIWSKGTN 277 (626)
T ss_pred e--ccCCCcEEEEeCCceEEEEEccC--Cc--eEEEeeccccccc---eEEEEEEEcC-CCCEEeecCCceEEEEeCCCc
Confidence 9 45555555555667999998865 22 2211123333332 2233488986 467889999999999999888
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe----------eeEee-c----------------
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM----------LVCST-R---------------- 1220 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~----------~v~~~-~---------------- 1220 (1348)
+ ..+....|.++ |.+++ .-.+| .|++|+.|..|..||-.-.+. .+++. +
T Consensus 278 ~-~~k~~~aH~gg-v~~L~-~lr~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 278 R-ISKQVHAHDGG-VFSLC-MLRDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred e-EEeEeeecCCc-eEEEE-EecCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 7 77777777665 99994 44455 455699999999999432110 00000 0
Q ss_pred ---------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC
Q 000697 1221 ---------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1221 ---------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~ 1291 (1348)
...+|......++.+|+ .+.+++++.|+.+++|+ .. ++.-+.. -..+..|++|||.| .+|.|+.
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v~lW~--~~-k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHVRLWN--DH-KLEWTKI-IEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCC--hhheeeccCcceEEEcc--CC-ceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence 01246777888999998 89999999999999999 22 3444333 35678999999999 9999999
Q ss_pred CCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1292 KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1292 Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.|...|.|.+...+.+++. . ..++++++|+|+|.+||.|+.|+.|+||
T Consensus 427 ~G~w~V~d~e~~~lv~~~~-d-------~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHT-D-------NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred cceEEEEecccceeEEEEe-c-------CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999999988777777765 2 3799999999999999999999999998
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=182.95 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=198.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+..+|++-.+|.|++||+.+++.+..|+++. ..+..+.|+.......+.+|+.||+||+||++......+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----~ 111 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-----S 111 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----e
Confidence 3679999999999999999999999999999 7889999986556788999999999999999873333322 2
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE----CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg----~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
...+.+.... +++-+-.++.+.+|. .+-.|.+||++..++.+..+...+...|+++.+.+.+.++|++|+.||
T Consensus 112 ~~~~~~~~f~---~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 112 WTQQSGTPFI---CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ccCCCCCcce---EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3444422221 244433455566553 467799999999884477666544445999998888999999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-----------
Q 000697 1203 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR----------- 1271 (1348)
Q Consensus 1203 ~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~----------- 1271 (1348)
-|.+||+......-...... .|.+.|.++.|... +.+.|.+-+..++..+|++..+. +...+....
T Consensus 189 LvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~-~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~ 265 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSK-KYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDN 265 (376)
T ss_pred eEEeeecCCCcchhhHHHhh-cccceeeeeeeecC-CcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhh
Confidence 99999998654221111122 45678999999877 45679999999999999999873 333332110
Q ss_pred -CCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCc-eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1272 -GSLSALAVHRHAPIIASGSA-KQLIKVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1272 -~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~g~-~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+-......++..++.++. -++..++-+... ....... ...+.++|..-|.++.|...+.++.|||.||.+.+|.
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~-~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE-PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCc-cccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11111112223445544443 555555543211 1111111 2223345668899999999999999999999999994
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=177.51 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=203.4
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
..++.+.+|. ++|..++- ......+.+++.|.+-+||.++. +.+. ..+.||.+.|++ +.|++.+
T Consensus 139 ~lvre~~GHk---DGiW~Vaa--~~tqpi~gtASADhTA~iWs~Es--g~CL-----~~Y~GH~GSVNs----ikfh~s~ 202 (481)
T KOG0300|consen 139 RLVRELEGHK---DGIWHVAA--DSTQPICGTASADHTARIWSLES--GACL-----ATYTGHTGSVNS----IKFHNSG 202 (481)
T ss_pred eehhhhcccc---cceeeehh--hcCCcceeecccccceeEEeecc--ccce-----eeecccccceee----EEecccc
Confidence 4566788999 89999988 55667899999999999999976 5443 358999999999 8999999
Q ss_pred CeEEEEECCCeEEEEEC------CC---------Cc------------------------eeeeeecCCCCCCeEEEEEe
Q 000697 1148 GYLYASGEVSSIMLWDL------EK---------EQ------------------------QMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl------~t---------~~------------------------~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
..+++++.|++-.||.. .. ++ .++..+.+|..- |.+. -|
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v-V~a~-dW 280 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV-VSAC-DW 280 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc-eEeh-hh
Confidence 99999999999999961 11 00 123445555443 5555 34
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
-..|+.+++++-|.+-.+||+.+++ .+. .+.||....+.++-+|. .+.+++.+.|.+.++||++..-..+..|+
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge-~v~---~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGE-VVN---ILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCc-eec---cccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 4578999999999999999999998 555 45688899999999999 99999999999999999997667889999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+|...|++..|.-+ ..+++|+.|.+|+|||+. ...+.+++. .++++.++.+..+..+|.--.+..|++
T Consensus 355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt---------dS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT---------DSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec---------CCccceeEeecCCceEEeccCCceEEE
Confidence 99999999999865 468899999999999965 356777776 268999999998889999888899999
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
||
T Consensus 425 fD 426 (481)
T KOG0300|consen 425 FD 426 (481)
T ss_pred Ee
Confidence 86
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=195.99 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=186.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+-+.|+| .++|++|+|++.||.|++|+......+++.+ ..+...|.+ ..-.++++++|+.+++|.
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti------~~~g~~v~~------ia~~s~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETI------DISGELVSS------IACYSNHFLTGSEQNTVL 79 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchh------hccCceeEE------EeecccceEEeeccceEE
Confidence 67889999 7899999999999999999986633333322 223333433 333567999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
+|....++ ...+-....-++.++ .++.+|+++++|+.|-.|++.+..... ..+ ..++|.++|.++.++|. +
T Consensus 80 ~y~fps~~--~~~iL~Rftlp~r~~-~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~---~lrgh~apVl~l~~~p~--~ 150 (933)
T KOG1274|consen 80 RYKFPSGE--EDTILARFTLPIRDL-AVSGSGKMIAAGSDDTAVKLLNLDDSS-QEK---VLRGHDAPVLQLSYDPK--G 150 (933)
T ss_pred EeeCCCCC--ccceeeeeeccceEE-EEecCCcEEEeecCceeEEEEeccccc-hhe---eecccCCceeeeeEcCC--C
Confidence 99988776 222333334458888 677899999999999999999998776 333 33477899999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecC--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEecc
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYH 1311 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~ 1311 (1348)
++||+.+.||.|++||+.++ .+..++.+- ...++.++|||+|..++..+.|+.|++|+.. .+....++.
T Consensus 151 ~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~- 228 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD- 228 (933)
T ss_pred CEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-
Confidence 99999999999999999987 555555432 3356789999998888888899999999954 455556655
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. +...+++++|+|.|+|||+++.||.|.|||
T Consensus 229 ~~-----~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 229 KL-----SSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred cc-----cccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 21 224499999999999999999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=206.05 Aligned_cols=240 Identities=20% Similarity=0.396 Sum_probs=207.0
Q ss_pred cccccCCC----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1028 ACWDTRFE----KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1028 ~~Wd~~~~----~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
.+|+.++. ..+.++..-..++.+++|+.|..+.+|....-..+..+.+|. ..|.++.| +.+..+|++|+.+
T Consensus 17 r~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f--~~~E~Llaagsas 91 (825)
T KOG0267|consen 17 RVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---SPIESLTF--DTSERLLAAGSAS 91 (825)
T ss_pred ccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---Ccceeeec--CcchhhhcccccC
Confidence 35766653 567788877778899999999999999988777777899999 89999999 7888999999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
|+|++||++. .+.+ +++.+|...+.+ ++|+|-+.+.+.|+.|+.+++||.+... |...+.+|... |.
T Consensus 92 gtiK~wDlee----Ak~v---rtLtgh~~~~~s----v~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~v-v~ 158 (825)
T KOG0267|consen 92 GTIKVWDLEE----AKIV---RTLTGHLLNITS----VDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRV-VD 158 (825)
T ss_pred Cceeeeehhh----hhhh---hhhhccccCcce----eeeccceEEeccccccccceehhhhccC-ceeeecCCcce-eE
Confidence 9999999965 2223 678999998887 8999999999888999999999999888 99999986554 77
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
.+ .+.|+|++++.|+.|.++++||...++ +... +..|.+.+.++.|+|. .-.+++|+.|++|++||+++. +.
T Consensus 159 ~l-~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~e---f~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dletf-e~ 230 (825)
T KOG0267|consen 159 VL-RLSPDGRWVASGGEDNTVKIWDLTAGK-LSKE---FKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLETF-EV 230 (825)
T ss_pred EE-eecCCCceeeccCCcceeeeecccccc-cccc---cccccccccccccCch--hhhhccCCCCceeeeecccee-EE
Confidence 77 789999999999999999999999887 5554 4567799999999998 889999999999999999987 67
Q ss_pred eEEEecCCCCeEEEEEeCCCCEEEEEeCCC
Q 000697 1264 YLTIDAHRGSLSALAVHRHAPIIASGSAKQ 1293 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg~~LasgS~Dg 1293 (1348)
+.........|.+..|+|+++.+++|..+.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhh
Confidence 777777788999999999999999987653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=171.66 Aligned_cols=257 Identities=14% Similarity=0.294 Sum_probs=184.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe-cC-CCeEEEEECCCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQ-SGYLYASGEVSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~-~~~Ll~gg~Dg~ 1158 (1348)
+-|.++.| ...|..++||+.|++|+|||.....+...+...| +.|.+.|.. +.|- |. |..+++++.|++
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~r----V~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWR----VVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEE----EEecCccccceEEEEecCCc
Confidence 67999999 7899999999999999999987767777777555 557888877 7784 33 556677789999
Q ss_pred EEEEECC--CCc------eeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCee---------eEeec
Q 000697 1159 IMLWDLE--KEQ------QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDML---------VCSTR 1220 (1348)
Q Consensus 1159 IrVWDl~--t~~------~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~---------v~~~~ 1220 (1348)
+.||.-. ..+ ....++..... .|+.+.+.+. -|-.+++++.||.+|||+.-..-.. .....
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999742 111 02234444444 4999955433 3668999999999999987643211 11111
Q ss_pred CCCCCCCCeEEEEEecC-CCCCEEEEEECC-----CcEEEEEcCCCC---cceEEEecCCCCeEEEEEeCC-CC---EEE
Q 000697 1221 PHTQQVERVVGISFQPG-LDPAKIVSASQA-----GDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRH-AP---IIA 1287 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~-~~g~~LaSgs~D-----G~I~IWDlr~~~---~~v~t~~~h~~~VtsLa~spd-g~---~La 1287 (1348)
+...+.....|+.|+|. .....|+.|+.+ +.++||...... ..+.++.+|..+|+.++|.|+ |+ +||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 22245677889999876 235678888876 579999877553 345567799999999999997 32 899
Q ss_pred EEeCCCcEEEEEcCCce-------------EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLEGEQ-------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~g~~-------------l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++.|| |+||++.... +..+..+.-+....|.+.|+.+.|+-.|.+|++.|.||.|++|.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 999999 9999965311 11111000011235779999999999999999999999999994
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-18 Score=186.01 Aligned_cols=247 Identities=15% Similarity=0.226 Sum_probs=189.3
Q ss_pred ccCCcccccccCC----------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEee
Q 000697 1022 KLNNPIACWDTRF----------EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1091 (1348)
Q Consensus 1022 kl~~~i~~Wd~~~----------~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns 1091 (1348)
..++++..|+... .+.|..|+++. ..++++++|.+|+.|.++ +..++++.+.. .+..+.- .
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s----~~~gIdh--~ 156 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKS----VYLGIDH--H 156 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeeccc----ccccccc--c
Confidence 4567788888764 46899999987 667788889999999987 45667776554 5666666 3
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCcee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~ 1170 (1348)
..++.++|+|.+ |.|||.+...-. +.+.--.+.+.+ +.|+|....|+++ +.|+.|.+||+++.. +
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R~~Pv-------~smswG~Dti~s----vkfNpvETsILas~~sDrsIvLyD~R~~~-P 222 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQRDNPV-------SSMSWGADSISS----VKFNPVETSILASCASDRSIVLYDLRQAS-P 222 (433)
T ss_pred cccccccccCce--eeecccccCCcc-------ceeecCCCceeE----EecCCCcchheeeeccCCceEEEecccCC-c
Confidence 466788888875 999998652211 222323344444 8899987776666 499999999999998 7
Q ss_pred eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1171 v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
++.+..... -+.| +|+|++..|++|++|..++.||+|.....+. .+.+|.+.|.++.|+|. |+.+++||.|.
T Consensus 223 l~KVi~~mR--TN~I-swnPeafnF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfspt--G~EfvsgsyDk 294 (433)
T KOG0268|consen 223 LKKVILTMR--TNTI-CWNPEAFNFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPT--GQEFVSGSYDK 294 (433)
T ss_pred cceeeeecc--ccce-ecCccccceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCC--cchhccccccc
Confidence 766554322 3667 5667999999999999999999998765554 56688899999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEec-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1251 DIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~-h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
+|+||..+.+ .....+.. .-..|.|+.|+-|.+++++||+|+.|++|..
T Consensus 295 sIRIf~~~~~-~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 295 SIRIFPVNHG-HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEeecCCC-cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999876 22222211 1246899999999999999999999999983
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=181.28 Aligned_cols=252 Identities=21% Similarity=0.341 Sum_probs=177.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC------CC---ceeEEeeeecccCCCCcccccceEEEEecC-CCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ------KD---KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL 1150 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~------~~---~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~L 1150 (1348)
+.|..+.-.+-.+..+.++=+..|.|.||++... .+ .........++.+|...-+. ++|+|- .+.+
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~----LdWSp~~~g~L 227 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG----LDWSPIKTGRL 227 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee----eeccccccccc
Confidence 3444444422235556666788999999998431 00 00111122445667655444 999984 4568
Q ss_pred EEEECCCeEEEEECCCCceee---eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1151 YASGEVSSIMLWDLEKEQQMV---NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v---~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
++|...+.|++|...++. -. ..+.+|..+ |-.|.|.+....+|++|+.||+|+|||+|.+.+...... +.|.+
T Consensus 228 lsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~S-VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~s 303 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKS-VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNS 303 (440)
T ss_pred ccCccccceEeeeeccCc-eeecCccccccccc-hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCC
Confidence 888788899999988875 32 234566665 999966666778999999999999999998843333321 46779
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC--CcceEEEecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCce
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH--KDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~--~~~v~t~~~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
.|+-|.|+.. ..+|++|+.||+++|||+|.. ++++.+|+.|+.+|+++.|||+. ..|++++.|..|.+||+.-+.
T Consensus 304 DVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 DVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999988 669999999999999999953 37899999999999999999974 588889999999999953110
Q ss_pred ------------EEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCe
Q 000697 1305 ------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADAC 1343 (1348)
Q Consensus 1305 ------------l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~ 1343 (1348)
+..+.. .--|..+....+..+.||+.- .+|++.+.||.
T Consensus 382 D~ee~~~~a~~~L~dlPp-QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPP-QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ChhhhccccccchhcCCc-eeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 111110 000111223568889999876 57777777874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=186.00 Aligned_cols=282 Identities=16% Similarity=0.262 Sum_probs=220.3
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
|.......|..++|-|||..|+.+. +..+.|||..+|..++++++|. +.|.+++| +.||+.+++|+.|+.|.+|
T Consensus 7 ~r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK---DtVycVAy--s~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 7 WRDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAY--AKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhcccccchheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc---ceEEEEEE--ccCCceeccCCCceeEEEe
Confidence 4444445899999999999888776 5689999999999999999999 99999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
.-.. +|. + -..|...|.+ +.|+|-+..+++++-+ ..-+|...... +...+ ....|.+. .|.
T Consensus 81 ~~kl-EG~--L------kYSH~D~IQC----MsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~k--ss~R~~~C-sWt 141 (1081)
T KOG1538|consen 81 TSKL-EGI--L------KYSHNDAIQC----MSFNPITHQLASCSLS-DFGLWSPEQKS--VSKHK--SSSRIICC-SWT 141 (1081)
T ss_pred cccc-cce--e------eeccCCeeeE----eecCchHHHhhhcchh-hccccChhhhh--HHhhh--hheeEEEe-eec
Confidence 8643 121 1 1358888887 8999988888887632 25578766544 22222 23346666 678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~---~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+|.+++.|-.||+|.+-+....+ .++.- ...|..++|.+++|+|. +....+++...+.++.+|.+.. +.+..
T Consensus 142 nDGqylalG~~nGTIsiRNk~gEe-k~~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk 217 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKNGEE-KVKIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGK 217 (1081)
T ss_pred CCCcEEEEeccCceEEeecCCCCc-ceEEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecc
Confidence 899999999999999987544333 44433 33467789999999997 2335788888888898888873 34433
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
-+.-.-...|+.+.++|.++..|+.|+.+++|.-+|-.+.++.. .+ ..|+.++.+|++++++.|..||+|.-
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-~D-------~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-QD-------SWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-cc-------eeEEEEEEccCCceEEEEEccCeeeh
Confidence 33334456789999999999999999999999999988888765 44 78999999999999999999999987
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
|+
T Consensus 290 yN 291 (1081)
T KOG1538|consen 290 YN 291 (1081)
T ss_pred hh
Confidence 64
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=187.51 Aligned_cols=251 Identities=18% Similarity=0.293 Sum_probs=202.7
Q ss_pred cCCcccccccCCC---------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEE
Q 000697 1023 LNNPIACWDTRFE---------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1023 l~~~i~~Wd~~~~---------------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~ 1087 (1348)
-++-+++|+.... +-|.++.++|||+.|++|++-.++.|||+......-..+... ..-.+.+++
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa 516 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALA 516 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhh
Confidence 4466888988753 558899999999999999999999999998653322211111 013566777
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
. ++|.+..+++..||.|.|||+.. ..++ +.+++|...+.| ++.+++|..|.+||-|++||.||++.+
T Consensus 517 ~--spDakvcFsccsdGnI~vwDLhn----q~~V---rqfqGhtDGasc----Idis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 517 I--SPDAKVCFSCCSDGNIAVWDLHN----QTLV---RQFQGHTDGASC----IDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred c--CCccceeeeeccCCcEEEEEccc----ceee---ecccCCCCCcee----EEecCCCceeecCCCccceeehhhhhh
Confidence 7 79999999999999999999955 4555 789999999998 888899999999999999999999988
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. .+..... .+.|.++ -+.|.+.+++.|-.++.|.|......++. . ...|.+.|.++.|.+. |+++++.+
T Consensus 584 r-qlqqhdF--~SQIfSL-g~cP~~dWlavGMens~vevlh~skp~ky-q----lhlheScVLSlKFa~c--GkwfvStG 652 (705)
T KOG0639|consen 584 R-QLQQHDF--SSQIFSL-GYCPTGDWLAVGMENSNVEVLHTSKPEKY-Q----LHLHESCVLSLKFAYC--GKWFVSTG 652 (705)
T ss_pred h-hhhhhhh--hhhheec-ccCCCccceeeecccCcEEEEecCCccce-e----ecccccEEEEEEeccc--CceeeecC
Confidence 7 4443332 3348999 66789999999999999999888766622 1 2256799999999999 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|..+..|.+..+ ..+...+ ....|.+++++-+.++|++||.|+...||.+
T Consensus 653 kDnlLnawrtPyG-asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYG-ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccc-cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999887 4554444 3567999999999999999999999888864
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-13 Score=169.75 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=187.7
Q ss_pred EECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEE
Q 000697 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1141 (1348)
Q Consensus 1062 Wd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1141 (1348)
|+.+ |..+..+..|. ..|..++.. ++++.++++||+||+||+|+.....+......+..++.-....+.. +
T Consensus 1034 W~p~-G~lVAhL~Ehs---~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~----v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS---SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK----V 1104 (1431)
T ss_pred CCcc-ceEeehhhhcc---ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE----E
Confidence 7765 88888898888 777788874 5667999999999999999997644432222222222222334444 5
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCc------eeeeeecCCCCCCeEEEEEecC-CCC-EEEEEeCCCeEEEEECCCCC
Q 000697 1142 DWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPIPSSSDCSISALTASQV-HGG-QLAAGFVDGSVRLYDVRTPD 1213 (1348)
Q Consensus 1142 ~ws~~~~~Ll~gg~Dg~IrVWDl~t~~------~~v~~l~~~~~~~VtsL~~~s~-dg~-~LvsGs~DG~VrvwDlr~~~ 1213 (1348)
...+.+..+++++.||.|++.+++... .+.+....+..+.+.++..+.. .+. .++.+...+.|..||+|+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 666788999999999999999987621 0233333445555777644332 334 78889999999999999876
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCC---E-EEE
Q 000697 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAP---I-IAS 1288 (1348)
Q Consensus 1214 ~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~---~-Las 1288 (1348)
.. ... .+....+.|++++.+|. +.++++|+..|.+-+||+|-+ .++..+. ++..+++.+..+|-.+ . +.+
T Consensus 1185 ~~-w~l-k~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1185 DA-WRL-KNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hH-Hhh-hcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 32 222 22233478999999999 999999999999999999987 7777765 4567888888887533 4 444
Q ss_pred Ee-CCCcEEEEEc-CCceEEEEeccCCc---c-----cc----cccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GS-AKQLIKVFSL-EGEQLGTIRYHHPS---F-----MA----QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS-~Dg~I~Vwd~-~g~~l~~i~~~h~~---f-----~~----~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+ ..+.|.+|++ .|..-..+.. .++ + .. ++.-......+..-+.++.+|++|..|+.||
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~-s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWA-SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEc-CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44 5788999994 4544444443 211 0 00 1122333445566678999999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=172.26 Aligned_cols=259 Identities=11% Similarity=0.127 Sum_probs=181.4
Q ss_pred CCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~L-atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~IrIWdl~~ 1113 (1348)
..+.+++|+|++..+ ++++.++.|++||..+++.+..+..+. .+..+.| +++++.++++ +.++.|++||+.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----DPELFAL--HPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCC
Confidence 447789999999976 566788999999999988887776544 3567788 6888877655 5689999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
.+ .+ ..+.. ...+.+ ++|++++..+++++.++ .+.+||.++.+ .+..+.... .+.++ .+++++
T Consensus 105 --~~--~~---~~~~~-~~~~~~----~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg 168 (300)
T TIGR03866 105 --RK--VL---AEIPV-GVEPEG----MAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVLVDQ--RPRFA-EFTADG 168 (300)
T ss_pred --Ce--EE---eEeeC-CCCcce----EEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEEcCC--CccEE-EECCCC
Confidence 22 22 11221 122334 88999999999887664 57788998877 655543322 24566 567888
Q ss_pred CEEEEE-eCCCeEEEEECCCCCeeeEeecCC--CCC--CCCeEEEEEecCCCCCEEEE-EECCCcEEEEEcCCCCcceEE
Q 000697 1193 GQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--TQQ--VERVVGISFQPGLDPAKIVS-ASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1193 ~~LvsG-s~DG~VrvwDlr~~~~~v~~~~~~--~~h--~~~I~sl~~sp~~~g~~LaS-gs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+.++++ ..+|.|++||+++++ ....+... ..+ ......+.|+|+ ++.+++ ...++.|.+||++++ +.+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~d--g~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKD--GKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCC--CCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 877554 469999999999876 33333111 001 123456889998 777544 455678999999876 55554
Q ss_pred EecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
+. +...+.+++|+|+|..|+++ +.++.|+|||. +++.+..++. . ...++++|+|
T Consensus 245 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~--------~~~~~~~~~~ 300 (300)
T TIGR03866 245 LL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-G--------RLPWGVVVRP 300 (300)
T ss_pred EE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-c--------cccceeEeCC
Confidence 43 44578999999999998876 46899999995 5666777765 2 3457787765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=181.94 Aligned_cols=269 Identities=14% Similarity=0.239 Sum_probs=198.4
Q ss_pred EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE--eCCCeEEEEeccCCCCceeEEeeeeccc
Q 000697 1051 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA--SCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1128 (1348)
Q Consensus 1051 atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg--s~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1128 (1348)
.+++....+++||....+....+-.+.++ -.+.+++| +.. ++|+++ +.|..|++|.-....++...+ +...
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w--~~~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~---~k~~ 78 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNW--QRR-NFLVVASMAGDKVMRIKEKDGKTPEVPRV---RKLT 78 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCC-Ccceeeec--ccc-ceEEEeecCCceeEEEecccCCCCcccee---eccc
Confidence 33444568999999877666666655533 35889999 333 335555 467889999764422223322 2223
Q ss_pred CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1129 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1129 ~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
+. .-.| ++.....-++++||..+.|+|||++... +.+.++.|.+. |+++ .++....+|++++..|.|.|..
T Consensus 79 gd--~~~C----v~~~s~S~y~~sgG~~~~Vkiwdl~~kl-~hr~lkdh~st-vt~v-~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 79 GD--NAFC----VACASQSLYEISGGQSGCVKIWDLRAKL-IHRFLKDHQST-VTYV-DYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred cc--hHHH----HhhhhcceeeeccCcCceeeehhhHHHH-HhhhccCCcce-eEEE-EecCCcceeEEeccCCcEEEEe
Confidence 22 1222 3333445889999999999999999877 78888888765 9999 5667788999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIA 1287 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~La 1287 (1348)
+.++.. ...+ .+ +....|.-+.++|. ....|.+++.+|.|.+||+........-...|..+...++|+|... +|+
T Consensus 150 ~~t~~~-tt~f-~~-~sgqsvRll~ys~s-kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 150 TKTKQK-TTTF-TI-DSGQSVRLLRYSPS-KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred cccCcc-ccce-ec-CCCCeEEEeecccc-cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 998763 3333 12 22356778999998 5667888999999999999977434445567999999999999755 788
Q ss_pred EEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+.|+.|.+||+.. .....+.+ + .+.+.++|.++|.+|++|+..|.|..||
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y--~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTY--S-------HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred EecccceEEEeecccccccceeee--c-------CCcceeeecCCceEEEeecCCceEEEEe
Confidence 899999999999764 33445555 2 5789999999999999999999999986
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=170.90 Aligned_cols=207 Identities=21% Similarity=0.337 Sum_probs=154.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc--------eeEEeeeecccCCCCcccccceEEEEecC-CCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK--------QKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLY 1151 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~--------~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll 1151 (1348)
+.|.++... ...|.++++|+.||.|.+||+...... ...+.....-.+|.-.|.+ +.|-|- .+.+.
T Consensus 44 GsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss----~~WyP~DtGmFt 118 (397)
T KOG4283|consen 44 GSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISS----AIWYPIDTGMFT 118 (397)
T ss_pred Cccceeeec-cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeee----eEEeeecCceee
Confidence 788998884 357899999999999999999653211 1111111223456666666 778775 45566
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe--cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1152 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS--QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1152 ~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~--s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++.|.+++|||.++-+ ....++... .|.+-++. ....-++++|..|-.|++.|+.++. ...+ +.||.+.|
T Consensus 119 ssSFDhtlKVWDtnTlQ-~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~---LsGHr~~v 191 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQ-EAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHT---LSGHRDGV 191 (397)
T ss_pred cccccceEEEeecccce-eeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceee---eccccCce
Confidence 66799999999999987 666665422 24443211 1124578889999999999999998 4443 45788999
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe--------------cCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--------------AHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--------------~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
.++.|+|. ..-.|++|+.||.|++||+|....+...+. .|.+.+.+++|..+|.++++.+.|..+
T Consensus 192 laV~Wsp~-~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 192 LAVEWSPS-SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred EEEEeccC-ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 99999998 566789999999999999986533444443 456789999999999999999999999
Q ss_pred EEEEc
Q 000697 1296 KVFSL 1300 (1348)
Q Consensus 1296 ~Vwd~ 1300 (1348)
++|+.
T Consensus 271 r~wn~ 275 (397)
T KOG4283|consen 271 RVWNM 275 (397)
T ss_pred EEeec
Confidence 99994
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=186.29 Aligned_cols=258 Identities=16% Similarity=0.234 Sum_probs=187.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
.|.+.|..+.|-|-+..|++++.|.++++||+++++++.. +.+|. ..|.+++|. ..+...+++|+.||.|.|||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~---~SvkS~cf~-~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT---GSVKSECFM-PTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc---cccchhhhc-cCCCcceeeccCCCcEEEEE
Confidence 4668899999999667999999999999999999888776 88999 899999996 35778999999999999999
Q ss_pred ccCCCC--cee------------------EEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCce
Q 000697 1111 DYDQKD--KQK------------------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQ 1169 (1348)
Q Consensus 1111 l~~~~~--~~~------------------lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~IrVWDl~t~~~ 1169 (1348)
+..... ..+ +....+.-..+...+.+... +.+.+|+..|+++|. |+.|+|||+++..
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~- 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT-VVLFKDESTLASAGAADSTIKVWDLRKNY- 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE-EEEEeccceeeeccCCCcceEEEeecccc-
Confidence 864220 000 00001112223344444333 444568888998875 9999999999865
Q ss_pred eeee--------ecCC--CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCC
Q 000697 1170 MVNP--------IPSS--SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1170 ~v~~--------l~~~--~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
+... +..+ ....++++ ..+..|.++.+.+.|+.|..|+++.... .+..+..+.. ...-..-..+|+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL-~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd- 328 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNL-ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPD- 328 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEE-EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCC-
Confidence 3221 2222 12247888 5666788888888999999999996541 1221111110 111223345788
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
+.++++|+.|+...+|.+.+...+...+.+|.-.|++++|.|... -+++++.|..++||++
T Consensus 329 -~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 329 -DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred -CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 999999999999999999988788888999999999999988532 3555599999999995
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=174.80 Aligned_cols=245 Identities=18% Similarity=0.337 Sum_probs=176.5
Q ss_pred CCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCC----------------CcEEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000697 1034 FEKGTKTALLQPFS--PIVVAADENERIKIWNYEE----------------DTLLNSFDNHDFPDKGISKLCLVNELDVS 1095 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg--~~Latgs~dg~I~VWd~~t----------------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~ 1095 (1348)
|.++++-+.-++.+ .+.++-++.|.|.|||+.. .+.+.++.+|. ..=.+|+|+| -...
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---~EGy~LdWSp-~~~g 225 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---GEGYGLDWSP-IKTG 225 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---ccceeeeccc-cccc
Confidence 33455555555544 4666677899999999752 24567788888 6778999954 2445
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-EEEEECCCeEEEEECCCCc--eeee
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQ--QMVN 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~-Ll~gg~Dg~IrVWDl~t~~--~~v~ 1172 (1348)
.|++|..-+.|++|...+ +.... .-+.+.+|+..|.. ++|+|.... +++++.||+|+|||++.+. .++.
T Consensus 226 ~LlsGDc~~~I~lw~~~~--g~W~v--d~~Pf~gH~~SVED----LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPST--GSWKV--DQRPFTGHTKSVED----LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ccccCccccceEeeeecc--Cceee--cCccccccccchhh----hccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 688898889999999876 33321 22456789999999 999997655 5556799999999999873 1444
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
+ +.|.. .|+-| .++....+|++|+.||+++|||+|.-+. .+. .++.|+.+|++|.|+|. ....|++++.|.
T Consensus 298 ~-kAh~s-DVNVI-SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA---~fk~Hk~pItsieW~p~-e~s~iaasg~D~ 370 (440)
T KOG0302|consen 298 T-KAHNS-DVNVI-SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA---TFKYHKAPITSIEWHPH-EDSVIAASGEDN 370 (440)
T ss_pred e-eccCC-ceeeE-EccCCcceeeecCCCceEEEEEhhhccCCCcce---eEEeccCCeeEEEeccc-cCceEEeccCCC
Confidence 3 55655 49999 5555566999999999999999996542 333 34467899999999998 788899999999
Q ss_pred cEEEEEcCCCCc---------------ceEEEecC--CCCeEEEEEeCCCC-EEEEEeCCCcEEEE
Q 000697 1251 DIQFLDIRNHKD---------------AYLTIDAH--RGSLSALAVHRHAP-IIASGSAKQLIKVF 1298 (1348)
Q Consensus 1251 ~I~IWDlr~~~~---------------~v~t~~~h--~~~VtsLa~spdg~-~LasgS~Dg~I~Vw 1298 (1348)
.|.+||+.-... +-+-+-.| ...+..+.||+.-+ ++++.+.|| +.||
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999864311 00111123 34688899999765 777777777 4444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-16 Score=168.38 Aligned_cols=282 Identities=18% Similarity=0.294 Sum_probs=204.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEEe-----eCCCCEEEE
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVN-----ELDVSLLLV 1099 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------------~~l~~~~~h~~~~~~ItsL~f~n-----s~d~~~L~t 1099 (1348)
-...+.|+|||..|++-+.|..+++|++... +...+++- ..+..|..-+|.. .|+..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccceeee
Confidence 4567899999999999999999999987421 11111211 2235677777741 367789999
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECC-CCcee-eee-e--
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-KEQQM-VNP-I-- 1174 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~-t~~~~-v~~-l-- 1174 (1348)
.+.+.-|++||..+ |+.+. +++. -+|...+.. +.+++|++||.+|++| ..+.|+++|+. .+..+ +.. +
T Consensus 129 ssr~~PIh~wdaft--G~lra--Sy~~-ydh~de~ta-AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFT--GKLRA--SYRA-YDHQDEYTA-AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ccccCceeeeeccc--ccccc--chhh-hhhHHhhhh-heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999987 44332 2222 345555554 4469999999999876 56789999994 33311 111 1
Q ss_pred -cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcE
Q 000697 1175 -PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDI 1252 (1348)
Q Consensus 1175 -~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I 1252 (1348)
+....+.|.++++.+.+...++.|+....+-||.-..... ... ..+|.+.|+.++|.++ |+.|.+|.. |-.|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~l---lggh~gGvThL~~~ed--Gn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQL---LGGHGGGVTHLQWCED--GNKLFSGARKDDKI 275 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eee---ecccCCCeeeEEeccC--cCeecccccCCCeE
Confidence 1122344777755555667999999999988887776663 332 2378899999999999 889998885 6789
Q ss_pred EEEEcCCCCcceEEEecCCC-CeE--EEEEeCCCCEEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEE
Q 000697 1253 QFLDIRNHKDAYLTIDAHRG-SLS--ALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1253 ~IWDlr~~~~~v~t~~~h~~-~Vt--sLa~spdg~~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
-.||+|..+.++..+..|.+ .=. -+...|++++|++|+.||.|++||+. |+.+..+.. ++ ..++.++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-~s-------d~vNgvs 347 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-YS-------DTVNGVS 347 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-cc-------cccccee
Confidence 99999988788888887765 222 34567889999999999999999965 565666655 44 7899999
Q ss_pred EeCCCCEEEEEECC
Q 000697 1328 FHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1328 fspdg~~Latgs~D 1341 (1348)
++|--.++||++..
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99998888887643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=169.31 Aligned_cols=255 Identities=13% Similarity=0.164 Sum_probs=174.9
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
..+++|. +.|++++| +.||++|+|++.|++|+||++.+-..+. ..+.+.--.. + -...+.|.||...+
T Consensus 80 ~~LKgH~---~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~e--Hr~~R~nve~-d----hpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 80 SVLKGHK---KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKE--HRCIRQNVEY-D----HPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhccC---CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhh--hhHhhccccC-C----CceEEEECCCcceE
Confidence 3578888 89999999 7899999999999999999997621111 1011111000 1 12238899998888
Q ss_pred EEEE-CCCeEEEEECCCCce---eee-------eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1151 YASG-EVSSIMLWDLEKEQQ---MVN-------PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1151 l~gg-~Dg~IrVWDl~t~~~---~v~-------~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
++.. ...++++|-+.+.+. ... .+...+...|.++ -...++.++++++.|..|.+||++ ++ ....+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i-GiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~i 224 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI-GIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSI 224 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEE-eecCCceEEEEecCCCcEEEEecC-Cc-eeeee
Confidence 7775 456799997654320 000 1222223335555 334567899999999999999999 44 44444
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-------cceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1220 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-------~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
.+.. ..-+..+++|+ |+++++++..-.|++|.+--.+ ..+..+++|...|..++|+++...+++.|.|
T Consensus 225 dtnq---~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 225 DTNQ---SSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred cccc---ccccceeeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 3332 45567889999 9999999999999999975322 3456788999999999999999999999999
Q ss_pred CcEEEEEcC-----CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1293 QLIKVFSLE-----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1293 g~I~Vwd~~-----g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
|+++|||++ ++....++. -..+.....+.-..++.+|.|..||.+. ...+++|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~-g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKE-GSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CcEEEeeccceEecCCCchHhhc-CCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 999999964 222233332 2122222334445899999999998764 3355554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=180.01 Aligned_cols=237 Identities=22% Similarity=0.324 Sum_probs=188.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEEECCCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~gg~Dg~I 1159 (1348)
..|++++| +.+.+.|+.+-.||.|.||++... --.+. .+.++. ..|.+ ++|. +++.|++.+.+|.|
T Consensus 26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~-----vi~g~~drsIE~----L~W~-e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNN-WFLEP-----VIHGPEDRSIES----LAWA-EGGRLFSSGLSGSI 92 (691)
T ss_pred cceEEEEE--eccCCceeeeccCCcEEEEccCCC-ceeeE-----EEecCCCCceee----EEEc-cCCeEEeecCCceE
Confidence 68999999 678888999999999999999661 11222 244443 34445 8998 78999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~ 1239 (1348)
.-||+.+.+ ....+....+. |+++ +..+.+..++.||.||.+..++...++ +. ....+...++.|.+++|+|+
T Consensus 93 ~EwDl~~lk-~~~~~d~~gg~-IWsi-ai~p~~~~l~IgcddGvl~~~s~~p~~-I~-~~r~l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 93 TEWDLHTLK-QKYNIDSNGGA-IWSI-AINPENTILAIGCDDGVLYDFSIGPDK-IT-YKRSLMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred EEEecccCc-eeEEecCCCcc-eeEE-EeCCccceEEeecCCceEEEEecCCce-EE-EEeecccccceEEEEEecCC--
Confidence 999999998 77777765554 9999 677888999999999977777777665 22 22234445689999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCCcceEEEec--------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDA--------HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~--------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
+..+++|+.||.|++||...+ ..+..... ...-|+++.|-.+ ..|++|...|+|++|| ..|..+..++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh
Confidence 999999999999999999987 34442211 1224677777744 4889999999999999 77888888888
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
|. +.|.+++..+++.+++++|.|+.|.-|
T Consensus 244 -h~-------adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 244 -HD-------ADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred -hh-------cceeEEEEcCCCCeEEEccCCCceEEE
Confidence 66 889999999999999999999988655
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=177.32 Aligned_cols=259 Identities=18% Similarity=0.238 Sum_probs=192.0
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-Ce
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GY 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~ 1149 (1348)
..++.+. ++|++++|.+..+.+++++|..-|.|-+||+....... ..+..+..|..+|.+ +.|+|.+ ..
T Consensus 180 ~v~kv~~---~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---d~v~~f~~hs~~Vs~----l~F~P~n~s~ 249 (498)
T KOG4328|consen 180 NVAKVTD---RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---DGVYLFTPHSGPVSG----LKFSPANTSQ 249 (498)
T ss_pred ceeEecc---cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---CceEEeccCCccccc----eEecCCChhh
Confidence 3445555 79999999766666899999999999999995321111 122457889999998 8888764 57
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~-~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
+++++.||+|+.-|+++.. ....+.... ...+.++ -++.+...+++|..=|...+||+|++......+ .-|+..
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~-d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~---~lh~kK 324 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSL-DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL---RLHKKK 324 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeec-cccCCCccEEEeecccceEEEEeecCCccchhh---hhhhcc
Confidence 8888999999999999865 222222211 2224444 455566677777777899999999887544433 345679
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC----
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE---- 1301 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~---- 1301 (1348)
|++++++|. ...+|++|+.|++++|||+|... .++.....|...|.+..|+|.+..|+|.+.|..|+|||..
T Consensus 325 I~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 325 ITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 999999998 77899999999999999999642 2344455699999999999998889999999999999952
Q ss_pred -CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 -g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+..|. |..+.+++..+ ...+|+|+..++++|-.-..|-|||
T Consensus 404 ~~~p~~~I~--Hn~~t~RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 404 KDEPLGTIP--HNNRTGRWLTP-FKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCccceee--ccCcccccccc-hhheeCCCccEEEEeccCcceeEEc
Confidence 23334443 66555555444 4567999999999998777777765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=178.01 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=200.8
Q ss_pred CCeEEEEEcCCCCEEEEE--ECCCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1036 KGTKTALLQPFSPIVVAA--DENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latg--s~dg~I~VWd~~t--~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
-++.++.|+.... |+++ +.|..+++|.-.. ++....-+... ..-.|+.. .....++++||..|.|+|||+
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g---d~~~Cv~~--~s~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG---DNAFCVAC--ASQSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc---chHHHHhh--hhcceeeeccCcCceeeehhh
Confidence 4588999987765 4444 4677889996432 22211111111 22334443 223479999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ..+ .+.+.+|...|++ +.|+-.+.+|++++..|.|.|..+.++. ...++....+..|.-+.+....
T Consensus 109 ~~----kl~---hr~lkdh~stvt~----v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 109 RA----KLI---HRFLKDHQSTVTY----VDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred HH----HHH---hhhccCCcceeEE----EEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeeccccc
Confidence 54 112 2568899998888 8999899999999999999999999988 6777776656656677555555
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
..+|.+++.+|.|.+||+....+... ....|..+...|+|+|. +..+|++.+.|..|.+||++.. .....+. ..
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~ 250 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRSQ-ASTDRLT-YS 250 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCC-ccceEEEecccceEEEeecccc-cccceee-ec
Confidence 66788899999999999998764332 34568899999999998 7889999999999999999976 4555554 35
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
.+.+.++|.++|.+|++|+..|.|..||+++ .++..+.. |. ..|++++|-+..
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-h~-------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-HD-------ASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-cc-------cceeEEEeeecc
Confidence 6799999999999999999999999999765 45666766 55 679999998764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-15 Score=154.52 Aligned_cols=277 Identities=13% Similarity=0.198 Sum_probs=196.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCC----------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEE----------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t----------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
|..-+++|.+++|++|..+|.|-+..+.+ ...+..+++|+ ++|..++| ...+|++|++ |.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f----~d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAF----HDDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeee----ehhheeeccC-ceEE
Confidence 44556889999999999999999998753 13455678898 89999999 2467777765 9999
Q ss_pred EEeccCCCCceeEEeeeecc-cCC-----CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1108 IWKDYDQKDKQKLVTAFSSI-QGH-----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l-~~h-----~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
-|..........+..-|+.. .-| .+.|+. +-..|..+.++.++.|+.++-||+++++ ..+++++|.+.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINa----m~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDY- 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINA----MWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDY- 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccce----eEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcce-
Confidence 99886522211111111111 112 234444 5567788888888899999999999999 99999999987
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-------CCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-------QQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-------~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
|.++ ........+++|++||++|+||.++.+ .++.+...+ .-..+|.+++.+. .++++|+. ..+.+
T Consensus 159 vH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~e----dWlvCGgG-p~lsl 231 (325)
T KOG0649|consen 159 VHSV-VGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNE----DWLVCGGG-PKLSL 231 (325)
T ss_pred eeee-eecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccC----ceEEecCC-CceeE
Confidence 9999 444456678899999999999999998 555554331 1235788888764 48888764 57999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCC-C
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-V 1333 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~ 1333 (1348)
|.++.. ++..++.. ...+..+.|.. ..+++++..+.|.-|.+.|..-..+...+ ....+..|+..- +
T Consensus 232 whLrss-e~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s--------~~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 232 WHLRSS-ESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVES--------TACYSASWQTSPIK 299 (325)
T ss_pred EeccCC-CceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCc--------cceeeecccCCceE
Confidence 999987 77777763 45677788864 46777777789999999987766665512 234445554333 4
Q ss_pred EEEEEECCCeEEEc
Q 000697 1334 LLAAGSADACVSIH 1347 (1348)
Q Consensus 1334 ~Latgs~Dg~I~IW 1347 (1348)
+|-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 45555556666654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=166.05 Aligned_cols=291 Identities=14% Similarity=0.190 Sum_probs=210.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
.|.++|.++.|+.++.+|++|++|..++||+++.. +.+.... .|. ..|.|++| .....+|++|+.+|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~---SNIF~L~F--~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR---SNIFSLEF--DLENRFLYSGERWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccc---cceEEEEE--ccCCeeEecCCCcce
Confidence 46789999999999999999999999999998742 3333222 233 68999999 677889999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee-eecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN-PIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~-~l~~~~~~~Vts 1184 (1348)
|...|+++ .+...+ ..-....+.|+. +.-+|.++.+++.+.+|.|.+||.+.....+. .+.+.......+
T Consensus 129 VI~HDiEt--~qsi~V---~~~~~~~~~VY~----m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 129 VIKHDIET--KQSIYV---ANENNNRGDVYH----MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred eEeeeccc--ceeeee---ecccCcccceee----cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 99999976 222222 112223346776 77889999999999999999999886541221 223333444566
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC---CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~---~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
+.+.+....+|++.+..|-+.+||+|.....+..... +......-.++.|+|. |+.+++--....-.+||+-..+
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~--G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS--GNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC--CCeehhhhccCCCEEeeeeccc
Confidence 6577777889999999999999999987644332222 2111223367889999 8888887766667788988754
Q ss_pred cceEEEecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC------C------------------ceEEEEecc
Q 000697 1262 DAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE------G------------------EQLGTIRYH 1311 (1348)
Q Consensus 1262 ~~v~t~~~h------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~------g------------------~~l~~i~~~ 1311 (1348)
.++..+... ...+.+++|-.+. -+++|+.+-.|++|.+. | +.+..++
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-- 354 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-- 354 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe--
Confidence 455444411 1357778887654 49999999999999852 1 1122233
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|.+-++.+.|+|+..+|++.+..+.++||+
T Consensus 355 ------GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 ------GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ------cccccccceeecCCcceEeccchhhheeccc
Confidence 4558899999999999999999999999995
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=182.11 Aligned_cols=251 Identities=16% Similarity=0.301 Sum_probs=189.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t--------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|..+|+.++|++-...|++|+.||++.+|+++. -+.+.+|.+|. ++|.|+++ ..++..+++||.||+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v--~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVV--PSNGEHCYSGGIDGT 367 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEe--cCCceEEEeeccCce
Confidence 347899999999999999999999999999942 26788999999 99999999 789999999999999
Q ss_pred EEEEeccCC------CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1106 IRIWKDYDQ------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1106 IrIWdl~~~------~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
|+.|++..+ .....+. ..+.||...++. +++++....|++++.||+++.|+...+. . .++.....
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~---~~l~Ghtdavw~----l~~s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e 438 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLS---GTLLGHTDAVWL----LALSSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKE 438 (577)
T ss_pred eeeeccCCCCCcccccCcchhc---cceeccccceee----eeecccccceeeecCCceEEeeccCCcC-c-cccCCccc
Confidence 999966421 1111122 457889999988 8899999999999999999999988877 4 33333222
Q ss_pred C-CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC--C--CCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1180 C-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH--T--QQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1180 ~-~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~--~--~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
. .-+++.+.+....+.++...-|.--++|...... ...+... . .....+..+.++|. +.+.+++..|+.|++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRF 515 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCC--CCeeEecccCCceec
Confidence 2 1344433333323444444444434444443331 2222111 0 11245778888998 899999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+|..++ .++.....|...++++++.|+|.+|++|+.|+.+++|.+..
T Consensus 516 ~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 516 FDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 999998 89999999999999999999999999999999999999753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=172.27 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=182.1
Q ss_pred CCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCc---EE----------------E--EeeCCCCCCCCeEEEE
Q 000697 1036 KGTKTALLQPF-------SPIVVAADENERIKIWNYEEDT---LL----------------N--SFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1036 ~~I~sl~fspd-------g~~Latgs~dg~I~VWd~~t~~---~l----------------~--~~~~h~~~~~~ItsL~ 1087 (1348)
..+.|++|... |+++|+|.-+..|.|||+.=.. .. + .-++|. ..|.++.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT---davl~Ls 250 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT---DAVLALS 250 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch---HHHHHHH
Confidence 45678887554 5699999999999999986210 00 0 012455 6777888
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEK 1166 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t 1166 (1348)
|. ....+.|++||.|.+|++||+.+ +++.. .+..|...|.+ +.|++... .|++|+.|++|.+.|.+.
T Consensus 251 ~n-~~~~nVLaSgsaD~TV~lWD~~~--g~p~~-----s~~~~~k~Vq~----l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 251 WN-RNFRNVLASGSADKTVKLWDVDT--GKPKS-----SITHHGKKVQT----LEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred hc-cccceeEEecCCCceEEEEEcCC--CCcce-----ehhhcCCceeE----EEecCCCceEEEeccccceEEeeeccC
Confidence 83 45678999999999999999977 55553 36778899988 99988755 577778999999999995
Q ss_pred CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1167 ~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
....-..++. .+.|-.++|.+.....++++..||.|+-+|+|.....+...+ .|.+.|.+++++.. ....++++
T Consensus 319 ~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-TPGLLSTA 392 (463)
T ss_pred ccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-CCcceeec
Confidence 4312233333 334888877777788999999999999999998865666554 56699999999987 67889999
Q ss_pred ECCCcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1247 SQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
+.|+.|++|++.... ..+..-.-.-+...|+++.|+-. ++|.|+..+.++|||+
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 999999999997542 11111111123467888888755 7788888889999994
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=170.75 Aligned_cols=241 Identities=17% Similarity=0.296 Sum_probs=183.2
Q ss_pred CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECC
Q 000697 1078 FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEV 1156 (1348)
Q Consensus 1078 ~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~D 1156 (1348)
+..+.|+++.| +|...+|++|+.||+++||.+..... ..+ +.+.-...++.+ .+|.++|. .++++|..
T Consensus 211 ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N--~~l---qS~~l~~fPi~~----a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 211 PSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVN--PKL---QSIHLEKFPIQK----AEFAPNGHSVIFTSGRR 279 (514)
T ss_pred cCcCCceEEEe--cCCCceEEEecCCCcEEEEEecCccC--hhh---eeeeeccCccce----eeecCCCceEEEecccc
Confidence 34479999999 78999999999999999999965222 223 223333455555 88999998 78888899
Q ss_pred CeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1157 SSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1157 g~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
...+.||+.+.+ ..+....++....+... ..++++++|+..+..|.|.+....+++ .+..++. .+.|..++|+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~F-eVShd~~fia~~G~~G~I~lLhakT~e-li~s~Ki----eG~v~~~~fs 353 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERF-EVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKI----EGVVSDFTFS 353 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhhee-EecCCCCeEEEcccCceEEeehhhhhh-hhheeee----ccEEeeEEEe
Confidence 999999998876 12233334443334554 467899999999999999999998887 5555532 3789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-------CceEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE-------GEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~-~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-------g~~l~~ 1307 (1348)
.+ ++.|++++.+|.|.+||++.. .+++.+....+ .-++++.++++.+||+||..|.|.|||.+ .+++..
T Consensus 354 Sd--sk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 354 SD--SKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred cC--CcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 88 899999999999999999998 78888874322 34677788999999999999999999943 233444
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEEC--CCeEEE
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA--DACVSI 1346 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~--Dg~I~I 1346 (1348)
+.. -...|++|+|++++++||.+|. +..+++
T Consensus 431 ~dN--------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 431 VDN--------LTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhh--------hheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 333 2367999999999999998876 445543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=171.17 Aligned_cols=294 Identities=14% Similarity=0.221 Sum_probs=200.4
Q ss_pred cCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCCe
Q 000697 1032 TRFEKGTKTALLQPFSP---IVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~ 1105 (1348)
..|...|+|+.|-|+.+ ++++|+.|+.|.+|.++.. ..+.++++|. +.++++ . +...+.++ +.|++
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~-----~~~~cv--~-a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC-----KECVCV--V-ARSSVMTCKAADGT 122 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc-----eeEEEE--E-eeeeEEEeeccCce
Confidence 45778999999999887 8999999999999998844 3455566655 455555 2 23333333 78999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeE-EEEECCCeEEEEECCCCc-eeeeeecCCCCCCe
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL-YASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~L-l~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~V 1182 (1348)
+.+||... .+.-+. ..+.-..+.+.. ++++..++ +..+ +.|+.+..|.++.-...+ ..+..+.+|.+. |
T Consensus 123 v~vw~~~~--~e~~~~---~~~rf~~k~~ip--LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DW-I 194 (764)
T KOG1063|consen 123 VSVWDKQQ--DEVFLL---AVLRFEIKEAIP--LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDW-I 194 (764)
T ss_pred EEEeecCC--Cceeee---hheehhhhhHhh--HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchh-h
Confidence 99999843 221122 112211122222 22333343 3333 344567778888655332 156788898887 9
Q ss_pred EEEEEecCCC--CEEEEEeCCCeEEEEECCCCC--------------------eeeEee-------cCCCCCCCCeEEEE
Q 000697 1183 SALTASQVHG--GQLAAGFVDGSVRLYDVRTPD--------------------MLVCST-------RPHTQQVERVVGIS 1233 (1348)
Q Consensus 1183 tsL~~~s~dg--~~LvsGs~DG~VrvwDlr~~~--------------------~~v~~~-------~~~~~h~~~I~sl~ 1233 (1348)
.++++-...+ -++++++.|..||+|.+.-.. .....+ ....||.++|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9996544443 377889999999999886332 000000 12348999999999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCC-c-----ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEE
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHK-D-----AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~-----~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~ 1307 (1348)
|+|. +..|+++|.|.++.+|...+.. - .+....+..+...+..|+|++..+++-+..|-.++|....+..-.
T Consensus 275 W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 275 WHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred Eccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcccee
Confidence 9999 8899999999999999876541 1 111222334568899999999999999999999999833222222
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .+.++|.+.|.+++|+|.|.+|.+.|.|.+-++|
T Consensus 353 ~~----~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 353 QE----PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ec----cccccccccceeeeecCCCCEEEEeccccceeee
Confidence 11 1334577999999999999999999999999886
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=194.31 Aligned_cols=249 Identities=18% Similarity=0.299 Sum_probs=194.4
Q ss_pred CCCeEEEEEcCCCCE----EEEEECCCcEEEEECCC---C---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000697 1035 EKGTKTALLQPFSPI----VVAADENERIKIWNYEE---D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~----Latgs~dg~I~VWd~~t---~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1104 (1348)
..+-+.++|.+.|.. ||.|.+||.|.+||... + ..+.+...|. +.|..+.| |...+++|++|++||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~---G~V~gLDf-N~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT---GPVLGLDF-NPFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC---Cceeeeec-cccCCceeeccCCCC
Confidence 356788999888875 88889999999999764 2 4466778888 89999999 234556999999999
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCC-CCe
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSD-CSI 1182 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~-~~V 1182 (1348)
.|.|||+...+..... . -......|.+ +.|+..-.+|+++ +.+|.+.|||++..+ .+..+..+.. ..+
T Consensus 140 eI~iWDlnn~~tP~~~----~-~~~~~~eI~~----lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTP----G-SQAPPSEIKC----LSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHC 209 (1049)
T ss_pred cEEEeccCCcCCCCCC----C-CCCCcccceE----eccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccce
Confidence 9999999652111110 0 1112344555 9999877766665 577899999999998 7777776555 236
Q ss_pred EEEEEecCCCCEEEEEeCCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1183 SALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG---~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
..+.|.+.+...+++++.|. .|.+||+|.....++++ ++|...|.++.|++. +.+++++++.|+.|.+|+..+
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCC-CchhhhcccCCCCeeEecCCC
Confidence 67755555556666666653 69999999877666644 577899999999998 569999999999999999999
Q ss_pred CCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 000697 1260 HKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1260 ~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g 1302 (1348)
+ +.+..+....+.+..+.|+|... +|++.+-||.|.||.+.+
T Consensus 286 g-Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 G-EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred c-eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 8 89999998888999999999887 889999999999999654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-13 Score=158.40 Aligned_cols=287 Identities=26% Similarity=0.494 Sum_probs=215.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeC-CCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASC-NGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~-~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~-DG~IrI 1108 (1348)
..+...+.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ..+..+.+. .+++. .++..+. |+.+.+
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALS-SPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence 4566889999999999999999999999999999876 6777776441 367777775 56676 5555445 999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
|+... ..... ..+..|...+.. ++|++++..+++++. |+.+++|+..... .+..+..|... |.++.
T Consensus 139 ~~~~~---~~~~~---~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~- 205 (466)
T COG2319 139 WDLST---PGKLI---RTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP-VSSLA- 205 (466)
T ss_pred EEecC---CCeEE---EEEecCcccEEE----EEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCc-eEEEE-
Confidence 99854 01111 346778888876 899999988888875 9999999999877 78888876555 99995
Q ss_pred ecCCCC-EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1188 SQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1188 ~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+.+++. .+++++.|+.|++||.+.+. .... ...+|.... ...|+++ +..+++++.|+.+++||.+.....+..
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGK-LLRS--TLSGHSDSV-VSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCc-EEee--ecCCCCcce-eEeECCC--CCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 447887 55555999999999988655 3331 233444554 3389998 688899999999999999976443555
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEe--ccCCcccccccCCeEEEEEeCCCCEEEEE-ECCC
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIR--YHHPSFMAQKIGSVNCLTFHPYQVLLAAG-SADA 1342 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~--~~h~~f~~~~~~~Vtslafspdg~~Latg-s~Dg 1342 (1348)
+..|...+.++.|+|++..+++++.|+.+.+|+... ....... . |. ..+..+.|.+++..++.+ ..|+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HE-------GPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc-cC-------CceEEEEECCCCCEEEEeecCCC
Confidence 567889999999999888888899999999998553 3333333 3 33 478999994332556655 5788
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.+.+|+
T Consensus 352 ~~~~~~ 357 (466)
T COG2319 352 TIRLWD 357 (466)
T ss_pred cEEeee
Confidence 888885
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=162.38 Aligned_cols=294 Identities=15% Similarity=0.264 Sum_probs=209.1
Q ss_pred ccccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED---------TLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~---------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~ 1098 (1348)
.|. ...++.++.|++.+. .|+||+.|..|+||.++.+ +.+..+..|. ..|+++.| +++|++|+
T Consensus 9 ~wH--~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~---~aVN~vRf--~p~gelLA 81 (434)
T KOG1009|consen 9 SWH--DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT---RAVNVVRF--SPDGELLA 81 (434)
T ss_pred Eec--CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc---ceeEEEEE--cCCcCeee
Confidence 355 457899999999887 9999999999999977643 2234566777 89999999 78999999
Q ss_pred EEeCCCeEEEEeccCC-----CC----ceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce
Q 000697 1099 VASCNGNIRIWKDYDQ-----KD----KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1169 (1348)
Q Consensus 1099 tgs~DG~IrIWdl~~~-----~~----~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~ 1169 (1348)
+|+++|.|.+|..... +. ..+.-..++.+.+|...+.. ++|++++..+++++.|..+++||+..++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd----L~Ws~d~~~l~s~s~dns~~l~Dv~~G~- 156 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD----LAWSPDSNFLVSGSVDNSVRLWDVHAGQ- 156 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh----hhccCCCceeeeeeccceEEEEEeccce-
Confidence 9999999999987510 01 01111223667889999998 9999999999999999999999999999
Q ss_pred eeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeE----eecCCCC-----------C----CCCeE
Q 000697 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC----STRPHTQ-----------Q----VERVV 1230 (1348)
Q Consensus 1170 ~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~----~~~~~~~-----------h----~~~I~ 1230 (1348)
....+..|... |..+ .+.+.++++++-+.|...+.+++........ .+....+ | ..-..
T Consensus 157 l~~~~~dh~~y-vqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHY-VQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccc-ccee-ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 77777777665 8888 6778899999988888777777664431110 1101001 1 12345
Q ss_pred EEEEecCCCCCEEEEEEC----CCc-----EEEEEcCCCCcceEEEecCCCCeEEEEEeC------------------CC
Q 000697 1231 GISFQPGLDPAKIVSASQ----AGD-----IQFLDIRNHKDAYLTIDAHRGSLSALAVHR------------------HA 1283 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~----DG~-----I~IWDlr~~~~~v~t~~~h~~~VtsLa~sp------------------dg 1283 (1348)
.++|+|+ |..+++.+. .|. ..+|+-.....+...+.........+.++| .+
T Consensus 235 RlsfTPd--G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPD--GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCC--CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 7788998 888887642 222 345554443455555555555555555543 44
Q ss_pred CEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1284 PIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.++|.++.+ .|.|||... .++..+.. -|-..|+.++|+++|.+|+..|.||...+
T Consensus 313 lvfaiAt~~-svyvydtq~~~P~~~v~n-------ihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 313 LVFAIATKN-SVYVYDTQTLEPLAVVDN-------IHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEEeecc-eEEEeccccccceEEEee-------eeeeeecceeecCCCcEEEEeccCCceEE
Confidence 466777664 799999543 44444333 13378999999999999999999997653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=160.36 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=183.1
Q ss_pred eEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE
Q 000697 1083 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1348)
Q Consensus 1083 ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW 1162 (1348)
-.|+.| ++.|.+|++|+.||.|.|||+.+ .. .. +.+.+|..+|.+ ++|+++|..|++++.|..|.+|
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T--~~--ia---r~lsaH~~pi~s----l~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDT--FR--IA---RMLSAHVRPITS----LCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccc--cc--hh---hhhhccccceeE----EEecCCCCEeeeecCCceeEEE
Confidence 578899 78999999999999999999976 11 11 567899999988 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000697 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1163 Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~ 1242 (1348)
|+..+. +++.+.. +++|+...+.+.+.+.+++.-.+..-.+-++..+...+-.......-...-.+..|++. |++
T Consensus 93 Dl~~gs-~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~y 167 (405)
T KOG1273|consen 93 DLLKGS-PLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKY 167 (405)
T ss_pred eccCCC-ceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC--CCE
Confidence 999999 9988876 45688887777777887777666666666666543222111111111112223357777 999
Q ss_pred EEEEECCCcEEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE----EEEeccCCcccc
Q 000697 1243 IVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL----GTIRYHHPSFMA 1317 (1348)
Q Consensus 1243 LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l----~~i~~~h~~f~~ 1317 (1348)
+++|...|.+.++|..+. +++..++... ..|..+.++..|++|+..+.|+.|+.|++..-.. ......|. +..
T Consensus 168 IitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qD 245 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQD 245 (405)
T ss_pred EEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH-HHH
Confidence 999999999999999998 8888888665 7899999999999999999999999999541100 01110010 000
Q ss_pred -cccCCeEEEEEeCCCCEEEEEEC-CCeEEEcC
Q 000697 1318 -QKIGSVNCLTFHPYQVLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1318 -~~~~~Vtslafspdg~~Latgs~-Dg~I~IWd 1348 (1348)
-+.-.-.+++|+.+|.++++|+. -..++||.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 11223467899999999988876 56788883
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=160.99 Aligned_cols=290 Identities=15% Similarity=0.200 Sum_probs=206.9
Q ss_pred CCCCCeEEEEEcC----CCC-EEEEEECCCcEEEEECCCCc---EEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEeC
Q 000697 1033 RFEKGTKTALLQP----FSP-IVVAADENERIKIWNYEEDT---LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVASC 1102 (1348)
Q Consensus 1033 ~~~~~I~sl~fsp----dg~-~Latgs~dg~I~VWd~~t~~---~l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs~ 1102 (1348)
.++.+|..++|++ ++. .+++++ ...+.+|...... .++++...+ .......++|+... ...++++||.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d-~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADED-HDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCC-CCcceEEEEEEecCCCCCeeEEeecc
Confidence 4557889999985 233 555555 6689999876433 333333321 12566777775332 2458999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSS 1178 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~---~~~ 1178 (1348)
-|.|+|.|+.. + ++. +.+.+|...|+. +.++|+.. ++++++.|..||+||++++. |+..+- +|.
T Consensus 114 ~GvIrVid~~~--~--~~~---~~~~ghG~sINe----ik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHr 181 (385)
T KOG1034|consen 114 LGVIRVIDVVS--G--QCS---KNYRGHGGSINE----IKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHR 181 (385)
T ss_pred eeEEEEEecch--h--hhc---cceeccCccchh----hhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEeccccccc
Confidence 99999999965 2 222 557899999998 78888764 56667899999999999999 998875 455
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe------------------------eeEeecCCCCCCCCeEEEEE
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM------------------------LVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~------------------------~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
+. |.++ -++.+|..|++++.|.++++|++...+- ....+.+-.-|...|.|+.|
T Consensus 182 de-VLSv-D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 182 DE-VLSV-DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred Cc-EEEE-EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 54 9999 6788999999999999999999983320 00011112246677777777
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCc-------------ceEEEecCCCCeEEE--EEeCCCCEEEEEeCCCcEEEEE
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKD-------------AYLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~-------------~v~t~~~h~~~VtsL--a~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
- |+++++-|-++.|..|.....++ .+..+......|+-+ +|.+.+++||.|...|.|.+||
T Consensus 260 ~----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 260 F----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD 335 (385)
T ss_pred H----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence 5 67999999999999998732112 223333334455544 5567789999999999999999
Q ss_pred cCCceE---EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LEGEQL---GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~l---~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.... .++.. + .....|...+|+.++.+|+...+|++|--||
T Consensus 336 L~~~ep~~~ttl~~-s-----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 336 LDNNEPPKCTTLTH-S-----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCCCCccCceEEe-c-----cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 764332 22322 1 2347899999999999999999999998886
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=157.58 Aligned_cols=250 Identities=20% Similarity=0.255 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCC-EEEEEEC----C---CcEEEEECCCC---------cEEEEee-CCCCCCCCeEEEEEEeeCCCCE
Q 000697 1035 EKGTKTALLQPFSP-IVVAADE----N---ERIKIWNYEED---------TLLNSFD-NHDFPDKGISKLCLVNELDVSL 1096 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~-~Latgs~----d---g~I~VWd~~t~---------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~ 1096 (1348)
.+.|..++-+|..+ .|+++.. . ..+.||.+... +++..+. .+- +.|.|+.| .|++..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav---g~i~cvew--~Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV---GKINCVEW--EPNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh---CceeeEEE--cCCCCe
Confidence 46788888888776 4444432 1 24679987643 2233333 222 58999999 778888
Q ss_pred EEEEeCCCeEEEEeccCCCC-ceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeee
Q 000697 1097 LLVASCNGNIRIWKDYDQKD-KQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1097 L~tgs~DG~IrIWdl~~~~~-~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
+++-. |..|.+|++..+.. ..++.. ..-.++....++ -+|+| .++..+++..|+++..||+++.+ +...+
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~fts----g~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI 209 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTS----GAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSI 209 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecc--cccccccceecc----cccCCCCccceEEEeCCCcEEEEEccchh-hhcch
Confidence 88776 77899999977443 222221 111123333334 68988 55666777789999999999988 78888
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
...++..|..+.+.+....+|++|+.||.|++||.|..+..+. ...+|..+|.++.|+|. ....+++|+.|..|.+
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCc-cceEEEecCCCceeEE
Confidence 8777777999965555566889999999999999998876665 44578899999999998 6788999999999999
Q ss_pred EEcCCCC----------------------------cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1255 LDIRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1255 WDlr~~~----------------------------~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
|....-. ..+.++..|++.|.+++|+.-.+ ++|+-|.||++.|=++.
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9754211 13457778999999999998777 56778999999876543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-14 Score=152.04 Aligned_cols=292 Identities=15% Similarity=0.207 Sum_probs=199.4
Q ss_pred CCCeEEEEEcC--CC-CEEEEEE----CCCcEEEEEC--CCCcEEEEe-eCCCCCCCCeEEEEEEeeCCC---CEEEEEe
Q 000697 1035 EKGTKTALLQP--FS-PIVVAAD----ENERIKIWNY--EEDTLLNSF-DNHDFPDKGISKLCLVNELDV---SLLLVAS 1101 (1348)
Q Consensus 1035 ~~~I~sl~fsp--dg-~~Latgs----~dg~I~VWd~--~t~~~l~~~-~~h~~~~~~ItsL~f~ns~d~---~~L~tgs 1101 (1348)
.-.+.++.|+. +. .+|+.|+ ....|.|-.+ ++++.+..- -.|. -+++.+.|++++.| .+|+|++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCcchhhccc
Confidence 35688888884 33 3788887 3456666644 344444332 1344 68999999765543 3565544
Q ss_pred CCCeEEEEeccCCCCceeEEeee--ecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCce--eeeeecC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAF--SSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQ--MVNPIPS 1176 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~--~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~ 1176 (1348)
+ .+|+|++...+.+.++.... ..-..+..++++ ++|+.-+. +|.+++-|-+..|||++++.. ....+.+
T Consensus 121 D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS----FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 121 D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS----FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred C--eEEEEeccCcCCceehhhhhccCcccccCCcccc----cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 3 69999997543443332111 112234445555 89987655 455567899999999998640 2344556
Q ss_pred CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-CcEEEE
Q 000697 1177 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFL 1255 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G~I~IW 1255 (1348)
|.. .|..+++.....++|++.+.||+||+||+|..+.....++.- ....+...++|++. +-+++++-..| ..|.|.
T Consensus 195 HDK-EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-~~~~pLlRLswnkq-DpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 195 HDK-EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cCc-ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-CCCCcceeeccCcC-CchHHhhhhcCCceEEEE
Confidence 655 499997665556899999999999999999877444444322 22568899999987 77888887665 569999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC-CC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QV 1333 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd-g~ 1333 (1348)
|+|....++..+++|.+.|++++|.|+.. .|++++.|..+.+||+..-....... .-..-...+.|+.+.|++. ..
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeecccCCC
Confidence 99998899999999999999999999855 89999999999999965322111000 0000013478999999954 47
Q ss_pred EEEEEEC
Q 000697 1334 LLAAGSA 1340 (1348)
Q Consensus 1334 ~Latgs~ 1340 (1348)
+++.+..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 8887764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=151.80 Aligned_cols=281 Identities=20% Similarity=0.308 Sum_probs=189.0
Q ss_pred EEEEEE----CCCcEEEEECCCC--cEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-------CeEEEEeccCC
Q 000697 1049 IVVAAD----ENERIKIWNYEED--TLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-------GNIRIWKDYDQ 1114 (1348)
Q Consensus 1049 ~Latgs----~dg~I~VWd~~t~--~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-------G~IrIWdl~~~ 1114 (1348)
.+++|. .|..|.+.+++.+ ... +.|..+. +.|..++-.| .+..+|+|+..+ -.+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~a---gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHA---GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCC---cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 445554 4566777666543 222 2344444 6788887742 355666666542 24789999764
Q ss_pred CCc-----eeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC----CCCeEE
Q 000697 1115 KDK-----QKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS----DCSISA 1184 (1348)
Q Consensus 1115 ~~~-----~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~----~~~Vts 1184 (1348)
.+. .+.+ ..+. .+.+.+.+ +.|.|++..+++-. |..|.+|++......+..+.... ....++
T Consensus 104 ~~~S~~~tlE~v---~~Ldteavg~i~c----vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 104 LGQSNSSTLECV---ASLDTEAVGKINC----VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTS 175 (370)
T ss_pred cCccccchhhHh---hcCCHHHhCceee----EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecc
Confidence 333 1222 2222 34455666 99999888887766 77899999987762244433211 112444
Q ss_pred EEEec-CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1185 LTASQ-VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1185 L~~~s-~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
-+|.+ .+++.+++ ..|+++..||+|+.++... ....|...|..+.|+|+ ...+|++|+.||.|+|||.|+.+.+
T Consensus 176 g~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 176 GAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred cccCCCCccceEEE-eCCCcEEEEEccchhhhcc---hhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCcc
Confidence 43433 35666665 4689999999998774443 33467789999999999 7788999999999999999998899
Q ss_pred eEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEc---CCceEEEE-------ec-----c----CCc---cccccc
Q 000697 1264 YLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFSL---EGEQLGTI-------RY-----H----HPS---FMAQKI 1320 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~---~g~~l~~i-------~~-----~----h~~---f~~~~~ 1320 (1348)
+.++.+|...|.++.|+|. ..++.+|+.|..|.+|.. ..+.-..+ .. . .++ -...|.
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 9999999999999999994 668999999999999972 21110000 00 0 000 012466
Q ss_pred CCeEEEEEeCCCCEE-EEEECCCeEEE
Q 000697 1321 GSVNCLTFHPYQVLL-AAGSADACVSI 1346 (1348)
Q Consensus 1321 ~~Vtslafspdg~~L-atgs~Dg~I~I 1346 (1348)
..|.+++|+.-..++ |+-+.||++.|
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEe
Confidence 899999999888764 56677999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=157.97 Aligned_cols=248 Identities=15% Similarity=0.245 Sum_probs=181.4
Q ss_pred CCCCeEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPF----SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspd----g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
++..-..++|+-+ .++||+|+.-|.|+|.|+.+++....+.+|. ..|+.+.+.+ .+.++++++|.|..||+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p-~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHP-DRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC---ccchhhhcCC-CCCcEEEEecCCceEEEE
Confidence 3445556666432 4589999999999999999999999999999 8999999953 456899999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-----eeeee---------ec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----QMVNP---------IP 1175 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-----~~v~~---------l~ 1175 (1348)
++.+ . .++.-+..+.+|...|.+ ++|+.++.+|+++|.|.+|++|++...+ ++... ++
T Consensus 164 nI~~--~--~Cv~VfGG~egHrdeVLS----vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 164 NIQT--D--VCVAVFGGVEGHRDEVLS----VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred eccC--C--eEEEEecccccccCcEEE----EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 9966 3 344446778899999888 9999999999999999999999998433 00100 00
Q ss_pred -------------CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC-CCCe---------eeEeecCCCCCCCCe--E
Q 000697 1176 -------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR-TPDM---------LVCSTRPHTQQVERV--V 1230 (1348)
Q Consensus 1176 -------------~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr-~~~~---------~v~~~~~~~~h~~~I--~ 1230 (1348)
.|.. .|.|+.|+ |+++++-+-++.|..|... -.+. ....+..+.-....| .
T Consensus 236 t~~~~fp~fst~diHrn-yVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRN-YVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred ccccccccccccccccc-hHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 1111 24444333 6889998999999999872 1111 111111111112233 3
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc-eEEEec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA-YLTIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~-v~t~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
..+|.|- ++.||.|...|.|.+||++....+ ..++.. ....|...+|+.+|.+|+...+|++|--||
T Consensus 312 rf~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 312 RFAFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEeecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4455676 899999999999999999976432 222222 245799999999999999999999999998
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-14 Score=169.41 Aligned_cols=272 Identities=16% Similarity=0.213 Sum_probs=193.9
Q ss_pred CcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCccc
Q 000697 1057 ERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1135 (1348)
Q Consensus 1057 g~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~ 1135 (1348)
+.+.||+++.. ..-..+... ..|++++|++ .+..+++.|..+|.|.+||+...........+ .....|..++.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeE
Confidence 47999999865 333344433 4899999963 57788999999999999999773332111101 11234566665
Q ss_pred ccceEEEEecCCCe--EEEEECCCeEEEEECCCCceeeeee----cC------CCCCCeEEEEEecCCCCEEEEEeCCCe
Q 000697 1136 CSNVVVDWQQQSGY--LYASGEVSSIMLWDLEKEQQMVNPI----PS------SSDCSISALTASQVHGGQLAAGFVDGS 1203 (1348)
Q Consensus 1136 si~~~v~ws~~~~~--Ll~gg~Dg~IrVWDl~t~~~~v~~l----~~------~~~~~VtsL~~~s~dg~~LvsGs~DG~ 1203 (1348)
. +.|.++... +++++.||.|..|+++.-..++... .. .....++++.+...+.+.|+.|+.+|.
T Consensus 296 ~----vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 296 A----VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred E----EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 5 888776555 9999999999999887543111111 11 223358899888888899999999999
Q ss_pred EEEEECCCCCeee----EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1204 VRLYDVRTPDMLV----CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1204 VrvwDlr~~~~~v----~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
|..-+....+... .....+..|.+.|+++.++|- ....+.+++ |.+|+||.......++..+..+...|++++|
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF-~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF-YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCC-ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 9885444332111 222244567899999999998 344444544 9999999988333788888888888999999
Q ss_pred eCCCC-EEEEEeCCCcEEEEEcC---CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1280 HRHAP-IIASGSAKQLIKVFSLE---GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1280 spdg~-~LasgS~Dg~I~Vwd~~---g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
||..+ +|+++..||.|.+||+. -+++.+.+. + ....+.+.|++.|+.|++|...|++.+|+
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-~-------~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-C-------SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccc-c-------ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 99876 78889999999999954 233444433 2 25677888999999999999999999884
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-12 Score=151.92 Aligned_cols=276 Identities=25% Similarity=0.505 Sum_probs=206.1
Q ss_pred CeEEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEec
Q 000697 1037 GTKTALL-QPFSP-IVVAADE-NERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1037 ~I~sl~f-spdg~-~Latgs~-dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl 1111 (1348)
.+..+.+ ++++. .++..+. |+.+.+|+... ......+..|. ..|.++.| ++++..+++++. |+.+++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS---ESVTSLAF--SPDGKLLASGSSLDGTIKLWDL 185 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc---ccEEEEEE--CCCCCEEEecCCCCCceEEEEc
Confidence 5666666 78887 5555444 99999999998 78888899998 89999999 778888888886 999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeee-eecCCCCCCeEEEEEec
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~-~l~~~~~~~VtsL~~~s 1189 (1348)
.. +... ..+.+|...+.+ ++|++++..++++ +.|+.|++||...+. .+. .+..|... + +..+.
T Consensus 186 ~~--~~~~-----~~~~~~~~~v~~----~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~--~~~~~ 250 (466)
T COG2319 186 RT--GKPL-----STLAGHTDPVSS----LAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDS-V--VSSFS 250 (466)
T ss_pred CC--CceE-----EeeccCCCceEE----EEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcc-e--eEeEC
Confidence 65 2222 335668888887 8899888745555 899999999988777 666 57776665 2 22567
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID- 1268 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~- 1268 (1348)
+++..+++++.|+.+++||.+......... .+|...|.++.|.|. +..+++++.|+.+++||.... .......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 324 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPD--GKLLASGSSDGTVRLWDLETG-KLLSSLTL 324 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCC--CCEEEEeeCCCcEEEEEcCCC-ceEEEeee
Confidence 788889999999999999999776423332 466789999999997 778888999999999999877 4444444
Q ss_pred -cCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCce-EEEEeccCCcccccccCCeEEEEEeCCCCEEEE-EECCCeE
Q 000697 1269 -AHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA-GSADACV 1344 (1348)
Q Consensus 1269 -~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~~g~~-l~~i~~~h~~f~~~~~~~Vtslafspdg~~Lat-gs~Dg~I 1344 (1348)
.|...+..+.+.+++..++.+ ..|+.+.+|+..... ...... . ..+..+.+.+ ...... +..++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-H--------SNVLSVSFSP-DGRVVSSGSTDGTV 394 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-C--------ceEEEEEECC-CCCEEEEecCCCce
Confidence 788789999994332455555 688999999965444 222221 1 2288899988 544444 6779999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
.+|+
T Consensus 395 ~~~~ 398 (466)
T COG2319 395 RLWD 398 (466)
T ss_pred EEEe
Confidence 9985
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-15 Score=178.30 Aligned_cols=272 Identities=17% Similarity=0.278 Sum_probs=209.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|-+.|+|+.|...|.++++|++|..++||..+++.++.+..+|. +.|+.++. +.+..++++++.|..|++|.+.+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc---cccchhcc--chhhhhhhhcccCceEEEEecCC
Confidence 45789999999999999999999999999999999999999999 99999999 67788999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee---eecCCCCCCeEEEEEecC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN---PIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~---~l~~~~~~~VtsL~~~s~ 1190 (1348)
+... ..+.+|++.|++ ++|+|-. +++.||++++||.+-.- .+. ......+..+.++ .+-.
T Consensus 264 --~~pv-----svLrghtgavta----iafsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~-~~~~ 326 (1113)
T KOG0644|consen 264 --GAPV-----SVLRGHTGAVTA----IAFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSI-LFEN 326 (1113)
T ss_pred --CchH-----HHHhccccceee----eccCccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeee-eccc
Confidence 4332 458999999998 8888865 67899999999988222 111 1122223335555 4556
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
.+.-+.+|+.|+.-+.|...... .|...+.-+..+.+ ...+.+++-.+-.+++|++.++ ...+...+|
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd-~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~gh 394 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSD-LSSIVVTARNDHRLCVWNLYTG-QLLHNLMGH 394 (1113)
T ss_pred cccccccccCCcccccchhhHhh----------hhccceEEEecccc-ccccceeeeeeeEeeeeecccc-hhhhhhccc
Confidence 78889999999998888765322 11111222222222 2356777777888999999998 788899999
Q ss_pred CCCeEEEEEeCCCC-EEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1271 RGSLSALAVHRHAP-IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...+..+.+||-.. +..+++.||...||| ..|.++......| +.+..-+|+++|..++....-|.+.|.
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh--------~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH--------GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc--------ceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999999776 455789999999999 5677666544312 567788999999888877777777764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=169.74 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=198.2
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|...+..++.++.. .++++|+.||+|+|||...- +...++.- .++++.++.++ ..++.+++|+.||.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~--~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMC--GNGDQFAVSTKDGS 1121 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEec--cCCCeEEEEcCCCe
Confidence 34566677776655 89999999999999998642 11122332 23688888884 68899999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCc-ccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeec--CCCCC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPG-VRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDC 1180 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~-V~si~~~v~ws~~~--~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~--~~~~~ 1180 (1348)
|++.++.............+....+..+ +.+ ..+|.... ..++.+...+.|..||++... ...+++ ..++.
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~---m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS---MHAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGL 1197 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEE---eecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccccc
Confidence 9999997633333333333333333332 222 12333222 256666788999999998776 444443 33444
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC-CCEEEEEE--CCCcEEEEEc
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD-PAKIVSAS--QAGDIQFLDI 1257 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~-g~~LaSgs--~DG~I~IWDl 1257 (1348)
|+++ +.++.++++++|+..|.+-+||+|-+. .+..+ .+ .+..+|+.+..+|... ....++++ ..+.|.+|++
T Consensus 1198 -vTSi-~idp~~~WlviGts~G~l~lWDLRF~~-~i~sw-~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1198 -VTSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV-PILSW-EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred -eeEE-EecCCceEEEEecCCceEEEEEeecCc-eeecc-cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 9999 778899999999999999999999887 56655 33 3448899999888721 13444444 5788999999
Q ss_pred CCCCcceEEEecCC-------------------CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE------------
Q 000697 1258 RNHKDAYLTIDAHR-------------------GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG------------ 1306 (1348)
Q Consensus 1258 r~~~~~v~t~~~h~-------------------~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~------------ 1306 (1348)
.++ ....++-... -......+...+.++.+|+.|+.|+.||...-...
T Consensus 1273 ~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred ccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 987 4444443220 11223344445679999999999999995322111
Q ss_pred ---------EEec----------------------------cCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1307 ---------TIRY----------------------------HHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ---------~i~~----------------------------~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
.+.+ +.......|..+|+++++.... .+|++++.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0000 0000022466788888876544 6889999999999994
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-14 Score=161.94 Aligned_cols=112 Identities=16% Similarity=0.285 Sum_probs=96.8
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC------cceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEc
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~------~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|+.++|.|- +...|++++.||.|++|.+..++ .+-..+.+|...|+++.|||- ..+|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3567778776 67789999999999999987553 566788899999999999995 558999999999999995
Q ss_pred -CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1301 -EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1301 -~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++....+.+ |. +.|.+++|+|+|+.+|+.+.||+|+||+
T Consensus 708 ~~~~~~~~l~g-Ht-------dqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYSRLVG-HT-------DQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhheecc-Cc-------CceeEEEECCCCcceeeeecCceEEEeC
Confidence 5667777877 65 8999999999999999999999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=151.86 Aligned_cols=287 Identities=17% Similarity=0.210 Sum_probs=194.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~-h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.+.+.++++.|..++. |.+|...|.|.+|++++...+..++. +. ..|+.+.-+ .+..|.+-+.|+.+.+|++
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~---~~it~lq~~---p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR---LFITNLQSI---PNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc---ceeeceeec---CCcchhhcCCCceEEEEEc
Confidence 4557899999987765 88999999999999999888888884 44 678888874 3377899999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceE-EEEecCCC---eEEEE-E--CCCeEEEEECCCCceeeeeecC---CCCCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQQSG---YLYAS-G--EVSSIMLWDLEKEQQMVNPIPS---SSDCS 1181 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~-v~ws~~~~---~Ll~g-g--~Dg~IrVWDl~t~~~~v~~l~~---~~~~~ 1181 (1348)
.. +.... .|.-.+++++++ ....+.++ .++.. + .|- +.+-|..... .+..... ...+.
T Consensus 85 a~--s~~i~--------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~t-qv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 85 AY--SAFIS--------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTT-QVQIADDSERSKLGS 152 (323)
T ss_pred cC--cceEE--------EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccc-eeEccCchhccccCc
Confidence 54 22111 122223332221 01111111 22222 1 111 3333333222 2222221 11223
Q ss_pred eEEEEEecCCCC--EEEEEeCCCeEEEEECCCCCeeeEee------cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1182 ISALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCST------RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1182 VtsL~~~s~dg~--~LvsGs~DG~VrvwDlr~~~~~v~~~------~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
+.|..+...++. ++++|.++|.|.+||+.++...+... .....|+.+|.++.+.+. ...=++|+.+..+.
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLV 230 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccce
Confidence 666642222333 56789999999999999875332211 123467899999999876 55556778888899
Q ss_pred EEEcCCCC---cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1254 FLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1254 IWDlr~~~---~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
.|.+.... ..-.++....-.|..+.+-||++++|+++.|++|+||+ -+...+..+++ |. +.|++++|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hs-------agvn~vAfs 302 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HS-------AGVNAVAFS 302 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hh-------cceeEEEeC
Confidence 99887431 11122333345689999999999999999999999999 67899999999 65 899999999
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 000697 1330 PYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IWd 1348 (1348)
|+..++|+++.|++|.+|+
T Consensus 303 pd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWK 321 (323)
T ss_pred CCCchhhhccCCceEEeee
Confidence 9999999999999999996
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=154.14 Aligned_cols=246 Identities=13% Similarity=0.194 Sum_probs=181.3
Q ss_pred CCeEEEEEc-------CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1036 KGTKTALLQ-------PFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fs-------pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~--~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
..|...+|- |+..++++.+.+.-|.+||.-+|+...++.+-+ ..-..-.+++| ++||..|++|. ...|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F--s~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF--SPDGEQLFAGY-KRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe--cCCCCeEeecc-cceE
Confidence 445555553 566799999999999999999999988877532 11234568999 78999999775 5689
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL 1185 (1348)
+|+|+..........+. +........++..+++|+|... .+++|+....+-||.-.... ++..+.+|.++ |+.+
T Consensus 182 rvFdt~RpGr~c~vy~t---~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gG-vThL 256 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTT---VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGG-VTHL 256 (406)
T ss_pred EEeeccCCCCCCcchhh---hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCC-eeeE
Confidence 99999553333332211 1111222222333489998766 67777788888888877777 78888888776 9999
Q ss_pred EEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1186 TASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.+.++|+.|.+|.. |-.|..||+|....++..+..+.+.+..=.-....|. +++|++|+.||.|++||+...+..+
T Consensus 257 -~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 257 -QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred -EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCCCCcc
Confidence 56688999988876 7789999999877666555444432233333445677 9999999999999999999866788
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
..+..|...++.++++|--+++|+++..
T Consensus 334 sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccccceecCcccceeeeccCc
Confidence 8889999999999999998899988754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=167.33 Aligned_cols=295 Identities=16% Similarity=0.252 Sum_probs=217.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|.++|..+.|+..|..|++|++|..|.+|||..++....|. +|. ..|..-.|++..+...+++++.||.|++=.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~---~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC---NNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc---cchhhhhccCCCCCcCceeccccCceeeee
Confidence 3477999999999999999999999999999999988777665 566 678788898888888999999999999987
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCCC--CCeEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSD--CSISA 1184 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~---~~~~--~~Vts 1184 (1348)
+... +..+-. +.+..|.+.|.. ++..|+.. .++++|.|+.+.-+|++... ....+. .+.. -...+
T Consensus 216 i~~t-~~~e~t---~rl~~h~g~vhk----lav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 216 ILET-GYVENT---KRLAPHEGPVHK----LAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYT 286 (559)
T ss_pred eccc-cceecc---eecccccCccce----eeecCCCCCcccccccccceeeeeeccCC-ccceeeeeccCCccceeeee
Confidence 7542 222222 456778888877 55556654 47778999999999998775 333222 2222 13567
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCee-----eEeecCC---CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDML-----VCSTRPH---TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1256 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~-----v~~~~~~---~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWD 1256 (1348)
++..+.+.+.+++|+.|-.+++||.|.-... +..+..+ ......|++++++.+ +..+.++-.|-.|.++.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC--ccceeeeecccceEEec
Confidence 7555556679999999999999999854321 1111111 122357999999987 66666677777899995
Q ss_pred cCCCC-----------cce-EEEecCCC--CeEEEEE-eCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCccccccc
Q 000697 1257 IRNHK-----------DAY-LTIDAHRG--SLSALAV-HRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1257 lr~~~-----------~~v-~t~~~h~~--~VtsLa~-spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~ 1320 (1348)
-..+. ..+ ..+++|.. .|.++-| -|...++++||.-|.|.||+. +++.+..+++ . .
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg-D-------r 436 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG-D-------R 436 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc-c-------c
Confidence 43221 112 23778854 5667765 567889999999999999994 5555555555 2 2
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|+||.-||.-.+||++|-|..|+||.
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeec
Confidence 4899999999999999999999999994
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=160.65 Aligned_cols=242 Identities=19% Similarity=0.283 Sum_probs=178.6
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY- 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~- 1149 (1348)
..+.+|. +.|.+|.. ++.|.+|++|+.||+||||.+.+ +.+... +. ....|.+ ++|+|.+..
T Consensus 394 lvyrGHt---g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~T--gRcvr~-----~~-~d~~I~~----vaw~P~~~~~ 456 (733)
T KOG0650|consen 394 LVYRGHT---GLVRSISV--DPSGEWLASGSDDGTVRIWEIAT--GRCVRT-----VQ-FDSEIRS----VAWNPLSDLC 456 (733)
T ss_pred eeEeccC---CeEEEEEe--cCCcceeeecCCCCcEEEEEeec--ceEEEE-----Ee-ecceeEE----EEecCCCCce
Confidence 4578888 89999999 78999999999999999999977 433221 11 2335555 899887653
Q ss_pred EEEEECCCeEEEEECCCCc---------------------------------e---eeeeecCCCCCCeEEEEEecCCCC
Q 000697 1150 LYASGEVSSIMLWDLEKEQ---------------------------------Q---MVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~---------------------------------~---~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+++....+.+.|-+..-+. + -+.....| ...|..| .++..|+
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~v-tWHrkGD 534 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQV-TWHRKGD 534 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCcccee-eeecCCc
Confidence 2333333334444322110 0 01111122 3348888 5567899
Q ss_pred EEEEEeCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1194 QLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1194 ~LvsGs~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+|++...+ ..|.|+++.... ... .+....+.|.++.|+|. ..+|++++. ..|+|||+... ..++.+...
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~-sQ~---PF~kskG~vq~v~FHPs--~p~lfVaTq-~~vRiYdL~kq-elvKkL~tg 606 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRK-SQS---PFRKSKGLVQRVKFHPS--KPYLFVATQ-RSVRIYDLSKQ-ELVKKLLTG 606 (733)
T ss_pred eEEEeccCCCcceEEEEeccccc-ccC---chhhcCCceeEEEecCC--CceEEEEec-cceEEEehhHH-HHHHHHhcC
Confidence 99987764 468899987665 222 33333578999999999 888888775 57999999976 777777777
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...|..+++||.|.-|+.|+.|+.+..||+ ..+..++++. |. ..+++++||+.-.++++|+.||++.||
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~-------~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HE-------KAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hh-------hhhhhhhhccccceeeeecCCCcEEEE
Confidence 778999999999999999999999999995 4668888887 65 789999999999999999999999886
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=160.87 Aligned_cols=275 Identities=16% Similarity=0.240 Sum_probs=210.2
Q ss_pred cccCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1030 WDTRF-EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1030 Wd~~~-~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
++... ..++..+.++.+|.+|+.|+..|.|-.+||.++++...+.... .|.++.|. .+..+++++ ....+.|
T Consensus 123 f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~L--Hneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 123 FDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFL--HNEQFFAVA-QKKYVYV 195 (545)
T ss_pred ccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhh--cchHHHHhh-hhceEEE
Confidence 34443 4789999999999999999999999999999999998887766 89999994 566677766 5568999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||... .++ ..+..| ..|.. +.|-|..-.|++++..|.++.-|+.+++ .+..+....+. +..| ..
T Consensus 196 YD~~G----tEl----HClk~~-~~v~r----LeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~-~~vm-~q 259 (545)
T KOG1272|consen 196 YDNNG----TEL----HCLKRH-IRVAR----LEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGR-TDVM-KQ 259 (545)
T ss_pred ecCCC----cEE----eehhhc-Cchhh----hcccchhheeeecccCCceEEEeechhh-hhHHHHccCCc-cchh-hc
Confidence 99743 222 223333 23444 7888877677777899999999999999 99999887665 6667 67
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+|.+..+-+|..+|+|.+|.....+.+++.+ .|.++|.+|++.++ |++++|.+.|..++|||+|+.. .+.++.
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiL----cH~g~V~siAv~~~--G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~ 332 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----CHRGPVSSIAVDRG--GRYMATTGLDRKVKIWDLRNFY-QLHTYR 332 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHH----hcCCCcceEEECCC--CcEEeecccccceeEeeecccc-ccceee
Confidence 7888899999999999999999888776655 46699999999999 9999999999999999999884 444544
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCce--EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
. ......+++|..| +||.| ....|.||. ..+.. -..... |. -.+.|..+.|.|....|..|...|.
T Consensus 333 t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~-----~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HR-----CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred c-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hc-----cCcccccceeccHHHeeeccccCCc
Confidence 3 4467788888655 44444 335799997 44322 111111 22 3358999999999988888766554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=161.20 Aligned_cols=253 Identities=21% Similarity=0.338 Sum_probs=182.3
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
++..|. +.|..+.| .+....|++++.||+|++|++.... .....+...-++.+|.++|.| ++....+.++
T Consensus 289 tl~s~~---d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~----v~v~~n~~~~ 359 (577)
T KOG0642|consen 289 TLRSHD---DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLC----VVVPSNGEHC 359 (577)
T ss_pred eeecch---hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEE----EEecCCceEE
Confidence 455666 78999999 6788899999999999999993311 112223344678899999988 8888999999
Q ss_pred EEEECCCeEEEEECCCCc---------eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC
Q 000697 1151 YASGEVSSIMLWDLEKEQ---------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~---------~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~ 1221 (1348)
++||-||+|+.|++.... .....+.+|.+. |+.+ +++.....|++++.||+|+.|+...... +++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l-~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLL-ALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccc-eeee-eecccccceeeecCCceEEeeccCCcCc--cccCC
Confidence 999999999999654211 123456677666 9999 6777888899999999999999887764 33322
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-------CCCCeEEEEEeCCCCEEEEEeCCCc
Q 000697 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-------HRGSLSALAVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1222 ~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-------h~~~VtsLa~spdg~~LasgS~Dg~ 1294 (1348)
... .+.-.++.+-.. .-...++...-|.-.++|+... ..+..+.. ....+..+.+||.+.+.+++..|+.
T Consensus 436 ~~e-~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKE-HGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred ccc-cCCcceEeeccc-hhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 222 234455555433 1122333333333334444333 22333321 1245788999999999999999999
Q ss_pred EEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+++| .+|+.+..... |. ..++++++.|+|.+|++++.||.|++|+
T Consensus 513 Ir~~dn~~~~~l~s~~a-~~-------~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVA-HK-------DSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eecccccccccchheee-cc-------ceecceeecCCCceEEeecCCceeehhh
Confidence 99999 77888888777 54 7899999999999999999999999995
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=160.37 Aligned_cols=257 Identities=11% Similarity=0.183 Sum_probs=175.4
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE--EEEe----eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL--LNSF----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~--l~~~----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|.+++|+|+.+ +++.|..+|.|.+||+..+.. ...+ ..|. ..++.+.|..+..+.-+++++.||.|..
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~---~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS---EPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC---cCeEEEEEeccCCCCceEEEecCCcEee
Confidence 6899999999876 677778999999999987654 2222 2345 7899999976666677999999999999
Q ss_pred EeccCCCCceeEE-eeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCce-e------eeeecCCCC
Q 000697 1109 WKDYDQKDKQKLV-TAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQ-M------VNPIPSSSD 1179 (1348)
Q Consensus 1109 Wdl~~~~~~~~lv-s~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~-~------v~~l~~~~~ 1179 (1348)
|++.......+.. .......+....-...+++++|.+... .+++|+++|.|..-+....+. . +..+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~- 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI- 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC-
Confidence 9875421111110 000000011111112234588876554 577778899988744333220 1 22333444
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
++|+++.+.+-....|.+++ |.+|++|...........+ ..+...|++++|+|. ....|+++..||.+.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSpt-rpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPT-RPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh---hhccceeeeeEEcCc-CceEEEEEcCCCceehhhhhc
Confidence 45999944433344455554 9999999988433333333 234467999999998 678999999999999999975
Q ss_pred CC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1260 HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1260 ~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.. .++.+...+....+.+.|++.|++|++|...|++.+|++.
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 32 5666666667778888999999999999999999999974
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-11 Score=144.88 Aligned_cols=270 Identities=14% Similarity=0.205 Sum_probs=173.6
Q ss_pred EEEECCCcEEEEECCC-Cc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEeccCCCCceeEEeeeec
Q 000697 1051 VAADENERIKIWNYEE-DT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1051 atgs~dg~I~VWd~~t-~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
++...++.|++||+.+ ++ .+..+... .....+.+ ++++++|++++ .++.|.+|++.. ++....+..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~--- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAE--- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC----CCCccEEE--CCCCCEEEEEECCCCcEEEEEECC-CCceEEeee---
Confidence 3446789999999964 33 44555432 35677888 78999987765 578899999862 344333311
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCc---eeeeeecCCCCCCeEEEEEecCCCCEEE-EEeCC
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLA-AGFVD 1201 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~D 1201 (1348)
.. ...... .+.++++++.+++++ .++.|.+||+.+.. ..+..+... . ...++ .+++++++++ +...+
T Consensus 76 ~~-~~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~-~~~~~-~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 76 SP-LPGSPT----HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-E-GCHSA-NIDPDNRTLWVPCLKE 147 (330)
T ss_pred ec-CCCCce----EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-C-cccEe-EeCCCCCEEEEeeCCC
Confidence 11 111222 388999999999986 58899999997432 022222221 2 24555 4678888775 55567
Q ss_pred CeEEEEECCCCCeeeE----eecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCC---cceEEEecCC--
Q 000697 1202 GSVRLYDVRTPDMLVC----STRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHK---DAYLTIDAHR-- 1271 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~----~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~---~~v~t~~~h~-- 1271 (1348)
+.|.+||+.+...+.. ...... ......+.|+|+ +++++++.. ++.|.+||+.... +.+..+..+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 9999999986432211 011111 244678999999 888877776 8999999997421 2233333221
Q ss_pred ----CCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCe
Q 000697 1272 ----GSLSALAVHRHAPIIASGS-AKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1343 (1348)
Q Consensus 1272 ----~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~ 1343 (1348)
.....+.++|++++++++. .++.|.+|+++ +..+..+ . +.. .......+.|+|+|++|++++. +++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~-~~~----~~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-G-HQP----TETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-E-EEe----ccccCCceEECCCCCEEEEEEccCCc
Confidence 1234688999999888875 47899999963 3322222 2 110 0124567899999999998876 899
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+|+
T Consensus 298 v~v~~ 302 (330)
T PRK11028 298 ISVYE 302 (330)
T ss_pred EEEEE
Confidence 99983
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=152.85 Aligned_cols=265 Identities=14% Similarity=0.165 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEE------eeCCCCEEEEEeCCCeE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV------NELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~------ns~d~~~L~tgs~DG~I 1106 (1348)
++..-+.|+.|+..+..+.+++ |..+.+|.--+...+....... +-|....+. -......++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~---df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPD---DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCc---ccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3445567888998888877777 5555555433222222221111 111111110 01233578888999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.|-+-. ++.+ +.+..|.+.+.+ -.|+++|.-|+++|.||.|++|.... . ++..-.....+|.|++
T Consensus 88 ~il~k~---~rVE-----~sv~AH~~A~~~----gRW~~dGtgLlt~GEDG~iKiWSrsG-M--LRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 88 VILNKS---ARVE-----RSISAHAAAISS----GRWSPDGAGLLTAGEDGVIKIWSRSG-M--LRSTVVQNEESIRCAR 152 (737)
T ss_pred EEeccc---chhh-----hhhhhhhhhhhh----cccCCCCceeeeecCCceEEEEeccc-h--HHHHHhhcCceeEEEE
Confidence 887642 2222 446788888877 89999999999999999999998543 2 3333333445699995
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
|.+...+.+.+.+ |.+.+=.+.....++ . .+.|.+-|.++.|++. .+.+++|++|-..++||-. +..+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i-~---WkAHDGiiL~~~W~~~--s~lI~sgGED~kfKvWD~~--G~~Lf~ 222 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKII-R---WRAHDGLVLSLSWSTQ--SNIIASGGEDFRFKIWDAQ--GANLFT 222 (737)
T ss_pred ECCCCCceEEecC--CeEEEeeccccccee-E---EeccCcEEEEeecCcc--ccceeecCCceeEEeeccc--Cccccc
Confidence 5544444554433 456665555554333 2 3467799999999999 9999999999999999987 457777
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
-..|+.+|++++|.|+ +.++.||.+ +.+ +.. .+.+.|..++|++||..+++|...|.+.+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~~-------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYN-TAR-----------FSS-------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeee-eee-----------ecC-------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 8889999999999999 777777743 232 222 24589999999999999999999887753
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=146.83 Aligned_cols=216 Identities=15% Similarity=0.268 Sum_probs=162.3
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-e
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-Y 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~ 1149 (1348)
-.+.+|. +.|..+.|.+ .++..|++||.|.+|.||++....-...+......+.+|...|-. +.|+|... .
T Consensus 75 P~v~GHt---~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~----V~wHPtA~NV 146 (472)
T KOG0303|consen 75 PLVCGHT---APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL----VQWHPTAPNV 146 (472)
T ss_pred CCccCcc---ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE----Eeecccchhh
Confidence 3467888 8999999964 577899999999999999997643334444445678899988876 99999865 4
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
|+++|.|.+|.+||+.+++ .+.++. |.+- |.++ .++.+|.+|++++.|..|||||.|+++ .+..-..|.|+ .-
T Consensus 147 Llsag~Dn~v~iWnv~tge-ali~l~-hpd~-i~S~-sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~--k~ 219 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGE-ALITLD-HPDM-VYSM-SFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGA--KP 219 (472)
T ss_pred HhhccCCceEEEEeccCCc-eeeecC-CCCe-EEEE-EeccCCceeeeecccceeEEEcCCCCc-EeeecccccCC--Cc
Confidence 6667899999999999999 777777 6665 9999 778899999999999999999999998 55444455443 23
Q ss_pred EEEEEecCCCCCEEEEEE---CCCcEEEEEcCCCCcceE--EEecCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCc
Q 000697 1230 VGISFQPGLDPAKIVSAS---QAGDIQFLDIRNHKDAYL--TIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs---~DG~I~IWDlr~~~~~v~--t~~~h~~~VtsLa~spdg~~L-asgS~Dg~I~Vwd~~g~ 1303 (1348)
..+.|-.+ |.++.+|. .+..+-+||..+..+++. ++.. .+.|.-=-+.++..++ ++|-.|+.|+-|.++.+
T Consensus 220 ~Raifl~~--g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 220 ARAIFLAS--GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEecc--CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44556665 77666654 467799999887655543 3333 3345444567776654 56778999999997766
Q ss_pred e
Q 000697 1304 Q 1304 (1348)
Q Consensus 1304 ~ 1304 (1348)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 5
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-12 Score=146.26 Aligned_cols=277 Identities=16% Similarity=0.272 Sum_probs=197.1
Q ss_pred CCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1034 FEKGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~-Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
+....+.|..+|||+| +|+|...-.|+|||+.+-.+ .|.-|.. ..+..+..+ +.|-..++--..|.+|.+..-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlD--ae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLD--AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeeccc--ccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 4456788999999995 56777899999999975432 3444431 334343333 4565666666777777765542
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .. +.-.|...+..++++.-+.-|+++|....|+-++++.+. .+..+....+. ++++ ..++..
T Consensus 125 G---~h-----------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~~-lN~v-~in~~h 187 (703)
T KOG2321|consen 125 G---RH-----------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSGE-LNVV-SINEEH 187 (703)
T ss_pred C---ee-----------eeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-ccccccccccc-ceee-eecCcc
Confidence 2 10 111222223336676667778888877889999999999 88888876554 8888 566778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCC---CCCC-----CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPH---TQQV-----ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~---~~h~-----~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.+|++|+.||.|..||.|+... +..+... ..|. ..|+++.|+.+ |-.+++|+.+|.|.|||+|.. +++
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~-~pl 263 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRAS-KPL 263 (703)
T ss_pred ceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccC-Cce
Confidence 8999999999999999998763 2222111 1122 34999999987 999999999999999999987 454
Q ss_pred EEE-ecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1265 LTI-DAHRGSLSALAVHRH--APIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1265 ~t~-~~h~~~VtsLa~spd--g~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
..- .+..-+|..+.|.+. +..+++. ....++||| .+|+....+.+ . ..++.+++-|++.++.++-.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t--------~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-T--------SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-c--------CCcCceeeecCCceEEEecC
Confidence 332 233557889999776 4456654 346789999 88999988886 2 45999999999999999987
Q ss_pred CCeEEE
Q 000697 1341 DACVSI 1346 (1348)
Q Consensus 1341 Dg~I~I 1346 (1348)
++.+..
T Consensus 334 ~~~m~~ 339 (703)
T KOG2321|consen 334 SSKMHT 339 (703)
T ss_pred CCccee
Confidence 776544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=138.51 Aligned_cols=235 Identities=25% Similarity=0.320 Sum_probs=170.5
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--CCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--Dg~ 1158 (1348)
..+..+.| .++...|.+|+.|| .++|+.... ++ . .......+. .+-+-|+ ...++..+. -+.
T Consensus 6 ~ti~~~~~--Nqd~~~lsvGs~~G-yk~~~~~~~-~k--~------~~~~~~~~~--IvEmLFS--SSLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 6 PTINFIGF--NQDSTLLSVGSKDG-YKIFSCSPF-EK--C------FSKDTEGVS--IVEMLFS--SSLVAIVSIKQPRK 69 (391)
T ss_pred cceeeeee--ccceeEEEccCCCc-eeEEecCch-HH--h------hcccCCCeE--EEEeecc--cceeEEEecCCCce
Confidence 35666677 78888999999997 577776431 11 0 011111111 1113343 345555543 356
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
+++++.++.. .+..+.-.+ .|.++. . +.+.|++.-.+ .|+|||+++.+ +..++.....+...+.++++++.
T Consensus 70 Lkv~~~Kk~~-~ICe~~fpt--~IL~Vr-m--Nr~RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~- 140 (391)
T KOG2110|consen 70 LKVVHFKKKT-TICEIFFPT--SILAVR-M--NRKRLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNA- 140 (391)
T ss_pred EEEEEcccCc-eEEEEecCC--ceEEEE-E--ccceEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCC-
Confidence 9999999888 777766533 388883 3 34566655544 49999999998 66666665556667777777766
Q ss_pred CCCEEEEEE--CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEE-cCCceEEEEeccCCc
Q 000697 1239 DPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRYHHPS 1314 (1348)
Q Consensus 1239 ~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~-I~Vwd-~~g~~l~~i~~~h~~ 1314 (1348)
+.+++--+ ..|.|.+||..+. +++..+..|++.+-+++|+++|.+||++|..|+ |+||. -+|+.+..++. -.
T Consensus 141 -n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-G~- 216 (391)
T KOG2110|consen 141 -NCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-GT- 216 (391)
T ss_pred -CceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-Cc-
Confidence 66776433 4689999999998 899999999999999999999999999999997 58999 57899988875 21
Q ss_pred ccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
....|.+++||+++++|++.|+.++|+||.
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 235789999999999999999999999973
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-12 Score=141.92 Aligned_cols=193 Identities=20% Similarity=0.231 Sum_probs=144.4
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1139 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1139 ~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
.+++|+.++..+.+++.||++|||+..+.. .+.....|+.. |.++ .++++|..|++-+.| ..+|||.+++.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~e-V~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a-~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAE-VKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALA-R 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCc-cccc-eeCCCCcEEEEecCC-ceEEEEeccCchhh-h
Confidence 358999999999999999999999988777 67777777776 9999 789999999999999 99999999985332 2
Q ss_pred ecCCCCCCCCeEEEEEecCCCC---C--EEEEEECCCcEEEEEcCCCCc----ceEEEecCCCCeEEEEEeCCCCEEEEE
Q 000697 1219 TRPHTQQVERVVGISFQPGLDP---A--KIVSASQAGDIQFLDIRNHKD----AYLTIDAHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g---~--~LaSgs~DG~I~IWDlr~~~~----~v~t~~~h~~~VtsLa~spdg~~Lasg 1289 (1348)
. +..+.......+.|+.+ + . .++....-+.|+.||+..... ..+........|++++++++|+++|.|
T Consensus 223 ~-t~~~k~~~~~~cRF~~d--~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 K-TPFSKDEMFSSCRFSVD--NAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred c-CCcccchhhhhceeccc--CCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2 21233445667788766 3 2 222333446677777664422 122222224479999999999999999
Q ss_pred eCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1290 SAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+.||.|.|++.. -+.+.-++. .|...|+.+.|+|+.+++++.+.|..+.|
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999999954 344444443 25578999999999999999888887765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-11 Score=147.36 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=198.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEE-CC-CC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWN-YE-ED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd-~~-t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
|...+++.++||.++++|+|..||.|.||. .. ++ .....+.=|. ..|+++.| +.+|.+|++||..|.+-+|
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---~~V~~L~f--S~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---DEVNSLSF--SSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc---cccceeEE--ecCCceEeecccceEEEEE
Confidence 345589999999999999999999999994 33 12 3345566677 79999999 7899999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC----------CCC
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----------SSD 1179 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----------~~~ 1179 (1348)
.+.+ ++.+. ++...+.|.. +.+++++....+...|+.|.+....+.. ...++.+ ...
T Consensus 279 q~~T--~~kqf------LPRLgs~I~~----i~vS~ds~~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 279 QLET--GKKQF------LPRLGSPILH----IVVSPDSDLYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred eecC--CCccc------ccccCCeeEE----EEEcCCCCeEEEEecCceEEEEeccchh-hhhhccCccCCCcccccccc
Confidence 9987 33332 4555566666 8889999999999999999998765443 2222221 123
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----C---CCCCCeEEEEEecCCCCCEEEEEEC---
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----T---QQVERVVGISFQPGLDPAKIVSASQ--- 1248 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----~---~h~~~I~sl~~sp~~~g~~LaSgs~--- 1248 (1348)
+-.+.+ ..+|..+.++-.+..|.|.+||+-+.+.+ ..++.. . .+...++.++.+.. |.+++|+-.
T Consensus 346 ~l~t~~-~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d 421 (792)
T KOG1963|consen 346 SLTTGV-SIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARID 421 (792)
T ss_pred ccceeE-EEcCCCCceeecCCCceEEEEecccccee-eeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeeh
Confidence 324455 56676777888889999999999887643 222211 1 12235677777776 889988743
Q ss_pred -----CC--cEEEEEcCCCCc---c-eEEEecCCCCeEEEEEeC-CCC-EEEEEeCCCcEEEEEcCCc-eE------EEE
Q 000697 1249 -----AG--DIQFLDIRNHKD---A-YLTIDAHRGSLSALAVHR-HAP-IIASGSAKQLIKVFSLEGE-QL------GTI 1308 (1348)
Q Consensus 1249 -----DG--~I~IWDlr~~~~---~-v~t~~~h~~~VtsLa~sp-dg~-~LasgS~Dg~I~Vwd~~g~-~l------~~i 1308 (1348)
|| .+|+|-.....+ . ......|...+...++.+ ... .+++++.||.++||-+++. .+ ...
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 33 478997764321 1 123346777666666554 333 7889999999999986321 11 111
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. -.. -|..++++++|+.||..|+.+ .|++|.+||
T Consensus 502 ~~-i~s---y~k~~i~a~~fs~dGslla~s-~~~~Itiwd 536 (792)
T KOG1963|consen 502 KA-IGS---YHKTPITALCFSQDGSLLAVS-FDDTITIWD 536 (792)
T ss_pred ee-eec---cccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence 11 001 145789999999999766655 688999997
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-12 Score=135.58 Aligned_cols=258 Identities=17% Similarity=0.257 Sum_probs=182.6
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeC----CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEE
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASC----NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1141 (1348)
Q Consensus 1067 ~~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~----DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1141 (1348)
++.+..+..+- .+.++.|...++ +.+|+.|+- .+.|.|-.+....++ ++. +.-.+|..+++. +
T Consensus 35 ~~eiy~Y~ap~----~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e--~~~--~a~fd~~YP~tK----~ 102 (364)
T KOG0290|consen 35 RKEIYTYNAPW----PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE--LVE--DANFDHPYPVTK----L 102 (364)
T ss_pred cceEEEecCCC----ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc--eec--cCCCCCCCCccc----e
Confidence 34455555554 678888854343 346777763 456777777653332 221 122467777777 8
Q ss_pred EEecCCC----eEEEEECCCeEEEEECCCCceee---eee----cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 000697 1142 DWQQQSG----YLYASGEVSSIMLWDLEKEQQMV---NPI----PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1348)
Q Consensus 1142 ~ws~~~~----~Ll~gg~Dg~IrVWDl~t~~~~v---~~l----~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr 1210 (1348)
-|.|+.. .+++++. ..+|+|.+..+...+ ..+ ..+...++++..|...+.+++.+.+-|-+..|||+.
T Consensus 103 ~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EecCCccccCcchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 8888763 3454444 469999887533011 111 234456799998888899999999999999999999
Q ss_pred CCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--CCCeEEEEEeCCCC-EE
Q 000697 1211 TPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVHRHAP-II 1286 (1348)
Q Consensus 1211 ~~~~-~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--~~~VtsLa~spdg~-~L 1286 (1348)
++.. .+++ .+-.|...|..++|..+ +.+.|++.+.||.||+||+|......-.++.. ..++..++|++... ++
T Consensus 182 ~~~~~~vkT--QLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 182 TGVSGTVKT--QLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred eccccceee--EEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 8732 1222 23368899999999987 67899999999999999999764333333322 45788899998654 67
Q ss_pred EEEeCC-CcEEEEEc--CCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1287 ASGSAK-QLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1287 asgS~D-g~I~Vwd~--~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
|+-..| ..|.|.|+ ....+..+++ |. +.|++++|.|+. ..|+|+|.|..+.|||
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~-H~-------a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRN-HQ-------ASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhc-Cc-------ccccceEecCCCCceeeecCCcceEEEEe
Confidence 765444 46889995 4677888888 65 899999999987 6899999999999997
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=142.24 Aligned_cols=230 Identities=11% Similarity=0.226 Sum_probs=168.3
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1032 TRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
..|.++|..++|+|..+ .||+|++|.+|.||++-.+ +.+..+.+|. .+|--++|.+ ...+.|+++|.|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---rrVg~V~wHP-tA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---RRVGLVQWHP-TAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---eeEEEEeecc-cchhhHhhccCC
Confidence 56778999999999776 7889999999999998654 4567788999 8999999953 356789999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
.+|.+|++.+ ++.. + .+. |...|.+ +.|+.+|+.+++++.|+.|||||.++++ .+..-.+|.+..-.
T Consensus 154 n~v~iWnv~t--geal-i----~l~-hpd~i~S----~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 154 NTVSIWNVGT--GEAL-I----TLD-HPDMVYS----MSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPA 220 (472)
T ss_pred ceEEEEeccC--Ccee-e----ecC-CCCeEEE----EEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCcc
Confidence 9999999976 4332 2 234 8888887 9999999999999999999999999999 88887777665444
Q ss_pred EEEEecCCCCEEEEEeC---CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1184 ALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~---DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
.. .+-.+|.++.+|+. +..+-+||...-+...... .. ...+.|.---+.++ .+-..++|-.||.|+.|.+...
T Consensus 221 Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-DtSnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 221 RA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-DTSNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ee-EEeccCceeeeccccccccceeccCcccccCcceeE-Ee-ccCCceEEeeecCC-CCEEEEEecCCcceEEEEecCC
Confidence 44 34457777777764 6789999988655332221 22 22356666667887 4445566778999999999876
Q ss_pred CcceEEEec--CCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDA--HRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~--h~~~VtsLa~spd 1282 (1348)
..-++-+.. ...+-+.+.|-|.
T Consensus 297 ~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 297 PPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CceeEEecccccCCcccccccccc
Confidence 222332221 1234455566554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=140.16 Aligned_cols=249 Identities=9% Similarity=0.123 Sum_probs=161.3
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEecc
Q 000697 1036 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDY 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs-~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~ 1112 (1348)
..+..++++|++++|++++ .++.|.+|+++. ++. ....... .......+.| ++++++|++++. ++.|.+|++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~-~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP-LPGSPTHIST--DHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-CCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEEC
Confidence 5677899999999887765 588999999873 332 2221111 1135678888 789998888764 8899999986
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-----eecCCCCCCeEEEE
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN-----PIPSSSDCSISALT 1186 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~-----~l~~~~~~~VtsL~ 1186 (1348)
......+.+ ..+.+ ...... ++++|+++++++++ .++.|.+||+.+.. .+. ......+.....+
T Consensus 111 ~~g~~~~~~---~~~~~-~~~~~~----~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~- 180 (330)
T PRK11028 111 KDGIPVAPI---QIIEG-LEGCHS----ANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHM- 180 (330)
T ss_pred CCCCCCCce---eeccC-CCcccE----eEeCCCCCEEEEeeCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceE-
Confidence 421111111 11221 122233 67899999998876 66999999998643 221 1111122335677
Q ss_pred EecCCCCEEEEEeC-CCeEEEEECCCC--C-eeeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcC
Q 000697 1187 ASQVHGGQLAAGFV-DGSVRLYDVRTP--D-MLVCSTRPHT---QQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIR 1258 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~-DG~VrvwDlr~~--~-~~v~~~~~~~---~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr 1258 (1348)
.+++++++++++.. +++|.+||+... + ..+....... .+......+.++|+ +++++++.. ++.|.+|++.
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd--g~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD--GRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC--CCEEEEecCCCCeEEEEEEe
Confidence 66789999887776 899999999742 2 1222221111 11223456889999 888888754 6889999996
Q ss_pred CCCcc---eEEEecCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC
Q 000697 1259 NHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLE 1301 (1348)
Q Consensus 1259 ~~~~~---v~t~~~h~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~ 1301 (1348)
..... +..+.. ......+.++|+|++|++++. +++|.+|+++
T Consensus 259 ~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 259 EDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 54222 222222 124568899999998887765 8899999864
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=128.91 Aligned_cols=234 Identities=16% Similarity=0.226 Sum_probs=162.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~ 1113 (1348)
..+..+.|+++...|.+|+.|| .++|+.+.-........ .+..|..+-| ...+++..+.+. .+++++...
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~---~~~~IvEmLF----SSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT---EGVSIVEMLF----SSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC---CCeEEEEeec----ccceeEEEecCCCceEEEEEccc
Confidence 4567777999999999999776 57887765443211111 1245666666 456666666543 477777644
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC--CCCCeEEEEEecCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS--SDCSISALTASQVH 1191 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~--~~~~VtsL~~~s~d 1191 (1348)
...-+++. ....|.+ +.++ .+.|++.=.+. |+|||++..+ .+.++..- +...+.++ ..+..
T Consensus 78 ~~~ICe~~--------fpt~IL~----VrmN--r~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~Al-S~n~~ 140 (391)
T KOG2110|consen 78 KTTICEIF--------FPTSILA----VRMN--RKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCAL-SPNNA 140 (391)
T ss_pred CceEEEEe--------cCCceEE----EEEc--cceEEEEEccc-EEEEecccce-eehhhhccCCCccceEee-ccCCC
Confidence 11111111 1223333 4443 45666664443 9999999999 88888754 22235555 44445
Q ss_pred CCEEEEE--eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceEEEe
Q 000697 1192 GGQLAAG--FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1192 g~~LvsG--s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~t~~ 1268 (1348)
+.+++-- ...|.|.+||..+-+ .+..+. .|++.+-+++|+++ |.+||++|..|+ ||||.+.++ +.+..|+
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~---aH~~~lAalafs~~--G~llATASeKGTVIRVf~v~~G-~kl~eFR 213 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQ-PVNTIN---AHKGPLAALAFSPD--GTLLATASEKGTVIRVFSVPEG-QKLYEFR 213 (391)
T ss_pred CceEEecCCCCCceEEEEEcccce-eeeEEE---ecCCceeEEEECCC--CCEEEEeccCceEEEEEEcCCc-cEeeeee
Confidence 5577743 346999999999877 455543 67799999999999 999999999998 899999988 6777776
Q ss_pred cC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1269 AH--RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1269 ~h--~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
-. ...|.+++|||++++|++.|..++|.||.++
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 32 3468899999999999999999999999864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=146.86 Aligned_cols=279 Identities=13% Similarity=0.189 Sum_probs=186.3
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEeccCCCCceeE
Q 000697 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQKL 1120 (1348)
Q Consensus 1042 ~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~~~~~~l 1120 (1348)
.|++|+++++... +..|.||...+|.++..+.+|. ..++++.+.++... .++++++.||.|++||... .++
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~----~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD----GEL 94 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCC----cEE
Confidence 4899999888777 6799999999999999999999 88999998654443 6788999999999999854 333
Q ss_pred EeeeecccCCCCcccccceEEEEecCCCeEEEEECC------------CeEEEEECCCCceeeeee-cCCCCCCeEEEEE
Q 000697 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------------SSIMLWDLEKEQQMVNPI-PSSSDCSISALTA 1187 (1348)
Q Consensus 1121 vs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D------------g~IrVWDl~t~~~~v~~l-~~~~~~~VtsL~~ 1187 (1348)
... +..+ .++....+..++-.....++++..| +.++-+.+.+.......+ ..+.. -.++ .
T Consensus 95 lkt---~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~--~~~I-~ 167 (792)
T KOG1963|consen 95 LKT---FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE--PKSI-V 167 (792)
T ss_pred EEE---EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC--CccE-E
Confidence 322 2111 1111111101111111111122222 222223322221011111 11111 1333 3
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC---CCcce
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN---HKDAY 1264 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~---~~~~v 1264 (1348)
+.+.|...... .+..+.+|+..+........+....|...+++.+++|. ++++++|..||.|.+|.--. .....
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccccccc
Confidence 44555555444 45678888888755333333344567778999999999 99999999999999996432 22455
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
+.+.-|...|++++|+++|.+|.+|+..|.+.+|.+.... .+ |+.+-.++|..+.++||+.+.+....|+.|
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq-------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ-------FLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc-------cccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 6777889999999999999999999999999999965433 22 233345899999999999999999999998
Q ss_pred EE
Q 000697 1345 SI 1346 (1348)
Q Consensus 1345 ~I 1346 (1348)
.+
T Consensus 317 ~l 318 (792)
T KOG1963|consen 317 HL 318 (792)
T ss_pred EE
Confidence 76
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=140.27 Aligned_cols=186 Identities=17% Similarity=0.256 Sum_probs=142.0
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
..++++-..|.|++||..+++ .+..++++... +..+.+.+. .++.+.+++.||+||+||+|...+..+. ...+|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~-~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPAT-TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--SWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCc-ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--eccCCC
Confidence 457777899999999999988 88899887665 677755554 5678999999999999999987643322 222333
Q ss_pred -CCeEEEEEecCCCCCEEEEEEC----CCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1227 -ERVVGISFQPGLDPAKIVSASQ----AGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1227 -~~I~sl~~sp~~~g~~LaSgs~----DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
.+..+++.+-. ++.+++|+. +-.|.+||+|+.++++..+ ..|.+.|+++.|||..+ +|++||.||.|.|||
T Consensus 117 ~~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 56777777655 788888864 5669999999886645544 57999999999999755 999999999999999
Q ss_pred cCCce-----EEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1300 LEGEQ-----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~-----l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
+++.. +.++. +.+.|.++.|+..+ +.+.+-+..+...+|+
T Consensus 195 ~~~d~EeDaL~~viN---------~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 195 TKKDNEEDALLHVIN---------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred cCCCcchhhHHHhhc---------ccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 76541 12221 34679999999888 4577777888888885
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=131.88 Aligned_cols=257 Identities=15% Similarity=0.257 Sum_probs=177.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-c----EEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEEe
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEED-T----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~----~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
.-|.++.|..+|.+|+||+.+|.|.++.-+.. + ....++.|.+. ...|..+.|....+...++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 56899999999999999999999999965432 2 34556677643 2468899997656667888889
Q ss_pred CCCeEEEEeccCCCCcee-----------EE-----------------eeeecc-cCCCCcccccceEEEEecCCCeEEE
Q 000697 1102 CNGNIRIWKDYDQKDKQK-----------LV-----------------TAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~-----------lv-----------------s~~~~l-~~h~~~V~si~~~v~ws~~~~~Ll~ 1152 (1348)
.|.+|++|.+.....+.+ .+ .+.+.+ ..|+.-+.+ +.++.|...+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS----IS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS----ISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee----eeecCccceEee
Confidence 999999999965322210 00 011111 234545555 666666666665
Q ss_pred EECCCeEEEEECCCCce--eeeeecCCCC----CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeE---eecC--
Q 000697 1153 SGEVSSIMLWDLEKEQQ--MVNPIPSSSD----CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC---STRP-- 1221 (1348)
Q Consensus 1153 gg~Dg~IrVWDl~t~~~--~v~~l~~~~~----~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~---~~~~-- 1221 (1348)
.+|=.|.+|+++-..+ .+..++.+.- .-|++-.+.+...++|+-.+..|+|++.|+|...-+-. .+..
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4667799999874431 2333443321 12666656666778999999999999999995431111 1110
Q ss_pred -------CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC---------------CeEEEEE
Q 000697 1222 -------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG---------------SLSALAV 1279 (1348)
Q Consensus 1222 -------~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~---------------~VtsLa~ 1279 (1348)
+.+--..|..+.|+.. |+++++-+. -+|++||+.....++.+++.|.. .-..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~s--GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS--GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC--CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 0111246889999998 999998764 58999999776689999988742 2346789
Q ss_pred eCCCCEEEEEeCCCcEEEEEc
Q 000697 1280 HRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1280 spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
+.++.+++|||....+++|+.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 999999999999999999994
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=131.50 Aligned_cols=230 Identities=14% Similarity=0.212 Sum_probs=172.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..+|+|.+|++|+..+|++.....|.||..... +..++++.|+ ..|++++| .+..+.|++++.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdW--ap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDW--APKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---cceeEEee--cCCCCceeEccCCCCcccccc
Confidence 368999999999999999999999999988754 5678889999 89999999 789999999999999999998
Q ss_pred -cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee--eeeecCCCCCCeEEEEEe
Q 000697 1112 -YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM--VNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1112 -~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~--v~~l~~~~~~~VtsL~~~ 1188 (1348)
....-++.++ +..+....++ +.|+|.++.+++|+..+.|.||-.+.+..- -+.++....+.|+++ .+
T Consensus 85 ~~~~~Wkptlv-----LlRiNrAAt~----V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dW 154 (361)
T KOG1523|consen 85 PSGGTWKPTLV-----LLRINRAATC----VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DW 154 (361)
T ss_pred CCCCeecccee-----EEEeccceee----EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-ec
Confidence 3323334444 4556666666 999999999999999999999988776511 112333334459999 66
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-----CC---------eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRT-----PD---------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~-----~~---------~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
.+++-++++|+.|+..|||..-- .. +.-..+.......++|..+.|+|. |..|+-.+.|+.|.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEE
Confidence 78899999999999999986421 10 000111112234589999999999 999999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
-|.....+.+.+.....-+..++.|-.
T Consensus 233 ~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 233 VDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred eecCCCchhccchhhccCCceeeEeec
Confidence 998866434444443335566666644
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-11 Score=124.96 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=163.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE------EEEeeC--C--CCCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL------LNSFDN--H--DFPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~------l~~~~~--h--~~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
..|+++|+.++|+ +.+|++|+ ||.|+=|.|..... +...+. + ..+--.|+++-. .|..+-+++++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~Ag 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFAG 133 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEec
Confidence 4578999999998 56888887 69999999864321 111111 1 111236888887 56666777777
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-----
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----- 1176 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----- 1176 (1348)
.|+.+.-||+++ |+.+ +.+++|++.+.+ +.--..++.+++|+.||++|+||.++.+ ++..+..
T Consensus 134 GD~~~y~~dlE~--G~i~-----r~~rGHtDYvH~----vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 134 GDGVIYQVDLED--GRIQ-----REYRGHTDYVHS----VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPN 201 (325)
T ss_pred CCeEEEEEEecC--CEEE-----EEEcCCcceeee----eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChh
Confidence 999999999987 6655 448999999988 5554567899999999999999999999 8877653
Q ss_pred ----CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE
Q 000697 1177 ----SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1252 (1348)
Q Consensus 1177 ----~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I 1252 (1348)
+-+.+|.++ ..+.+.+++|+ ...+.+|.+|..+ ..+++ ... ..+..+.|.. +.+++++....|
T Consensus 202 ~lRp~~g~wigal---a~~edWlvCGg-Gp~lslwhLrsse-~t~vf-pip---a~v~~v~F~~----d~vl~~G~g~~v 268 (325)
T KOG0649|consen 202 LLRPDWGKWIGAL---AVNEDWLVCGG-GPKLSLWHLRSSE-STCVF-PIP---ARVHLVDFVD----DCVLIGGEGNHV 268 (325)
T ss_pred hcCcccCceeEEE---eccCceEEecC-CCceeEEeccCCC-ceEEE-ecc---cceeEeeeec----ceEEEeccccce
Confidence 234456666 23567888775 4579999999988 66666 443 6788888864 488888888889
Q ss_pred EEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1253 QFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1253 ~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.-|.+. +.....+.......++..|+-. -+++-.++....+.|+.
T Consensus 269 ~~~~l~--Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTLN--GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeec--cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 999887 3333333333333444444322 23444455555565553
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=137.93 Aligned_cols=260 Identities=14% Similarity=0.170 Sum_probs=183.6
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC--CCceeEEeeeeccc-CCCCcccccceEEEEecCCC
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+.+|. +.|.++.| +.++.+|++|++|..+++|++... ...++.+ .... .|...|.+ ++|...+.
T Consensus 51 D~~~H~---GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI---~~~~~~H~SNIF~----L~F~~~N~ 118 (609)
T KOG4227|consen 51 DVREHT---GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI---GVMEHPHRSNIFS----LEFDLENR 118 (609)
T ss_pred hhhhhc---cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCc---eeccCccccceEE----EEEccCCe
Confidence 355677 89999999 668999999999999999998541 0111111 1111 23344544 99999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
.+++|+.+++|..-|+++.+ .+..+... ..+.|..+ ..+|..+.|++.+.+|.|.+||.|........+ .......
T Consensus 119 ~~~SG~~~~~VI~HDiEt~q-si~V~~~~~~~~~VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQ-SIYVANENNNRGDVYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccce-eeeeecccCcccceeec-ccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCc
Confidence 99999999999999999988 66555432 22358998 566778999999999999999999765322222 1122346
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
....+.|+|. ...+|++++..|-+.+||++....++....+. ...-.++.|+|.|..+.+--....-.+||+-
T Consensus 196 ~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 196 NFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred cceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 7788999998 67889999999999999999765554433222 1223567899999988776555555678866
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+..++..|...---.+..+.+++|..+.. +++|+.+=.|++|.
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 55555555423210112345678888987655 88999999999994
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=144.42 Aligned_cols=245 Identities=18% Similarity=0.231 Sum_probs=171.2
Q ss_pred EcCCCCEEEE--EECCCcEEEEECCCC-cE----EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1043 LQPFSPIVVA--ADENERIKIWNYEED-TL----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1043 fspdg~~Lat--gs~dg~I~VWd~~t~-~~----l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
|+.+...+|+ ++..|.|-||++... ++ +-.+.+ +..|+++.|. .-|...|+++++||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N----gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN----GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc----CceeeecccC-CCChHHeeecccCceEEEEEeccCC
Confidence 4445555554 456899999998753 22 222222 3579999994 3578899999999999999997754
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
......+.-..+..|...|++ +.|+|-. ..|++++.|-+|++||+.+.+ ....+.+|.+. |.++ .|+++|+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~s----lRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdq-If~~-AWSpdGr~ 734 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITS----LRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQ-IFGI-AWSPDGRR 734 (1012)
T ss_pred CCcccCCcceeeecccceEEE----EEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCc-eeEE-EECCCCcc
Confidence 433333444567889988888 8999864 456677899999999999998 88889999887 9999 78999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC----cEEEEEcCCCC-cceEEEec
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG----DIQFLDIRNHK-DAYLTIDA 1269 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG----~I~IWDlr~~~-~~v~t~~~ 1269 (1348)
+++.+.||+|++|..|+++..+..-+.-.+ ..--.|.|--+ |+++++.+.|. .|.+||..+.. .++.+..-
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacd--gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACD--GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEec--CcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999999988765544332222 22335556555 88887776653 48888877542 23332211
Q ss_pred CCC-CeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCc
Q 000697 1270 HRG-SLSALAVHRH-APIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1270 h~~-~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
... .+.--.+.+| +.++++|-.|..|.+|.+..+
T Consensus 811 Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 100 0111123344 347889999999999995443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=133.69 Aligned_cols=253 Identities=12% Similarity=0.235 Sum_probs=178.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--------C--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYE--------E--------DTLLNSFDNHDFPDKGISKLCLVNELDVS 1095 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~--------t--------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~ 1095 (1348)
.+|...|+++.|+|+|++||+|+++|.|.+|... + ....+.+.+|. ..|..++| ++++.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~---~diydL~W--s~d~~ 136 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR---DDIYDLAW--SPDSN 136 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc---cchhhhhc--cCCCc
Confidence 3567889999999999999999999999999765 2 12344566787 89999999 78999
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~ 1175 (1348)
++++|+.|..+++||+.. |... ..+.+|...+.. ++|.|-+.++++-+.|...+++++.... .+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~--G~l~-----~~~~dh~~yvqg----vawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~ 204 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHA--GQLL-----AILDDHEHYVQG----VAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHG 204 (434)
T ss_pred eeeeeeccceEEEEEecc--ceeE-----eeccccccccce----eecchhhhhhhhhccCcccceeeeeeee-eeeeee
Confidence 999999999999999966 4433 347889888888 9999999999988888877777765544 222111
Q ss_pred ---------CCCCCCeEEE------------EEecCCCCEEEEEeC----CC-----eEEEEECCCCCeeeEeecCCCCC
Q 000697 1176 ---------SSSDCSISAL------------TASQVHGGQLAAGFV----DG-----SVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1176 ---------~~~~~~VtsL------------~~~s~dg~~LvsGs~----DG-----~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
.+..+.++.| ..+.|+|.++++... +| ..++|+....+.....+.. -
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~---~ 281 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS---P 281 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC---C
Confidence 1112223333 035678888887642 22 3356655533333322211 2
Q ss_pred CCCeEEEEEecC-------C---------CCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCCEEEE
Q 000697 1226 VERVVGISFQPG-------L---------DPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1226 ~~~I~sl~~sp~-------~---------~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~~Las 1288 (1348)
......+.++|- . -+-.++.++. ..|.+||..+. .++... ..|-..|+.++|+++|.+++.
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~-~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTL-EPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccc-cceEEEeeeeeeeecceeecCCCcEEEE
Confidence 244445555442 0 0334566665 47999999986 555444 458889999999999999999
Q ss_pred EeCCCcEEEEEcCCceEE
Q 000697 1289 GSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~g~~l~ 1306 (1348)
.|.||...+-.+++..+.
T Consensus 360 SS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eccCCceEEEEEcchhcc
Confidence 999999988887765555
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=134.31 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCcEEEEe------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1036 KGTKTALLQPFSP--IVVAADENERIKIWNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fspdg~--~Latgs~dg~I~VWd~~t~~~l~~~------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
..|+.++|.-+++ .|...+.+..+..+..+........ .... ..|..++. .+..|++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~---~~I~gl~~----~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT---KSIKGLKL----ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc---ccccchhh----cCCEEEEEecCCcEE
Confidence 3566777766554 4444446777777777765544432 2233 67888876 446888899999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECC--CeEEEEECCCCceeeeeecCC-------
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEV--SSIMLWDLEKEQQMVNPIPSS------- 1177 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~D--g~IrVWDl~t~~~~v~~l~~~------- 1177 (1348)
+|......-..... ..+..+ ..+.. +.-.+...+|++ ||.. ..+.+||++..+ .+.+-+.-
T Consensus 129 ~~~~k~~d~hss~l---~~la~g-~g~~~----~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKL---IKLATG-PGLYD----VRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL 199 (412)
T ss_pred EEeccCCccccccc---eeeecC-Cceee----eccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc
Confidence 99986422101111 011111 11221 333344555555 6777 789999999876 44432221
Q ss_pred -CCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1178 -SDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1178 -~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
..-+++++.+.+. ....|++++.-+.||+||.+.+..++..+... ...|+++...|+ ++.+++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~--gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPS--GNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCC--CcEEEEecccchhhee
Confidence 1224666744433 16789999999999999999888888877444 488999999999 9999999999999999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|++.+......+.+-.+.|+++..||.++++|+++-|..|+|+|+..
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99988444445888899999999999999999999999999999765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=141.79 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|.++|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+. +|. ..|.+++|.+..+..++++|..|..|+++|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4578999999999999999999999999999999888888875 566 889999999888899999999999999999
Q ss_pred ccCCCCcee---EEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCC------CC-
Q 000697 1111 DYDQKDKQK---LVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSS------SD- 1179 (1348)
Q Consensus 1111 l~~~~~~~~---lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~------~~- 1179 (1348)
+...++... .....+....|...|+. ++-.|++ ..+.+++.||+|+-+|++....|-.....+ ..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKr----ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKR----IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhh----eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 975332211 22233556778888888 4445777 578888999999999998744121111111 00
Q ss_pred -CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-----------------eeEeecCCCCCC-----------CCeE
Q 000697 1180 -CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----------------LVCSTRPHTQQV-----------ERVV 1230 (1348)
Q Consensus 1180 -~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-----------------~v~~~~~~~~h~-----------~~I~ 1230 (1348)
-...|++..+.+..+|++|+.|-..++||.|...+ ++..+. .+|. ..++
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeE
Confidence 12466756666788999999999999999652110 111111 1121 1256
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
-+.|+|+ |..|+..-..-.|.++|+...+
T Consensus 278 ~vtfnpN--GtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPN--GTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEECCC--CcEEEEeeCCeEEEEEeecCCC
Confidence 7888998 7666665555679999988654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=142.85 Aligned_cols=228 Identities=17% Similarity=0.297 Sum_probs=176.5
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|..++| .|||..|+.+..+ .+.+||..+ |.. . +++++|...|.+ ++|+.+|..+++|+.|+.|.+
T Consensus 14 ci~d~af--kPDGsqL~lAAg~-rlliyD~nd--G~l--l---qtLKgHKDtVyc----VAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSD--GTL--L---QPLKGHKDTVYC----VAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEE--CCCCceEEEecCC-EEEEEeCCC--ccc--c---cccccccceEEE----EEEccCCceeccCCCceeEEE
Confidence 6899999 7899988887665 689999866 432 2 568999999998 999999999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
|.-.-+- .++-.++..|.|+ .++|-...+++++-+ ..-+|...... +...+ ....+.+++|..+ |.
T Consensus 80 W~~klEG----~LkYSH~D~IQCM-sFNP~~h~LasCsLs-dFglWS~~qK~--V~K~k----ss~R~~~CsWtnD--Gq 145 (1081)
T KOG1538|consen 80 WTSKLEG----ILKYSHNDAIQCM-SFNPITHQLASCSLS-DFGLWSPEQKS--VSKHK----SSSRIICCSWTND--GQ 145 (1081)
T ss_pred ecccccc----eeeeccCCeeeEe-ecCchHHHhhhcchh-hccccChhhhh--HHhhh----hheeEEEeeecCC--Cc
Confidence 9865444 3333334449999 778888888887654 46688766443 22111 1367889999998 99
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEe---cCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCceEEEEeccCC
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTID---AHRGSLSALAVHRHA-----PIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~---~h~~~VtsLa~spdg-----~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~ 1313 (1348)
+++.|-.||+|.+-+-.. ++...+. +...+|.+++|+|.. ..+++....+++.+|.++|+.+..-+. -.
T Consensus 146 ylalG~~nGTIsiRNk~g--Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~ 222 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNKNG--EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA-LN 222 (1081)
T ss_pred EEEEeccCceEEeecCCC--CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc-CC
Confidence 999999999999986543 3333333 357799999999963 389999999999999999988875443 22
Q ss_pred cccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1314 ~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-...|+++.++|.++..||.|+.+++|
T Consensus 223 -------FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 223 -------FDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred -------CCchhheeccCCcEEEEccCCCceEEE
Confidence 235789999999999999999999887
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-11 Score=144.48 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=160.3
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
+..|.|||.+... ...+..+. ..+.+..| ++||+.|+.++.+ ..|.+||+.+ ++.+.+ ..+.++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l---~~~~g~~- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS---QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRS--GARKVV---ASFRGHN- 250 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC---CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCC--CceEEE---ecCCCcc-
Confidence 5789999987444 45566666 67899999 8899999887654 4699999865 443333 2233332
Q ss_pred cccccceEEEEecCCCeEEEEE-CCCeEEEE--ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeEEEEE
Q 000697 1133 GVRCSNVVVDWQQQSGYLYASG-EVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYD 1208 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVW--Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~VrvwD 1208 (1348)
.. .+|+|++..|+.++ .+|.+.|| |+.++. ...+..+... +.+. .++++|+.++.++ .+|...+|+
T Consensus 251 --~~----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~-~~~~-~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 251 --GA----PAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGN-NTEP-SWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --Cc----eeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCC-cCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 23 78999999888875 67765554 666655 4445544333 6677 6788999777655 578888988
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
+.......... .. .. .+..|+|+ |+.|+.++.++ +.+||+.++ ... .+..+ .....+.|+|+|++|+.
T Consensus 321 ~~~~~~~~~~l-~~---~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 321 MSASGGGASLV-GG---RG--YSAQISAD--GKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIY 388 (429)
T ss_pred EECCCCCeEEe-cC---CC--CCccCCCC--CCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEE
Confidence 76433222322 22 22 45789999 88988887765 556999876 332 22222 12356789999999999
Q ss_pred EeCCCcEEEEE---cCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1289 GSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1289 gS~Dg~I~Vwd---~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
++.++.+.+|+ .+|+.+..+.. |. +.+...+|+|.
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPG-SD-------GQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccC-CC-------CCCCCcccCCC
Confidence 99998887776 57888888876 54 66788899885
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=140.15 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=147.5
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000697 1084 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163 (1348)
Q Consensus 1084 tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD 1163 (1348)
..++| +.+|..|++|+.||++|||++.. -... .....|...|.+ ++|++++..|++.|.| ..+|||
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps--~~t~-----l~e~~~~~eV~D----L~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPS--MLTI-----LEEIAHHAEVKD----LDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCc--chhh-----hhhHhhcCcccc----ceeCCCCcEEEEecCC-ceEEEE
Confidence 57888 68999999999999999999754 1111 235678899999 9999999999999999 899999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEecCCC---CEEE--EEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEec
Q 000697 1164 LEKEQQMVNPIPSSSDCSISALTASQVHG---GQLA--AGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQP 1236 (1348)
Q Consensus 1164 l~t~~~~v~~l~~~~~~~VtsL~~~s~dg---~~Lv--sGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp 1236 (1348)
++++. ++............+.+-+..++ .+++ .-..-|.|+.||+...+. ..+..+.. .....|+++++++
T Consensus 214 ~~~g~-~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 214 VNTGA-ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD 291 (398)
T ss_pred eccCc-hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence 99997 77666532222222222444444 2333 333456677777653331 11111111 1225799999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1237 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1237 ~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+ |++++.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++.+.|..+.|..+..
T Consensus 292 d--Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 D--GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred C--CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9 999999999999999999987444445568999999999999999999999999998887544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=131.29 Aligned_cols=250 Identities=15% Similarity=0.224 Sum_probs=179.7
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
..|++++|...+..+.+...+.|..+..+.+....-...+ ............|.+.. ..++.|+++-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-~~~~~~~l~~~~I~gl~------~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-DDAKTVSLGTKSIKGLK------LADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-ccccccccccccccchh------hcCCEEEEEecCCcEE
Confidence 5789999965555566666667777777776542111111 11122333445555522 2478899999999999
Q ss_pred EEECCCCc---eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC--CeEEEEECCCCCeeeEeecCCC------CCCCCe
Q 000697 1161 LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD--GSVRLYDVRTPDMLVCSTRPHT------QQVERV 1229 (1348)
Q Consensus 1161 VWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D--G~VrvwDlr~~~~~v~~~~~~~------~h~~~I 1229 (1348)
+|..+.+. .....+..+ .++..|.-.+....++++|+.. ..+++||+...+++.... ... .-.-|+
T Consensus 129 ~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK-NvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK-NVPNDRLGLRVPVWI 205 (412)
T ss_pred EEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc-CCCCccccceeeeee
Confidence 99887432 023444443 2366664455556777789998 889999999775332211 111 012478
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE-EE-
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GT- 1307 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l-~~- 1307 (1348)
+++.|-++.....|++++.-+.|++||.+.++.++..+.-...+|+++...|.+.++++|..-|.+..||.++..+ ..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 8899977534678999999999999999999899999999899999999999999999999999999999776544 33
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++ -.+.|+++..||.+++||++|-|..|+|+|
T Consensus 286 ~kg--------~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 286 LKG--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCC--------ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 333 348899999999999999999999999987
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-10 Score=123.41 Aligned_cols=294 Identities=18% Similarity=0.228 Sum_probs=182.6
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
+..|.. ..+..++||+.-..+|++..|..|+|||-.+ +....++... ...|++++|-+ -.+.-|++|+.. -|
T Consensus 93 vt~ws~---~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--QrnvtclawRP-lsaselavgCr~-gI 164 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--QRNVTCLAWRP-LSASELAVGCRA-GI 164 (445)
T ss_pred hhhhhh---cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--hcceeEEEecc-CCcceeeeeecc-ee
Confidence 455654 4688999999777889999999999998775 4444444322 26799999942 234466666665 59
Q ss_pred EEEeccCCCCceeEE---e----eeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCC
Q 000697 1107 RIWKDYDQKDKQKLV---T----AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lv---s----~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.||.........+.+ + ..-...+| ..|++ +.|++|+..+++++ .|..|.|||..++. ++.-.....
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVts----mqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~gl 238 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTS----MQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKGL 238 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeE----EEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccCC
Confidence 999874311111100 0 00112233 34444 99999999999997 67889999999998 555443333
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
++ ++-+ -++|++++|.++.-|+..++|.........+ +... .+.|...+|+|. |+.|+-.+. |.-++|.+.
T Consensus 239 gg-~slL-kwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lg---sgrvqtacWspc--GsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 239 GG-FSLL-KWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILG---SGRVQTACWSPC--GSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred Cc-eeeE-EEcCCCCEEEEecccceeeeehhcccceecc-eecc---CCceeeeeecCC--CCEEEEEEc-CCceEEEEe
Confidence 44 7777 7899999999999999999995543321111 1122 258999999999 665544332 344455543
Q ss_pred CCCcc--------------eEEEe-----cC----CCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCceEEE
Q 000697 1259 NHKDA--------------YLTID-----AH----RGSLSALAVHRHAPIIASGSAK--------QLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1259 ~~~~~--------------v~t~~-----~h----~~~VtsLa~spdg~~LasgS~D--------g~I~Vwd~~g~~l~~ 1307 (1348)
..+++ +..+. .. .+++.+++|.|.|.+||+.-.. ..|.+||.....+..
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 21110 00000 11 3578899999999999987543 346778866555555
Q ss_pred EeccCCcccccccCCeEEEEEeC---CCCEEEEEECCCeEEEc
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHP---YQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafsp---dg~~Latgs~Dg~I~IW 1347 (1348)
+.+ . ++.++ ....-++|+| ++.+|..+=+.|.+.-|
T Consensus 390 ls~-c-g~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 390 LSY-C-GMIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred EEe-c-ccccC--CCCceEEeeecccCCcEEEEEeccCceEee
Confidence 442 1 12221 1234455555 34566555556766544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-10 Score=121.16 Aligned_cols=237 Identities=19% Similarity=0.334 Sum_probs=160.6
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE-EEEECC----
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL-YASGEV---- 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L-l~gg~D---- 1156 (1348)
...+++| ++|...+++|.++| .|||+..--+.... +...+..-.+.. +-| ..+++ ++||.+
T Consensus 7 ~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~-----r~~~~~G~~~ve----MLf--R~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 7 KTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESAS-----RQFIDGGFKIVE----MLF--RSNYLALVGGGSRPKY 72 (346)
T ss_pred ceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhh-----hccccCchhhhh----Hhh--hhceEEEecCCCCCCC
Confidence 4456888 78889999888776 89998854111111 001111111111 111 12333 344433
Q ss_pred --CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1157 --SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1157 --g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
..|.|||-..+. ++.++.-. ++|.++ ... ++.+++.- .+.|.||.....-+..+.+.+.... ..+.+ +
T Consensus 73 ~pNkviIWDD~k~~-~i~el~f~--~~I~~V-~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~--~ 142 (346)
T KOG2111|consen 73 PPNKVIIWDDLKER-CIIELSFN--SEIKAV-KLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCS--L 142 (346)
T ss_pred CCceEEEEecccCc-EEEEEEec--cceeeE-EEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEe--e
Confidence 469999977777 88887753 348988 443 45566554 6789999988555456655444322 22333 3
Q ss_pred ecCCCCCEEEE-EECCCcEEEEEcCCCCc-ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEE-cCCceEEEEec
Q 000697 1235 QPGLDPAKIVS-ASQAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1235 sp~~~g~~LaS-gs~DG~I~IWDlr~~~~-~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~-I~Vwd-~~g~~l~~i~~ 1310 (1348)
.|..+..+||. |-.-|.|+|-|+..... .-..+.+|.+.|.|++.+-+|.++||+|..|+ |+||| .+|+.+..++.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 34412444544 33569999999986522 34788999999999999999999999999997 69999 78999999875
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
- .....|.+++|+|+..+||++|..|+|+||.
T Consensus 223 -G-----~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 223 -G-----VDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred -C-----CchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 1 2346899999999999999999999999973
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-09 Score=116.62 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=157.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEeCC------CeEEEE
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCN------GNIRIW 1109 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L-~tgs~D------G~IrIW 1109 (1348)
...+++|++|...+++|.++ -.+||+.+.-+...+-+-+. .+-.+..+-| ..++| ++||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~-~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFID-GGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhcccc-CchhhhhHhh----hhceEEEecCCCCCCCCCceEEEE
Confidence 45569999999999999855 58999987533322222111 1134444545 23444 344443 479999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC-CCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~-~~VtsL~~~ 1188 (1348)
|-.. +..... + ....+|.+ +... ...|++. ..+.|+||.....-+.++.+....+ ....++ ..
T Consensus 81 DD~k--~~~i~e-----l-~f~~~I~~----V~l~--r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~-~~ 144 (346)
T KOG2111|consen 81 DDLK--ERCIIE-----L-SFNSEIKA----VKLR--RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL-CP 144 (346)
T ss_pred eccc--CcEEEE-----E-Eeccceee----EEEc--CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee-cC
Confidence 9543 222111 1 23455665 4544 4455554 4567999998743225666654431 224444 22
Q ss_pred cCCCCEEEE-EeCCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceE
Q 000697 1189 QVHGGQLAA-GFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1189 s~dg~~Lvs-Gs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~ 1265 (1348)
..+..+|+. |..-|.|+|-|+...+.- -. ....|.+.|.|++.+-+ |..+||+|..|+ |||||..++ ..+.
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~---~I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g-~~l~ 218 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPS---IINAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG-TLLQ 218 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCce---EEEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-cEee
Confidence 223334443 566799999999876531 12 22367799999999998 999999999998 899999998 7887
Q ss_pred EEec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1266 TIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1266 t~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
.++. ....|.+++|+|++.+||++|+.|++.||.+.+
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 7763 245799999999999999999999999998643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=126.88 Aligned_cols=145 Identities=17% Similarity=0.270 Sum_probs=111.0
Q ss_pred EEEEECCCeEEEEECCCCceeeeee----------cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPI----------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l----------~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
+++|-.+|.|.+||+.++. .+..+ ..| ..+|.++.+. +.-+.=++|+.+..+..|.+.........-
T Consensus 168 llaGyEsghvv~wd~S~~~-~~~~~~~~~kv~~~~ash-~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGD-KIIQLPQSSKVESPNASH-KQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEeccCCeEEEEEccCCc-eeeccccccccccchhhc-cCcceeeeec-hhhcCCcCCCccccceeeeeccccCccccc
Confidence 4555689999999999985 33333 233 4458998544 344445677778888899887442111111
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1220 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
..+.-..-.|..+.+-|+ ++++++++.||.|+||..++. .++..++.|.+.|++++|||+..++|++|.|++|.+|+
T Consensus 245 ~e~~lknpGv~gvrIRpD--~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPD--GKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ceEEecCCCccceEEccC--CcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 111112356889999999 999999999999999999998 89999999999999999999999999999999999998
Q ss_pred c
Q 000697 1300 L 1300 (1348)
Q Consensus 1300 ~ 1300 (1348)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 4
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=143.02 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=191.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC-CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~-~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
+..+..+-. ++|++|. .-.|.+||+.++..+..+..... ....+.... .-.+.+++++..-+.+..=+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~-- 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN-- 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh--
Confidence 344444433 6777665 66799999998866554432110 000000000 02345666665544444322211
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE--EEEecCCCC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA--LTASQVHGG 1193 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts--L~~~s~dg~ 1193 (1348)
+. +......+.. ..+.-++..++.++.++.+.+||...+. ....+.........+ +.-++.+.-
T Consensus 81 ~~---------~~~~s~wi~g----~~l~~e~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 81 QI---------IERFSDWIFG----AKLFEENKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred hh---------hhhccccccc----cchhhhcceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEE
Confidence 11 1111222222 2223357888889999999999998877 666555433221111 112455566
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++++|+.-|.|.+|+....+... ...+|.+.|.++.++-+ |+++++.|.|.++++|++.+......+.-+|...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~----~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI----RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEEeccccccEEEEeccccCCcc----eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCcccccccce
Confidence 88999999999999998444333 23588999999999998 9999999999999999999884444466689999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+.|+|+ .+++++.|.+.++|+.+++.+..++. |. ...++.++.++....++|++.||.+++|+
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~-h~------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDE-HS------GKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEecccceehhhhh-hh------hcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999998 99999999999999999999998887 65 37899999999999999999999999996
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=123.17 Aligned_cols=272 Identities=13% Similarity=0.168 Sum_probs=181.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCCeEEEEeccCCCCce
Q 000697 1040 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1040 sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
-++|+|+|+++|+.+ +..+.|-|.++-+..+.|..- +.|.-+.| ..|..+++ ....|+.|.+|++.. .
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cl----dki~yieW--~ads~~ilC~~yk~~~vqvwsl~Q----p 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCL----DKIVYIEW--KADSCHILCVAYKDPKVQVWSLVQ----P 81 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHH----HHhhheee--eccceeeeeeeeccceEEEEEeec----c
Confidence 467999999999998 448888898877665555443 36888888 55665554 557888999999965 2
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1197 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lvs 1197 (1348)
+.. -.+..-..++.. .+|+|+|..|+.. ..+-.|.||.+.+.+ +.. ++ +....+..+ .+.++|++.+.
T Consensus 82 ew~---ckIdeg~agls~----~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~-~~-~pK~~~kg~-~f~~dg~f~ai 150 (447)
T KOG4497|consen 82 EWY---CKIDEGQAGLSS----ISWSPDGRHILLTSEFDLRITVWSLNTQK-GYL-LP-HPKTNVKGY-AFHPDGQFCAI 150 (447)
T ss_pred eeE---EEeccCCCccee----eeECCCcceEeeeecceeEEEEEEeccce-eEE-ec-ccccCceeE-EECCCCceeee
Confidence 222 123444455555 8999999777766 478899999999877 332 22 223335666 56778877665
Q ss_pred EeC------------------------------------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1198 GFV------------------------------------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1198 Gs~------------------------------------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
.+. +..+-+||---.-+ +..+ +..-.+..+.|+|. ++
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aY----e~~lG~k~v~wsP~--~q 223 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAY----ERGLGLKFVEWSPC--NQ 223 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeee----eeccceeEEEeccc--cc
Confidence 542 22344555433221 1111 11246889999998 99
Q ss_pred EEEEEECCCcEEEEEcCCCC------------------------c-----------------------------------
Q 000697 1242 KIVSASQAGDIQFLDIRNHK------------------------D----------------------------------- 1262 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~------------------------~----------------------------------- 1262 (1348)
+++.|+.|+.+++.+--+.+ +
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 99999999999886622110 0
Q ss_pred ceEEEe------cCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1263 AYLTID------AHRGSLSALAVHRHAPIIASGSAK--QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1263 ~v~t~~------~h~~~VtsLa~spdg~~LasgS~D--g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
.+..++ .....+..++|++|..++|+-.+. +.+-+||+....+..+-. . ..+|....|+|....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Q-------k~piraf~WdP~~pr 375 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-Q-------KHPIRAFEWDPGRPR 375 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-h-------ccceeEEEeCCCCce
Confidence 000000 012246679999999999987543 568899987766655433 2 268999999999999
Q ss_pred EEEEECCCeEEEcC
Q 000697 1335 LAAGSADACVSIHS 1348 (1348)
Q Consensus 1335 Latgs~Dg~I~IWd 1348 (1348)
|+.+....++++|.
T Consensus 376 L~vctg~srLY~W~ 389 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWA 389 (447)
T ss_pred EEEEcCCceEEEEc
Confidence 98888778888884
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=134.86 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=133.4
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
...++.++.||.+.+.+-. ++ ..+.+.+|.+. |.+- -++++|.-|++.+.||.|++|.....- ..+ .....
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~r-VE~sv~AH~~A-~~~g-RW~~dGtgLlt~GEDG~iKiWSrsGML--RSt---l~Q~~ 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-AR-VERSISAHAAA-ISSG-RWSPDGAGLLTAGEDGVIKIWSRSGML--RST---VVQNE 145 (737)
T ss_pred cceEEEEcCCceEEEeccc-ch-hhhhhhhhhhh-hhhc-ccCCCCceeeeecCCceEEEEeccchH--HHH---HhhcC
Confidence 4578888999999988743 33 45667777665 7776 678999999999999999999865332 111 11234
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~ 1306 (1348)
..|.|++|.|+ ..+.+.+.+ |.+.|=-+... ..+..+++|++-|.+++|++...++++|+.|-..+|||--|..+.
T Consensus 146 ~~v~c~~W~p~-S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf 221 (737)
T KOG1524|consen 146 ESIRCARWAPN-SNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF 221 (737)
T ss_pred ceeEEEEECCC-CCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc
Confidence 78999999999 455555543 56666666665 567788999999999999999999999999999999999898887
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.-.. |+ .+|++++|+|+ ..++.++
T Consensus 222 ~S~~-~e-------y~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 222 TSAA-EE-------YAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cCCh-hc-------cceeeeeeccc-cceeeee
Confidence 7666 55 89999999999 5555555
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=123.17 Aligned_cols=231 Identities=10% Similarity=0.116 Sum_probs=170.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+|+|.+| +.|...++++-....|.||..... +-.+.. +++..|...|++ ++|.+..+.|++++.|..-+
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~-~~w~~~---htls~Hd~~vtg----vdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGA-DLWEPA---HTLSEHDKIVTG----VDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCC-CCceec---eehhhhCcceeE----EeecCCCCceeEccCCCCcc
Confidence 68999999 789999999999999999998651 113333 778999999988 99999999999999999999
Q ss_pred EEECCCC-c-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1161 LWDLEKE-Q-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1161 VWDl~t~-~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
||....+ + .+.-.+..+... ++++ -++|.++.|++|+....|.||-......--........+.+.|++++|+|+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrA-At~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn- 157 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRA-ATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN- 157 (361)
T ss_pred ccccCCCCeeccceeEEEeccc-eeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence 9998433 2 123333334343 8999 678899999999999999999877654221000011234588999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-----------------CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNH-----------------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~-----------------~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+-.++.|+.|+..++|..--. ++.+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|..
T Consensus 158 -nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 158 -NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred -cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 999999999999999974211 02333444456789999999999999999999999999966
Q ss_pred Cce--EEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1302 GEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1302 g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
+.. +..... . .-+..++.|-.+..
T Consensus 237 ~p~~~v~~~~~-~-------~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 237 GPSERVQSVAT-A-------QLPLLSVSWISENS 262 (361)
T ss_pred CCchhccchhh-c-------cCCceeeEeecCCc
Confidence 542 443333 1 13556666654443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=135.43 Aligned_cols=170 Identities=21% Similarity=0.389 Sum_probs=134.0
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCe
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGS 1203 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~ 1203 (1348)
+.+.||.+.|.+ ++|+.+|..|++|++|-.+.|||.-..+ .+..+...+...|.++.+.+..+ .++++|..|..
T Consensus 44 ~eL~GH~GCVN~----LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNC----LEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecc----eeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 357899999999 9999999999999999999999999888 88888877766799998877654 56778999999
Q ss_pred EEEEECCCCCe------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe---------
Q 000697 1204 VRLYDVRTPDM------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--------- 1268 (1348)
Q Consensus 1204 VrvwDlr~~~~------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--------- 1268 (1348)
|++||+...+. +.........|...|..++..|+ +.+.+.++++||+|+-+|+|....+-....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999985221 11122234467789999999998 458999999999999999997422211111
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1269 AHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
..--...|+.++|..+ +||+|+.|-..++||.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 1123578999999766 8999999999999993
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-12 Score=149.27 Aligned_cols=240 Identities=16% Similarity=0.277 Sum_probs=175.5
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
+.++.+.+|. ..|.|+.| ...|.++++|++|..|+||...+ +. + .....||.+.++. ++.+..+
T Consensus 181 k~ikrLlgH~---naVyca~f--Drtg~~Iitgsdd~lvKiwS~et--~~--~---lAs~rGhs~ditd----lavs~~n 244 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIF--DRTGRYIITGSDDRLVKIWSMET--AR--C---LASCRGHSGDITD----LAVSSNN 244 (1113)
T ss_pred HHHHHHHhhh---hheeeeee--ccccceEeecCccceeeeeeccc--hh--h---hccCCCCccccch----hccchhh
Confidence 3445567888 88999999 78999999999999999999755 22 2 2467899999998 6666677
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-CCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-QQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-~h~ 1226 (1348)
-.+++++.|..|++|-+..+. ++..+.+|.+. |+++ .++|-. +.+.||++++||.|-.. ....-+... ..+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~-pvsvLrghtga-vtai-afsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGA-PVSVLRGHTGA-VTAI-AFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhhcccCceEEEEecCCCc-hHHHHhccccc-eeee-ccCccc----cCCCCCceEeccccccc-cccCCCCCCcccc
Confidence 778888999999999999999 99999999887 9999 555543 78899999999999222 111111111 112
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE-cCCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS-LEGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd-~~g~~ 1304 (1348)
.-+.++.+... +.-++||+.|+.-..|.+... .. +...+.-+..+.+ ..+.+++-.+..+.+|+ .+|..
T Consensus 317 ~~~~s~~~~~~--~~~f~Tgs~d~ea~n~e~~~l-~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 317 DLVDSILFENN--GDRFLTGSRDGEARNHEFEQL-AW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred cceeeeecccc--ccccccccCCcccccchhhHh-hh------hccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 45667777666 889999999999998887642 11 1111111111111 24566666778899999 67777
Q ss_pred EEEEeccCCcccccccCCeEEEEEeCCCCEE-EEEECCCeEEEcC
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIHS 1348 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafspdg~~L-atgs~Dg~I~IWd 1348 (1348)
+..+.+ |. ..+..+.+||-+..+ .+++.||...|||
T Consensus 388 ~H~l~g-hs-------d~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 388 LHNLMG-HS-------DEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhhhcc-cc-------cceeeeeecCCCcHhhhhccCCCceEeee
Confidence 766666 54 789999999988554 5677899999997
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-10 Score=135.05 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=147.1
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---g~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIW 1109 (1348)
..+...+|+|||+.|+.++.+ ..|.+||+.+++. +..+.++ ...++| ++||+.|+.++ .+|.+.||
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~~~~w--SPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NGAPAF--SPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cCceeE--CCCCCEEEEEEecCCcEEEE
Confidence 568899999999999887643 3699999988753 3333333 346788 88999888765 68887777
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
.+....+... .+..+...+.. ..|++++..|+.++ .+|...||++.........+ .+.. .+. .+
T Consensus 276 ~~d~~~~~~~------~lt~~~~~~~~----~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~-~~ 340 (429)
T PRK01742 276 VMGANGGTPS------QLTSGAGNNTE----PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSA-QI 340 (429)
T ss_pred EEECCCCCeE------eeccCCCCcCC----EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCc-cC
Confidence 5543223322 23444444444 89999999877665 57888888765432022223 2222 234 57
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-CCcceEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-HKDAYLTI 1267 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~-~~~~v~t~ 1267 (1348)
+++|+.++.++.++ +.+||+.+++. ....... ...++.|+|+ |+.|+.++.+|.+.+|++.. .+.....+
T Consensus 341 SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~-----~~~~~~~sPd--G~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 341 SADGKTLVMINGDN-VVKQDLTSGST-EVLSSTF-----LDESPSISPN--GIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCC-----CCCCceECCC--CCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 89999998887765 55599988763 2221111 2346789999 99999999999988887632 23678888
Q ss_pred ecCCCCeEEEEEeCC
Q 000697 1268 DAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1268 ~~h~~~VtsLa~spd 1282 (1348)
..|.+.+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888999999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=126.17 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=170.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEeccCCCCc
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~ 1117 (1348)
..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++ ++||++++++. ..+.+.|+|..+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~t---- 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAV--SPDGKYVYVANYEPGTVSVIDAET---- 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE----TTTEEEEEEEETTEEEEEETTT----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEE--cCCCCEEEEEecCCCceeEecccc----
Confidence 457799999999999999999999999999999998766 5678898 78999998775 689999999865
Q ss_pred eeEEeeeecc--c--CCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCcee-eeeecCCCCCCeEEEEEecCC
Q 000697 1118 QKLVTAFSSI--Q--GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQM-VNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1118 ~~lvs~~~~l--~--~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~-v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+.+..+..- . .....+.. +.-++....+++.- +.+.|.+.|....+.. +..+.. +...... .++++
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~a----Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~-~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAA----IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDG-GFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEE----EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEE-EE-TT
T ss_pred ccceeecccccccccccCCCcee----EEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--ccccccc-ccCcc
Confidence 2222111111 1 11222323 44456666566655 4588888887765412 223332 2235666 67889
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecC--------CCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1192 GGQLAAG-FVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPG--------LDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1192 g~~LvsG-s~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~--------~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
+++++++ ..+..|-++|.++.+. +..+. ....|...+..+ .+|. ..+...++.-..+.+.+||....
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~-v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w- 259 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKL-VALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW- 259 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEE-EEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT-
T ss_pred cceeeecccccceeEEEeeccceE-EEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcC-
Confidence 9887664 5677999999998873 33332 223344444443 2333 01222222333345667888887
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEE----eCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASG----SAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1336 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~Lasg----S~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~La 1336 (1348)
+.++++....+. .-+..||+++++.+. ...+.|.|+|... +.+..+.. .. ...+..+.|+++|..+.
T Consensus 260 kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~------~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GP------GKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HH------T--EEEEEE-TTSSEEE
T ss_pred eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cC------CCcEeccEECCCCCEEE
Confidence 788999877666 778889999999887 4458999999654 44555543 11 13489999999998766
Q ss_pred EEEC--CCeEEEcC
Q 000697 1337 AGSA--DACVSIHS 1348 (1348)
Q Consensus 1337 tgs~--Dg~I~IWd 1348 (1348)
.+.. ++.|.|||
T Consensus 332 vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 332 VSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEE--TTEEEEEE
T ss_pred EEEecCCCEEEEEE
Confidence 5555 44798886
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-09 Score=125.62 Aligned_cols=236 Identities=11% Similarity=0.096 Sum_probs=155.5
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe---CCCeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs---~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
...|.+||.+.... +.+..+. ..+.+.+| ++||+.|+..+ .+..|.+|++.. ++.+.+ ..+.++
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l---~~~~~~-- 244 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV---ASFPRH-- 244 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCC--CCeEEc---cCCCCC--
Confidence 34788888875443 3344444 57889999 78999888654 245788999865 444433 122222
Q ss_pred cccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-CeEEE--
Q 000697 1133 GVRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRL-- 1206 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G~Vrv-- 1206 (1348)
+.. ..|+|++..|+.. +.+| .|++||+.+++ .. .+..+.. .+... .++++|+.|+..+.+ |...+
T Consensus 245 -~~~----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~-~lt~~~~-~~~~~-~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 -NGA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRS-NNTEP-TWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -cCC----eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EccCCCC-CcCce-EECCCCCEEEEEeCCCCCceEEE
Confidence 233 7899999988876 3444 59999998877 43 3433333 35666 678999988877654 44444
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1207 wDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
+|+.+++ .. .+.. +........|+|+ |+.|+..+.+ ..|.+||+.++ . ...+... .......|+|||
T Consensus 316 ~d~~~g~-~~-~lt~---~~~~~~~~~~SpD--G~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 316 VNINGGA-PQ-RITW---EGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNG 385 (429)
T ss_pred EECCCCC-eE-Eeec---CCCCccCEEECCC--CCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCC
Confidence 4666554 22 2211 1234567889999 8888776543 35888998876 3 3334322 223467899999
Q ss_pred CEEEEEeCCCc---EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1284 PIIASGSAKQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1284 ~~LasgS~Dg~---I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+.|+.++.++. +.+++++|.....+.. |. +.+...+|+|.
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~-~~-------~~~~~p~Wsp~ 428 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 428 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCCeEECcc-CC-------CCcCCcccCCC
Confidence 99998887764 6777888988888876 54 56778888873
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=117.47 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=176.5
Q ss_pred CCcEEEEECCCCcEEE--EeeCCCCCCCCeEEEEEEee-CCCC-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1056 NERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNE-LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~--~~~~h~~~~~~ItsL~f~ns-~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
.|.+.+|++++.+... +++... ...+..+.|.-. .++. .++-+..+|.|.++.......... ++.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d--ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD--TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKK 118 (339)
T ss_pred ccceEEEeecccccCccceeeeec--ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhh
Confidence 4678888887654433 222111 146777777422 2444 567778889999998754211111 12233222
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr 1210 (1348)
-.+. ..++++|+..+..++++-.+|.+.+-+..... +.++.++.|.-. .+...+...+.+++.+|+.||.+..||+|
T Consensus 119 i~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 ISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEec
Confidence 2222 24568999999999999899998865544433 134467776544 55555666778999999999999999999
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC--CCEEEE
Q 000697 1211 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH--APIIAS 1288 (1348)
Q Consensus 1211 ~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd--g~~Las 1288 (1348)
.++ ...+...+-|...|.+|.-+|. .+.++++|+.|-.|++||.|+.++++..-.. .+.|+.+..||. +.++++
T Consensus 197 ~p~--~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 197 IPK--TFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred CCc--ceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHH
Confidence 554 3344444567799999999887 7899999999999999999977677765442 478999999995 335555
Q ss_pred EeCCCcEEEEEcCC---c---eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCeEE-Ec
Q 000697 1289 GSAKQLIKVFSLEG---E---QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVS-IH 1347 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~g---~---~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~I~-IW 1347 (1348)
+=.+| .+|-+.+. + .+...+. |. +-+..-.|.....+|||++. |+.++ +|
T Consensus 273 CMh~G-~ki~~~~~~~~e~~~~~~s~~~-hd-------Sl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 273 CMHNG-AKILDSSDKVLEFQIVLPSDKI-HD-------SLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHhcC-ceEEEecccccchheeeecccc-cc-------ceeeccccccccceeeeeeccccceeeee
Confidence 54444 56666432 2 2222222 22 44455556444567888765 77755 66
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-09 Score=113.22 Aligned_cols=274 Identities=14% Similarity=0.158 Sum_probs=180.5
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEeccCC
Q 000697 1037 GTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1037 ~I~sl~fspdg~~La-tgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.|.-+.|..|.-+++ ++..++.|.+|++...+-...+.... .++.+++| +||| .+|.+..-+-.|.||.+.+.
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC---CcceeeeE--CCCcceEeeeecceeEEEEEEeccc
Confidence 455666777766554 55678899999999888888888777 79999999 8899 56666777899999999762
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE------------------------------------CCCe
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG------------------------------------EVSS 1158 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg------------------------------------~Dg~ 1158 (1348)
.+ -.+ +-....+.. ++|++++.+.+..+ ++..
T Consensus 125 ~~--~~~------~~pK~~~kg----~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 125 KG--YLL------PHPKTNVKG----YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred ee--EEe------cccccCcee----EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 22 111 111112222 45555554433322 1223
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe------------------------
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM------------------------ 1214 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~------------------------ 1214 (1348)
+.|||.--+- .+..+. .+-.+..+ .++|.+++++.|+.|+.+|+.+--+-+.
T Consensus 193 laVwd~~Ley-kv~aYe--~~lG~k~v-~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 193 LAVWDNVLEY-KVYAYE--RGLGLKFV-EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred EEEecchhhh-eeeeee--eccceeEE-EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 4556643333 222222 22347788 6789999999999999998855322110
Q ss_pred -----------------------------------eeEeec---CCCCCCCCeEEEEEecCCCCCEEEEEECC--CcEEE
Q 000697 1215 -----------------------------------LVCSTR---PHTQQVERVVGISFQPGLDPAKIVSASQA--GDIQF 1254 (1348)
Q Consensus 1215 -----------------------------------~v~~~~---~~~~h~~~I~sl~~sp~~~g~~LaSgs~D--G~I~I 1254 (1348)
.+...+ ........+.-++|+++ ..++++-... ..+.+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D--s~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD--STYAATRNDKYPNALWL 346 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC--ceEEeeecCCCCceEEE
Confidence 000000 00011234667889998 7788776543 56999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
||++.. .+..+-....+|....|+|..+.|+.+....++++|...|-....... .| -.|..+.|+-.|..
T Consensus 347 Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~G------F~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 347 WDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KG------FNIQKLQWLQPGEF 416 (447)
T ss_pred Eechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CC------ceeeeEEecCCCcE
Confidence 999976 333333456789999999999988888777889999988855444433 22 46899999999999
Q ss_pred EEEEECCCe
Q 000697 1335 LAAGSADAC 1343 (1348)
Q Consensus 1335 Latgs~Dg~ 1343 (1348)
++..+.|..
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 999988864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=127.07 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=129.9
Q ss_pred cCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC----e---
Q 000697 1145 QQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----M--- 1214 (1348)
Q Consensus 1145 ~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~---~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----~--- 1214 (1348)
+.+-.+++|-..|.|.+.|....+ ..+-+.. -....|+|+.|...+...|+++..+|.+.+||..... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345678888888999999876643 2111111 1224599999998889999999999999999874210 0
Q ss_pred --------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1215 --------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1215 --------------------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
.+..+.. -.+.|...+|+|+ |++||+.+.||.+||||..+. +.+..++..-+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGL 335 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCC--CceEEEEecCceEEEeeccHH-HHHHHHHhhccce
Confidence 0001101 1347889999999 999999999999999999987 6777777777889
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
.|++|+|||++|++|++|--|.||.+ +.+.+..=++ | .+.|+.++|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-H-------kSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-H-------KSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-c-------ccceeeEeecc
Confidence 99999999999999999999999995 4555555555 4 48899999983
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=128.53 Aligned_cols=255 Identities=13% Similarity=0.133 Sum_probs=178.2
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec--CC
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QS 1147 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~--~~ 1147 (1348)
...+..|. +.|..|.| ...|..|++|++|..|.+||+.. +...+ +-..+|...|.. ..|-| +.
T Consensus 135 ~~kL~~H~---GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~--~~~~l----~f~SGH~~NvfQ----aKFiP~s~d 199 (559)
T KOG1334|consen 135 QKKLNKHK---GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVS--GSPKL----SFESGHCNNVFQ----AKFIPFSGD 199 (559)
T ss_pred hhcccCCC---Cccceeee--cccCceeeccCccceEEeehhhc--cCccc----ccccccccchhh----hhccCCCCC
Confidence 34567788 89999999 68999999999999999999976 33322 234677777766 33433 34
Q ss_pred CeEEEEECCCeEEEEECCCCceee--eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v--~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
..+++++.||.|++=.+.....+. ..+..|.+ +|.-++..+.....|.+++.|+.|.-+|+|......... ....+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~ 277 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREAD 277 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccC
Confidence 578888999999987654333022 23334444 488886666677899999999999999999776322222 22223
Q ss_pred CC---CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc-----ceEEEecC------CCCeEEEEEeCCCCEEEEEeC
Q 000697 1226 VE---RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD-----AYLTIDAH------RGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1226 ~~---~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~-----~v~t~~~h------~~~VtsLa~spdg~~LasgS~ 1291 (1348)
.. ....++.+|. +...+++|+.|..+++||.+.-.+ .+..+..| .-.|++++++.++.-+.+.-.
T Consensus 278 ~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 33 5778999998 667999999999999999985421 12333322 346999999977665555556
Q ss_pred CCcEEEEEc---CC----------ceEEE-EeccCCcccccccCCeEEEEE-eCCCCEEEEEECCCeEEEcC
Q 000697 1292 KQLIKVFSL---EG----------EQLGT-IRYHHPSFMAQKIGSVNCLTF-HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1292 Dg~I~Vwd~---~g----------~~l~~-i~~~h~~f~~~~~~~Vtslaf-spdg~~Latgs~Dg~I~IWd 1348 (1348)
|-.|++++. .| ..+.. +++ |. ....|.++-| -|...++++|+.=|+|.||+
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG-Hr-----N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG-HR-----NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcc-cc-----cccccceeeeccCccceEEecCccceEEEEe
Confidence 677999973 23 11222 555 44 3345777765 57789999999999999996
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=116.24 Aligned_cols=157 Identities=23% Similarity=0.363 Sum_probs=114.5
Q ss_pred EEEEecCCCeEEEEEC----------CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEE--EeCCCeEEEE
Q 000697 1140 VVDWQQQSGYLYASGE----------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGSVRLY 1207 (1348)
Q Consensus 1140 ~v~ws~~~~~Ll~gg~----------Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lvs--Gs~DG~Vrvw 1207 (1348)
.+.|+++|.+|++-.. -|...+|.++.....+..+......+|.++ .++|+|+.|++ |..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~-~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV-AWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE-EECcCCCEEEEEEccCCcccEEE
Confidence 4889999988777533 133555655332214555555445569999 67889988754 4467899999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~---DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|++. + .+..+. ...+..+.|+|+ |+++++|+. .|.|.+||.++. +.+.+.. | ..++.++|+|+|+
T Consensus 89 d~~~-~-~i~~~~-----~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr 156 (194)
T PF08662_consen 89 DVKG-K-KIFSFG-----TQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGR 156 (194)
T ss_pred cCcc-c-EeEeec-----CCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCC
Confidence 9973 2 233331 357889999999 999999874 467999999976 6666654 3 3478999999999
Q ss_pred EEEEEeC------CCcEEEEEcCCceEEEEe
Q 000697 1285 IIASGSA------KQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1285 ~LasgS~------Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
++++++. |+.++||+..|+.+....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998864 788999999999887654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=131.87 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=171.8
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
+-..+.| +.+|.+|+.|+..|.|-.+|+.+ +..... + .-...|.+ +.|-.+..++ +....+.++|
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t--~~L~~E-----i-~v~Etv~D----v~~LHneq~~-AVAQK~y~yv 195 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVT--KKLHFE-----I-NVMETVRD----VTFLHNEQFF-AVAQKKYVYV 195 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeeccc--ceeeee-----e-ehhhhhhh----hhhhcchHHH-HhhhhceEEE
Confidence 4567888 78999999999999999999976 222211 1 12234555 6666554444 4456678999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
||-..- .+..++.+.. |..+. +-|..-+|++++..|.++--|+.+++ ++..+.+- .+.+..++-+|. ..
T Consensus 196 YD~~Gt--ElHClk~~~~--v~rLe-FLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~---~G~~~vm~qNP~--Na 264 (545)
T KOG1272|consen 196 YDNNGT--ELHCLKRHIR--VARLE-FLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTG---AGRTDVMKQNPY--NA 264 (545)
T ss_pred ecCCCc--EEeehhhcCc--hhhhc-ccchhheeeecccCCceEEEeechhh-hhHHHHcc---CCccchhhcCCc--cc
Confidence 996544 3667766533 78884 45677889999999999999999998 55544333 378888999998 88
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCccccccc
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~ 1320 (1348)
++-+|..+|+|.+|..... +++..+..|.++|++++++++|.++||.+.|..++|||+.. ..+.++.. .
T Consensus 265 Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---------p 334 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---------P 334 (545)
T ss_pred eEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---------C
Confidence 9999999999999999887 78888889999999999999999999999999999999764 33333322 1
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+...++||..| +||.+ ....|.||.
T Consensus 335 ~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CCcccccccccc-ceeee-cCCeeeeeh
Confidence 356778888655 44443 455788884
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=123.61 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=162.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE------EeeCCCCCCCCeEEEEEE---eeCCCCEEEEEeCCCeEEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLN------SFDNHDFPDKGISKLCLV---NELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~------~~~~h~~~~~~ItsL~f~---ns~d~~~L~tgs~DG~IrI 1108 (1348)
+....++-.|++|+-.- ...+.||++..+..+. .+++ ...+|-.|. -.+++--|+.|-.-|.|.+
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g-----t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~ 199 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG-----TSPTCHDFNSFTATPKGLDLLIGFTTGQVQL 199 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC-----CCCceecccccccCCCCcceEEeeccCceEE
Confidence 33444444556655443 3467888877432211 1222 223344441 1245667888888899999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCc-------------------
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQ------------------- 1168 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~------------------- 1168 (1348)
.|.... .-.++ +.....-..+..+++.|-+.+..++.. -.+|.+++||.+-..
T Consensus 200 idp~~~-~~skl------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 200 IDPINF-EVSKL------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ecchhh-HHHHh------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 887441 11111 111111111223348998876655554 588999999764210
Q ss_pred --------eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1169 --------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1169 --------~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
.++..+....+ .|... ++++||++|++.+.||.+||||..+.+ +...++.. -+...|++|+|+ |
T Consensus 273 t~ksk~~rNPv~~w~~~~g-~in~f-~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSY---FGGLLCvcWSPD--G 344 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEG-SINEF-AFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSY---FGGLLCVCWSPD--G 344 (636)
T ss_pred eeeccccCCccceeEeccc-cccce-eEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhh---ccceEEEEEcCC--c
Confidence 01111111222 47788 677899999999999999999999877 55555443 378999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----------------------------------C--
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----------------------------------A-- 1283 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----------------------------------g-- 1283 (1348)
++|++|++|.-|.||.+... +.+..-++|+.+|+.++|.|. +
T Consensus 345 KyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred cEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 99999999999999999987 788888999999999999831 1
Q ss_pred -----------CEEEEEeCCCcEEEEEcCCceEEE
Q 000697 1284 -----------PIIASGSAKQLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1284 -----------~~LasgS~Dg~I~Vwd~~g~~l~~ 1307 (1348)
-.|.+.+.|-.+.+||++...+..
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhhccc
Confidence 146677889999999987655543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=125.02 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=152.6
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.+||.+. ...+.+..+. ..+.+..| ++|++.|+.++.+ ..|.+||+.. ++.+.+ ......
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~---~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~--g~~~~l------~~~~g~ 249 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSA---EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLAT--GQRELV------ASFRGI 249 (433)
T ss_pred EEEEEECCCC-CCceEeecCC---CccccccC--CCCCCEEEEEecCCCCcEEEEEECCC--CCEEEe------ccCCCC
Confidence 4688999864 4344455555 57888999 7899998887643 4699999865 443333 222222
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CCe--EEEE
Q 000697 1134 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLY 1207 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG~--Vrvw 1207 (1348)
... ..|++++..++.+ +.+| .|++||+.+++ . ..+..+... .... .++++|+.++.++. +|. |.++
T Consensus 250 ~~~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~-~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGA----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-L-TRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccC----ceECCCCCEEEEEEeCCCCceEEEEECCCCC-e-EECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEE
Confidence 223 7899999988654 4444 69999998877 3 444443322 4556 67889998887764 454 6666
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|+.+++ ..+.. .. .......+|+|+ |+.|+..+.++ .|.+||+.++ ... .+. +........|+|+|+
T Consensus 322 dl~~g~-~~~lt--~~--g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 322 AASGGS-AERLT--FQ--GNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred ECCCCC-eEEee--cC--CCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCCCCCCceECCCCC
Confidence 776655 22221 11 234457899999 88887765443 5999999876 333 333 223445679999999
Q ss_pred EEEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1285 IIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1285 ~LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
.++..+.+ +.|.+++.+|.....+.. +. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGRVRQRLVS-AD-------GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCCceEEccc-CC-------CCCCCCccCC
Confidence 87776653 457888888877776654 33 4566677776
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-09 Score=116.07 Aligned_cols=245 Identities=15% Similarity=0.228 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VW-d~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+++...-|-++-+++.+.|.+++|| +.+.++.-..+....+ .+++++.+ ..+...|++|-.+|++.-+.+..
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y--~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEY--VSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeee--eccceEEEEEEecceEEEEEhhh
Confidence 3557777777888889999999999999 4555555444443332 58899999 67889999999999999998865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.-.+.... +....|...+.. +-|+.....+++.|.|..+.---.+.+. .+..+..... -+++.+ +-.
T Consensus 100 dfnkm~~~---r~~~~h~~~v~~----~if~~~~e~V~s~~~dk~~~~hc~e~~~-~lg~Y~~~~~--~t~~~~---d~~ 166 (404)
T KOG1409|consen 100 DFNKMTFL---KDYLAHQARVSA----IVFSLTHEWVLSTGKDKQFAWHCTESGN-RLGGYNFETP--ASALQF---DAL 166 (404)
T ss_pred hhhhcchh---hhhhhhhcceee----EEecCCceeEEEeccccceEEEeeccCC-cccceEeecc--CCCCce---eeE
Confidence 33333333 556678887777 5666677889998988766443344443 2222111000 111100 011
Q ss_pred EEEEEeCCCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+...|...|.|.+-.+.... ..+. ...+|.+.+++++|.+. ...+.+|..|..|.+||+-..........+|.+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~---~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLIT---TFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred EEEecccccceEEEEEeecCCceEE---EEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 44456666776665554332 1222 44578899999999998 999999999999999999876566778889999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|..+..-+..+.+.+++.||.|.+|+.+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999999999999999964
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=121.26 Aligned_cols=283 Identities=12% Similarity=0.191 Sum_probs=197.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
.....|++|+....++++|+.||.++|-.+.+.. .-+++.+|+ ..|.-+.| +.....|-|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~---~sV~vvTW--Ne~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN---ASVMVVTW--NENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc---ceEEEEEe--ccccccccc
Confidence 3568899999999999999999999999876431 123567888 89999999 567788889
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
...+|.|.||-++...--.+++ ..... +...+++|+.+|..|...-.||.|.|=.++...-.-+.+++..
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi------NnRnK---SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~- 158 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI------NNRNK---SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL- 158 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh------hCcCc---cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe-
Confidence 9999999999998732222222 22222 2223499999999999998898887776665440112233221
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-------eeeEeecCCCCCCCCeEEEEEecC------CCCCEEEEE
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-------MLVCSTRPHTQQVERVVGISFQPG------LDPAKIVSA 1246 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~-------~~v~~~~~~~~h~~~I~sl~~sp~------~~g~~LaSg 1246 (1348)
...+ .++++...++.+-.+|.+.+||....- +.+.....+......|..++|..+ .+...++.+
T Consensus 159 --l~hv-~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 159 --LAHV-LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred --ccce-eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence 2344 577888888899999999999986431 112211111112234666776422 126789999
Q ss_pred ECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCceEEEEeccCCcccc
Q 000697 1247 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---------QLIKVFSLEGEQLGTIRYHHPSFMA 1317 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---------g~I~Vwd~~g~~l~~i~~~h~~f~~ 1317 (1348)
-.+|.+.|-.-.+...++..-.+ -.+....|+++|.+||.++.+ +.|.+|..-|+.+.+++. ..
T Consensus 236 y~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv-pg---- 308 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV-PG---- 308 (1189)
T ss_pred EcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec-CC----
Confidence 99999998766655455543333 468899999999999998764 367888877888888887 43
Q ss_pred cccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1318 QKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1318 ~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|++++|-..|-.+|.+ .|+.|.+
T Consensus 309 ---~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 309 ---SCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ---ceeeeeEEcCCceEEEEE-ecceEEE
Confidence 789999998888777665 3666654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-08 Score=122.66 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=147.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.++|.+ |.....+..+. ..+.+.+| ++||+.|+..+.+ ..|.+||+.+ ++...+ ......
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP---EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVV------ANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCC---CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCC--CCEEEe------ecCCCC
Confidence 457777774 44444455555 67888999 7899988877643 3599999865 433332 112222
Q ss_pred ccccceEEEEecCCCeEEE-EECCCeEEEEE--CCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CCeEEEEEC
Q 000697 1134 VRCSNVVVDWQQQSGYLYA-SGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1209 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWD--l~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG~VrvwDl 1209 (1348)
+.. ..|+|++..|+. .+.+|...+|. ..++. ...+..+.. .+.+. .++++|+.++..+. +|...+|.+
T Consensus 242 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSA----PAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSG-IDTEP-FFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccc----eEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCC-CCcCe-EEcCCCCEEEEEecCCCCcEEEEE
Confidence 233 899999998875 46677766654 44444 444444332 24555 57889998876654 466666655
Q ss_pred C--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1210 R--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1210 r--~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
. ++. ..+.. ..+ .......|+|+ |++|+..+.++ .|.+||+.++ .. ..+..+ .......|+|+|+
T Consensus 314 ~~~~g~-~~~lt--~~g--~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 314 PASGGA-AQRVT--FTG--SYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATG-QV-TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred ECCCCc-eEEEe--cCC--CCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCC-CCccCceECCCCC
Confidence 4 433 22221 111 33446789999 88888777654 5999999876 33 333322 2346789999999
Q ss_pred EEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1285 IIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1285 ~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.|+.++.++ .+.+.+.+|.....+.. +. +.+...+|+|.
T Consensus 384 ~l~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp~ 425 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSSDGRIKQRLSV-QG-------GDVREPSWGPF 425 (427)
T ss_pred EEEEEEecCCCEEEEEEECCCCceEEeec-CC-------CCCCCCccCCC
Confidence 887776544 35556677877666654 33 55677788774
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-08 Score=118.92 Aligned_cols=234 Identities=10% Similarity=0.056 Sum_probs=152.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.+||.+ +...+.+..+. ..+.+..| ++||+.|+..+. +..|.+||+.+ +..+.+ ..+...
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~---~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l------~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS---SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLET--GQRELV------GNFPGM 247 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC---CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCC--CcEEEe------ecCCCc
Confidence 478888886 44445566666 68999999 789998887753 46899999965 443333 333334
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEE
Q 000697 1134 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLY 1207 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~Vrvw 1207 (1348)
+.. ..|+|++..|+.+ +.+| .|.+||+.++. ...+..+.. ...+. .++++|+.++..+. +| .|.++
T Consensus 248 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~-~~~~~-~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFA----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPA-IDTSP-SYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccC----cEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCC-ccCce-eEcCCCCEEEEEECCCCCCeEEEE
Confidence 444 7899999987654 4454 48888988876 344544333 24555 67889998887764 33 68888
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|+..++ ..+.. . +...+....|+|+ |+.|+..+.+ ..|.+||+..+ ....+. ....+....|+|+|+
T Consensus 320 d~~g~~-~~~lt-~---~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 320 NADGSN-PRRIS-F---GGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred ECCCCC-eEEee-c---CCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCCCCCeECCCCC
Confidence 887665 32222 1 1245667889999 8888776643 25888887644 233333 233467889999999
Q ss_pred EEEEEeCC------CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1285 IIASGSAK------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1285 ~LasgS~D------g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.|+..+.+ ..+.++|++|.....+.. . +.+...+|+|.
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~--~-------~~~~~p~Wsp~ 433 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT--P-------GDASDPAWSPL 433 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC--C-------CCccCcccCCC
Confidence 87765442 257788888766655432 1 33556677763
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=111.06 Aligned_cols=237 Identities=14% Similarity=0.191 Sum_probs=150.7
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.+..++| ++.-..++++..|-+|++|+-.. +....+. ......|++ ++|-|.+..-++.+.-+-|.+
T Consensus 100 dlr~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtc----lawRPlsaselavgCr~gIci 166 (445)
T KOG2139|consen 100 DLRGVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTC----LAWRPLSASELAVGCRAGICI 166 (445)
T ss_pred ceeeEee--chhhhhhhhhccCcEEEEeccCC-CCCceec------chhhcceeE----EEeccCCcceeeeeecceeEE
Confidence 4667788 55556788889999999999754 1111111 122334555 999998776666655566999
Q ss_pred EECCCCce-----------eeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1162 WDLEKEQQ-----------MVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1162 WDl~t~~~-----------~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
|....... +.+.++.....+|++| .++++|..+++++ .|..|.|||..++...--..+. .+.+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsm-qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~ 241 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSM-QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGF 241 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEE-EEcCCCCEEeecccCcceEEEEcCCCCCcccccccC----CCce
Confidence 97653220 1112222223469999 6677888888765 5678999999988733222222 3689
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCceEEE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGT 1307 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~l~~ 1307 (1348)
+-+.|+|+ +.+|.+++-|+..++|.........+ .....+.|....|+|+|++|.-... |.-.+|. ..++....
T Consensus 242 slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 242 SLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred eeEEEcCC--CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 99999999 99999999999999996553322222 2233558999999999996544332 3334554 22221111
Q ss_pred -----EeccCC------cc-----cccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1308 -----IRYHHP------SF-----MAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1308 -----i~~~h~------~f-----~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
++. +. .. ..--.+...+++|.|.|.+||+.-..
T Consensus 318 ~~~~~~k~-~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 318 LRPQSIKR-VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cCccccee-eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 000 00 00 00124678999999999999987653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=111.22 Aligned_cols=258 Identities=15% Similarity=0.196 Sum_probs=171.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcc---cc-----cceEEEEecCCC--e
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGV---RC-----SNVVVDWQQQSG--Y 1149 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V---~s-----i~~~v~ws~~~~--~ 1149 (1348)
.-|+++.| ..+|++|+||..+|.|.++.-.... ++....+ .++.|...- .+ -.-.+.|.++++ .
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t---~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQT---EFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeee---eeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 46899999 7899999999999999999764422 2222332 233333221 11 111267876654 5
Q ss_pred EEEEECCCeEEEEECCCCc----------------------------------eeeeeecCCCCCCeEEEEEecCCCCEE
Q 000697 1150 LYASGEVSSIMLWDLEKEQ----------------------------------QMVNPIPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~----------------------------------~~v~~l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
++..+.|++|++|-+.... .+.+.+...+..-|.++ ..+.++..+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI-S~NsD~Et~ 179 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI-SVNSDKETF 179 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee-eecCccceE
Confidence 7788899999999875322 01112222233347888 566677777
Q ss_pred EEEeCCCeEEEEECCCCCeeeEeecCCC----CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc---eEEEe
Q 000697 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHT----QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTID 1268 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~~~~v~~~~~~~----~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~---v~t~~ 1268 (1348)
+++ .|=.|.+|.+.-......+..... .-..-|++..|+|. ..+.++-.+..|+|++-|+|...-+ .+.+.
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 765 577899999885443333331111 11245889999998 7888999999999999999954211 11111
Q ss_pred c------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEeccCCccc--------ccccCCeEEE
Q 000697 1269 A------------HRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFM--------AQKIGSVNCL 1326 (1348)
Q Consensus 1269 ~------------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~h~~f~--------~~~~~~Vtsl 1326 (1348)
. --..|+.+.|+++|+++++-+. -+|++||+ +.+++.++.. |...+ ....-.-..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhheeEE
Confidence 1 1236889999999999998655 58999994 6778888777 65321 1222334678
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|+.++.+++||+..+.+++|+
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEcCCcceEecccccceEEEec
Confidence 9999999999999999999885
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.7e-08 Score=117.30 Aligned_cols=215 Identities=11% Similarity=0.055 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCC--eEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAAD---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNG--NIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs---~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG--~IrIW 1109 (1348)
..+...+|+|||+.|+..+ .+..|.+|++.+++.... .... ..+....| ++||+.|+.. +.+| .|.+|
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~---~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC---CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEE
Confidence 4678999999999888654 245799999988754332 2222 23446788 8899988765 4455 47888
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC-Ce--EEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SS--IMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D-g~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ ++.+. +..+...+.. ..|+|++..|+.++++ |. |.++|+.++. ...+...... ..+.
T Consensus 273 d~~t--g~~~~------lt~~~~~~~~----~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~-~~~~- 336 (429)
T PRK03629 273 DLAS--GQIRQ------VTDGRSNNTE----PTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQ-NQDA- 336 (429)
T ss_pred ECCC--CCEEE------ccCCCCCcCc----eEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCC-ccCE-
Confidence 8755 33322 2223333333 8999999988877653 44 5555776665 3333322222 4455
Q ss_pred EecCCCCEEEEEeCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc---EEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD---IQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~---I~IWDlr~~ 1260 (1348)
.++++|+.++..+.+ ..|.+||+.+++ ... +... .......|+|+ |+.|+.++.++. +.++++..
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~-Lt~~----~~~~~p~~SpD--G~~i~~~s~~~~~~~l~~~~~~G- 407 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQV-LTDT----FLDETPSIAPN--GTMVIYSSSQGMGSVLNLVSTDG- 407 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-eEE-eCCC----CCCCCceECCC--CCEEEEEEcCCCceEEEEEECCC-
Confidence 678999988876543 358889998776 222 2111 12346789999 999988887765 66777752
Q ss_pred CcceEEEecCCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spd 1282 (1348)
.....+.+|.+.+...+|+|-
T Consensus 408 -~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCeEECccCCCCcCCcccCCC
Confidence 466777788888899999873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-08 Score=108.38 Aligned_cols=144 Identities=12% Similarity=0.207 Sum_probs=100.5
Q ss_pred EecCCCCEEEEEeC----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE--EECCCcEEE
Q 000697 1187 ASQVHGGQLAAGFV----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS--ASQAGDIQF 1254 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~----------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaS--gs~DG~I~I 1254 (1348)
.+++.|+.|+.-.. -|...+|.++.....+..+.. ...+.|.+++|+|+ |+.|++ |..++.|.+
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l--~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL--KKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec--cCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 45566665554322 244666666544433433322 12357999999999 777654 446789999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
||++ . +.+..+. ...+..+.|+|+|++|++|+. .|.|.+||.+ .+.+...+. ..++.++|+|
T Consensus 88 yd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----------~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----------SDATDVEWSP 153 (194)
T ss_pred EcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----------CcEEEEEEcC
Confidence 9997 3 5666664 567889999999999999874 3679999965 444444432 3578999999
Q ss_pred CCCEEEEEEC------CCeEEEcC
Q 000697 1331 YQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1331 dg~~Latgs~------Dg~I~IWd 1348 (1348)
+|++|++++. |+.++||+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEE
Confidence 9999999875 78888885
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=115.66 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=134.6
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.+||... ...+. +..+...+.. ..|+|++..|+..+ .+..|.+||+.+++ . ..+....+
T Consensus 182 ~~l~~~d~dg--~~~~~------lt~~~~~v~~----p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g- 246 (435)
T PRK05137 182 KRLAIMDQDG--ANVRY------LTDGSSLVLT----PRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPG- 246 (435)
T ss_pred eEEEEECCCC--CCcEE------EecCCCCeEe----eEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCC-
Confidence 3678888643 22222 3455555655 89999999888775 34689999998877 3 33333333
Q ss_pred CeEEEEEecCCCCEEE-EEeCCCe--EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000697 1181 SISALTASQVHGGQLA-AGFVDGS--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lv-sGs~DG~--VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG--~I~I 1254 (1348)
.+.+. .++++|+.++ +.+.+|. |.+||+.++. ... + ..+........|+|+ |+.|+..+. +| .|.+
T Consensus 247 ~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~-L---t~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTR-L---TDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCc-EECCCCCEEEEEEecCCCceEEEEECCCCc-eEE-c---cCCCCccCceeEcCC--CCEEEEEECCCCCCeEEE
Confidence 25566 6788998775 5555555 7777888776 322 2 223355677899999 888777663 44 5777
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
||+..+ ....+..+.+.+....|+|+|+.|+..+.+ ..|.+||.++.....+.. . ..+....|+|+
T Consensus 319 ~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~--~-------~~~~~p~~spD 387 (435)
T PRK05137 319 MNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS--G-------FLVEGPTWAPN 387 (435)
T ss_pred EECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC--C-------CCCCCCeECCC
Confidence 787654 334444445567778999999998876543 368888877665544432 1 23567899999
Q ss_pred CCEEEEEEC
Q 000697 1332 QVLLAAGSA 1340 (1348)
Q Consensus 1332 g~~Latgs~ 1340 (1348)
|++|+..+.
T Consensus 388 G~~i~~~~~ 396 (435)
T PRK05137 388 GRVIMFFRQ 396 (435)
T ss_pred CCEEEEEEc
Confidence 998877655
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=116.67 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=121.9
Q ss_pred cCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEE-EEeCCCe
Q 000697 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGS 1203 (1348)
Q Consensus 1128 ~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~DG~ 1203 (1348)
..+...+.+ .+|+|++..|+.++.+ ..|.+||+.+++ .. .+....+. +.+. .++++|+.++ +.+.+|.
T Consensus 192 ~~~~~~v~~----p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~-~l~~~~g~-~~~~-~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 192 LSSPEPIIS----PAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RR-VVANFKGS-NSAP-AWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ccCCCCccc----ceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EE-EeecCCCC-ccce-EECCCCCEEEEEEccCCC
Confidence 344455555 8999999998877632 469999999887 43 23222222 4555 6788998876 5677887
Q ss_pred EEEEECC--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCCcceEEEecCCCCeEEEEEe
Q 000697 1204 VRLYDVR--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1280 (1348)
Q Consensus 1204 VrvwDlr--~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~s 1280 (1348)
..+|.+. .+. ...+ ..+........|+|+ |+.|+..+. +|...+|.+.........+..+.......+|+
T Consensus 264 ~~Iy~~d~~~~~--~~~l---t~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 264 SQIYTVNADGSG--LRRL---TQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRIS 336 (427)
T ss_pred ceEEEEECCCCC--cEEC---CCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEEC
Confidence 6666543 333 2222 223345667889999 887776554 56777776642222233332233334567899
Q ss_pred CCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1281 RHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1281 pdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
|+|++|+..+.++ .|.+||+.+.....+.. . .......|+|+|++|+.++.++
T Consensus 337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 337 PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--------CCccCceECCCCCEEEEEEecC
Confidence 9999998776554 69999976555554433 1 1235679999999888877643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-07 Score=109.00 Aligned_cols=266 Identities=17% Similarity=0.227 Sum_probs=161.3
Q ss_pred CEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1048 PIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1048 ~~L-atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+++ ++-..+|.|.|.|.++.+.+.++.... ..-..+.| ++|++++++++.||.|.++|+.+ .+ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~--~~--~v~~--- 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKF--SPDGRYLYVANRDGTVSVIDLAT--GK--VVAT--- 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE---TT-SSEEEEEETTSEEEEEETTS--SS--EEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEe--cCCCCEEEEEcCCCeEEEEECCc--cc--EEEE---
Confidence 344 445578999999999999999998765 33344667 89999999999999999999976 22 3322
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC------CCCCeEEEEEecCCCCEEEEEe
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~------~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
+.. .....+ ++++++|.+++++. ..+.+.++|.++.+ .+..++.. ..+.+.++ ..++....++..-
T Consensus 74 i~~-G~~~~~----i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aI-v~s~~~~~fVv~l 146 (369)
T PF02239_consen 74 IKV-GGNPRG----IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAI-VASPGRPEFVVNL 146 (369)
T ss_dssp EE--SSEEEE----EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEE-EE-SSSSEEEEEE
T ss_pred Eec-CCCcce----EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeE-EecCCCCEEEEEE
Confidence 221 112233 88899999999886 78999999999998 88887653 23347778 5566677566555
Q ss_pred C-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCcceEEEe----cCCCC
Q 000697 1200 V-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTID----AHRGS 1273 (1348)
Q Consensus 1200 ~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~~~~~v~t~~----~h~~~ 1273 (1348)
. .|.|.+.|....+......-. .........|+|+ +++++.+ ..+..|-++|..+. +.+..+. .|...
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~---~g~~~~D~~~dpd--gry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIK---VGRFPHDGGFDPD--GRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGP 220 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TT--SSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETT
T ss_pred ccCCeEEEEEeccccccceeeec---ccccccccccCcc--cceeeecccccceeEEEeeccc-eEEEEeeccccccccc
Confidence 5 488999998766533222111 1256778999999 8877664 55678999999987 5555543 23444
Q ss_pred eEEEEEeCCC-CEEEEE---------eCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE---E
Q 000697 1274 LSALAVHRHA-PIIASG---------SAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG---S 1339 (1348)
Q Consensus 1274 VtsLa~spdg-~~Lasg---------S~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg---s 1339 (1348)
+..+ .||.. .+.+++ -....+.+|+ .+.+.+.++.. .. ++ .-+.-||+++++.+. +
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G-------~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QG-------GG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SS-------SS---EE--TT-SEEEEE-TT-
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC-CC-------Cc-ceeecCCCCccEEeeccCC
Confidence 4443 34432 222222 1123455666 45678888876 32 34 677889999999988 3
Q ss_pred C-CCeEEEcC
Q 000697 1340 A-DACVSIHS 1348 (1348)
Q Consensus 1340 ~-Dg~I~IWd 1348 (1348)
. .++|.|+|
T Consensus 291 ~~~~~v~viD 300 (369)
T PF02239_consen 291 PDADTVQVID 300 (369)
T ss_dssp SSHT-EEEEE
T ss_pred CCCceEEEEE
Confidence 3 46777765
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=110.99 Aligned_cols=277 Identities=11% Similarity=0.165 Sum_probs=173.5
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEE-------E---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAA-------D---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latg-------s---~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
|..... .+.++.|+|-|.+|.+- . ..-.+.+|+.+++.....++... ..-++..| +.|..+ ++
T Consensus 69 lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~---Q~~W~~qf--s~dEsl-~a 141 (566)
T KOG2315|consen 69 LCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM---QNGWVPQF--SIDESL-AA 141 (566)
T ss_pred EEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh---hcCccccc--ccchhh-hh
Confidence 333333 78899999999988762 1 13457899999976666665544 22257888 455543 33
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEE-----ECCCeEEEEECCCCceeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYAS-----GEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~g-----g~Dg~IrVWDl~t~~~~v~ 1172 (1348)
--..+.+.+|++...++... .-|...+.. +.+++... .+++- |.-+.|+||-..-+. .-.
T Consensus 142 rlv~nev~f~~~~~f~~~~~--------kl~~~~i~~----f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~ 208 (566)
T KOG2315|consen 142 RLVSNEVQFYDLGSFKTIQH--------KLSVSGITM----LSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQ 208 (566)
T ss_pred hhhcceEEEEecCCccceee--------eeeccceee----EEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccc
Confidence 23345799999865222211 113344444 66666532 23221 344679999876322 111
Q ss_pred eecC---CCCCCeEEEEEecCCCCEEEEEeC--C---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1173 PIPS---SSDCSISALTASQVHGGQLAAGFV--D---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1173 ~l~~---~~~~~VtsL~~~s~dg~~LvsGs~--D---------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
.+.. -....|.-. |......+|+..+. | .+++++++......+. + ...++|.++.|+|+
T Consensus 209 ~~a~ksFFkadkvqm~-WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L----~k~GPVhdv~W~~s- 281 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMK-WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-L----LKEGPVHDVTWSPS- 281 (566)
T ss_pred hhhhccccccceeEEE-eccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-c----CCCCCceEEEECCC-
Confidence 1110 001113332 43333334443332 2 4688888884443332 2 12489999999999
Q ss_pred CCCEEEE--EECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEE-cCCceEEEEeccC
Q 000697 1239 DPAKIVS--ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFS-LEGEQLGTIRYHH 1312 (1348)
Q Consensus 1239 ~g~~LaS--gs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd-~~g~~l~~i~~~h 1312 (1348)
++.+++ |-.--.+.|||++. .++..+. .++-+++-|+|+|++++.++- -|.|-||| .+-+.+..+..
T Consensus 282 -~~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-- 354 (566)
T KOG2315|consen 282 -GREFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-- 354 (566)
T ss_pred -CCEEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc--
Confidence 776654 44567899999994 4666654 677789999999998887765 47899999 45677777776
Q ss_pred CcccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1313 PSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1313 ~~f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
..-+-+.|+|||.+++|++. |+.++||+
T Consensus 355 --------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 355 --------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred --------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34577899999999998876 78888884
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-06 Score=99.61 Aligned_cols=276 Identities=14% Similarity=0.173 Sum_probs=171.7
Q ss_pred EEEEECC----CcEEEEEC--CCCcEE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----CCeEEEEeccCCCCc
Q 000697 1050 VVAADEN----ERIKIWNY--EEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVASC----NGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1050 Latgs~d----g~I~VWd~--~t~~~l--~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----DG~IrIWdl~~~~~~ 1117 (1348)
+++|+.. +.|.+|++ ++++.. ..+... ...+.+++ ++++++|+++.. +|.|..|++....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES----SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC----CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence 4566655 78999987 444332 222222 35677888 789999999877 579999999774455
Q ss_pred eeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee---eec---------CCCCCCeEE
Q 000697 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN---PIP---------SSSDCSISA 1184 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~---~l~---------~~~~~~Vts 1184 (1348)
.+.+..... . ..... .++.++++.+++++. .+|.|.++++........ .+. ........+
T Consensus 76 L~~~~~~~~-~--g~~p~----~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPS-G--GSSPC----HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEE-S--SSCEE----EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeecc-C--CCCcE----EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 555532221 1 11112 378889999999997 689999999987420211 111 112233567
Q ss_pred EEEecCCCCEEEEEe-CCCeEEEEECCCCCe-ee--EeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCC
Q 000697 1185 LTASQVHGGQLAAGF-VDGSVRLYDVRTPDM-LV--CSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRN 1259 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs-~DG~VrvwDlr~~~~-~v--~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~ 1259 (1348)
+ .++|+++++++.. ....|.+|++..... +. ..+.. .....-+.+.|+|+ ++++++. ..++.|.+|++..
T Consensus 149 v-~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pd--g~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 149 V-VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPD--GKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp E-EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TT--SSEEEEEETTTTEEEEEEEET
T ss_pred E-EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCC--cCEEEEecCCCCcEEEEeecc
Confidence 7 6788988777654 456899999986552 21 11111 22467899999999 7766554 4678899999982
Q ss_pred CC---cceEEEecC------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEE
Q 000697 1260 HK---DAYLTIDAH------RGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1260 ~~---~~v~t~~~h------~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
.. +.+..+... ......+.++|+|++|.++. .+..|.+|+++. ..+..+.. .. ........++
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~~Pr~~~ 298 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGKFPRHFA 298 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSSSEEEEE
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCCCccEEE
Confidence 21 222233321 12578999999999877654 567899999732 23333322 11 0123478999
Q ss_pred EeCCCCEEEEEEC-CCeEEEcC
Q 000697 1328 FHPYQVLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1328 fspdg~~Latgs~-Dg~I~IWd 1348 (1348)
++|+|++|+++.. ++.|.+|+
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEE
Confidence 9999999998876 67888873
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=134.71 Aligned_cols=194 Identities=15% Similarity=0.295 Sum_probs=149.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..|.++.=||...+-+||+.||.|++|.|..++.+..++...+ ..|+.+.| +..|+.+..+..||.+.+|....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCceeeeccCCceeecccCC--
Confidence 5677888899999999999999999999999999998886553 78999999 67899999999999999999842
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEecC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+.. ...+.|...... +.|- +..++++| +++.+.+||..... .++. ..|.++ ++++ .+-|
T Consensus 2283 ---k~~---~s~qchnk~~~D----f~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l-~~~P 2346 (2439)
T KOG1064|consen 2283 ---KPY---TSWQCHNKALSD----FRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVL-AYAP 2346 (2439)
T ss_pred ---cce---eccccCCccccc----eeee--ehhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEE-EEcC
Confidence 223 334567766666 4443 24555553 67899999976443 1333 455454 9999 6678
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
..++|++|+.+|.|++||+|..+ ..+.++. ++ . ..++++|+..|.++||++... ..++++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrq-l~h~~~~------------~~-~--~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA------------LD-T--REYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHH-HHHHhhh------------hh-h--hheeeccCcccceEEEEcccc-chhhcCc
Confidence 89999999999999999999877 4444321 33 3 679999999999999999976 5555554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-07 Score=110.58 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
...|.++|...+ ..+.+..+. ..+.+..| ++||++|+.++.+ ..|.+||+.+ ++...+ ..+..
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSR---EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLAT--GQREKV------ASFPG 234 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCC---CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEe------ecCCC
Confidence 445777787633 344455455 56778888 8899999887654 4799999866 433332 22233
Q ss_pred cccccceEEEEecCCCeEEEE-ECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEE
Q 000697 1133 GVRCSNVVVDWQQQSGYLYAS-GEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRL 1206 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~g-g~D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~Vrv 1206 (1348)
.+.. ..|++++..|+.+ +.+ ..|++||+.++. ...+..+... .... .++++|+.|+..+.. | .|.+
T Consensus 235 ~~~~----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGA----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccc----eEECCCCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 3333 7899999888765 333 459999998776 3344433222 3444 567889888766543 3 5788
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1207 wDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
+|+.+++ ..... .+...+....|+|+ |+.++.++.++ .|.+||+.++ . ...+... .......|+|+|
T Consensus 307 ~d~~~~~-~~~l~----~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~-~~~~~p~~spdg 376 (417)
T TIGR02800 307 MDADGGE-VRRLT----FRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDT-GLDESPSFAPNG 376 (417)
T ss_pred EECCCCC-EEEee----cCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC-C-eEEccCC-CCCCCceECCCC
Confidence 8887665 22221 12356778899999 88888888775 7889998864 2 3333322 234456899999
Q ss_pred CEEEEEeCCC---cEEEEEcCCceEEEEec
Q 000697 1284 PIIASGSAKQ---LIKVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1284 ~~LasgS~Dg---~I~Vwd~~g~~l~~i~~ 1310 (1348)
+.|+..+.++ .+.+.+.+|+....+..
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 9887776653 46666777877666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-09 Score=132.25 Aligned_cols=224 Identities=18% Similarity=0.244 Sum_probs=158.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|.++.- ++...+-+||+.||.|++|.... ...+.+|++... ..|.. +.|+.+|+..-++..||.+.+
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~--s~vtr----~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGN--SRVTR----SRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccC----CCeEEEeeccCc--chhhh----hhhcccCCceeeeccCCceee
Confidence 3555544 56778899999999999999844 344555665443 55666 678889999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
|.+. .+ .....+.|... .....+.. ..+++++ .++.+.+||......... .++.|.+.++++++-|.
T Consensus 2278 ~q~~-pk-~~~s~qchnk~-~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2278 WQAS-PK-PYTSWQCHNKA-LSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSL---VHTCHDGGATVLAYAPK- 2347 (2439)
T ss_pred cccC-Cc-ceeccccCCcc-ccceeeee---hhhhccccCCCCCcccchhcccCcccce---eeeecCCCceEEEEcCc-
Confidence 9987 44 67778887665 66664442 4555543 478999999875542211 23578899999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEecc--CCcc
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYH--HPSF 1315 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~--h~~f 1315 (1348)
...|++|+.+|.|++||++.. +.+++++. ++ ...++++|+..|.|+||++++ ..+.++... +.+|
T Consensus 2348 -~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2348 -HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred -ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 999999999999999999976 67666664 45 567999999999999999664 333333221 3444
Q ss_pred cccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1316 MAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1316 ~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
.. +.+ ..+-.. ..+.|.+|+.||+
T Consensus 2416 Fr-~~g--~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FR-NIG--MQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred hh-hcC--ceeeec-cCceEEEecCCCC
Confidence 22 222 222222 3356777777874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-08 Score=107.72 Aligned_cols=255 Identities=15% Similarity=0.257 Sum_probs=169.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----cEEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVA 1100 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-----~~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tg 1100 (1348)
...|+++.|...|.+|++|+..|.|.+|.-+.. +....|++|.+. ...|..+.|.-......++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 367999999999999999999999999976532 334457777642 136888999643444567778
Q ss_pred eCCCeEEEEeccCCCCceeEE-------------------------------------eeeecc-cCCCCcccccceEEE
Q 000697 1101 SCNGNIRIWKDYDQKDKQKLV-------------------------------------TAFSSI-QGHKPGVRCSNVVVD 1142 (1348)
Q Consensus 1101 s~DG~IrIWdl~~~~~~~~lv-------------------------------------s~~~~l-~~h~~~V~si~~~v~ 1142 (1348)
+.|.+|++|.++... .+++ .+.+.. ..|...+.+ +.
T Consensus 106 tNdktiKlWKiyekn--lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS----iS 179 (460)
T COG5170 106 TNDKTIKLWKIYEKN--LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS----IS 179 (460)
T ss_pred cCCceeeeeeeeccc--chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee----ee
Confidence 899999999997631 1110 000111 223333333 56
Q ss_pred EecCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCC----CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000697 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC----SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1216 (1348)
Q Consensus 1143 ws~~~~~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~~~~~----~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v 1216 (1348)
++.+...+++ .+|=.|.+|+++.... .+..++.|.-. -|++-.+.+...+.|.-.+..|.|++-|+|...-+.
T Consensus 180 ~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 180 FNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 6666555554 5667799998875431 23444444221 256665555567788889999999999999443111
Q ss_pred E---eec---------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC------------C
Q 000697 1217 C---STR---------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------------G 1272 (1348)
Q Consensus 1217 ~---~~~---------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~------------~ 1272 (1348)
. .+. .+.+-.+.|..+.|++. |+++++-+. -+|+|||.+..+.++.++.-|. .
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 1 110 01122357889999998 999988765 4899999999889999997663 2
Q ss_pred Ce---EEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1273 SL---SALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1273 ~V---tsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.| ..+.|+.+.+.+.+|+.....-+|-
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeec
Confidence 22 3577888888888888877666665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-07 Score=113.98 Aligned_cols=203 Identities=16% Similarity=0.102 Sum_probs=129.6
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~---Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.+||... ..... +..+...+.+ ..|+|++..|+.++. ...|++||+.+++ .. .+....+
T Consensus 184 ~~l~i~D~~g--~~~~~------lt~~~~~v~~----p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~-~l~~~~g- 248 (433)
T PRK04922 184 YALQVADSDG--YNPQT------ILRSAEPILS----PAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RE-LVASFRG- 248 (433)
T ss_pred EEEEEECCCC--CCceE------eecCCCcccc----ccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EE-EeccCCC-
Confidence 4688888743 22222 3344445555 899999999888763 3469999998876 32 2322222
Q ss_pred CeEEEEEecCCCCEEE-EEeCCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCc--EEE
Q 000697 1181 SISALTASQVHGGQLA-AGFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGD--IQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lv-sGs~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~--I~I 1254 (1348)
...+. .++++|+.++ +.+.+| .|++||+.+++ ... + ..+.......+|+|+ |+.|+.++ .+|. |.+
T Consensus 249 ~~~~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~-l---t~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 249 INGAP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTR-L---TNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CccCc-eECCCCCEEEEEEeCCCCceEEEEECCCCC-eEE-C---ccCCCCccceEECCC--CCEEEEEECCCCCceEEE
Confidence 23455 6788998775 445555 59999998876 322 2 223345567899999 88877666 4455 555
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+|+..+ + ...+..+.......+|+|+|+.|+..+.++ .|.+||..+.....+.. . .......|+|+
T Consensus 321 ~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~--~-------~~~~~p~~spd 389 (433)
T PRK04922 321 VAASGG-S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP--G-------SLDESPSFAPN 389 (433)
T ss_pred EECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC--C-------CCCCCceECCC
Confidence 666554 2 333333334455789999999988765433 68999976555544432 1 12345689999
Q ss_pred CCEEEEEEC
Q 000697 1332 QVLLAAGSA 1340 (1348)
Q Consensus 1332 g~~Latgs~ 1340 (1348)
|++|+..+.
T Consensus 390 G~~i~~~s~ 398 (433)
T PRK04922 390 GSMVLYATR 398 (433)
T ss_pred CCEEEEEEe
Confidence 998877665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-07 Score=110.34 Aligned_cols=196 Identities=15% Similarity=0.240 Sum_probs=141.9
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccc--cceEEEEec--------------CCCeEEEEEC
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC--SNVVVDWQQ--------------QSGYLYASGE 1155 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s--i~~~v~ws~--------------~~~~Ll~gg~ 1155 (1348)
+...+++....||.+|||+...++-..+.. ....-.+...+ .++.+..+| +...++-|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 456789999999999999986632222211 11111111111 001111111 3345666778
Q ss_pred CCeEEEEECCCCceeeeeec-CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1156 VSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1156 Dg~IrVWDl~t~~~~v~~l~-~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.|.|.+|++..++ ....+. +.+...|+++ .+..+-..|.+++.|+.+..|+..... ..+.++.. ...+.++++
T Consensus 79 ~g~v~~ys~~~g~-it~~~st~~h~~~v~~~-~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~---~~~~~sl~i 152 (541)
T KOG4547|consen 79 QGSVLLYSVAGGE-ITAKLSTDKHYGNVNEI-LDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQ---KPLVSSLCI 152 (541)
T ss_pred CccEEEEEecCCe-EEEEEecCCCCCcceee-ecccccCceEecCCceeEEEEecccce-eeeeeccC---CCccceEEE
Confidence 8999999999998 777776 4556668988 556677899999999999999999887 66766544 478999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----CCEEEE-EeCCCcEEEEEcCC
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----APIIAS-GSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----g~~Las-gS~Dg~I~Vwd~~g 1302 (1348)
+|+ |..+++|+ +.|++||+.+. +.+.+|.+|.++|+++.|--. |.++.+ ...+.-|.+|-.++
T Consensus 153 s~D--~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPD--GKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCC--CCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999 99999987 68999999998 899999999999999999877 555544 45566678887543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.9e-09 Score=119.65 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=155.9
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+..|.+|. ..|..+.-+ .+.+-+++++.|++|++|.+.....+.....+.-+++.|+.+|.++++ -.+..
T Consensus 727 rL~nf~GH~---~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf----L~~lr 797 (1034)
T KOG4190|consen 727 RLCNFTGHQ---EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF----LADLR 797 (1034)
T ss_pred eeecccCcH---HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee----eeccc
Confidence 345677888 777777763 467789999999999999997643333322233567889999999544 33433
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeec-C---CCCCCeEEEEEecCCCCEEEEE-eCCCeEEEEECCCCCeeeEeecCC-
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIP-S---SSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH- 1222 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~-~---~~~~~VtsL~~~s~dg~~LvsG-s~DG~VrvwDlr~~~~~v~~~~~~- 1222 (1348)
+ +++.||.|.+||.-.+. .+..+. . .....|.|+ -+.+..++++| +...+|+++|.|..+ .++.++..
T Consensus 798 ~--i~ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl--~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcn 871 (1034)
T KOG4190|consen 798 S--IASCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCL--ENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCN 871 (1034)
T ss_pred e--eeeccCcceeecccccc-hhHhhhcCcccCCCceeEec--ccCcchheeeeccchhhheeeeccccc-ceeeEEecc
Confidence 3 34568889999987666 444222 1 122234554 23356677776 678899999999876 44444433
Q ss_pred -CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEE-EE-
Q 000697 1223 -TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV-FS- 1299 (1348)
Q Consensus 1223 -~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~V-wd- 1299 (1348)
.+....+.++++.+. |++++.|-.+|.|.+.|.|++ +.+..++.....+..++- |....++....|.++.| |.
T Consensus 872 a~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehh
Confidence 345577899999998 999999999999999999998 778777765554444443 45567788888889988 88
Q ss_pred cCCceEEEEec
Q 000697 1300 LEGEQLGTIRY 1310 (1348)
Q Consensus 1300 ~~g~~l~~i~~ 1310 (1348)
.+|....+.+.
T Consensus 948 ldgimh~q~kp 958 (1034)
T KOG4190|consen 948 LDGIMHLQDKP 958 (1034)
T ss_pred cCCeeeeccCC
Confidence 67766655554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.6e-06 Score=96.59 Aligned_cols=252 Identities=14% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeE
Q 000697 1036 KGTKTALLQPFSPIVVAADE----NERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~----dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~I 1106 (1348)
..+.-++++|++++|.++.+ +|.|..|++... +.+.+..... .....+++ ++++++|+++. .+|.|
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~--~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAV--DPDGRFLYVANYGGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEE--CTTSSEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEE--ecCCCEEEEEEccCCeE
Confidence 56788999999999998876 578999988764 2333443222 45667888 78999999887 58999
Q ss_pred EEEeccCCCCceeEEeeeecccC--------CCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCce-e--eeee
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQG--------HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQ-M--VNPI 1174 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~--------h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~-~--v~~l 1174 (1348)
.++++... +............+ ...... .+.++|+++++++.. ....|.+|++..... . ...+
T Consensus 112 ~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H----~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 112 SVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPH----QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp EEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEE----EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred EEEEccCC-cccceeeeecccCCCCCcccccccccce----eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 99999763 33222211111111 111222 378999999999985 345799999876541 1 2334
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEE-eCCCeEEEEECCCCCe---eeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDM---LVCSTRPHT---QQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsG-s~DG~VrvwDlr~~~~---~v~~~~~~~---~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
....+..-..+ .++++++++++. -.++.|.+|++..... ......... ........|+++|+ |++|+++.
T Consensus 187 ~~~~G~GPRh~-~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd--g~~lyvsn 263 (345)
T PF10282_consen 187 KVPPGSGPRHL-AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD--GRFLYVSN 263 (345)
T ss_dssp ECSTTSSEEEE-EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT--SSEEEEEE
T ss_pred ccccCCCCcEE-EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC--CCEEEEEe
Confidence 44445557888 677888877554 5578899999982221 112221211 11236889999999 88777665
Q ss_pred -CCCcEEEEEcCCC-C--cceEEEecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 000697 1248 -QAGDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSL 1300 (1348)
Q Consensus 1248 -~DG~I~IWDlr~~-~--~~v~t~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~ 1300 (1348)
.++.|.+|++... + +.+..+.......+.++++|+|++|+++. .++.|.+|++
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 5577999999432 1 23344444445589999999999888776 5678999985
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=102.36 Aligned_cols=249 Identities=13% Similarity=0.157 Sum_probs=160.4
Q ss_pred CCeEEEEEcC---CCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1036 KGTKTALLQP---FSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1036 ~~I~sl~fsp---dg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
+.+..|.|.. +|. .|+-+..+|.|.++.....+....+++-....-.+. ++...+++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455566642 344 567778899999998775555444544331112222 33333378888899999999998544
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeEEEEEe
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTAS 1188 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~ 1188 (1348)
... .. +...+..+.|..+.+. ..|+.. .+.+++||+|+.+..||++.....+.. .+.|..+ |.+|...
T Consensus 150 ~t~--~~---le~vq~wk~He~E~Wt----a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G-V~SI~ss 219 (339)
T KOG0280|consen 150 ETE--MV---LEKVQTWKVHEFEAWT----AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG-VVSIYSS 219 (339)
T ss_pred cce--ee---eeecccccccceeeee----eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc-eEEEecC
Confidence 322 22 2223567788887776 555433 357888999999999999943325544 4455555 9999788
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-c---ce
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-D---AY 1264 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~---~v 1264 (1348)
++.+.++++|+.|-.|++||.|+..+.+... .-.+.|..+..+|.-.+..++++-.+ -.+|-+..... + ..
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVL 294 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheee
Confidence 8889999999999999999999655444332 12378999999997222334444444 46777776542 2 33
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEe-CCCcEE-EEE
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGS-AKQLIK-VFS 1299 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~-Vwd 1299 (1348)
...+.|.+-...-.|.....++||++ .|+.++ +|-
T Consensus 295 ~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred eccccccceeeccccccccceeeeeeccccceeeeee
Confidence 44556666666667754456788864 455544 664
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=110.64 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=141.8
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecC--CCCCCeEEEEEe-------------------cCCCCEEEEEeCCCeEE
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPS--SSDCSISALTAS-------------------QVHGGQLAAGFVDGSVR 1205 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~--~~~~~VtsL~~~-------------------s~dg~~LvsGs~DG~Vr 1205 (1348)
..+++....||.+|+||..+++ ....+.. +..+.-++..|. +.+...++-|...|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 4567777899999999999887 5555432 111112222121 12345788899999999
Q ss_pred EEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1206 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1206 vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+|+...++ +...+ .-..|.+.|+++.++.. -..|.+++.|+.+..|+.... ..+..+......+.+++++|||..
T Consensus 84 ~ys~~~g~-it~~~-st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 84 LYSVAGGE-ITAKL-STDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEEecCCe-EEEEE-ecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCE
Confidence 99999988 54444 33478899999999887 889999999999999999987 788899988899999999999999
Q ss_pred EEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCC-----CCEEEEE-ECCCeEEEc
Q 000697 1286 IASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-----QVLLAAG-SADACVSIH 1347 (1348)
Q Consensus 1286 LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspd-----g~~Latg-s~Dg~I~IW 1347 (1348)
+++++ +.|++||+ +++.+..|.+ |. ++|++++|--. |.++.++ ..+..+.+|
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftg-h~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTG-HG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecC-CC-------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 99998 78999995 4677777877 65 89999999877 5555544 335556665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-08 Score=114.51 Aligned_cols=238 Identities=12% Similarity=0.178 Sum_probs=169.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCcee--------EEeeeecccCCCCcccccceEEEEecCCCeEEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK--------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~--------lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~ 1152 (1348)
....++.| +...+++++||.||.++|-++.+...... -.+--+++.||...|.- +.|+.+...|-+
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v----vTWNe~~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV----VTWNENNQKLTT 88 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE----EEeccccccccc
Confidence 47889999 78899999999999999999865321111 11123567889888876 999988888888
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000697 1153 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1232 (1348)
Q Consensus 1153 gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl 1232 (1348)
+..+|.|.||-+-++.-+...+.....+-|.++ .|..+|..+.....||.|.+=.+..+..--+.++ ......+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-sWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-----g~~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-SWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-----GQLLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEE-EEcCCCcEEEEEEccCCEEEEeeccceecchhcc-----hheccce
Confidence 889999999999888722333445556668888 7788999999999999998887776552222221 1345578
Q ss_pred EEecCCCCCEEEEEECCCcEEEEEcCCCC------cceEE----EecCCCCeEEEEEe--------CCCCEEEEEeCCCc
Q 000697 1233 SFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLT----IDAHRGSLSALAVH--------RHAPIIASGSAKQL 1294 (1348)
Q Consensus 1233 ~~sp~~~g~~LaSgs~DG~I~IWDlr~~~------~~v~t----~~~h~~~VtsLa~s--------pdg~~LasgS~Dg~ 1294 (1348)
.|+++ .+.++.+-.+|.+.+||....- .+... +......|..+.|. |+.+.+|.+-.+|.
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 89999 8888888889999999976321 11111 11112235555553 58889999999999
Q ss_pred EEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1295 IKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1295 I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
+.|..... .....+.. .-.+.+..|+++|.+||.+|.|
T Consensus 241 ~QiMR~eND~~Pvv~dt---------gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---------GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhcCCCCCeEEec---------ccEeecceecCCCcEEEEccCc
Confidence 99887332 22222222 1468899999999999999875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-06 Score=105.41 Aligned_cols=234 Identities=11% Similarity=0.099 Sum_probs=144.6
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.|.++|.+.+. ...+..+. ..+....| ++||+.|+..+.+ ..|.+|++.+ ++.+.+ ......+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~---~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~l------~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR---EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQI------TNFEGLN 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCC---CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCC--CCEEEc------cCCCCCc
Confidence 47777877444 34444444 57888899 7899988776543 3688888865 443333 2222222
Q ss_pred cccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEEE
Q 000697 1135 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1208 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~VrvwD 1208 (1348)
.. ..|+|++..|+.. ..+| .|++||+.++. . ..+..+... .... .++++|+.++..+. +| .|.++|
T Consensus 246 ~~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~-~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 246 GA----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-L-SRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CC----eEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988754 3444 68889998876 3 344433322 4455 57889988776654 33 577778
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G--~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+.+++ ..+.. ..+ .......|+|+ |+.++..+.+ | .|.+||+.++ .. ..+.. ........|+|+|+.
T Consensus 318 ~~~g~-~~~lt--~~~--~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 318 VNGGR-AERVT--FVG--NYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred CCCCC-EEEee--cCC--CCccceEECCC--CCEEEEEEccCCceEEEEEECCCC-CE-EEccC-CCCCCCceECCCCCE
Confidence 77765 22221 111 23345789999 8888776643 3 4888898876 22 33322 222235689999998
Q ss_pred EEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1286 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1286 LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
++..+.+ ..+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRLPLPT-AQ-------GEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 8776543 347777888876655554 32 45666777763
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=102.01 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=174.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCC
Q 000697 1036 KGTKTALLQPFSPIVVAAD-----------ENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs-----------~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~D 1103 (1348)
..|.-+.|||.+++|+|-+ +...++|||+.+|...+.|.....+ ..+. -..| +.|+++++.-..+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frW--S~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRW--SHDDKYFARMTGN 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEe--ccCCceeEEeccc
Confidence 5799999999999999864 2357999999999999988874311 1222 2345 8899999987775
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE--CC---CeEEEEECCCCceeeeeecCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EV---SSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg--~D---g~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.|.||+... ..++ ..-.-...+|+. ..|+|.+..|+-=. .+ ..+.+..+.+.+ .+++-..++
T Consensus 327 -sisIyEtps----f~ll---d~Kslki~gIr~----FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfn 393 (698)
T KOG2314|consen 327 -SISIYETPS----FMLL---DKKSLKISGIRD----FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFN 393 (698)
T ss_pred -eEEEEecCc----eeee---cccccCCccccC----cccCCCcceEEEEcccccCCcceEEEEecCccc-eeeecccee
Confidence 699998633 2222 001112344555 78888755554332 11 235556665555 444443332
Q ss_pred CCCeEEEEEecCCCCEEEEEe----------CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1179 DCSISALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs----------~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
-+ =..| .++..|++|+.-- .=..+.|+.++.....+... .. +..|...+|-|. |+.+++-+.
T Consensus 394 Vs-DckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-el---ke~vi~FaWEP~--gdkF~vi~g 465 (698)
T KOG2314|consen 394 VS-DCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-EL---KESVIAFAWEPH--GDKFAVISG 465 (698)
T ss_pred ee-ccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ec---chheeeeeeccC--CCeEEEEEc
Confidence 21 1123 5677787776421 11246677777766445444 23 378999999999 777666553
Q ss_pred C---CcEEEEEcCCC-C--cceEEEecCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEcCCceEEEEeccCCcccccc
Q 000697 1249 A---GDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1249 D---G~I~IWDlr~~-~--~~v~t~~~h~~~VtsLa~spdg~~Lasg---S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~ 1319 (1348)
+ .++.+|-+.+. . ..+..+. ....+.+.|+|.|++++.+ |..|.+.++|.+-..+..... .. |
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~e-----h 537 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PE-----H 537 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cc-----c
Confidence 3 56899988732 1 3344443 3457889999999988776 456889999976422222211 11 1
Q ss_pred cCCeEEEEEeCCCCEEEEEECCC
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
...+.+.|.|.|+|++|+++-.
T Consensus 538 -~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 -FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -cccccceECCCCCEEEEeeehh
Confidence 3467899999999999998743
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=117.35 Aligned_cols=191 Identities=16% Similarity=0.287 Sum_probs=142.9
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
.+...++.++.+..+-+||... + .+. ..+.............+-.+.+.-++++|+--+.|.+|+..... .-
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~--~--~~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p 168 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN--S--SVL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KP 168 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc--C--cee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Cc
Confidence 3667888888888999999854 1 111 11111111111111223345555677888888999999988444 33
Q ss_pred eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000697 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1251 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~ 1251 (1348)
..+.+|.+. |-++ .++.+|.++++.+.|.++|+|++.+.+.... ..-+|...|..+++.|. .+++++.|.+
T Consensus 169 ~~l~GHeG~-iF~i-~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---~~fgHsaRvw~~~~~~n----~i~t~gedct 239 (967)
T KOG0974|consen 169 IRLKGHEGS-IFSI-VTSLDGRYIASVSDDRSIRLWPIDSREVLGC---TGFGHSARVWACCFLPN----RIITVGEDCT 239 (967)
T ss_pred ceecccCCc-eEEE-EEccCCcEEEEEecCcceeeeecccccccCc---ccccccceeEEEEeccc----eeEEeccceE
Confidence 357777776 8898 6788999999999999999999998874431 22378999999999975 9999999999
Q ss_pred EEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1252 IQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.++|+... ..+..+..|. ..+..++.+++....+|++.|+.+++|+..
T Consensus 240 crvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 240 CRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99997663 4666888885 479999999999999999999999999954
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=105.66 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=131.7
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.++|... ...+. +..+...+.. ..|++++..++.+..+ ..|++||+.++. .. .+.....
T Consensus 170 ~~l~~~d~~g--~~~~~------l~~~~~~~~~----p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~-~~~~~~~- 234 (417)
T TIGR02800 170 YELQVADYDG--ANPQT------ITRSREPILS----PAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-RE-KVASFPG- 234 (417)
T ss_pred ceEEEEcCCC--CCCEE------eecCCCceec----ccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EeecCCC-
Confidence 3577777643 22222 2334444444 7899999998887533 479999998876 32 2222222
Q ss_pred CeEEEEEecCCCCEEEE-EeCCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000697 1181 SISALTASQVHGGQLAA-GFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lvs-Gs~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG--~I~I 1254 (1348)
.+.++ .++++|+.|+. .+.+| .|++||+.++. ..... .+........|+|+ |+.|+..+. +| .|.+
T Consensus 235 ~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~----~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLT----NGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccce-EECCCCCEEEEEECCCCCccEEEEECCCCC-EEECC----CCCCCCCCEEECCC--CCEEEEEECCCCCceEEE
Confidence 25556 57889887764 44444 58888988765 22221 22244556789998 887776554 34 4777
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+|+..+ + ...+..+........|+|+|++++.++.++ .|.+||+.+.....+.. . ......+|+|+
T Consensus 307 ~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------~~~~~p~~spd 375 (417)
T TIGR02800 307 MDADGG-E-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T--------GLDESPSFAPN 375 (417)
T ss_pred EECCCC-C-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C--------CCCCCceECCC
Confidence 787755 2 344554556678889999999998887765 78888976655544443 1 12344689999
Q ss_pred CCEEEEEECCC
Q 000697 1332 QVLLAAGSADA 1342 (1348)
Q Consensus 1332 g~~Latgs~Dg 1342 (1348)
+++|+.++.++
T Consensus 376 g~~l~~~~~~~ 386 (417)
T TIGR02800 376 GRMILYATTRG 386 (417)
T ss_pred CCEEEEEEeCC
Confidence 99888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-05 Score=93.01 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=165.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----------CCeEEEEe
Q 000697 1046 FSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC----------NGNIRIWK 1110 (1348)
Q Consensus 1046 dg~~Latgs~d-----g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----------DG~IrIWd 1110 (1348)
++..+.+.+.. ++|.|.|.++++.+.++.....+ ..+ + ++|++.|+++.. +..|.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----NPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----cee-E--CCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34445544433 89999999999999999876622 233 5 789998888765 78999999
Q ss_pred ccCCCCceeEEeeeecccCC-CCcccccceEEEEecCCCeEEEEE-C-CCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-E-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h-~~~V~si~~~v~ws~~~~~Ll~gg-~-Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
..+.+-..++. +... ...+-...-.+.++++++++++.. . +..|-+.|+.+++ .+.++...... .-.
T Consensus 84 ~~t~~~~~~i~-----~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp~~~--~vy-- 153 (352)
T TIGR02658 84 PQTHLPIADIE-----LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVPDCY--HIF-- 153 (352)
T ss_pred CccCcEEeEEc-----cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCCCCc--EEE--
Confidence 97732222222 1110 000000011278899999999885 4 7899999999999 88888763322 111
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCee-eEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC----
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK---- 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~-sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---- 1261 (1348)
-..+ ..+.+-+.||.....-+....+. ......+.+....+. .-.+.+. +|.++..... |.|.+.|+....
T Consensus 154 ~t~e-~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 154 PTAN-DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred EecC-CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceec
Confidence 1122 22334456776666554432211 111111100000000 0034552 2777776666 999999965431
Q ss_pred cceEEEec-------CCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEE-cCCceEEEEeccCCcccccccCCe
Q 000697 1262 DAYLTIDA-------HRGSLSALAVHRHAPIIASGS----------AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1262 ~~v~t~~~-------h~~~VtsLa~spdg~~LasgS----------~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
..+..+.. ..+.+.-+++|++++.+.... ..+.|.++| .+++.+..+.. ...+
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~ 301 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEI 301 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCce
Confidence 23333221 233445599999998776632 124799999 45677777765 1478
Q ss_pred EEEEEeCCCC-EEEEEE-CCCeEEEcC
Q 000697 1324 NCLTFHPYQV-LLAAGS-ADACVSIHS 1348 (1348)
Q Consensus 1324 tslafspdg~-~Latgs-~Dg~I~IWd 1348 (1348)
..++++||++ +|++.. .++.|.|+|
T Consensus 302 ~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 302 DSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 9999999999 777666 478888875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.9e-08 Score=114.93 Aligned_cols=287 Identities=14% Similarity=0.165 Sum_probs=190.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+++.++.++|.|+-+|.++.-| +.|-|++.. ....-+..-.+ -.|-.+.|.+++...+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 46788999999999999998665 455566543 32222222221 357778886666666766666666778999865
Q ss_pred CC-CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1114 QK-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1114 ~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ...+++ +.+|...++. +.|+++...+++. +-|-.+..||+++....+..+..-+.. -+.+.+.-.+
T Consensus 101 ss~~aIef~-----lhghsraitd----~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~ 170 (1081)
T KOG0309|consen 101 SSSNAIEFV-----LHGHSRAITD----INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKD 170 (1081)
T ss_pred CCccceEEE-----EecCccceec----cccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccC
Confidence 33 233444 7889999998 8898887665554 688999999999876455555543333 5666565566
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
++.++ .+....|++||.|.+.......+ +|...|..+.|... ....+.+++.||+|++||..+..+.-.......
T Consensus 171 p~vla-sshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 171 PNVLA-SSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cchhh-hccCCceEEEeccCCCcceEEec---ccceeeehHHHhhh-hhhhhcccCCCCceeeecccccccccceecccc
Confidence 66665 45567899999998886776554 46789999999876 567899999999999999985432222222345
Q ss_pred CCeEEEEEeCCCCEEEEE--eCCCcEEEEEc-----------CCceEEEEeccCCcccccccCCeEEEEEeCC-------
Q 000697 1272 GSLSALAVHRHAPIIASG--SAKQLIKVFSL-----------EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY------- 1331 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~-----------~g~~l~~i~~~h~~f~~~~~~~Vtslafspd------- 1331 (1348)
.+|..-.+-|-|.-.+.- -.+..+.+++. ....+.++.+ |+ ..|...-|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~-------D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HD-------DVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cc-------hHHHHHhhhhcccccCCC
Confidence 566666777765522221 11123444331 1356778888 65 44444444222
Q ss_pred ---CCEEEEEECCCeEEEc
Q 000697 1332 ---QVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1332 ---g~~Latgs~Dg~I~IW 1347 (1348)
.-.|+|-+.|.++++|
T Consensus 318 d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CccceeEEEeecCCceEee
Confidence 1369999999999999
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=109.04 Aligned_cols=205 Identities=14% Similarity=0.228 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
-..|+++...--|..++....|.-+|++.|..+..|.... +.++++.. ++-..+|++|+.+|.|..||..... .
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~---~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ks-r 209 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS---GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKS-R 209 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccccccccccccc---ccceeeee--cCccceEEecccCceEEEecchhhh-h
Confidence 3456666444434444446678888999999999998877 78999998 5677899999999999999987622 1
Q ss_pred eeEEeeeecccCCCC-----cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1118 QKLVTAFSSIQGHKP-----GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~-----~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
...+..-..+..|.. .|++ +.|+.+|-.+.+|..+|.|.|||+++.+ ++..-.-....+|..+.|...++
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTa----l~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTA----LKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred heeeecccccCCCccccccCcceE----EEecCCceeEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccccCC
Confidence 122211122223332 2444 8898888889999999999999999988 55544444455788886655544
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
.--+.......++|||-.+++.... +. ....+..+|+-|+ +..+++|-.++.+..|=+...
T Consensus 285 q~~v~S~Dk~~~kiWd~~~Gk~~as-iE----pt~~lND~C~~p~--sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECTGKPMAS-IE----PTSDLNDFCFVPG--SGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEecchHHhhhcccccCCceee-cc----ccCCcCceeeecC--CceEEEecCCCcceeEEcccc
Confidence 4444455667899999999985433 32 2356999999999 889999999988888877654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-06 Score=104.14 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=141.3
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CC--eEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.|.++|.+.... +.+..+. ..+.+..| ++||+.|+..+. ++ .|.+||+.+ ++.+.+ ....+ ..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~---~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~t--g~~~~l---t~~~g---~~ 264 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP---EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYT--QVREKV---TSFPG---IN 264 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC---CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCC--CCeEEe---cCCCC---Cc
Confidence 566667654332 3344444 57888899 889998887654 33 577778755 443333 11221 12
Q ss_pred cccceEEEEecCCCeEEEE-ECCCe--EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEEE
Q 000697 1135 RCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1208 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~g-g~Dg~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~VrvwD 1208 (1348)
.. ..|+|++..|+.. +.+|. |+++|+.+++ ...+..+.. ..... .++++|+.++..+. +| .|.++|
T Consensus 265 ~~----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~-~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GA----PRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA-IDTEP-SWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CC----eeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC-Cccce-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988765 55564 8888988776 344444332 24555 57789988776554 34 466677
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc--EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+.+++ ..... ..+ ......+|+|+ |+.|+..+. ++. |.++|+.++ . ...+.... ......|+|+|+.
T Consensus 337 l~~g~-~~~Lt--~~g--~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~~-~d~~ps~spdG~~ 406 (448)
T PRK04792 337 LASGK-VSRLT--FEG--EQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETG-A-MQVLTSTR-LDESPSVAPNGTM 406 (448)
T ss_pred CCCCC-EEEEe--cCC--CCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCC-C-eEEccCCC-CCCCceECCCCCE
Confidence 77665 22221 111 23345789999 777766554 443 555677765 2 23333221 1224579999997
Q ss_pred EEEEeCC-C--cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1286 IASGSAK-Q--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1286 LasgS~D-g--~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
|+..+.+ + .+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 407 I~~~~~~~g~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~Wsp~ 447 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSIDGRFKARLPA-GQ-------GEVKSPAWSPF 447 (448)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 7665543 3 37777888887777765 33 45667778763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=103.49 Aligned_cols=241 Identities=15% Similarity=0.233 Sum_probs=159.8
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-----EeCCCeEEEEeccC
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-----ASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-----gs~DG~IrIWdl~~ 1113 (1348)
++..|+.|+.+.+--. .+.+.+|+..+-+.+. -+-|. ..|+.+.+.+.+....+++ +|.-+.|+||....
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~-~kl~~---~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ-HKLSV---SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCCcccee-eeeec---cceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 4667888877443222 5579999987632221 12233 6788999854434455554 35556899999853
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EE--CC---------CeEEEEECCCCceeeeeecCCCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SG--EV---------SSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg--~D---------g~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
+......+.+.+ -.+..+.+.|++-+.-|++ ++ -| .++++.++..+. +...+. ..++
T Consensus 204 --~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~--k~GP 272 (566)
T KOG2315|consen 204 --EGQHQPVANKSF------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLL--KEGP 272 (566)
T ss_pred --ccccchhhhccc------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecC--CCCC
Confidence 111111011111 1222234889877664433 22 22 358888888655 555544 3667
Q ss_pred eEEEEEecCCCCEEEE--EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEE
Q 000697 1182 ISALTASQVHGGQLAA--GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLD 1256 (1348)
Q Consensus 1182 VtsL~~~s~dg~~Lvs--Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWD 1256 (1348)
|.++ .|++++..|++ |..--.+.|||++..- +..+ - .++=+++-|+|. |++++.++-+ |.|-|||
T Consensus 273 Vhdv-~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~---egpRN~~~fnp~--g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 273 VHDV-TWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--P---EGPRNTAFFNPH--GNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred ceEE-EECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--C---CCCccceEECCC--CCEEEEeecCCCCCceEEEe
Confidence 9999 66788876654 6677899999999764 3333 1 267788999999 9998887754 8899999
Q ss_pred cCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCCceEEEE
Q 000697 1257 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA------KQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~------Dg~I~Vwd~~g~~l~~i 1308 (1348)
+.+. +.+..+.... -+-+.|+|||.+|+|++. |+.++||+.+|..+..-
T Consensus 343 v~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 343 VPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred ccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 9985 7888887554 456899999999998864 68899999999877643
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=100.61 Aligned_cols=211 Identities=17% Similarity=0.276 Sum_probs=126.0
Q ss_pred CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEEC-----CCeEEEEECCC
Q 000697 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLEK 1166 (1348)
Q Consensus 1093 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg~IrVWDl~t 1166 (1348)
.++-+++++.||.+.+.+.+. ...+. +.+. .|.+. ++.++...+..+.+++. -+..++|+++.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~---~~i~~~~~~~-----as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK---DLALM---SRIPSIHSGS-----ASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred cCCceEecCCCceEEEEechH---HHhhh---hhcccccccc-----cccceeecccEEecCCcceEeeccceeeecccc
Confidence 457799999999999998743 10100 0011 11111 11222223444444321 13455666654
Q ss_pred CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1167 ~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
.+ ....-...-+ .|++++..+...+++++|+.||.+.+||.|....++..+ ..|+..|..+.|+|. ++..|+++
T Consensus 169 ~~-t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l---~ahk~~i~eV~FHpk-~p~~Lft~ 242 (319)
T KOG4714|consen 169 IK-TLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL---KAHKAEIWEVHFHPK-NPEHLFTC 242 (319)
T ss_pred cc-cccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH---HHhhhhhhheeccCC-CchheeEe
Confidence 43 1111111122 388886666667888999999999999999886555544 456799999999999 89999999
Q ss_pred ECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEE
Q 000697 1247 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
+.||.+.-||..+. .+ .++++. ..+..| ++|..+...-. -++........|+++
T Consensus 243 sedGslw~wdas~~--~l-------------~i~~~~---------s~~s~W-LsgD~v~s~i~-i~~ll~~~~~Sinsf 296 (319)
T KOG4714|consen 243 SEDGSLWHWDASTT--FL-------------SISNQA---------SVISSW-LSGDPVKSRIE-ITSLLPSRSLSINSF 296 (319)
T ss_pred cCCCcEEEEcCCCc--eE-------------EecCcc---------cccccc-ccCCcccceEe-eeccccccceeeeee
Confidence 99999999997742 11 122221 234455 34444333111 122222333456655
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. .|..|++|+.-+-|++++
T Consensus 297 DV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 297 DV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ec--cCceEEeccccceEEEec
Confidence 54 577899999888888763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=103.23 Aligned_cols=248 Identities=13% Similarity=0.198 Sum_probs=166.8
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecc-cCCCCcccccceEEEEecC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQ 1146 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~~h~~~V~si~~~v~ws~~ 1146 (1348)
..+..++++. +.|++... .+...-+++.+.|.++|||--.+...-. ..+ .....+++. +.+..+
T Consensus 15 ~ll~~~eG~~---d~vn~~~l--~~~e~gv~~~s~drtvrv~lkrds~q~w------psI~~~mP~~~~~----~~y~~e 79 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAIL--IPKEEGVISVSEDRTVRVWLKRDSGQYW------PSIYHYMPSPCSA----MEYVSE 79 (404)
T ss_pred hhhhhhcCch---hhhhhhee--ccCCCCeEEccccceeeeEEeccccccC------chhhhhCCCCceE----eeeecc
Confidence 3455677777 67777776 3566779999999999999865522211 112 122334444 788888
Q ss_pred CCeEEEEECCCeEEEEECC----CCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC
Q 000697 1147 SGYLYASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~----t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
...|++|-++|++.-+.+. +.. ..+....|... |..+ .++.....+++.+.|..+.---.+.+..+-... +
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~-~~r~~~~h~~~-v~~~-if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~ 154 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMT-FLKDYLAHQAR-VSAI-VFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--F 154 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcc-hhhhhhhhhcc-eeeE-EecCCceeEEEeccccceEEEeeccCCcccceE--e
Confidence 8899999999999888543 344 45555566554 8888 666777888888888877544444443211100 0
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
...-+++.+. -.+...|...|.|..-.+... -.++.++.+|.+.++++.|.+...++.+|..|..|.+||+-
T Consensus 155 ---~~~~t~~~~d----~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 155 ---ETPASALQFD----ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ---eccCCCCcee----eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 0111111111 114455666666655544321 26888999999999999999999999999999999999976
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|..-..... .+|...|..+..-+.-+.|.+++.||.|-+|+
T Consensus 228 g~~g~~~el------~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 228 GRKGTAYEL------QGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred CCcceeeee------ccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 654333222 12447888888888889999999999999996
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-05 Score=87.08 Aligned_cols=271 Identities=13% Similarity=0.216 Sum_probs=171.7
Q ss_pred CCcEEEEECCCCc-EEEEe--eCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEeccCCCCceeEEeeeecccC
Q 000697 1056 NERIKIWNYEEDT-LLNSF--DNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQG 1129 (1348)
Q Consensus 1056 dg~I~VWd~~t~~-~l~~~--~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~ 1129 (1348)
++.|.+|++++.. .+... -... ..++-|+| +++++.|+++.. +|.|-.|.+....|...++... .+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc---CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCC
Confidence 5679999887421 11111 1122 46788999 789999998865 4789999887655666665221 1222
Q ss_pred CCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeee--ecCCCC--------CC-eEEEEEecCCCCEEEE
Q 000697 1130 HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNP--IPSSSD--------CS-ISALTASQVHGGQLAA 1197 (1348)
Q Consensus 1130 h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~--l~~~~~--------~~-VtsL~~~s~dg~~Lvs 1197 (1348)
+.. . -++.++++.+++++. ..|.|.++-++..-..... ...|.+ .+ +.+. -+.|+++++++
T Consensus 89 ~~p--~----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a-~~tP~~~~l~v 161 (346)
T COG2706 89 SPP--C----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSA-NFTPDGRYLVV 161 (346)
T ss_pred CCC--e----EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcccee-eeCCCCCEEEE
Confidence 221 2 378889999999996 5689999988653201111 111111 11 3344 57789988887
Q ss_pred EeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCcceEEEecC-----
Q 000697 1198 GFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH----- 1270 (1348)
Q Consensus 1198 Gs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h----- 1270 (1348)
... --.|.+|++..+. ........-.....-+.|.|+|+ +++..+.+ -+++|.+|........+..++.+
T Consensus 162 ~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 162 PDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred eecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 653 3479999998655 22111111123467889999999 88776655 58999999998743333443322
Q ss_pred ----CCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC-C
Q 000697 1271 ----RGSLSALAVHRHAPIIASGSA-KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-A 1342 (1348)
Q Consensus 1271 ----~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D-g 1342 (1348)
......+.++++|++|.++.. ...|.+|.++ +..+..+.. .. .+...-..+.|++++++|++++.| .
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCcCCccceeCCCCCEEEEEccCCC
Confidence 346778999999999988743 2367788743 444544433 22 112336789999999999999874 4
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
.|.+|
T Consensus 314 ~i~vf 318 (346)
T COG2706 314 NITVF 318 (346)
T ss_pred cEEEE
Confidence 56665
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=95.97 Aligned_cols=264 Identities=16% Similarity=0.124 Sum_probs=158.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
++..+++++.+|.+..+|.++|+.+....... .+.+.-. -.++.++.++.+|.|..||..+ ++.... ..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~---v~~~~v~v~~~~g~l~a~d~~t--G~~~W~--~~ 172 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPL---VANGLVVVRTNDGRLTALDAAT--GERLWT--YS 172 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCE---EECCEEEEECCCCeEEEEEcCC--CceeeE--Ec
Confidence 46788888899999999999999887765433 2222111 1345778888899999999876 332211 00
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CCe---EEEE-EecCCCCEEEEE
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CSI---SALT-ASQVHGGQLAAG 1198 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~---~~V---tsL~-~~s~dg~~LvsG 1198 (1348)
............ .... .++.++++..+|.+..+|.++++ .+-....... ..+ ..+. .....++.++++
T Consensus 173 -~~~~~~~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 173 -RVTPALTLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred -cCCCceeecCCC-CCEE--ECCEEEEECCCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 111000000000 0111 13578888888999999999887 5543321100 000 0000 000135678888
Q ss_pred eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCCeEEE
Q 000697 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSAL 1277 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~VtsL 1277 (1348)
+.+|.++.||.++++. ..... . ........ . +..++.++.+|.+..+|..++ +.+...... .....+.
T Consensus 248 ~~~g~l~a~d~~tG~~-~W~~~-~----~~~~~p~~--~--~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 248 SYQGRVAALDLRSGRV-LWKRD-A----SSYQGPAV--D--DNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAP 316 (377)
T ss_pred EcCCEEEEEECCCCcE-EEeec-c----CCccCceE--e--CCEEEEECCCCeEEEEECCCC-cEEEccccccCCccccC
Confidence 8999999999998873 32221 1 11122222 2 567888889999999999887 454433221 1122222
Q ss_pred EEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1278 AVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1278 a~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .+..+++++.+|.|.++| .+|+.+..++. +.+ ....+..+.. ..|+.++.||.|..|
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~~~------~~~~sp~~~~--~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-DGS------GIASPPVVVG--DGLLVQTRDGDLYAF 376 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCC------ccccCCEEEC--CEEEEEeCCceEEEe
Confidence 23 356888899999999999 46888888876 331 1122223333 347788899999865
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=105.28 Aligned_cols=260 Identities=19% Similarity=0.292 Sum_probs=196.0
Q ss_pred HhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhch---hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhc
Q 000697 441 EQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ---CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510 (1348)
Q Consensus 441 ~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~---~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL 510 (1348)
+|+++.+.+-++-+..++|| |.+|...+.|... .-++.|--.|.+.-.-+.-.....+..|..|.|++||
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 57777777766666666677 7888888877532 2233444333333322233334446789999999999
Q ss_pred cCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCC-cchhHHHHhhchH
Q 000697 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH-RRGQEACIEAGLI 589 (1348)
Q Consensus 511 ~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~-~~gq~~~~~~~~~ 589 (1348)
+++..+++--+++-++.|...-+.|..-+++.+...-.+..|+.......+|. ++-+|+.||++- |.....-+ ..++
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~v-~~iL 239 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDVV-APIL 239 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHHH-HHHH
Confidence 99999999999999999999999999999999999999999987664334444 455788999886 66665543 4457
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcC
Q 000697 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1348)
Q Consensus 590 ~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1348)
..+..+|. ..+++|.+=+|-+|+.|-++.++.-.+.++.++..+|..+|...++-|+..++-++|.++..
T Consensus 240 p~L~~ll~-------~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--- 309 (514)
T KOG0166|consen 240 PALLRLLH-------STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--- 309 (514)
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---
Confidence 78888888 77999999999999999999889888899999999999999999999999999999997721
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHhhhcc-CCChhhHHHHHHHHHHHHHhc
Q 000697 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS-DGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~-D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
.+..-+.-+.......|..+.. -...-.|+|+.+.+|-+...-
T Consensus 310 -----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 310 -----------SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred -----------cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 1112122344445555666555 555669999999999877643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-06 Score=100.70 Aligned_cols=242 Identities=12% Similarity=0.050 Sum_probs=139.0
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCE---EEEEeCCCe--EEEEeccCCCCceeEEeeeecccCCC
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL---LLVASCNGN--IRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~---L~tgs~DG~--IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
..|.+.|.+.+.. +.+.... ..+.+-.| +|||+. +++...+|. |.+.++.. ++.+.+ ....
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~l------t~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKKI------LALQ 230 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCC--CCceEe------ecCC
Confidence 4566677764433 3343333 45566788 789874 335555554 55556544 444443 1122
Q ss_pred CcccccceEEEEecCCCeEEEEEC-CC----eEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeE
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGE-VS----SIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSV 1204 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~-Dg----~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~V 1204 (1348)
+.... ..|+|||..|+..++ +| .+..||+..+. .....+........... .++++|+.|+..+ .+|..
T Consensus 231 g~~~~----p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 231 GNQLM----PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred CCccc----eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECCCCCc
Confidence 22222 789999998887653 22 34457766421 01222222221223455 6789999877665 46755
Q ss_pred EEE--ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1205 RLY--DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1205 rvw--Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
.+| ++.........+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.++ +. ..+......+....|
T Consensus 306 ~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe---ccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEE
Confidence 555 443211112222 122356678899999 8887766543 36999999876 33 334333445678999
Q ss_pred eCCCCEEEEEeC---CCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1280 HRHAPIIASGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1280 spdg~~LasgS~---Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
+|+|+.|+..+. ...|.++|+++.....+.. .. +.+...+|+|..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~-------g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS-------GEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC-------CcccCceecCCC
Confidence 999997765432 3568888887766555543 22 445667787753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-05 Score=84.08 Aligned_cols=251 Identities=11% Similarity=0.183 Sum_probs=164.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADE---NERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~---dg~I~VWd~~t--~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIW 1109 (1348)
..++-|+|+|++++|.++.. +|.|..|.++. |+. ..+......+.+-+.+++ ++++++|+++.. .|.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEE--CCCCCEEEEEEccCceEEEE
Confidence 66889999999999988754 57888888875 433 222222222244578888 789999998864 5889999
Q ss_pred eccCCCCceeEEeeeecccCCCCc----------ccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee--eecC
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPG----------VRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN--PIPS 1176 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~----------V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~--~l~~ 1176 (1348)
.+... |...... + ...|.+. +.. ..+.|++.++++.. .--.|.+|++..+. ... ....
T Consensus 117 p~~~d-G~l~~~v--~-~~~h~g~~p~~rQ~~~h~H~----a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v 187 (346)
T COG2706 117 PLQAD-GSLQPVV--Q-VVKHTGSGPHERQESPHVHS----ANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEV 187 (346)
T ss_pred EcccC-Cccccce--e-eeecCCCCCCccccCCccce----eeeCCCCCEEEEeecCCceEEEEEcccCc-ccccccccc
Confidence 98663 3322221 1 1122222 333 67889999999885 33459999998665 221 1111
Q ss_pred CCCCCeEEEEEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCC---C---CCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1177 SSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPH---T---QQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~---~---~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
..+..-..| .++|++++....++ +++|-+|........+..++.+ . ....+...|+++++ |++|.++...
T Consensus 188 ~~G~GPRHi-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d--GrFLYasNRg 264 (346)
T COG2706 188 KPGAGPRHI-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD--GRFLYASNRG 264 (346)
T ss_pred CCCCCcceE-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC--CCEEEEecCC
Confidence 233346788 77889998776654 8999999998742223322221 1 12457789999999 9999887642
Q ss_pred -CcEEEEEcCCCCcceE---EEecCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcC
Q 000697 1250 -GDIQFLDIRNHKDAYL---TIDAHRGSLSALAVHRHAPIIASGSAK-QLIKVFSLE 1301 (1348)
Q Consensus 1250 -G~I~IWDlr~~~~~v~---t~~~h~~~VtsLa~spdg~~LasgS~D-g~I~Vwd~~ 1301 (1348)
..|.+|.+...+..+. ....+...-+.+.++++|++|+++..+ ..|.+|..+
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4688888875432232 223344457899999999988888765 468898854
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-06 Score=90.72 Aligned_cols=263 Identities=8% Similarity=0.001 Sum_probs=163.0
Q ss_pred CCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1055 ENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
....+-+|+..+.. .+..+++-. .+-..|+ ....+|+.||..|...+|...+.++-..+. ..|..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y~g~~-----F~p~s~~--~kc~~la~gG~~g~fd~~~~~tn~~h~~~c------d~snn 116 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFYTGMT-----FTPGSFI--NKCVTLADGGASGQFDLFACNTNDGHLYQC------DVSNN 116 (344)
T ss_pred ceeeeEeccccCCchhhEEeeeccc-----ccchHhh--ccccEEEeccccceeeeecccCcccceeee------ccccc
Confidence 34457777765442 233333222 1122232 245689999999999999997644433322 22222
Q ss_pred cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1133 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
.|.- .-.+.-....+..++.|.++++.+++.+. ......... -.+.++ ..+++++++++.+....|-.|.+...
T Consensus 117 ~v~~---~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~~h~~~-~~~ns~-~~snd~~~~~~Vgds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 117 DVTL---VKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFAVHNQN-LTQNSL-HYSNDPSWGSSVGDSRRVFRYAIDDE 190 (344)
T ss_pred chhh---hhhhcccccceeeccCCcceeEEEEecCc-ccceeeccc-cceeee-EEcCCCceEEEecCCCcceEEEeCCc
Confidence 2211 01111124467778889999998887655 222222211 125666 67889999999999999999998754
Q ss_pred C-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE----ecCCCCeEEEEEeCCCC--E
Q 000697 1213 D-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI----DAHRGSLSALAVHRHAP--I 1285 (1348)
Q Consensus 1213 ~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~----~~h~~~VtsLa~spdg~--~ 1285 (1348)
. ...++... .....=.+..|+.. ...+|+++.||++.|||+|..+.+..+. ..|.+.++.+.|++.|. +
T Consensus 191 sey~~~~~~a--~t~D~gF~~S~s~~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 191 SEYIENIYEA--PTSDHGFYNSFSEN--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred cceeeeeEec--ccCCCceeeeeccC--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE
Confidence 3 23332212 22344567788887 8899999999999999999875444333 35889999999999776 4
Q ss_pred EEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1286 IASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1286 LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
|...-.-+.+.|-|+ ++...+.+....+.+.......|....|+.++....+.+.
T Consensus 267 Lf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 267 LFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 444444578899994 4555555544122233333455888888887766555544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-05 Score=100.77 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=187.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEE----ECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIW----NYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VW----d~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
....|.++.+-++...|+.+..+|.|.+. +..+. +.+..+ + .+|.+++| +||+++|+..+.+|++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d---~GI~a~~W--SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---D---SGILAASW--SPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---c---CcEEEEEE--CCCcCEEEEEeCCCEEE
Confidence 34789999999999999999999999999 44433 223322 2 68999999 89999999999999888
Q ss_pred EEeccC-----------CCCceeEEe--------eeecccCC---------C------Cc--ccccceEEEEecCCCeEE
Q 000697 1108 IWKDYD-----------QKDKQKLVT--------AFSSIQGH---------K------PG--VRCSNVVVDWQQQSGYLY 1151 (1348)
Q Consensus 1108 IWdl~~-----------~~~~~~lvs--------~~~~l~~h---------~------~~--V~si~~~v~ws~~~~~Ll 1151 (1348)
+..-.- ..+..+.++ .|+.-.+. . +. .......++|-.||.+++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 754210 011111110 11000000 0 00 111234589999999999
Q ss_pred EEEC---C---CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC---CCeEEEEECCCCCeeeEeecCC
Q 000697 1152 ASGE---V---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1152 ~gg~---D---g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~---DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
+++- . +.||||+.+ +. +........+--.++ .|.|.|+++++.-. ...|.+|..+.-+.-...++ .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l-~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~ 300 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGAL-SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-F 300 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCc-cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-C
Confidence 9853 2 579999976 33 333332323323456 67899999988764 35688887664432222221 1
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecC-CCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH-RGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h-~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
......|..+.|+++ +..|+....|. |.+|-..+.. -..+.+... ...+..+.|||... .|..++.+|.+..++
T Consensus 301 ~~~~~~v~~l~Wn~d--s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 301 DPEEEKVIELAWNSD--SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceeeEEEECCC--CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 233468999999999 99999987665 9999988652 122233322 23455699999655 566666667776654
Q ss_pred cC-----C--------ceEEEEeccCCc----c------------cccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LE-----G--------EQLGTIRYHHPS----F------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~-----g--------~~l~~i~~~h~~----f------------~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. + ..+..+.+ ..- | .-.-..+|.+++|++++..+|+-..||.|.+|.
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 21 1 11222222 110 0 012346899999999998899999999998873
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-05 Score=94.44 Aligned_cols=275 Identities=13% Similarity=0.147 Sum_probs=173.4
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------------CcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---------------ERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---------------g~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~t 1099 (1348)
..|..+.|+|.+++|.+-+.. ..+.|||..+|..+..|.....+. ... -+.| +.++.+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~--s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKF--SIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeee--eecchhhhh
Confidence 568899999999999986533 359999999999999998766321 133 5677 567766654
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEE-----EECCCeEEEEECCCCceeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYA-----SGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~-----gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
-. ...+.|+++.. ... ...++.+. ...+.. ..|+|.++ .|+. .+..+.+++|.+.... .+.
T Consensus 149 vv-~~sl~i~e~t~---n~~-~~p~~~lr--~~gi~d----FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~ 216 (561)
T COG5354 149 VV-GSSLYIHEITD---NIE-EHPFKNLR--PVGILD----FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLV 216 (561)
T ss_pred hc-cCeEEEEecCC---ccc-cCchhhcc--ccceee----EEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eee
Confidence 42 23699999722 111 11112222 122333 56666532 2222 2567889999988766 443
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEE-----------eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAG-----------FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsG-----------s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
+-.--.-+ =..+ -++..|++++.- .....+.+++++.....+.. +-.++|...+|.|. ++
T Consensus 217 tk~lfk~~-~~qL-kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~--S~ 287 (561)
T COG5354 217 TKNLFKVS-GVQL-KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----DLKDPVHDFTWEPL--SS 287 (561)
T ss_pred eeeeEeec-ccEE-EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----cccccceeeeeccc--CC
Confidence 32211111 1233 344555544421 12356888888855422221 23589999999999 55
Q ss_pred EEE--EEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCceEE--EEeccCCc
Q 000697 1242 KIV--SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLG--TIRYHHPS 1314 (1348)
Q Consensus 1242 ~La--Sgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd~~g~~l~--~i~~~h~~ 1314 (1348)
.++ +|-.+..+.++|++.. ....+ ....=+.+.|+|++++++.++-| |.|-+||..|+.+. .+.+
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---- 359 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---- 359 (561)
T ss_pred ceeEEecccccceeecccccc--eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec----
Confidence 544 4457888999999954 33333 34455678899999998887655 67999997665443 3444
Q ss_pred ccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
...+-+.|+|++.++.+... |..|+||+
T Consensus 360 ------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 360 ------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ------CCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 34566789999998877643 78899985
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-06 Score=95.21 Aligned_cols=274 Identities=13% Similarity=0.142 Sum_probs=173.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-----------
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG----------- 1104 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG----------- 1104 (1348)
-++..++|||.|.+|++.. ...|.+|+...+..+..+... .|..+.| ++.+.+|.|=+..+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~-----~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP-----DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cchhheeecCcchheehhh-ccceEEccccchhheeeeecC-----Cceeccc--CcccceeeeeccCCccChhhccCCc
Confidence 4678899999999999877 456999998887777766654 4888999 88999999876544
Q ss_pred ----eEEEEeccCCCCceeEEeeeecccCCCCc--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC
Q 000697 1105 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1105 ----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~--V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.+.|||... + .++.+ +.....+ .+. .+.|+-++.+.+-- ....++|+++ +.......+..-.
T Consensus 105 ~~~n~~~vwd~~s--g--~iv~s---f~~~~q~~~~Wp---~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 105 TSKNNVFVWDIAS--G--MIVFS---FNGISQPYLGWP---VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred cccCceeEEeccC--c--eeEee---ccccCCcccccc---eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence 389999865 2 33422 2222222 221 37888777665444 3346899997 3330122222222
Q ss_pred CCCeEEEEEecCC--CCEEEE-----EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----
Q 000697 1179 DCSISALTASQVH--GGQLAA-----GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS---- 1247 (1348)
Q Consensus 1179 ~~~VtsL~~~s~d--g~~Lvs-----Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs---- 1247 (1348)
...|... .++|. +..|+. +..++.+++|.+-.+..+ ....-+. ..=..+.|++. |+++++--
T Consensus 173 ~~gi~dF-sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk---~~~~qLkW~~~--g~~ll~l~~t~~ 245 (561)
T COG5354 173 PVGILDF-SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFK---VSGVQLKWQVL--GKYLLVLVMTHT 245 (561)
T ss_pred ccceeeE-EecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEe---ecccEEEEecC--CceEEEEEEEee
Confidence 2236666 33443 333432 467889999999865532 2211111 23346788887 77665321
Q ss_pred -------CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCCceEEEEeccCCccccc
Q 000697 1248 -------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG--SAKQLIKVFSLEGEQLGTIRYHHPSFMAQ 1318 (1348)
Q Consensus 1248 -------~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~ 1318 (1348)
....+.+++++.. .+.......++|...+|.|++..+++. -.+..+.++|+.|+....+..
T Consensus 246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe-------- 315 (561)
T COG5354 246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE-------- 315 (561)
T ss_pred ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--------
Confidence 1245788888844 333333567899999999998866554 578889999999986554433
Q ss_pred ccCCeEEEEEeCCCCEEEEEECC---CeEEEcC
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSAD---ACVSIHS 1348 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~D---g~I~IWd 1348 (1348)
..=+.+.|+|++++++.++-| |.|-+||
T Consensus 316 --~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 316 --QKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred --cccccccccCcccEEEEecCCccccceEEec
Confidence 334556778888777776654 4566654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-05 Score=95.24 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=158.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
.+..+++++.+|.|..+|..+|+.+..+.... ........ +++.+++++.+|.+..+|..+ ++.... .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~---~ 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE---RLSGGVGA----DGGLVFVGTEKGEVIALDAED--GKELWR---A 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC---CcccceEE----cCCEEEEEcCCCEEEEEECCC--CcEeee---e
Confidence 36788889889999999999999988776555 21223333 567888999999999999866 443221 1
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC----eEEEEEecCCCCEEEEEeCC
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS----ISALTASQVHGGQLAAGFVD 1201 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~----VtsL~~~s~dg~~LvsGs~D 1201 (1348)
.. ...+.+... . .++.+++++.+|.|..||.++++ .+-.+....... ..+... .+..++.+..+
T Consensus 132 ~~---~~~~~~~p~---v--~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~ 199 (377)
T TIGR03300 132 KL---SSEVLSPPL---V--ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAG 199 (377)
T ss_pred cc---CceeecCCE---E--ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEE---ECCEEEEECCC
Confidence 11 112222111 1 35688888889999999999988 665554322110 011111 13477888899
Q ss_pred CeEEEEECCCCCeeeEeecCCC--CCC--CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEE
Q 000697 1202 GSVRLYDVRTPDMLVCSTRPHT--QQV--ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1277 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~~~~~~~--~h~--~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsL 1277 (1348)
|.+..+|.++++..- ...... +.. ..+..+.-+|...+..+++++.+|.+..||..++ +.+..... ......
T Consensus 200 g~v~ald~~tG~~~W-~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~--~~~~~p 275 (377)
T TIGR03300 200 GKLVALDLQTGQPLW-EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDA--SSYQGP 275 (377)
T ss_pred CEEEEEEccCCCEee-eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeecc--CCccCc
Confidence 999999999887322 111100 000 0011111111001457888888999999999987 45444431 112222
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1278 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1278 a~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+ .+..++.++.||.+..+|. +|+.+..... .. . ....+... .+..|++++.||.|.++|
T Consensus 276 ~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~---~---~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 276 AV--DDNRLYVTDADGVVVALDRRSGSELWKNDE-LK---Y---RQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eE--eCCEEEEECCCCeEEEEECCCCcEEEcccc-cc---C---CccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 22 4567777888999999995 6766654421 11 0 11222222 356788888899888774
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=110.65 Aligned_cols=246 Identities=13% Similarity=0.217 Sum_probs=159.5
Q ss_pred eEEEEEcCCC--CEEEEEECCCcEEEEECCC---CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1038 TKTALLQPFS--PIVVAADENERIKIWNYEE---DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1038 I~sl~fspdg--~~Latgs~dg~I~VWd~~t---~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
|-.+.|++.. ++-++......-.||++.. ...-..+.+|. ..|+.+.|. .+....+++++.|-.|..||+.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---raitd~n~~-~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---RAITDINFN-PQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---cceeccccC-CCCCcceeeccccccceeeecc
Confidence 3344454432 2333333344556787653 22333456777 899999994 4677899999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
......-. ...-..... .+.|+-.++.+++.+..+.|++||.+.+..++..+++|... |.++.+.....
T Consensus 146 Sp~~p~ys------~~~w~s~as----qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 146 SPHRPFYS------TSSWRSAAS----QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS-VNSIDFNRFKY 214 (1081)
T ss_pred CCCcceee------eecccccCc----eeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee-eehHHHhhhhh
Confidence 62211111 111111222 38999999999999999999999999887578888886555 77776555556
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE---------ECCCcEEEEEcCCCCcc
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA---------SQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg---------s~DG~I~IWDlr~~~~~ 1263 (1348)
..+.+.+.||+|+.||.......-....+ ...+|..-++.|-+.|.++.-- ..+..-..|+..+...+
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 78899999999999998855422111111 1245555555565222222211 11223344555555578
Q ss_pred eEEEecCCCCeEEEEEeCCC--------C--EEEEEeCCCcEEEEEcC
Q 000697 1264 YLTIDAHRGSLSALAVHRHA--------P--IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg--------~--~LasgS~Dg~I~Vwd~~ 1301 (1348)
+++|.+|.+.|..+-|-..+ + .|++-|.|.++++|-+.
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 99999999888766664322 2 69999999999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-05 Score=102.43 Aligned_cols=288 Identities=14% Similarity=0.188 Sum_probs=174.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC---------------C--------CcEEEEeeCCCCC------------
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYE---------------E--------DTLLNSFDNHDFP------------ 1079 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~---------------t--------~~~l~~~~~h~~~------------ 1079 (1348)
+.+|.+++||||+..|+..+.+|++.+-+-+ . |++-..|+|...+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4789999999999999999989998876421 0 1122223221100
Q ss_pred ---------CCCeEEEEEEeeCCCCEEEEEeC---C---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe
Q 000697 1080 ---------DKGISKLCLVNELDVSLLLVASC---N---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1144 (1348)
Q Consensus 1080 ---------~~~ItsL~f~ns~d~~~L~tgs~---D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws 1144 (1348)
...-..|+| ..||.++++.+- . ..||||+-+ | .+. ....++.++.-.++|.
T Consensus 200 ~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re---G--~L~-------stSE~v~gLe~~l~Wr 265 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE---G--ELQ-------STSEPVDGLEGALSWR 265 (928)
T ss_pred ccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC---c--eEE-------eccccCCCccCCccCC
Confidence 113345566 899999999875 3 467888742 3 222 1122333333358999
Q ss_pred cCCCeEEEEE---CCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec
Q 000697 1145 QQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220 (1348)
Q Consensus 1145 ~~~~~Ll~gg---~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~ 1220 (1348)
|.|..|++.. +...|.+|..+.-+--...++. ..+..|..| .|+.++..|+....|. |.+|-..+-.-..+.--
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI 343 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE-EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE
Confidence 9998888874 3456777875543201122222 334458999 7788999999988665 99998876541111110
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC----CCC-------cceEEEec--------------------
Q 000697 1221 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR----NHK-------DAYLTIDA-------------------- 1269 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr----~~~-------~~v~t~~~-------------------- 1269 (1348)
.+ .....+..+.|+|. ....|...+.+|.+..++.. .+. ..+..+.+
T Consensus 344 ~~-~~~~~~~~~~Wdpe-~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 344 RF-SSSESVNFVKWDPE-KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred Ec-cCCCCCCceEECCC-CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 11 11234556999997 67778888877777665542 110 11222221
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE---------EEeccC---CcccccccCCeEEEEEeCCCCE
Q 000697 1270 ---HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG---------TIRYHH---PSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1270 ---h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~---------~i~~~h---~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
-...|.+++|++++..+|+-..||.|.+|....+... .+.. . ..........+..++|..+..+
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL-DSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc-ccccccccccccccEEEEEEeCCCEE
Confidence 1457899999999988999999999999984322111 1111 0 0000112356788888888877
Q ss_pred EEEEECC
Q 000697 1335 LAAGSAD 1341 (1348)
Q Consensus 1335 Latgs~D 1341 (1348)
++....+
T Consensus 501 ~~~~~~~ 507 (928)
T PF04762_consen 501 LVLSDSD 507 (928)
T ss_pred EEEEecC
Confidence 6666554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-05 Score=104.12 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=156.2
Q ss_pred EEEEEEeeC-CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec--ccCCCCc-----ccccceEEEEecCCCeEEEEE-
Q 000697 1084 SKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS--IQGHKPG-----VRCSNVVVDWQQQSGYLYASG- 1154 (1348)
Q Consensus 1084 tsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~--l~~h~~~-----V~si~~~v~ws~~~~~Ll~gg- 1154 (1348)
..+++ +. ++.++++-+.++.|++||... ..... +.. ..+.... ......-++++++++.|+++.
T Consensus 571 ~gvav--d~~~g~lyVaDs~n~rI~v~d~~G---~~i~~--ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 571 GKLAI--DLLNNRLFISDSNHNRIVVTDLDG---NFIVQ--IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred ceEEE--ECCCCeEEEEECCCCeEEEEeCCC---CEEEE--EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 35666 44 456777777888999999743 22111 010 0000000 000012378888888887775
Q ss_pred CCCeEEEEECCCCceeeeeecCCC----------------CCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000697 1155 EVSSIMLWDLEKEQQMVNPIPSSS----------------DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVC 1217 (1348)
Q Consensus 1155 ~Dg~IrVWDl~t~~~~v~~l~~~~----------------~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~ 1217 (1348)
..+.|+++|..++. +.++.+.. -..-..+ .+++ ++.++++.+.++.|++||..++.. .
T Consensus 644 ~n~~Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad~~~~~I~v~d~~~g~v--~ 718 (1057)
T PLN02919 644 ENHALREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAMAGQHQIWEYNISDGVT--R 718 (1057)
T ss_pred CCceEEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEECCCCeEEEEECCCCeE--E
Confidence 56789999988765 44442210 0012466 4455 677888888899999999987652 1
Q ss_pred eecCC------CC------CCCCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCCCCcceEE------------EecC--
Q 000697 1218 STRPH------TQ------QVERVVGISFQPGLDPA-KIVSASQAGDIQFLDIRNHKDAYLT------------IDAH-- 1270 (1348)
Q Consensus 1218 ~~~~~------~~------h~~~I~sl~~sp~~~g~-~LaSgs~DG~I~IWDlr~~~~~v~t------------~~~h-- 1270 (1348)
.+... .+ .-.....++++|+ +. .+++-+.++.|++||+.++...+.. +-.+
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 11110 01 1134567999998 66 5566667799999999865321110 0000
Q ss_pred ------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCC--ccc-----ccccCCeEEEEEeCCCCEEEE
Q 000697 1271 ------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP--SFM-----AQKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1271 ------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~--~f~-----~~~~~~Vtslafspdg~~Lat 1337 (1348)
-....+++++++|.++++-+.+++|++||.++..+..+.+ .. ++. ........+++++++|+++++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 1124688999999999999999999999987766666544 21 111 112346789999999998888
Q ss_pred EECCCeEEEcC
Q 000697 1338 GSADACVSIHS 1348 (1348)
Q Consensus 1338 gs~Dg~I~IWd 1348 (1348)
.+.+++|++||
T Consensus 876 Dt~Nn~Irvid 886 (1057)
T PLN02919 876 DTNNSLIRYLD 886 (1057)
T ss_pred ECCCCEEEEEE
Confidence 88899999986
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-05 Score=98.52 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCC--eEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~DG--~IrIW 1109 (1348)
..+....|+|||+.|+..+.+ ..|.+||+++++... +.... +.+....| ++||+.|+ +.+.+| .|.+|
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEE--CCCCCEEEEEEccCCCceEEEE
Confidence 457888999999988876533 368899998876543 22222 33456788 78998877 445555 47777
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ +..+. +..+...... ..|++++..++..++ + ..|+++|+.+++ .. .+...... ....
T Consensus 273 d~~~--~~~~~------lt~~~~~~~~----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~-~lt~~~~~-~~~~- 336 (430)
T PRK00178 273 DLAS--RQLSR------VTNHPAIDTE----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AE-RVTFVGNY-NARP- 336 (430)
T ss_pred ECCC--CCeEE------cccCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCC-ccce-
Confidence 7755 33322 2333333333 789999998877653 3 358888887776 32 22211111 2233
Q ss_pred EecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G--~I~IWDlr~~ 1260 (1348)
.++++|+.++....+ | .|.+||+.+++ . +.+ ... .......|+|+ |+.++..+.+ | .+.++++..
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~-~~l-t~~---~~~~~p~~spd--g~~i~~~~~~~g~~~l~~~~~~g- 407 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGS-V-RIL-TDT---SLDESPSVAPN--GTMLIYATRQQGRGVLMLVSING- 407 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCC-E-EEc-cCC---CCCCCceECCC--CCEEEEEEecCCceEEEEEECCC-
Confidence 568899988876653 3 58889998876 2 222 111 12225689999 7777766543 3 366666653
Q ss_pred CcceEEEecCCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spd 1282 (1348)
.....+..+.+.+...+|+|.
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CceEECcCCCCCcCCCccCCC
Confidence 344455555666777777763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-05 Score=100.60 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=155.8
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-----------CCCeEEEEEEeeCCCCEEEEEe-CC
Q 000697 1037 GTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFP-----------DKGISKLCLVNELDVSLLLVAS-CN 1103 (1348)
Q Consensus 1037 ~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~-----------~~~ItsL~f~ns~d~~~L~tgs-~D 1103 (1348)
-+..+++++.+ .++++-..++.|++||.. ++.+..+.+.... -.....+++ .++++.|+++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCC
Confidence 34678898764 455555678889999986 5555444331100 123578888 56777666654 45
Q ss_pred CeEEEEeccCCCCceeEEeeee----cccCCCC---cccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeec
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFS----SIQGHKP---GVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~----~l~~h~~---~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~ 1175 (1348)
+.|+++|..+ +....+.... ...+... ........++++++++.++++ +.++.|++||..++. . ..+.
T Consensus 646 ~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~ 721 (1057)
T PLN02919 646 HALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFS 721 (1057)
T ss_pred ceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEe
Confidence 7799998755 2222110000 0000000 000011237888877777666 577899999988765 2 2221
Q ss_pred CC---------C-----CCCeEEEEEecCCCC-EEEEEeCCCeEEEEECCCCCeeeEee---------cCCCC-------
Q 000697 1176 SS---------S-----DCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCST---------RPHTQ------- 1224 (1348)
Q Consensus 1176 ~~---------~-----~~~VtsL~~~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~---------~~~~~------- 1224 (1348)
+. . -.....| .++++++ ++++.+.++.|++||+.++......- .....
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 0 0123457 5567776 66677778999999998765221100 00000
Q ss_pred -CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--------------CCCeEEEEEeCCCCEEEEE
Q 000697 1225 -QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------------RGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1225 -h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--------------~~~VtsLa~spdg~~Lasg 1289 (1348)
.-....+++++++ |+.+++-+.++.|++||..++ . +.++.+. -.....++++++|+++++-
T Consensus 801 ~~l~~P~Gvavd~d--G~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKD--GQIYVADSYNHKIKKLDPATK-R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCC--CcEEEEECCCCEEEEEECCCC-e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0123468899998 889999999999999999865 2 3333221 1256789999999999999
Q ss_pred eCCCcEEEEEcCCc
Q 000697 1290 SAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~g~ 1303 (1348)
+.++.|++||+...
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999996543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=97.81 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCCe--EEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADE-NE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGN--IRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~-dg--~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~--IrIW 1109 (1348)
..+.+..|+|||+.|+..+. ++ .|.+||+.+++... +.... .......| ++||+.|+. .+.+|. |.+|
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~---g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP---GINGAPRF--SPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC---CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEE
Confidence 45678899999998887653 33 58888988776432 22212 23346778 789997764 566776 5555
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CC--eEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ ++.+. +..+...... ..|++++..|+..+. +| .|.++|+.+++ . ..+...... ....
T Consensus 292 dl~t--g~~~~------lt~~~~~~~~----p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~-~~Lt~~g~~-~~~~- 355 (448)
T PRK04792 292 DIAT--KALTR------ITRHRAIDTE----PSWHPDGKSLIFTSERGGKPQIYRVNLASGK-V-SRLTFEGEQ-NLGG- 355 (448)
T ss_pred ECCC--CCeEE------CccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEEecCCCC-CcCe-
Confidence 6644 33322 3333333333 789999998877653 33 57777887766 3 333211111 2334
Q ss_pred EecCCCCEEEEEeC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCc--EEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGD--IQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~-DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~--I~IWDlr~~ 1260 (1348)
.++++|+.++..+. ++ .|.++|+.+++ .. .+... .......|+|+ |+.|+..+ .+|. +.++|.. +
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~-~lt~~----~~d~~ps~spd--G~~I~~~~~~~g~~~l~~~~~~-G 426 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGA-MQ-VLTST----RLDESPSVAPN--GTMVIYSTTYQGKQVLAAVSID-G 426 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCC-eE-EccCC----CCCCCceECCC--CCEEEEEEecCCceEEEEEECC-C
Confidence 56889988877654 34 45667877765 22 22111 11224579999 77666554 4444 6666764 3
Q ss_pred CcceEEEecCCCCeEEEEEeC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
.....+..+.+.+...+|+|
T Consensus 427 -~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 427 -RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 45666666666778888887
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00024 Score=83.66 Aligned_cols=251 Identities=10% Similarity=0.137 Sum_probs=145.8
Q ss_pred CeEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEeeCCCCC----CCCeEEEEEEeeCCCCEEEEEe-
Q 000697 1037 GTKTALLQPFSPIVVAADE----------NERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS- 1101 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~----------dg~I~VWd~~t~~~l~~~~~h~~~----~~~ItsL~f~ns~d~~~L~tgs- 1101 (1348)
....+ ++||++.|+++.. ++.|.|||..+++.+..+.....+ +.....+++ ++||++|++..
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l--s~dgk~l~V~n~ 124 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL--TPDNKTLLFYQF 124 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE--CCCCCEEEEecC
Confidence 44455 9999998877654 789999999999999988754311 122335667 78999999876
Q ss_pred C-CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecC-CC
Q 000697 1102 C-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPS-SS 1178 (1348)
Q Consensus 1102 ~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~-~~ 1178 (1348)
. +..|.+.|+.. ++ .+.. +.- +. + ...+..+.+ .. ++-+.||........... ........ +.
T Consensus 125 ~p~~~V~VvD~~~--~k--vv~e---i~v--p~--~-~~vy~t~e~-~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 125 SPSPAVGVVDLEG--KA--FVRM---MDV--PD--C-YHIFPTAND-TF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEEECCC--Cc--EEEE---EeC--CC--C-cEEEEecCC-cc-EEEeecCceEEEEecCCCceEEeeeeeecC
Confidence 3 68999999976 22 2211 110 00 0 001222111 11 122233333332222111 01111110 00
Q ss_pred -CCCeEEE-EEecCCCCEEEEEeCCCeEEEEECCCCCe----eeEeecCCC----CCCCCeEEEEEecCCCCCEEEEEE-
Q 000697 1179 -DCSISAL-TASQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPHT----QQVERVVGISFQPGLDPAKIVSAS- 1247 (1348)
Q Consensus 1179 -~~~VtsL-~~~s~dg~~LvsGs~DG~VrvwDlr~~~~----~v~~~~~~~----~h~~~I~sl~~sp~~~g~~LaSgs- 1247 (1348)
..++..- .+...+|..+..... |.|.+.|+..... ....+.... -..+.+.-++++++ ++.+++..
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g~~lyV~~~ 267 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--RDRIYLLAD 267 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC--CCEEEEEec
Confidence 0000000 123347777777776 9999999654321 111111000 02234555999998 66666532
Q ss_pred ---------CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEE-cCCceEEEEe
Q 000697 1248 ---------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGS-AKQLIKVFS-LEGEQLGTIR 1309 (1348)
Q Consensus 1248 ---------~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS-~Dg~I~Vwd-~~g~~l~~i~ 1309 (1348)
..+.|.++|..+. +.+..+.. ...+..++++||++ .|++.+ .++.|.|+| .+++.+.++.
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 1247999999987 67777764 44789999999999 777665 578899999 5677887773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-05 Score=93.97 Aligned_cols=190 Identities=15% Similarity=0.066 Sum_probs=114.5
Q ss_pred EEEecCCCeE---EEEECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC----eEEEEECC
Q 000697 1141 VDWQQQSGYL---YASGEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG----SVRLYDVR 1210 (1348)
Q Consensus 1141 v~ws~~~~~L---l~gg~D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG----~VrvwDlr 1210 (1348)
-.|+|++..+ +++..+ ..|.+.|+.+++ .. .+....+. .... .++|+|+.|+..+. +| .+..||+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~-~lt~~~g~-~~~p-~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GK-KILALQGN-QLMP-TFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCC-ce-EeecCCCC-ccce-EECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 7899998753 244333 458888988776 22 22221121 3344 67899988876553 23 34557766
Q ss_pred CC--CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEc--CCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1211 TP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDI--RNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1211 ~~--~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDl--r~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
.+ ....+... ++.......+|+|+ |+.|+..+ .+|...+|.+ ...+.....+..+...+....|+|+|+.
T Consensus 266 ~g~~g~~~~lt~---~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLN---EAFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeec---CCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 43 11222221 11234467899999 88777655 5676566644 3221234445545556788999999998
Q ss_pred EEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-C--CeEEEc
Q 000697 1286 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-D--ACVSIH 1347 (1348)
Q Consensus 1286 LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-D--g~I~IW 1347 (1348)
|+..+.+ ..|.+||..+.....+.. .. ..+....|+|+|++|+..+. + +.|.+|
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 8876543 468999987666655543 21 34567899999988875443 2 345544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-05 Score=89.15 Aligned_cols=224 Identities=16% Similarity=0.159 Sum_probs=143.6
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEe-e--eecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVT-A--FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs-~--~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~ 1168 (1348)
.||+.++- +..|.|.+||..+. +.+.+. . ...-......+.-..+.-.|+...+.+++--.-|...|.+...+-
T Consensus 276 sDGkrIvF-q~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 46665553 45677999998762 222110 0 000000111111111112244444444444345667776655444
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. ++..+...|.-. -...+++-++.|..|| .+-|||.++++ ..+....+ +.|.++..+++ |++++.+.
T Consensus 353 -~---iqv~~~~~VrY~-r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l----g~I~av~vs~d--GK~~vvaN 420 (668)
T COG4946 353 -S---IQVGKKGGVRYR-RIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL----GNIEAVKVSPD--GKKVVVAN 420 (668)
T ss_pred -e---EEcCCCCceEEE-EEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc----cceEEEEEcCC--CcEEEEEc
Confidence 2 222233337666 4566777899999999 89999999987 33333233 78999999999 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCceEEEEeccCCcccccccCCe
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK----QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D----g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
....+.+.|+.++ .....-+...+-|+.++|||+++++|-+--+ +.|++||+.|..+..+.. .. +.=
T Consensus 421 dr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t-------a~D 491 (668)
T COG4946 421 DRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT-------AYD 491 (668)
T ss_pred CceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc-------ccc
Confidence 9999999999988 4444444556789999999999999987544 579999998877776655 32 233
Q ss_pred EEEEEeCCCCEEEEEE
Q 000697 1324 NCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1324 tslafspdg~~Latgs 1339 (1348)
.+-+|.|++++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 4567888988776443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-05 Score=84.92 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=146.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCcE-EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~-l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
...+||.|+..|...+|...+.+. +.....+. ..|+-+.=. -....-+..++.|.++++.++.....+..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~----- 153 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFA----- 153 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccc---cchhhhhhh-cccccceeeccCCcceeEEEEecCcccce-----
Confidence 345899999999999999886543 33333333 223221110 11233566788999999999865222211
Q ss_pred ecccCCCCc--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCCCCCCeEEEEEecCCCCEEEEEeCC
Q 000697 1125 SSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201 (1348)
Q Consensus 1125 ~~l~~h~~~--V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D 1201 (1348)
-|... +.+ +.+++++..+++.|+...|..|.+..+.. .+..........--+. .++.....|++++.|
T Consensus 154 ----~h~~~~~~ns----~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~-S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 154 ----VHNQNLTQNS----LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN-SFSENDLQFAVVFQD 224 (344)
T ss_pred ----eeccccceee----eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee-eeccCcceEEEEecC
Confidence 12222 334 78899999999999999999998876542 2332222211112344 456778899999999
Q ss_pred CeEEEEECCCCCeee-EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-------CC-C
Q 000697 1202 GSVRLYDVRTPDMLV-CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-------HR-G 1272 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v-~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-------h~-~ 1272 (1348)
|++.|||+|....+. ..-.....|.+.+..+.|++.+.-..|...-.-+.+.+.|+|+.. -.+.+.. |. .
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-NHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-eeeEEecCcccccccccc
Confidence 999999999654322 222233458899999999987223455555566889999999874 3333322 22 2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|..-.|+.++.-+.+.+.+ .+.=|++.
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ccccccccCCCcccccccch-hhheeecc
Confidence 36666777666655554443 23445443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-06 Score=91.63 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=158.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC-ceeEEeeeecccCCCCcc--------cccceEEEEecCC--Ce
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD-KQKLVTAFSSIQGHKPGV--------RCSNVVVDWQQQS--GY 1149 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~-~~~lvs~~~~l~~h~~~V--------~si~~~v~ws~~~--~~ 1149 (1348)
..|+++.| ...|.+|+||...|.|.+|.-....+ +.+.. ..+++|.... ..-...+.|-.++ ..
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~---teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFF---TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhh---hhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 57999999 77899999999999999997654221 11222 2234443321 1111126676554 36
Q ss_pred EEEEECCCeEEEEECCCCc------------------ee------------------ee-----eecCCCCCCeEEEEEe
Q 000697 1150 LYASGEVSSIMLWDLEKEQ------------------QM------------------VN-----PIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~------------------~~------------------v~-----~l~~~~~~~VtsL~~~ 1188 (1348)
++.++.|++|++|.+.... .+ +. .....+..-|.++ .+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi-S~ 180 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI-SF 180 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee-ee
Confidence 8888999999999876431 00 00 0001112235666 45
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC-----CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ-----VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h-----~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
..+...+++ ..|=.|.+|.+........... .+.| ..-|++..|+|. ....+.-.+..|.|++-|+|...-+
T Consensus 181 NsD~et~lS-aDdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 181 NSDKETLLS-ADDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred cCchheeee-ccceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhhhc
Confidence 555555554 4677899998886554333331 1122 235889999998 6777888888999999999943211
Q ss_pred ---eEEE------------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCceEEEEeccCCcccc--------c
Q 000697 1264 ---YLTI------------DAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMA--------Q 1318 (1348)
Q Consensus 1264 ---v~t~------------~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~l~~i~~~h~~f~~--------~ 1318 (1348)
.+.+ .+-...|+.+.|+++|+++++-+. -+|+||| ....++.++.- |...+. .
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech-HHHHHHHHHhhhhcc
Confidence 1111 111346889999999999998765 5899999 45677888765 543211 1
Q ss_pred ccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..-.-..+.|+.+...+.+|+..+..-||
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeee
Confidence 12223457788888888888766554443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-07 Score=102.87 Aligned_cols=281 Identities=15% Similarity=0.292 Sum_probs=178.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
.|...|..++--.+++-+++++.|.+|++|.++. ..+..+++.|. .+|.++.|. .+-.++ ++.||.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---k~i~~igfL--~~lr~i--~ScD~g 805 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---KPIHDIGFL--ADLRSI--ASCDGG 805 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---Ccccceeee--ecccee--eeccCc
Confidence 4556777777666778899999999999998863 23667788899 899999995 344454 456889
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEE-ECCCeEEEEECCCCceeeeeecCC----CC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSS----SD 1179 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~----~~ 1179 (1348)
|.+||... +..-..-.+..-.+..+.|. +... +...+++| +...+|+++|.+... .+..++.. .+
T Consensus 806 iHlWDPFi--gr~Laq~~dapk~~a~~~ik------cl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 806 IHLWDPFI--GRLLAQMEDAPKEGAGGNIK------CLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPN 876 (1034)
T ss_pred ceeecccc--cchhHhhhcCcccCCCceeE------ecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCc
Confidence 99999855 22110000000011111222 2222 34445555 467899999999877 66665532 22
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE-EEcC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF-LDIR 1258 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I-WDlr 1258 (1348)
..+.++ ...+.|+.+++|-.+|.|.+.|.|+++ .+..|+... .....++- |. ...++....|.++.+ |-.-
T Consensus 877 a~~R~i-aVa~~GN~lAa~LSnGci~~LDaR~G~-vINswrpme---cdllqlaa-ps--dq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 877 ALTRAI-AVADKGNKLAAALSNGCIAILDARNGK-VINSWRPME---CDLLQLAA-PS--DQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred hheeEE-EeccCcchhhHHhcCCcEEEEecCCCc-eeccCCccc---chhhhhcC-ch--hHHHHhhcccceeEeeehhc
Confidence 347788 667889999999999999999999998 666665543 33333332 44 567777777888888 8665
Q ss_pred CCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-----ceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-----~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
.+ ....+.+....+.. -...-|+-+++......+.||.-.+ ..+..++. +.| .+..++++--|-+.
T Consensus 949 dg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f----~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 949 DG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEF----PGTLTALAPLPLNC 1019 (1034)
T ss_pred CC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc--ccc----CCccceeeeccccc
Confidence 54 23333332222111 0112366677777667788886332 22233332 222 35678888888888
Q ss_pred EEEEEECCCeEEE
Q 000697 1334 LLAAGSADACVSI 1346 (1348)
Q Consensus 1334 ~Latgs~Dg~I~I 1346 (1348)
-+..|+..|.|.+
T Consensus 1020 afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCCCCceee
Confidence 8888888888875
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=105.01 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=172.6
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------ 1103 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------ 1103 (1348)
|.....++|.++.|.....++..|+..|.+.-+-....+....|+.|.. ..|..+.- -...+.+.+..
T Consensus 49 ~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~--~~v~~~~~----~~~~i~~ls~~alr~~~ 122 (1118)
T KOG1275|consen 49 SVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSI--DGVRRIEP----TESGIFTLSKTALRATT 122 (1118)
T ss_pred eeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEecc--chhhhhhh----hhhhheeeeHHHhhhhh
Confidence 4445556888999988888888888887776554444444455554441 11222211 11111121111
Q ss_pred -CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000697 1104 -GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1104 -G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~V 1182 (1348)
+-+-++|... .....-... +. -+...++.||--..+..+|+++.+ ..+........ |
T Consensus 123 r~gl~~~~~~~--------------~s~~~M~~~----~~--~~~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~-v 180 (1118)
T KOG1275|consen 123 RQGLPVFDFTC--------------PSMTKMASS----LH--MGPSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASG-V 180 (1118)
T ss_pred ccCceeecccC--------------CCHHHHHHH----hc--cCCcceeecchhhheeeeecccce-eeeeeeccCCc-e
Confidence 0011222110 000000011 11 145677778877778899999987 55555444333 5
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---------CCcEE
Q 000697 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---------AGDIQ 1253 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~---------DG~I~ 1253 (1348)
+-| ..+++.+.+|...|+|.+-|.++.+ .++.+. .|.+.|..+.++ |+.|++++. |..|+
T Consensus 181 ~im---R~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~---aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 181 TIM---RYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFD---AHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred EEE---EecCcEEEeecccceEEeecCCcCc-eeeeee---ccccceeeeecc----CCeEEEeecccccccccccchhh
Confidence 555 3468899999999999999999887 555554 566899888875 788988875 45589
Q ss_pred EEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE---cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd---~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
|||+|+. ..+.-+.-+.++ .-+.|+|. ...+++.+..|...+-| +..-....... +. ..+.+..++++
T Consensus 250 VYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p-----~~s~i~~fDiS 321 (1118)
T KOG1275|consen 250 VYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NP-----NGSGISAFDIS 321 (1118)
T ss_pred hhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE-cc-----CCCcceeEEec
Confidence 9999987 455555544443 55778886 44788888889999988 33222333332 22 23559999999
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 000697 1330 PYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IWd 1348 (1348)
+++..||.|..+|.|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999994
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.9e-05 Score=87.47 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=169.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-----------CCeE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-----------NGNI 1106 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-----------DG~I 1106 (1348)
-+-+.|||-|.+|++--. ..|.+|--++-..++.|. |. .|.-+.| +|..++|+|-+. ...+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp----~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HP----GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CC----Cceeeec--CCccceEEEecCCccccCcccCCCceE
Confidence 356889999999999874 458899766555555554 33 5888899 889999999653 2579
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
+|||+.+ |. +..++..+. ....+.. .+.|+.++.+++.-+. ..|.||+..+-. ++ ..+.-.-..|...
T Consensus 285 ~IWDI~t--G~--lkrsF~~~~-~~~~~WP---~frWS~DdKy~Arm~~-~sisIyEtpsf~-ll-d~Kslki~gIr~F- 352 (698)
T KOG2314|consen 285 IIWDIAT--GL--LKRSFPVIK-SPYLKWP---IFRWSHDDKYFARMTG-NSISIYETPSFM-LL-DKKSLKISGIRDF- 352 (698)
T ss_pred EEEEccc--cc--hhcceeccC-CCccccc---eEEeccCCceeEEecc-ceEEEEecCcee-ee-cccccCCccccCc-
Confidence 9999977 32 222222221 2223333 3899999988887766 458999877643 22 2222222236776
Q ss_pred EecCCCCEEEEEeCC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----------CCCc
Q 000697 1187 ASQVHGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS----------QAGD 1251 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D-----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs----------~DG~ 1251 (1348)
.++|.+++|+-=... ..+.+-.+-+.. .+++...+ .-.=..+.|+.. |.+|+.-- .-..
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlf---nVsDckLhWQk~--gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLF---NVSDCKLHWQKS--GDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccce---eeeccEEEeccC--CcEEEEEEEeeccccccceEee
Confidence 566777776643221 234555554444 22222111 122235667766 77776432 1224
Q ss_pred EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcC--CceEEEEeccCCcccccccCCeEEE
Q 000697 1252 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
+.|+.++...-++..+. -...|-..+|-|+|.-+++-+. ..++.+|.++ +....-++. .+ ....+.+
T Consensus 427 ~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~-~d------k~~~N~v 498 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE-LD------KKFANTV 498 (698)
T ss_pred EEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh-hc------ccccceE
Confidence 67788887655665554 4567899999999997766443 3568888754 222111111 11 1456889
Q ss_pred EEeCCCCEEEEEEC---CCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSA---DACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~---Dg~I~IWd 1348 (1348)
.|+|.|++++.++- .|.+.+||
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEe
Confidence 99999999887654 56666664
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-05 Score=105.91 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=182.9
Q ss_pred CchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhh
Q 000697 461 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1348)
Q Consensus 461 ~~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~ 538 (1348)
+-+|.+.++|.++ ..+..|+..|+..-.-..-.+...++-|.+|++++||.++..+.|.-++.++.-+....+.+|.-
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4688899988763 34555665555544434444444557799999999999988889988999999999876677765
Q ss_pred hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcch----------------hHHH-------------------
Q 000697 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG----------------QEAC------------------- 583 (1348)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~g----------------q~~~------------------- 583 (1348)
..+.|.++.++++|.+.+ ++.|..++..|+.+..+-... +..+
T Consensus 526 V~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 557799999999998764 477777777776665322111 1111
Q ss_pred --HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 584 --IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 584 --~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
...+.+..+.++|+ .+++..+.-++-+|+.++.+..+.....+..++...++.+|.++..+||++++.||+
T Consensus 604 g~~~~ggL~~Lv~LL~-------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 604 GSAANDALRTLIQLLS-------SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhhccccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 12457778888888 778999999999999999988887666788888889999999999999999999999
Q ss_pred hhcccCcCCCCCCCCCCCCCchHH-HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhcc
Q 000697 662 TLLDIGFDSCRDGVEGDEECDDDE-KIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 724 (1348)
Q Consensus 662 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~ 724 (1348)
.+.... .+.+ ..-.+...+..|+.++.+.+..|+.+++.+|..++..-+
T Consensus 677 nL~~~~--------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 677 ALSRSI--------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHhCC--------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 998321 1122 222567778889999999999999999999998886543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=92.35 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=59.1
Q ss_pred hhhhHHh-ccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhH
Q 000697 503 FPYVLKL-LQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1348)
Q Consensus 503 fpyvlkl-L~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~ 581 (1348)
+|.+..+ ++++..+.|..++..+..+..-...-+.. ....+...+.+++ ++-|..++..|+.+-
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~-----a~~~l~~~~~D~~--~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK-----IVEQSQITAFDKS--TNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH-----HHHHHHHHhhCCC--HHHHHHHHHHHhccC--------
Confidence 4444444 44455555655555555543322111111 1112223333332 355555555554331
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
...++..++..|+ |+++.||.|++.+||++-.+.++ +...|..+|.|..++||.+++.+||
T Consensus 157 ---~~~ai~~L~~~L~-------d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ---DEAAIPLLINLLK-------DPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ---CHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2234555555555 55566666666666655211222 2224555556666666666666665
Q ss_pred hh
Q 000697 662 TL 663 (1348)
Q Consensus 662 ~~ 663 (1348)
.+
T Consensus 218 ~~ 219 (280)
T PRK09687 218 LR 219 (280)
T ss_pred cc
Confidence 53
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-05 Score=95.28 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=192.0
Q ss_pred CCCchhhHHHHhhchhhHH--HHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCch-hhhhHHHHHHHHHhccC-hh
Q 000697 459 PPEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTP-ELRQILVFIWTKILALD-KS 534 (1348)
Q Consensus 459 ~p~~lP~vLq~LlS~~~rl--ral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~-elr~~~~FIwa~il~~~-~~ 534 (1348)
..+-.|+..++|.|+.-.+ .|+--|+++.--||-.++..|+.|+++-.+.+|+.+.. -+..-++..++.+|+.- |+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 3488999999999986554 78889999999999999999999999999999997754 22233677788888874 65
Q ss_pred hhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHH
Q 000697 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 614 (1348)
Q Consensus 535 ~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~ 614 (1348)
-..+-++ .........|...|. +-.+.+|-.|+.+-++-.+.=..-+..++...+..+|. .+.+-++.-+
T Consensus 230 P~~~~v~-~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-------~~~~~v~~Pa 299 (514)
T KOG0166|consen 230 PPFDVVA-PILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-------HSSPKVVTPA 299 (514)
T ss_pred CcHHHHH-HHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-------CCCcccccHH
Confidence 5555554 355666677776664 78899999999999888887777799999999999999 6678888899
Q ss_pred HHHHHHhhccchHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHH
Q 000697 615 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1348)
Q Consensus 615 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1348)
+-++|....+.++-.+..++.++...|..++. .+..-.|+|++..++.+.. +..+.-+.-++..+
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--------------G~~~qiqaVida~l 365 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--------------GNQEQIQAVIDANL 365 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--------------CCHHHHHHHHHccc
Confidence 99999999998888888899999999999997 6666699999999999972 11122233356677
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHH
Q 000697 694 IRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~ls~~~~ 721 (1348)
.-.|+.+...+---.|+|++++++....
T Consensus 366 ~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 366 IPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 7778888777778899999999986543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=92.67 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=120.7
Q ss_pred cCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhh-ccCCCCchHHHHHHHHHHHHHhcCCcc
Q 000697 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF-LDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1348)
Q Consensus 500 ~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~-L~~~~~~~~~r~~~afiLa~l~~~~~~ 578 (1348)
.-+|+.+.+++++..++.|..++.++..|=.-+ ..|. ..+...... +.+++ ++.|+.++-.|+.++.....
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-----~a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-----NVFNILNNLALEDKS--ACVRASAINATGHRCKKNPL 124 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHhcccccccc
Confidence 346889999999998999999999998764322 1121 122333333 34444 69999999999999754432
Q ss_pred hhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHH
Q 000697 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVF 658 (1348)
Q Consensus 579 gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~ 658 (1348)
. ...+.+.+...+. |++++||..++.+||++-.. .+...|+.+|+|+++.||.++++
T Consensus 125 ~-----~~~a~~~l~~~~~-------D~~~~VR~~a~~aLg~~~~~-----------~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 125 Y-----SPKIVEQSQITAF-------DKSTNVRFAVAFALSVINDE-----------AAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred c-----chHHHHHHHHHhh-------CCCHHHHHHHHHHHhccCCH-----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 1 3345666777777 78999999999999977531 24457999999999999999999
Q ss_pred HHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 659 SLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 659 aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
+||.+- .. ...+...|+..+.|..+.||.+++.+|+.+
T Consensus 182 aLg~~~-~~----------------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNK-YD----------------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCC-CC----------------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 999982 10 012234566777999999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.2e-05 Score=104.14 Aligned_cols=240 Identities=22% Similarity=0.201 Sum_probs=181.3
Q ss_pred CCchhhHHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccCh----
Q 000697 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK---- 533 (1348)
Q Consensus 460 p~~lP~vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~---- 533 (1348)
.|-+|.+.++|.++. .+..|+-.|++.---.+-.+.....-|++|.++++|.+...+.|..++..+..++....
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I 566 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI 566 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH
Confidence 378999999998754 44566666666554333344444467999999999998877888777777777753211
Q ss_pred ------------hhhhh---------------------hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 534 ------------SCQVD---------------------LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 534 ------------~~q~~---------------------l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
..+.. ....++......+|...+ ++.|..+|.+|+.++.+.+.-.
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHH
Confidence 11110 112457777778887554 5899999999999998877765
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh-hhccCchhhhhhhccCCCHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~-~~~~~~~~~l~~ll~D~sP~VRaa~v~a 659 (1348)
..-+..+++.-++.+|. ....++|..++.+|+.+..+..+.+.. .++.++...|+.+|++.+.+|+..++.+
T Consensus 645 ~avv~agaIpPLV~LLs-------s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLT-------NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHh-------cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 66678899999999999 778899999999999999876666544 4888898899999999999999999999
Q ss_pred HHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 660 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
|+.+...+ +....+. +......|..++.++++.+|+.++.+|..+...+
T Consensus 718 LanLl~~~--------------e~~~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 718 LANLLSDP--------------EVAAEAL-AEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHcCc--------------hHHHHHH-hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 99999432 1111122 3345677888899999999999999998877654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00075 Score=76.33 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=140.5
Q ss_pred EEEEEeeC-CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000697 1085 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163 (1348)
Q Consensus 1085 sL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD 1163 (1348)
++.| .+ ++.++++--..+.|..|+... +..... ...+ ..+ +.+...++.++++...+ +.++|
T Consensus 4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~----~~~~----~~G----~~~~~~~g~l~v~~~~~-~~~~d 66 (246)
T PF08450_consen 4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDT--GEVEVI----DLPG----PNG----MAFDRPDGRLYVADSGG-IAVVD 66 (246)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTT--TEEEEE----ESSS----EEE----EEEECTTSEEEEEETTC-EEEEE
T ss_pred ceEE--ECCCCEEEEEEcCCCEEEEEECCC--CeEEEE----ecCC----Cce----EEEEccCCEEEEEEcCc-eEEEe
Confidence 5677 45 666777766789999999865 333222 1111 233 56664557888877655 45559
Q ss_pred CCCCceee--eeec-CC-CCCCeEEEEEecCCCCEEEEEeCC--------CeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1164 LEKEQQMV--NPIP-SS-SDCSISALTASQVHGGQLAAGFVD--------GSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1164 l~t~~~~v--~~l~-~~-~~~~VtsL~~~s~dg~~LvsGs~D--------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
..+++ .. .... .. .....+.+ ...++|++.++.... |.|..++.. ++ ........ ...+.
T Consensus 67 ~~~g~-~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~----~~pNG 138 (246)
T PF08450_consen 67 PDTGK-VTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGL----GFPNG 138 (246)
T ss_dssp TTTTE-EEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEE----SSEEE
T ss_pred cCCCc-EEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCc----ccccc
Confidence 88875 32 2221 11 33347788 667889977776644 567777777 33 33223222 56789
Q ss_pred EEEecCCCCCEEE-EEECCCcEEEEEcCCCCcce---EEE---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce
Q 000697 1232 ISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAY---LTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1232 l~~sp~~~g~~La-Sgs~DG~I~IWDlr~~~~~v---~t~---~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
++|+|+ ++.|+ +-+..+.|..||+......+ ..+ ....+..-.+++..+|.+.++....+.|.+++.+|+.
T Consensus 139 i~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 999999 77654 66677889999987432211 222 2222347889999999998888888999999999999
Q ss_pred EEEEeccCCcccccccCCeEEEEEe-CCCCEEEEE
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAG 1338 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafs-pdg~~Latg 1338 (1348)
+..+.. .. ..+++++|. ++...|...
T Consensus 217 ~~~i~~-p~-------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIEL-PV-------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE--SS-------SSEEEEEEESTTSSEEEEE
T ss_pred EEEEcC-CC-------CCEEEEEEECCCCCEEEEE
Confidence 998887 32 578999994 565555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=91.58 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe-----CCCeEEEEECCCCCeeeEeec
Q 000697 1146 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTR 1220 (1348)
Q Consensus 1146 ~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-----~DG~VrvwDlr~~~~~v~~~~ 1220 (1348)
.+..+++++.||.+.+++.+.-.+....+...+.. --+.+.. ..++.+.++. .-+..+.|+++..+......+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-cccccee-ecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 46778889999999999987633122222222111 1111111 1234443332 123456677665442222221
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1221 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.. ..|++++-+|. ....+++|+.||.+-+||.|+...++..+..|+.+|+.+.|||. +..|.++++||.+.-||
T Consensus 178 ~~----~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 AL----DAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cc----ccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 22 34999999998 67888999999999999999887788888999999999999995 55899999999999999
Q ss_pred cCCceEE
Q 000697 1300 LEGEQLG 1306 (1348)
Q Consensus 1300 ~~g~~l~ 1306 (1348)
.+++.+.
T Consensus 253 as~~~l~ 259 (319)
T KOG4714|consen 253 ASTTFLS 259 (319)
T ss_pred CCCceEE
Confidence 8877766
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-05 Score=91.87 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=167.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC----------CCEEEEEeCCCeEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD----------VSLLLVASCNGNIR 1107 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d----------~~~L~tgs~DG~Ir 1107 (1348)
-.++.|+|.| ++|-|+ ...|.|-|..+-+.+.+++-|. ..|+.+.|.+.+. .-+|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4467788765 677776 6688999999999999999999 8999999964321 22567777789999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEe---cCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws---~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
+||... +... ..+..|..++.. ++|- ++. ..+++-....+|.+|+..+++ .+-.....+.- ..
T Consensus 93 l~d~~~--~s~~-----~~l~~~~~~~qd----l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~i-Ls 159 (1062)
T KOG1912|consen 93 LVDFVL--ASVI-----NWLSHSNDSVQD----LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEI-LS 159 (1062)
T ss_pred EEEehh--hhhh-----hhhcCCCcchhh----eeeeeccCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcc-ee
Confidence 999865 2222 225667777766 6663 334 345555778899999999998 66666554443 56
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCC---eeeEeecCCCCCCC----------------C---------eEEEEEe
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPD---MLVCSTRPHTQQVE----------------R---------VVGISFQ 1235 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~---~~v~~~~~~~~h~~----------------~---------I~sl~~s 1235 (1348)
|+.+.+-+.+.|..-+..|.|.+.+.-... ...+.++....|.+ . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 676666677778777778888777654211 11111111111111 0 1145678
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~--~LasgS~Dg~I~Vwd 1299 (1348)
|. -+.++-......+.++|++-. .++.......+.+.-+.+-|+++ .|.++-.||.+.+|-
T Consensus 240 p~--~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 240 PH--WRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hh--hhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 87 555555666788999999987 78888887778777888888755 899999999999996
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00055 Score=83.15 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=153.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
++..+++++.+|.+..+|.++|+.+.+.+... ....+... .+..+++++.+|.|..+|..+ ++..-.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESD--GAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccC--CCEeeeecCC
Confidence 35677788889999999999999988776544 11122222 245677788899999999876 4433221000
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CCe---EEEEEecC--CCCEEEE
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CSI---SALTASQV--HGGQLAA 1197 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~---~~V---tsL~~~s~--dg~~Lvs 1197 (1348)
.........+.. + . .++.+++++.+|.+..+|..+++ .+-....... ..+ ..+ ...| .++.+++
T Consensus 190 -~~~~~~~~~~sP--~-v--~~~~v~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~-~~sP~v~~~~vy~ 261 (394)
T PRK11138 190 -VPSLTLRGESAP--A-T--AFGGAIVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDV-DTTPVVVGGVVYA 261 (394)
T ss_pred -CCcccccCCCCC--E-E--ECCEEEEEcCCCEEEEEEccCCh-hhheeccccCCCccchhccccc-CCCcEEECCEEEE
Confidence 000000000100 1 1 24568888889999999999887 5443321110 000 000 0011 2456777
Q ss_pred EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCCeEE
Q 000697 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSA 1276 (1348)
Q Consensus 1198 Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~Vts 1276 (1348)
++.+|.+..+|..+++..-+ . .. .....+.. . +..++.++.+|.+..+|..++ +.+-....- .....+
T Consensus 262 ~~~~g~l~ald~~tG~~~W~-~-~~----~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWK-R-EY----GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTA 330 (394)
T ss_pred EEcCCeEEEEECCCCCEEEe-e-cC----CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccC
Confidence 88899999999999873322 1 11 11122222 2 567888889999999999887 333322211 111222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1277 LAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1277 La~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..+ .+..++.++.||.|.+.| .+|+.+...+. ... .......+ .+..|+.++.||.|..+
T Consensus 331 p~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~------~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 331 PVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSS------GFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCC------cceeCCEE--ECCEEEEEeCCceEEEE
Confidence 223 245777889999999999 57888777654 220 11112222 24468888899998765
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=78.90 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q 000697 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1348)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~L 618 (1348)
.++.++++.++.+|.+.+ +..|.-++.+|+.++.+.+.......+.++++.++.+|+ ++++.+|..++.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-------SEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 567889999999998766 589999999999999998888888889999999999999 78999999999999
Q ss_pred HHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+.|..+.+......++.++...+..++++++..||..++.+|+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888888888889999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.5e-06 Score=92.03 Aligned_cols=166 Identities=17% Similarity=0.259 Sum_probs=119.9
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC----eeeEeecCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQ 1224 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----~~v~~~~~~~~ 1224 (1348)
+-++.|.+-.|-+-|++++. .+.+.. .+.|.++ -+...++++..|+.+|.|..+|+|.+. .....+ -
T Consensus 226 yhfs~G~sqqv~L~nvetg~--~qsf~s--ksDVfAl-Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----y 296 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH--QQSFQS--KSDVFAL-QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----Y 296 (425)
T ss_pred eeecccccceeEEEEeeccc--cccccc--chhHHHH-HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----E
Confidence 33666777789999999886 445553 3347887 455568899999999999999999762 122222 3
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc---eEEEecCCCCeEEE--EEeCCCCEEEEEeCCCcEEEEE
Q 000697 1225 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1225 h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~---v~t~~~h~~~VtsL--a~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
|.+.|+++..-.. .+.+|++.+.+|+|++||.|.. ++ +.++.+|-..-.-+ .+++....+++++.|...+||.
T Consensus 297 h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhcc-ccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 6688999887663 3889999999999999999976 45 88888886544333 4556667888899999999999
Q ss_pred c-CCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1300 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1300 ~-~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
+ +|..+.++.. .. ......+.+++|.
T Consensus 375 l~~ghLl~tipf-~~---s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDSGHLLCTIPF-PY---SASEVDIPSVAFD 401 (425)
T ss_pred cccCceeeccCC-CC---ccccccccceehh
Confidence 5 4777777765 21 1112346666664
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00071 Score=78.65 Aligned_cols=171 Identities=14% Similarity=0.173 Sum_probs=121.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-eEEEEeccCCCCceeEEeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
+|++++..+ .|...|.+...+-.++. ++. .+|.-..+ ..+++-++.|..|| .+-|+|... ++.+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~---~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~--~e~kr---- 396 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKK---GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDG--GEVKR---- 396 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCC---CceEEEEE--ccCCcceEEeccCCceEEEEecCC--ceEEE----
Confidence 677888887 67777776554444332 233 56777777 56777899999999 899999866 43332
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC--
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1202 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-- 1202 (1348)
+....+.|.. +..+++|+.++++.+...|.+.|+.++. ++.+......-|+.+ .+++++++++-+.-+|
T Consensus 397 --~e~~lg~I~a----v~vs~dGK~~vvaNdr~el~vididngn--v~~idkS~~~lItdf-~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 397 --IEKDLGNIEA----VKVSPDGKKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDF-DWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred --eeCCccceEE----EEEcCCCcEEEEEcCceEEEEEEecCCC--eeEecccccceeEEE-EEcCCceeEEEecCccee
Confidence 3344455555 8888999999999988999999999998 555555455569999 6789999999888776
Q ss_pred --eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1203 --SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1203 --~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
.|++||+..++ ..... +.. +.=.+-+|.|+ +++|.--
T Consensus 468 tq~Iklydm~~~K-iy~vT-T~t---a~DfsPaFD~d--~ryLYfL 506 (668)
T COG4946 468 TQSIKLYDMDGGK-IYDVT-TPT---AYDFSPAFDPD--GRYLYFL 506 (668)
T ss_pred eeeEEEEecCCCe-EEEec-CCc---ccccCcccCCC--CcEEEEE
Confidence 58999999887 44332 222 23345567777 6665543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00031 Score=85.66 Aligned_cols=311 Identities=11% Similarity=0.142 Sum_probs=194.1
Q ss_pred ccccccCCCCCeEEEEEcCC---C-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC
Q 000697 1027 IACWDTRFEKGTKTALLQPF---S-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspd---g-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~ 1102 (1348)
...|-..+..++..++|-+. . ..|++-....+|.+||..+|+++....... ....|+.+.+ -|...+..-+.
T Consensus 101 ~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~---~iLs~f~~DP-fd~rh~~~l~s 176 (1062)
T KOG1912|consen 101 VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH---EILSCFRVDP-FDSRHFCVLGS 176 (1062)
T ss_pred hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC---cceeeeeeCC-CCcceEEEEcc
Confidence 34466667788888988653 3 366666678899999999999988776555 4566788732 36666777777
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCC------------ccc----c---c--ceEEEEecCCCeEEEEECCCeEEE
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKP------------GVR----C---S--NVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~------------~V~----s---i--~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|.+-+-+.-...........++.-.+|.. .++ + + ..-++|+|.-..++-....+.+.|
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv 256 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV 256 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence 777777765321111000001111122211 000 0 0 112566777777777777788999
Q ss_pred EECCCCceeeeeecCCCCC-CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC------------------eeeEeecC-
Q 000697 1162 WDLEKEQQMVNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPD------------------MLVCSTRP- 1221 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~-~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~------------------~~v~~~~~- 1221 (1348)
+|++-+. ++..+....++ ++..+ .-.+..+.+.++..||.+.+|-.+... ..++.++.
T Consensus 257 ~dle~~~-~l~vvpier~~akfv~v-lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~ 334 (1062)
T KOG1912|consen 257 FDLEYEC-CLAVVPIERGGAKFVDV-LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF 334 (1062)
T ss_pred Ecchhhc-eeEEEEeccCCcceeEe-ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence 9999888 88777654443 23333 233445678888899998888765411 01111100
Q ss_pred --------------------------------------------------------------------CCCCCCCeEEEE
Q 000697 1222 --------------------------------------------------------------------HTQQVERVVGIS 1233 (1348)
Q Consensus 1222 --------------------------------------------------------------------~~~h~~~I~sl~ 1233 (1348)
..+|....++..
T Consensus 335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeee
Confidence 012333344443
Q ss_pred EecC---------CCC-------CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEe-------
Q 000697 1234 FQPG---------LDP-------AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS------- 1290 (1348)
Q Consensus 1234 ~sp~---------~~g-------~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS------- 1290 (1348)
.+|- -++ ..++.|+..|+|.++|+.++ .....+..|.+.|.++.|-....++-.+.
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSAS 493 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeeeeeccceeEEEeeeccccccc
Confidence 3332 012 35789999999999999988 78888999999999999987665553332
Q ss_pred --CCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1291 --AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1291 --~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.-+.+.|-|+....-..|++ ..+....+|..+..+..++||+..-.|.-+-+||
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~----l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRG----LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred cceeeeEEEEEccccccccccc----CCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 12334455544333333432 1224568999999999999999999998888886
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=89.42 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE---EeCCCeEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLV---ASCNGNIRI 1108 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t---gs~DG~IrI 1108 (1348)
..+..+..++.+.+||++..+....++++.... .+..+.... .-+++.|+ .+.....+ +++...+.+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~--~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFI--REDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----Ccceeeee--eccceEEEEeecCCceeeee
Confidence 456667788999999999988888888876443 233333222 34455553 22333333 345566667
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... +..+ .+-||...+.. ++|++|+.+|+++..|..|||-...... .+..+--+|..-|..++..
T Consensus 137 ~s~~~--~~~~------~~lGhvSml~d----VavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 137 LSADS--GRCE------PILGHVSMLLD----VAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLT 203 (390)
T ss_pred ecccc--cCcc------hhhhhhhhhhe----eeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeec
Confidence 76543 3333 24688888887 9999999999999999999998777665 5666665444448888443
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCee
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDML 1215 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~ 1215 (1348)
++..|++|+.|++|++||+++++.+
T Consensus 204 --~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 204 --DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred --cCceeeecCCCCcEEEEecccCCcc
Confidence 4667999999999999999998843
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=73.81 Aligned_cols=235 Identities=12% Similarity=0.120 Sum_probs=128.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1041 ALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1041 l~fspdg~~Latgs~dg~I~VWd~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
++.+.+|+.||+-- |..|.|-..++. ..+.+.+....+.-.-..++| ++|+.+|+.+...|+|+++|+.. ...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g--~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMG--SEL 77 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEeccc--cee
Confidence 56788999888776 777887765543 344444444433346678899 89999999999999999999854 221
Q ss_pred eEEeeeeccc-CCCCcccccceEEEEecC------CCeEEEEECCCeEEEEECCCC--c--ee--eeeecCCCCCCeEEE
Q 000697 1119 KLVTAFSSIQ-GHKPGVRCSNVVVDWQQQ------SGYLYASGEVSSIMLWDLEKE--Q--QM--VNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1119 ~lvs~~~~l~-~h~~~V~si~~~v~ws~~------~~~Ll~gg~Dg~IrVWDl~t~--~--~~--v~~l~~~~~~~VtsL 1185 (1348)
-.+..-.... .....|.+ +.|-+. ...|++-..+|.++-|-+..+ + +. ...+..+....|.++
T Consensus 78 f~I~p~~~~~~d~~~Aiag----l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAG----LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred EEcCcccccCCccccceee----eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 1121111111 11122222 333221 235777788888887765321 1 02 223444545559998
Q ss_pred EEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE-EEEEECCCc------EEEEEc
Q 000697 1186 TASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK-IVSASQAGD------IQFLDI 1257 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~-LaSgs~DG~------I~IWDl 1257 (1348)
.+.+..++|+.|+. ...-..+. .....+++-.+-.+ ...+ .++...|+. -.+|.+
T Consensus 154 -vy~p~h~LLlVgG~~~~~~~~s~---------------a~~~GLtaWRiL~~-~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 154 -VYHPKHRLLLVGGCEQNQDGMSK---------------ASSCGLTAWRILSD-SPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred -EEcCCCCEEEEeccCCCCCcccc---------------ccccCceEEEEcCC-CCcEEEccccCccccccccccceeec
Confidence 55666677766654 32100000 00112222222111 0001 112222211 123332
Q ss_pred CCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1258 RNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1258 r~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
-+. ............|..|..+|||..||+...+|.|.+|++..
T Consensus 217 ~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 217 PSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 221 11111122456899999999999999999999999999643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=72.29 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=127.6
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
+.+|++|++- .|..|.|=...++-. ..+...+.-++..+.=+. ++|++|+..|+.+...|+|+++|+....
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRk----l~WSpD~tlLa~a~S~G~i~vfdl~g~~-- 76 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRK----LAWSPDCTLLAYAESTGTIRVFDLMGSE-- 76 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheE----EEECCCCcEEEEEcCCCeEEEEecccce--
Confidence 4566666654 455666655544211 111111222222333333 9999999999999999999999998754
Q ss_pred eeeecCC------CCCCeEEEEEecCC-----CCEEEEEeCCCeEEEEECCCC--C--eeeEeecCCCCCCCCeEEEEEe
Q 000697 1171 VNPIPSS------SDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTP--D--MLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1171 v~~l~~~------~~~~VtsL~~~s~d-----g~~LvsGs~DG~VrvwDlr~~--~--~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
+..++.. ....|..|.+.... ...|++-..+|.++-|-+..+ + .....+.-...+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 3344322 22346666444433 335666778888888876321 1 1223332222346789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEE--EEEeCCCc------EEEEEcCCceEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII--ASGSAKQL------IKVFSLEGEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~L--asgS~Dg~------I~Vwd~~g~~l~~ 1307 (1348)
|. .+.|++|+.... ..+ .-++....+++-.+-.+.++. ++...|+. -.+|.+-.-.+..
T Consensus 157 p~--h~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PK--HRLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CC--CCEEEEeccCCC------CCc-----cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 98 777777764322 100 011122334443333332211 12222221 1233322111111
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.++ +....|..|..+|||..||+...+|.|.+|+
T Consensus 224 ~~~-------~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 224 RQG-------QEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccc-------cCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 111 2347899999999999999999999999995
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0026 Score=71.08 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=133.7
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
++|+|..||..+|+.+....... ......+... .+++.+++++.++.|..||..+ ++.... ..+ ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~t--G~~~W~---~~~---~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAV---PDGGRVYVASGDGNLYALDAKT--GKVLWR---FDL---PGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEE---EETTEEEEEETTSEEEEEETTT--SEEEEE---EEC---SSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEE---EeCCEEEEEcCCCEEEEEECCC--CCEEEE---eec---cccc
Confidence 37899999999999998886522 0122222222 3677888889999999999866 443322 111 1222
Q ss_pred cccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCC-CCC-eEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 000697 1135 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSS-DCS-ISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-~~~~-~~~-VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~ 1211 (1348)
... . ...++.+++++.++.|+.+|..+++ .+-.. .... ... .... .....++.++++..+|.|..+|.++
T Consensus 69 ~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 69 SGA---P--VVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GSG---E--EEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCSEEEEEETTT
T ss_pred cce---e--eecccccccccceeeeEecccCCcc-eeeeecccccccccccccc-CceEecCEEEEEeccCcEEEEecCC
Confidence 221 1 1247788888888999999999998 66663 3221 110 1111 1122378899999999999999999
Q ss_pred CCeeeEeecCCCCC-CCC------eEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1212 PDMLVCSTRPHTQQ-VER------VVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h-~~~------I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
++. +......... ... +..-.+..+ + .++.++.+|. +.+ |+.++ +.+-... ...+..+ ...++
T Consensus 142 G~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~g~~~~~-d~~tg-~~~w~~~--~~~~~~~-~~~~~ 212 (238)
T PF13360_consen 142 GKL-LWKYPVGEPRGSSPISSFSDINGSPVISD--G-RVYVSSGDGRVVAV-DLATG-EKLWSKP--ISGIYSL-PSVDG 212 (238)
T ss_dssp TEE-EEEEESSTT-SS--EEEETTEEEEEECCT--T-EEEEECCTSSEEEE-ETTTT-EEEEEEC--SS-ECEC-EECCC
T ss_pred CcE-EEEeecCCCCCCcceeeecccccceEEEC--C-EEEEEcCCCeEEEE-ECCCC-CEEEEec--CCCccCC-ceeeC
Confidence 984 3333222111 011 122222223 4 7777777776 555 99988 4333222 2223331 44567
Q ss_pred CEEEEEeCCCcEEEEEc-CCceE
Q 000697 1284 PIIASGSAKQLIKVFSL-EGEQL 1305 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~-~g~~l 1305 (1348)
..+++++.++.|..||. +|+.+
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 78888779999999994 55544
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00069 Score=84.15 Aligned_cols=218 Identities=11% Similarity=0.133 Sum_probs=134.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCC-eEEEEEEeeCCCCEEEEEeCCC-----eEEEEeccCCC
Q 000697 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG-ISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQK 1115 (1348)
Q Consensus 1042 ~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~-ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~~ 1115 (1348)
+|++.+..++.|+.+|.|.+.+-. -+.++.|+.+. .. |..+... ...++|++.+.|+ .|+||+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccC
Confidence 467888899999999998888743 34557788877 55 4444431 2336777777664 49999997643
Q ss_pred C-c-eeEEeeeecccCCCCc-ccccceEEEEecCCCeEEEEECCCeEEEEE--CCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1116 D-K-QKLVTAFSSIQGHKPG-VRCSNVVVDWQQQSGYLYASGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~-~-~~lvs~~~~l~~h~~~-V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD--l~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+ . +.+....+.+ .+..+ -.....+++.+.+-..+++|-.+|.|..+. +.+.......+....+.+||.+ .+..
T Consensus 104 ~n~sP~c~~~~ri~-~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL-~~~~ 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIF-TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL-ALRS 181 (933)
T ss_pred CCCCcceeeeeeee-ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee-EEec
Confidence 2 2 3333111222 22222 112223477888888899998999999883 3333211223333445579999 4555
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-c
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-A 1269 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~ 1269 (1348)
++..++....-..|.+|.+....+..+ .+..|...+.|..+++. ...+++|+. ..+.+||.... .+-.++. +
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~---~ld~~G~~lnCss~~~~--t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK---VLDNNGISLNCSSFSDG--TYQFICAGS-EFLYFYDSDGR-GPCFAFEVG 254 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee---eeccCCccceeeecCCC--CccEEEecC-ceEEEEcCCCc-ceeeeecCC
Confidence 665523333346799999985442233 34456688999999887 444555544 36999998865 4555555 6
Q ss_pred CCCCe
Q 000697 1270 HRGSL 1274 (1348)
Q Consensus 1270 h~~~V 1274 (1348)
|+..+
T Consensus 255 ~kk~~ 259 (933)
T KOG2114|consen 255 EKKEM 259 (933)
T ss_pred CeEEE
Confidence 65443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=89.06 Aligned_cols=271 Identities=13% Similarity=0.203 Sum_probs=156.2
Q ss_pred eEEEEEcCCCCEEEEEE----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1038 TKTALLQPFSPIVVAAD----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs----~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+-..|||..+++++++ ..|.|.||- ++|+.-+...-. -.+++++| +|..-.|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCW--Hpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCW--HPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc----eehhhhcc--ChHHHHHhhccccceeEEEecCC
Confidence 44567999999999887 578898883 445543322211 24567888 77888899999999999999755
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC-Cc-e---------------eeeeecC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-EQ-Q---------------MVNPIPS 1176 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t-~~-~---------------~v~~l~~ 1176 (1348)
.+... ....|..++.. +.|+++|+.++++..-|.|.+|.... ++ + +...+..
T Consensus 91 --~e~ht-----v~~th~a~i~~----l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~ 159 (1416)
T KOG3617|consen 91 --TETHT-----VVETHPAPIQG----LDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY 159 (1416)
T ss_pred --ceeee-----eccCCCCCcee----EEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence 22222 24567777777 99999999999999999999996541 11 0 0011110
Q ss_pred C--------------CCCCeEEE-------------EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----CC
Q 000697 1177 S--------------SDCSISAL-------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----TQ 1224 (1348)
Q Consensus 1177 ~--------------~~~~VtsL-------------~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----~~ 1224 (1348)
. .+..+..+ ..-.++|..|..++.+|+|+-.|-......+...... .+
T Consensus 160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~ 239 (1416)
T KOG3617|consen 160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMG 239 (1416)
T ss_pred ChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhc
Confidence 0 00001101 1123467788889999999988865443222221100 01
Q ss_pred CCCCeEEEE--------EecC---------------CCCC--EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1225 QVERVVGIS--------FQPG---------------LDPA--KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1225 h~~~I~sl~--------~sp~---------------~~g~--~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
....|..+. +.+. .+|+ -++++-..|. ++. .....+. ....++|+++
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv-----Lr~--~eKyg~e-~ge~~~c~cY 311 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV-----LRK--SEKYGLE-LGEGILCMCY 311 (1416)
T ss_pred ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc-----ccC--Ccchhhh-cCCceEEEEE
Confidence 111222111 1111 0000 0222222220 010 0111111 2356999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcC-----C---ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1280 HRHAPIIASGSAKQLIKVFSLE-----G---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1280 spdg~~LasgS~Dg~I~Vwd~~-----g---~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
+..+..++.|...|.+.+|.-. | .....+.+ .. ...+.|+.+.|.|-...++..+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~-~~----e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG-KR----ESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecC-ch----hhccceEEEEeccccchhhhhh
Confidence 9999999999999999999722 2 22333333 11 2347899999998766555444
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-06 Score=100.67 Aligned_cols=214 Identities=15% Similarity=0.218 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~ 1112 (1348)
...-+|++|+-+.++|++|+..|.|++|++.+|........|. ..|+-+.= +.||..+++.+.-. -..+|++.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---cccccccc--cCCcceeeeeccccCchHHHhccc
Confidence 3778999999999999999999999999999999999999999 88988875 77888888776543 47899985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC--CCCeEEEEEecC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQV 1190 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~--~~~VtsL~~~s~ 1190 (1348)
. .+.. . +.+.+ -. ++.|+.....-+.|+......+||+.+.. .+.++-... ...-..++.++|
T Consensus 1176 s-~~~~--~---Hsf~e----d~----~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1176 S-TGGP--R---HSFDE----DK----AVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred c-ccCc--c---ccccc----cc----eeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence 4 1111 1 11211 12 26776655555666666778999999998 555532211 111223447788
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+..+++ .|| .+||+|..+ .++.+..+. .-..=.|+|+ |..++..+. |||+|+. +.+++...-
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft----~~~~G~FHP~--g~eVIINSE-----IwD~RTF-~lLh~VP~L 1302 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE-AIHRFDQFT----DYGGGGFHPS--GNEVIINSE-----IWDMRTF-KLLHSVPSL 1302 (1516)
T ss_pred CcceEe---eCc--eeeeeccHH-HHhhhhhhe----ecccccccCC--CceEEeech-----hhhhHHH-HHHhcCccc
Confidence 887776 456 479999886 555554442 1223358999 888887764 8999987 566555432
Q ss_pred CCCeEEEEEeCCCCEEEE
Q 000697 1271 RGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~Las 1288 (1348)
. -..+.|+..|.++..
T Consensus 1303 d--qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 D--QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred c--ceEEEeccCccchhh
Confidence 2 356777777776654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.4e-05 Score=85.29 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=104.9
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE---ECCCeEEEEECCCC
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g---g~Dg~IrVWDl~t~ 1167 (1348)
++++.+|+++..+....+++........++... ... ...-+. +.+-.+.....++ |+...+.+|....+
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~---~~v-~~~~~a----i~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV---SCV-PKRPTA----ISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeE---eec-ccCcce----eeeeeccceEEEEeecCCceeeeeeccccc
Confidence 567788888887777777776553332333311 111 111111 3333445555555 45666777776654
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. ...+-+|-.- ++.+ .+++|++.++++..|+.||+-.....- .+..+ .-||+..|..+++.++ ..|++|+
T Consensus 143 ~--~~~~lGhvSm-l~dV-avS~D~~~IitaDRDEkIRvs~ypa~f-~Iesf--clGH~eFVS~isl~~~---~~LlS~s 212 (390)
T KOG3914|consen 143 R--CEPILGHVSM-LLDV-AVSPDDQFIITADRDEKIRVSRYPATF-VIESF--CLGHKEFVSTISLTDN---YLLLSGS 212 (390)
T ss_pred C--cchhhhhhhh-hhee-eecCCCCEEEEecCCceEEEEecCccc-chhhh--ccccHhheeeeeeccC---ceeeecC
Confidence 3 4445555554 8999 788999999999999999997665433 23332 2389999999999875 5699999
Q ss_pred CCCcEEEEEcCCCCcceEEEe
Q 000697 1248 QAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
.|++|++||++++ +.+.++.
T Consensus 213 GD~tlr~Wd~~sg-k~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSG-KLLDTCD 232 (390)
T ss_pred CCCcEEEEecccC-Ccccccc
Confidence 9999999999998 4555554
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.1e-05 Score=73.89 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=106.4
Q ss_pred HHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCC
Q 000697 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1348)
Q Consensus 497 al~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~ 576 (1348)
.++.|++++++++|++...++|.-++..++.++...+.+....++.++++.++.+|.+.+ +..+.-++.+|+.|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCc
Confidence 357899999999999888889999999999999998888888999999999999998754 689999999999999999
Q ss_pred cchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 577 ~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
+.......+.++...+..+|+ +.+..+|..++.+|+.|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~-------~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLD-------SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHh-------cCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999 778999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0039 Score=76.19 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=119.8
Q ss_pred CeEEEEEEeeCCCCE-EEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---
Q 000697 1082 GISKLCLVNELDVSL-LLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--- 1154 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~-L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg--- 1154 (1348)
.+....| ++||+. ++..+.+ ..|.++|+.+ ++.+.+. ...+... ...|+|++..++...
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~~lt------~~~g~~~----~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYT--GKKEKIA------SSQGMLV----VSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCC--CcEEEEe------cCCCcEE----eeEECCCCCEEEEEEccC
Confidence 4566778 789874 5544433 4577778755 5555441 1222222 267999998877653
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1155 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1155 ~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
.+..|.++|+.++. ...+..+... .... .++++|+.|+..+.. | .|.+.|+.+++ ..+.. ..+. . .
T Consensus 255 g~~~Iy~~dl~~g~--~~~LT~~~~~-d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt--~~g~--~--~ 323 (419)
T PRK04043 255 GQPDIYLYDTNTKT--LTQITNYPGI-DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVV--FHGK--N--N 323 (419)
T ss_pred CCcEEEEEECCCCc--EEEcccCCCc-cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCc--cCCC--c--C
Confidence 34568888988776 3334333221 2233 578899887776642 3 58888888776 22222 1111 1 2
Q ss_pred EEEecCCCCCEEEEEECC---------CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEE
Q 000697 1232 ISFQPGLDPAKIVSASQA---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFS 1299 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~D---------G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd 1299 (1348)
..|+|+ |+.++..+.. ..|.+.|+..+ . .+.+... +......|+|||+.++..+.+ ..+.+.+
T Consensus 324 ~~~SPD--G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 324 SSVSTY--KNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred ceECCC--CCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 489999 8777666543 25788888766 2 3334332 223357899999977665433 2466777
Q ss_pred cCCceEEEEec
Q 000697 1300 LEGEQLGTIRY 1310 (1348)
Q Consensus 1300 ~~g~~l~~i~~ 1310 (1348)
++|.....+..
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 88876666644
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=91.37 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=129.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee
Q 000697 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1093 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
++..++.|+-...+..+|+.+ .+.... ..-..+.+. .+. .++..+++|...|+|.+-|.++.+ .++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~--~~e~r~-----~~v~a~~v~----imR--~Nnr~lf~G~t~G~V~LrD~~s~~-~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT--EKETRT-----TNVSASGVT----IMR--YNNRNLFCGDTRGTVFLRDPNSFE-TIH 211 (1118)
T ss_pred CCcceeecchhhheeeeeccc--ceeeee-----eeccCCceE----EEE--ecCcEEEeecccceEEeecCCcCc-eee
Confidence 556677777777788888865 221111 111111121 133 357889999999999999999999 999
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEEeC---------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAGFV---------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1243 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsGs~---------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~L 1243 (1348)
++.+|++. |..+ +..|+.|++++. |.-|+|||+|..+.+. .+... ..-.-+.|+|. -...+
T Consensus 212 t~~aHs~s-iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~----~~P~flrf~Ps-l~t~~ 281 (1118)
T KOG1275|consen 212 TFDAHSGS-ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFP----YGPQFLRFHPS-LTTRL 281 (1118)
T ss_pred eeeccccc-eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccC-Ccccc----cCchhhhhccc-ccceE
Confidence 99999887 7665 557899998875 5568999999776322 12111 12256778887 46778
Q ss_pred EEEECCCcEEEEEcCCCCcc---eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1244 VSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1244 aSgs~DG~I~IWDlr~~~~~---v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
++++..|...+-|..+...+ +..+......+.+++++++|..+|.|..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88899999999994433222 333444455699999999999999999999999997
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.011 Score=66.98 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=134.7
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1040 TALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1040 sl~fsp-dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+.+ ...+..|+.+...+ +.++|..+ ++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----~~~G~~~--~~~~g~l~v~~~~~-~~~~d~~~--g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----GPNGMAF--DRPDGRLYVADSGG-IAVVDPDT--GKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----SEEEEEE--ECTTSEEEEEETTC-EEEEETTT--TEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----CCceEEE--EccCCEEEEEEcCc-eEEEecCC--CcE
Confidence 567888 55566665578999999998765433 3322 2567777 42335566666554 45558755 443
Q ss_pred eEEeeeecccC-CCCcccccceEEEEecCCCeEEEEECC--------CeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1119 KLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEV--------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1119 ~lvs~~~~l~~-h~~~V~si~~~v~ws~~~~~Ll~gg~D--------g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
+....... .. .....+. +++.+++...++.... |.|..++.. ++ . ..+...-. ..+.| .++
T Consensus 73 ~~~~~~~~-~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~-~~~~~~~~-~pNGi-~~s 142 (246)
T PF08450_consen 73 TVLADLPD-GGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-V-TVVADGLG-FPNGI-AFS 142 (246)
T ss_dssp EEEEEEET-TCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-E-EEEEEEES-SEEEE-EEE
T ss_pred EEEeeccC-CCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-E-EEEecCcc-cccce-EEC
Confidence 33311100 11 2223344 7788887755554332 567778877 44 2 22222222 25778 677
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCCCe-e--eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1190 VHGGQLA-AGFVDGSVRLYDVRTPDM-L--VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1190 ~dg~~Lv-sGs~DG~VrvwDlr~~~~-~--v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
++++.|+ +-+..+.|..||+..... . .+.+.......+..-.+++..+ |++.++....+.|.++|.+ + +.+.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G-~~~~ 218 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-G-KLLR 218 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-S-CEEE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-c-cEEE
Confidence 8887664 667788999999974432 1 1122122221234788999998 9988888889999999988 4 6787
Q ss_pred EEecCCCCeEEEEEe-CCCCEEEE
Q 000697 1266 TIDAHRGSLSALAVH-RHAPIIAS 1288 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~s-pdg~~Las 1288 (1348)
.+......+++++|. ++...|..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEE
Confidence 777665689999994 56554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00054 Score=85.04 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=127.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-----eEEEEECCCC---
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-----SVRLYDVRTP--- 1212 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-----~VrvwDlr~~--- 1212 (1348)
-+|++.++.++.|+.+|.|.+.+-.- + .++.++.+..+-|+.+ +...+.+.|++.+.|+ .|++||+...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~-~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-Q-LIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-e-eeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 57888999999999999888877432 2 4577777666546666 4444446788777665 4999999743
Q ss_pred --Ceee---Eeec-CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC---CCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1213 --DMLV---CSTR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1213 --~~~v---~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr---~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
..+. +.+. .......++.+++++.+ -..+|+|-.||.|..+.-. ..+....-....+++||++++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1122 2221 11123567889999988 8999999999999998633 2212222222346799999999988
Q ss_pred CEEEEEeCCCcEEEEEcCCce--EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1284 PIIASGSAKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~~g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..++-......|.+|.++|+. +..+.. +..++.|.+|++....+++++ +..+.+|+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDN--------NGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeecc--------CCccceeeecCCCCccEEEec-CceEEEEc
Confidence 862222223579999988877 333333 337888888887766455554 34566654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=80.23 Aligned_cols=256 Identities=19% Similarity=0.276 Sum_probs=181.5
Q ss_pred CcchHHhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHH-----------
Q 000697 436 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLA----------- 497 (1348)
Q Consensus 436 ~~ff~~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~la----------- 497 (1348)
|+=.++||.|--.|=++=+....|| |-.|-+.+.+-+-.+.+-. |= -.||.-.-
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlq------fE--AaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQ------FE--AAWALTNIASGTTQQTKVV 153 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHH------HH--HHHHHhhhccCcccceEEE
Confidence 5556788877555544444555566 4455555555333332211 21 12664432
Q ss_pred HhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCc-hHHHHHHHHHHHHHhcC-
Q 000697 498 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAY-PEQRAMAAFVLAVIVDG- 575 (1348)
Q Consensus 498 l~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~-~~~r~~~afiLa~l~~~- 575 (1348)
+..|-.|.|++||.++..+.|.-++.-+.-|--..+.|.--.+..|...-.+.+|.+.... ..+| -+...||-+|++
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGk 232 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGK 232 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCC
Confidence 3568899999999999888988777666666666667777777888888889888765431 2333 345678999988
Q ss_pred CcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHH
Q 000697 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRAS 655 (1348)
Q Consensus 576 ~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa 655 (1348)
.|.--|.-+ ..++.++.+++. ..+||+--=+|-+++.|-++..|.-...++.+++.+|+.+|.+++..|..-
T Consensus 233 nP~P~w~~i-sqalpiL~KLiy-------s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 233 NPPPDWSNI-SQALPILAKLIY-------SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred CCCCchHHH-HHHHHHHHHHHh-------hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 455555544 345778888888 678999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 656 AVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 656 ~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
++-+.|.+|... +.+.++-+.-.....+..+++.+...+|||+-+-+|-+-..
T Consensus 305 alR~vGNIVTG~--------------D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 305 ALRSVGNIVTGS--------------DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHhhcCeeecC--------------ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC
Confidence 999999998321 11112334455566677777888889999999888765543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=95.22 Aligned_cols=152 Identities=21% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCCchhhHHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000697 459 PPEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1348)
Q Consensus 459 ~p~~lP~vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q 536 (1348)
+++.+|.+.++|..+. -|..|+.-|.++.+.- .--+.++++|+++.++.|..++-.+..+=.
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 5677888888886654 5555666666653211 112456677777777888776666644321
Q ss_pred hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000697 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1348)
Q Consensus 537 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l 616 (1348)
+....++..|.+++ ++.|..++..|+.+ .. ...++..|. |++|+||..++-
T Consensus 714 ------~~~~~l~~~L~D~d--~~VR~~Av~aL~~~-~~-------------~~~l~~~l~-------D~~~~VR~~aa~ 764 (897)
T PRK13800 714 ------GDAALFAAALGDPD--HRVRIEAVRALVSV-DD-------------VESVAGAAT-------DENREVRIAVAK 764 (897)
T ss_pred ------CCHHHHHHHhcCCC--HHHHHHHHHHHhcc-cC-------------cHHHHHHhc-------CCCHHHHHHHHH
Confidence 11224566676655 47787777777764 11 122445566 777888888888
Q ss_pred HHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+|+.+......+ ...|..+++|+.|+||++++-+|+.+-
T Consensus 765 aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 765 GLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 888776542211 235667777777777777777777664
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=81.64 Aligned_cols=252 Identities=13% Similarity=0.162 Sum_probs=166.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--C-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEec
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEE--D-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t--~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl 1111 (1348)
.-|+.+.-+ --+++.+++-||.++.|.-.. | +.+..+..|. ..|.+++. +.++.++.|++. |..++++|+
T Consensus 10 d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL---~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 10 DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL---GVILSLAV--SYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHH---HHHHhhhc--cccceeEeeccCcccceeEEEe
Confidence 345544333 346899999999999996543 2 4556677787 78888888 679999999888 999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCC----eEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG----YLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~----~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.+- .++.-.+ +....+ + ++|....+ .++++. ++|.|.|+|-.........+..-+..+|..+
T Consensus 84 En~----DminmiK-L~~lPg------~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i- 150 (558)
T KOG0882|consen 84 ENF----DMINMIK-LVDLPG------F-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI- 150 (558)
T ss_pred ecc----chhhhcc-cccCCC------c-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE-
Confidence 651 1110000 111111 1 34433333 455553 7799999997765412334444455679999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCC----CC-eeeEeec------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRT----PD-MLVCSTR------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~----~~-~~v~~~~------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
...+.++.+++....|.|.-|.... .+ .....++ .....+...+++.|+|+ +..+.+-+.|..|+++
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--GAQISTLNPDRKVRGF 228 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc--cCcccccCcccEEEEE
Confidence 6777899999999999999998773 11 0111110 11123467889999999 9999999999999999
Q ss_pred EcCCCCcceEEEec--------------------------------CC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNHKDAYLTIDA--------------------------------HR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~--------------------------------h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+.+++ +.++.+.. |. ..-+.+.|...|.+|+-|+-=| |+|.++..
T Consensus 229 ~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 229 VFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred Eeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 99987 34433321 11 1235677888899999887655 88888665
Q ss_pred ceEEEEec
Q 000697 1303 EQLGTIRY 1310 (1348)
Q Consensus 1303 ~~l~~i~~ 1310 (1348)
..+..+-+
T Consensus 307 n~v~ri~g 314 (558)
T KOG0882|consen 307 NTVVRILG 314 (558)
T ss_pred CeEEEEec
Confidence 55544443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.9e-05 Score=58.81 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=36.4
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.015 Score=64.88 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=111.3
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1146 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1146 ~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
+++.+++++.++.|..||..+++ .+-........... . ...++.+++++.++.|+.+|.++++..-+.......-
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~-~---~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGK-VLWRFDLPGPISGA-P---VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSE-EEEEEECSSCGGSG-E---EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-EEEEeeccccccce-e---eecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 58899999999999999999998 66665542221111 1 1245677778889999999999998544322111000
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC----------eEEEEEeCCCCEEEEEeCCCc-
Q 000697 1226 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS----------LSALAVHRHAPIIASGSAKQL- 1294 (1348)
Q Consensus 1226 ~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~----------VtsLa~spdg~~LasgS~Dg~- 1294 (1348)
............ +..++.+..+|.|..+|.+++ +.+......... +.+-.+..++ .+..++.++.
T Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 110 AGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp CSTB--SEEEEE--TTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred cccccccCceEe--cCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 112222333333 678888888999999999998 676666654322 1222222244 6666666775
Q ss_pred EEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+ |.. |+.+ .+. .. ..+.. ....++..|+.++.|+.|..||
T Consensus 186 ~~~-d~~tg~~~--w~~-~~-------~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 186 VAV-DLATGEKL--WSK-PI-------SGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp EEE-ETTTTEEE--EEE-CS-------S-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred EEE-ECCCCCEE--EEe-cC-------CCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 555 854 5434 232 11 22222 1356777888887899998875
|
... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=92.99 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=108.3
Q ss_pred chhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000697 462 QLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 462 ~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
.++.+++.|..+ .-|..|+..|+++-+ .+.+|-++++|.++..+.|..++--+.+|....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 566778888775 466678888887642 346788889999998899988888887774322221
Q ss_pred hhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
...+..|++++ ++.|..++-.|+.+-.. -...++..|. |++|.||..++.+|+
T Consensus 687 ------~~L~~~L~~~d--~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-------D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 687 ------PALRDHLGSPD--PVVRAAALDVLRALRAG------------DAALFAAALG-------DPDHRVRIEAVRALV 739 (897)
T ss_pred ------HHHHHHhcCCC--HHHHHHHHHHHHhhccC------------CHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 23445666543 68999998888876311 1235667888 899999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.+ +. .+.|+.+++|++|+||.+++-+|+.+-
T Consensus 740 ~~-~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 740 SV-DD-------------VESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred cc-cC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 86 11 124778999999999999999999885
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=82.89 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~I 1159 (1348)
+.|+.+.- ...+++.+++-||.++.|.-.... ..+.+ +.+..|...+.+ ++-+.++-.+.+.++ |..+
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~is-GvEfV---KhFraHL~~I~s----l~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRIS-GVEFV---KHFRAHLGVILS----LAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCcc-ceeeh---hhhHHHHHHHHh----hhccccceeEeeccCcccce
Confidence 56666554 467899999999999999864311 22333 345556666665 555556655566576 8999
Q ss_pred EEEECCCCceeeeeecCCC-CCCeEEEEEecCCC----CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1160 MLWDLEKEQQMVNPIPSSS-DCSISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~-~~~VtsL~~~s~dg----~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
+++|++.-. .+.-++... ...+. |....| .+-++...+|.+.++|-+...+....++ .-|.++|..+.+
T Consensus 79 KvfDvEn~D-minmiKL~~lPg~a~---wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFD-MINMIKLVDLPGFAE---WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRY 152 (558)
T ss_pred eEEEeeccc-hhhhcccccCCCceE---EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEe
Confidence 999998776 443333211 11122 222333 3344456789999999987654433332 247799999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCC-CC----cce---------EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRN-HK----DAY---------LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~-~~----~~v---------~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.+. +..+++....|.|.-|.... .+ ... ..+.-.+...+++.|+|+|..+++-+.|..|++++.
T Consensus 153 ~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 998 99999999999999998872 10 111 111122456789999999999999999999999995
Q ss_pred -CCceEEE
Q 000697 1301 -EGEQLGT 1307 (1348)
Q Consensus 1301 -~g~~l~~ 1307 (1348)
+|+.++.
T Consensus 231 KtGklvqe 238 (558)
T KOG0882|consen 231 KTGKLVQE 238 (558)
T ss_pred ccchhhhh
Confidence 4444433
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00027 Score=79.16 Aligned_cols=234 Identities=15% Similarity=0.231 Sum_probs=178.0
Q ss_pred CchhhHHHHhhchhhH--HHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhH--HHHHHHHHhccC---h
Q 000697 461 EQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQI--LVFIWTKILALD---K 533 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~r--lral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~--~~FIwa~il~~~---~ 533 (1348)
+-.|.+.|+|.|.... -.|+-.|++.-.-++-++.-.|..|.+--+|-||++.+..++-+ +...++-.|+.- |
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 6789999999996554 45666777777777788888899999999999999988765543 566677777763 2
Q ss_pred hhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHH
Q 000697 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1348)
Q Consensus 534 ~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w 613 (1348)
+-+. + ........+.+...+ +|.--=+|..+|.|.++-.+.-.+-+..+....+.++|. .++..+..=
T Consensus 237 ~w~~--i-sqalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs-------~~sa~iqtP 304 (526)
T COG5064 237 DWSN--I-SQALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS-------HESAKIQTP 304 (526)
T ss_pred chHH--H-HHHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc-------CccccccCH
Confidence 2221 1 122345555665555 477777888889998888887777789999999999998 556556666
Q ss_pred HHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHH
Q 000697 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1348)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1348)
++=.+|.+..+.+.-..+-|++++...+..+|+.+---+|+|++.-++.+-. +..+.-++-+|..+
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--------------Gnteqiqavid~nl 370 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--------------GNTEQIQAVIDANL 370 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--------------CCHHHHHHHHhccc
Confidence 6667899999988877778999999999999999999999999999998761 11222345577777
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 694 IRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
+-.|+.++.-+.-..|||+-++++-..
T Consensus 371 iPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 371 IPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888877777889999999988654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.012 Score=71.51 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC--CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD--KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~--~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
+..++++..+|.+..+|.++|+.+..+....+.. ....+-.. .+..++.++.+|.+..+|..+ ++..-....
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v----~~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~ 233 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT----AFGGAIVGGDNGRVSAVLMEQ--GQLIWQQRI 233 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----ECCEEEEEcCCCEEEEEEccC--Chhhheecc
Confidence 4567778889999999999999988876543100 00111112 234577788889998888765 332211000
Q ss_pred ecccC-C----CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe
Q 000697 1125 SSIQG-H----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1125 ~~l~~-h----~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
..-.+ + ...+... ... .++.+++++.+|.+..+|..+++ .+-.... .. ...+ . ..++.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~s---P~v--~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~--~~-~~~~-~--~~~~~vy~~~ 301 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTT---PVV--VGGVVYALAYNGNLVALDLRSGQ-IVWKREY--GS-VNDF-A--VDGGRIYLVD 301 (394)
T ss_pred ccCCCccchhcccccCCC---cEE--ECCEEEEEEcCCeEEEEECCCCC-EEEeecC--CC-ccCc-E--EECCEEEEEc
Confidence 00000 0 0001110 011 26788888899999999999988 5543332 11 1122 1 1366788888
Q ss_pred CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeE-EEE
Q 000697 1200 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALA 1278 (1348)
Q Consensus 1200 ~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vt-sLa 1278 (1348)
.+|.+..+|..+++..-+ ..... .....+..+. +..++.++.+|.|...|..++ +.+...+.....+. ...
T Consensus 302 ~~g~l~ald~~tG~~~W~-~~~~~--~~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 302 QNDRVYALDTRGGVELWS-QSDLL--HRLLTAPVLY----NGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPV 373 (394)
T ss_pred CCCeEEEEECCCCcEEEc-ccccC--CCcccCCEEE----CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCE
Confidence 999999999998873222 11111 0112222232 557888999999999999987 66666654333232 222
Q ss_pred EeCCCCEEEEEeCCCcEEEEE
Q 000697 1279 VHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1279 ~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+ .+..|+.++.||.|+.++
T Consensus 374 ~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 374 V--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred E--ECCEEEEEeCCceEEEEe
Confidence 2 234677788899887765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=82.53 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=106.7
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC-CCceeEEeeeecccCCC
Q 000697 1053 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1053 gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~ 1131 (1348)
.+.+-.|-+-|+++|.. ..|. .. +.|.++.| ...++++..|..+|.|.++|+... .|+.... + .--|.
T Consensus 230 ~G~sqqv~L~nvetg~~-qsf~-sk---sDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a---~-rlyh~ 298 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ-QSFQ-SK---SDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA---Q-RLYHD 298 (425)
T ss_pred ccccceeEEEEeecccc-cccc-cc---hhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcce---E-EEEcC
Confidence 34466788888887643 3344 22 57999999 677899999999999999999763 2222221 1 12377
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee---eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~---v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
..|+++.. +.| ++..|++++.+|.|++||.+--+ + ++.+.+|.+..-.-.....+....+++++.|...|+|.
T Consensus 299 Ssvtslq~-Lq~--s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 299 SSVTSLQI-LQF--SQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cchhhhhh-hcc--ccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 77777332 333 57789999999999999999777 6 88888886542222223455667888899999999999
Q ss_pred CCCCCeeeEee
Q 000697 1209 VRTPDMLVCST 1219 (1348)
Q Consensus 1209 lr~~~~~v~~~ 1219 (1348)
++.+. ..+++
T Consensus 375 l~~gh-Ll~ti 384 (425)
T KOG2695|consen 375 LDSGH-LLCTI 384 (425)
T ss_pred cccCc-eeecc
Confidence 99887 55544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0077 Score=77.79 Aligned_cols=249 Identities=14% Similarity=0.117 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc---
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY--- 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~--- 1112 (1348)
..|.++.|..+...++.+...|.|.+-|.++..... ...-. .+|.+++| ++|+..++..+..+++.+-.-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd---~GI~aasw--S~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVD---NGISAASW--SPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeecc---CceEEEee--cCCCcEEEEEeCCcEEEEEeccccc
Confidence 579999999999999999999999999887654322 22222 58999999 8999999999988887765430
Q ss_pred -CC-------CCceeEE--------eeeecccC---------CCC--c---ccccceEEEEecCCCeEEEEE----CC-C
Q 000697 1113 -DQ-------KDKQKLV--------TAFSSIQG---------HKP--G---VRCSNVVVDWQQQSGYLYASG----EV-S 1157 (1348)
Q Consensus 1113 -~~-------~~~~~lv--------s~~~~l~~---------h~~--~---V~si~~~v~ws~~~~~Ll~gg----~D-g 1157 (1348)
.. .+..+.+ +.++.-.+ +.. + +.+--..+.|--+|.++++.+ .+ +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 00 0000000 01110000 000 0 111123489998888888852 33 7
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1158 ~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.|+|||.+ +. +..........=.++ .|.|.|..+++-. .|+.|.+|..+.-..-.... ........|..++|
T Consensus 223 kirV~drE-g~--Lns~se~~~~l~~~L-sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GA--LNSTSEPVEGLQHSL-SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-ch--hhcccCcccccccce-eecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-CCcccccchheeee
Confidence 89999987 33 333333333323556 5667888888743 45679999876433211111 12222345999999
Q ss_pred ecCCCCCEEEE---EECCCcEEEEEcCCCCc-ceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1235 QPGLDPAKIVS---ASQAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1235 sp~~~g~~LaS---gs~DG~I~IWDlr~~~~-~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
+.+ +..|++ ......|++|-+.+..- ....+....... +.|||... .+.+-..+|.+.+++
T Consensus 298 ns~--sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 298 NSN--SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cCC--CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 998 888887 44445599999886521 112222222222 67777433 222222455555544
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.3e-05 Score=93.85 Aligned_cols=233 Identities=22% Similarity=0.287 Sum_probs=145.4
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-----CC
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EV 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-----~D 1156 (1348)
.+.|+++....+..++++|..+|.|-+-.+...... .+....++....++ ++|++-+..++++| .|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~----lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTS----LAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccc----cccccccHHHHHhhhhhhccc
Confidence 566777643445568889999999999887653222 22345667776666 88987655555554 35
Q ss_pred CeEEEEECCCCce-eee--eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000697 1157 SSIMLWDLEKEQQ-MVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1157 g~IrVWDl~t~~~-~v~--~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
..+.|||+.+.-. +.. .+.+.......++++. .+.+++.+|.....++++|+|........+. +..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccce
Confidence 6799999987620 111 1222222335677444 7888999999999999999995432222221 24677888
Q ss_pred EecCCCCCEEEEEECCCcEEEEE-cCCCCcceEEEecCCC----CeEEEEEeCCCC-EEEEEeC-CCcEEEEEcC--C--
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLD-IRNHKDAYLTIDAHRG----SLSALAVHRHAP-IIASGSA-KQLIKVFSLE--G-- 1302 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWD-lr~~~~~v~t~~~h~~----~VtsLa~spdg~-~LasgS~-Dg~I~Vwd~~--g-- 1302 (1348)
+.|- .++++++-. ||.|.+|| .++-+.++.++...+. .+..++|.|... .+++.+. .++|+.|++. +
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 8885 377777665 99999999 5554445544443333 489999999755 4555544 4689999842 1
Q ss_pred ---ceEEEEeccCCcccc---cccCCeEEEEEeCCC
Q 000697 1303 ---EQLGTIRYHHPSFMA---QKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1303 ---~~l~~i~~~h~~f~~---~~~~~Vtslafspdg 1332 (1348)
+.-..+.. ...|.- ...+.|.+..||+..
T Consensus 281 ~s~nn~~~~~~-~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 281 GSANNSVFVNY-ESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccccccceeee-cccccccccccccceeecCcCcCC
Confidence 11111111 111211 224578888888755
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=75.71 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
+..+..|+-.|--|+.----| +.-++.|+..-++..|+++..++|..++++++.+....|.+|+..+..++....+.+|
T Consensus 97 le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567778888777776222222 2235889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
...+. -.-|.=+-|-++.++++++.||..-++.+.+..+...|+.- +.+..++.=++++++.|......-+...
T Consensus 176 s~~~~-~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-----~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 176 SSDDP-NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-----NTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred ccCCC-chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-----CcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 84443 34557788889999999999999999999999999999831 2578888999999999998766666655
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
-.......+..+..-..-+++-+++-++-+++.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 555666666677777777899998888888873
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=57.23 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=34.6
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.+.++++ |. +.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~-h~-------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HS-------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SS-------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CC-------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356677777 65 8999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=71.89 Aligned_cols=190 Identities=7% Similarity=-0.026 Sum_probs=113.4
Q ss_pred CeEEEEEcCCCCE-EEEEEC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCC--eEEEE
Q 000697 1037 GTKTALLQPFSPI-VVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNG--NIRIW 1109 (1348)
Q Consensus 1037 ~I~sl~fspdg~~-Latgs~---dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG--~IrIW 1109 (1348)
.+..-.|+|||+. ++..+. +..|.++|+.+++...... .. +......| ++||+.|+. .+.+| .|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~---g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ---GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC---CcEEeeEE--CCCCCEEEEEEccCCCcEEEEE
Confidence 4567889999984 664443 3468888998876544333 22 34556778 789976654 44444 46666
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CC--eEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
++.. +..+. +..+...... ..|+|++..|+..++ .| .|.++|+.+++ ..+ +...... ..
T Consensus 263 dl~~--g~~~~------LT~~~~~d~~----p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~r-lt~~g~~---~~- 324 (419)
T PRK04043 263 DTNT--KTLTQ------ITNYPGIDVN----GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQ-VVFHGKN---NS- 324 (419)
T ss_pred ECCC--CcEEE------cccCCCccCc----cEECCCCCEEEEEECCCCCceEEEEECCCCC-eEe-CccCCCc---Cc-
Confidence 6644 33332 2322221122 579999988877763 23 68888998877 322 2221111 12
Q ss_pred EecCCCCEEEEEeCC---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-Cc--EEE
Q 000697 1187 ASQVHGGQLAAGFVD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GD--IQF 1254 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D---------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G~--I~I 1254 (1348)
.++++|+.++..... ..|.+.|+.++. .. .+.. . .......|+|+ |+.++..+.+ +. +.+
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~-~LT~-~---~~~~~p~~SPD--G~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IR-RLTA-N---GVNQFPRFSSD--GGSIMFIKYLGNQSALGI 396 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eE-ECCC-C---CCcCCeEECCC--CCEEEEEEccCCcEEEEE
Confidence 568899988776653 368888888776 32 2211 1 12335889999 7766655543 33 455
Q ss_pred EEcC
Q 000697 1255 LDIR 1258 (1348)
Q Consensus 1255 WDlr 1258 (1348)
.++.
T Consensus 397 ~~l~ 400 (419)
T PRK04043 397 IRLN 400 (419)
T ss_pred EecC
Confidence 5554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.6e-05 Score=92.03 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=131.7
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~ 1149 (1348)
.++|..++ ...+|++| +.+.+.|++|+..|.|+++++.+ |..+ ....+|...++. +.-+.+|..
T Consensus 1094 w~~frd~~---~~fTc~af--s~~~~hL~vG~~~Geik~~nv~s--G~~e-----~s~ncH~SavT~----vePs~dgs~ 1157 (1516)
T KOG1832|consen 1094 WRSFRDET---ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSS--GSME-----ESVNCHQSAVTL----VEPSVDGST 1157 (1516)
T ss_pred chhhhccc---cceeeEEe--ecCCceEEeeeccceEEEEEccC--cccc-----cccccccccccc----ccccCCcce
Confidence 34566677 78999999 78899999999999999999977 4333 236788888877 565667888
Q ss_pred EEEEEC-CC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1150 LYASGE-VS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1150 Ll~gg~-Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
+++.+. .. -..+|++..--...+++.+. .++ -++.....-+.|+....+.+||+.+...+...+....+...
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed-----~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED-----KAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccccc-----cee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 777753 33 57799987533255555542 333 23333333445666678999999998855443433222233
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.-++..|+|. ...++ .|| .+||+|.. +.++.|......+ .=.|||+|.-++..+ .|||+.
T Consensus 1232 ~~n~a~FsP~--D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1232 SNNLAHFSPC--DTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred hccccccCCC--cceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhH
Confidence 3478899998 66554 345 48999987 6777666443222 236999999888776 478854
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0046 Score=79.28 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=127.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~I 1159 (1348)
....+|+.-...|..+++-|+ .|-|++... .+..+..+.+..+....+......-.+-...+...|+.. .....|
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~-~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGS---KIGVFKNTD-DDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CccceeEeeeccCceEEECCC---cEeEEECCC-CCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 344555552112444444333 477777653 233444444333332222111100012233444555554 356789
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEec----CCCCEEEEEeCCCeEEEEECCCCC-eeeEeecCCC-CCCCCeEEEE
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQ----VHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHT-QQVERVVGIS 1233 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s----~dg~~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~-~h~~~I~sl~ 1233 (1348)
+-.|+++++ .+..+..+...+|..++-.. .++...+.|-.+..+..||.|-.. +++... .+. ......+|++
T Consensus 507 y~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 507 YKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNNFSCFA 584 (794)
T ss_pred EEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCCceEEE
Confidence 999999999 99999998877777773221 123455678889999999999643 233211 111 2234567777
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
-+. ..+||+|+.+|.||+||- .+......+.+-..+|.+|+++.||+++++.+. ..+.+++
T Consensus 585 Tt~---~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 585 TTE---DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ecC---CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 654 468999999999999994 333555566677889999999999998877654 4677777
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=78.31 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=117.7
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
+..++-|+.+|.|++++....- .+...|+.+ ..+|.++++|+.||+|.|..+-+.+. .... .+ .
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~-~~~~-df---~ 112 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE-ITQY-DF---K 112 (846)
T ss_pred cceeeeccccceEEEEecCCcc---ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc-ceeE-ec---C
Confidence 6788888999999999875432 222233221 45799999999999999999988773 3333 22 2
Q ss_pred CCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCcceE-EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-C
Q 000697 1227 ERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-E 1301 (1348)
Q Consensus 1227 ~~I~sl~~sp~---~~g~~LaSgs~DG~I~IWDlr~~~~~v~-t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~ 1301 (1348)
.++.+|+++|+ ...+.+++|+..| +.++.-+-.+.... ......|+|.++.|. |.++|-++.+| |+|||+ .
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccc
Confidence 68999999998 3567899999999 87876553322211 355567899999995 67898888777 899994 5
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+..+..++..+. .......-..+.|.++.++++ | +..+|+|
T Consensus 189 ~~~l~~i~~p~~--~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i 229 (846)
T KOG2066|consen 189 RQRLTNIPPPSQ--SVRPELFPPHLHWQDEDRLVI-G-WGDSVKI 229 (846)
T ss_pred cceeeccCCCCC--CCCcccCCCceEecCCCeEEE-e-cCCeEEE
Confidence 666666665221 111112234577776654443 3 3334554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.01 Score=76.83 Aligned_cols=200 Identities=18% Similarity=0.142 Sum_probs=130.5
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC-
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR- 1210 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr- 1210 (1348)
..|.+ +.|..+...++++...|.|.+-|..+.. ..+-+.-+..|.++ .+++++..++..+.++++.+-+-.
T Consensus 69 ~~i~s----~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg~vd~GI~aa-swS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVS----VQFLADTNSICVITALGDIILVDPETLE---LEIVGNVDNGISAA-SWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEE----EEEecccceEEEEecCCcEEEEcccccc---eeeeeeccCceEEE-eecCCCcEEEEEeCCcEEEEEeccc
Confidence 45555 8888899999999999999999877654 33334444458888 788999999988888887664331
Q ss_pred ---CCCee----------e--------EeecCCCC------------------CCCCeEEEEEecCCCCCEEEEEE----
Q 000697 1211 ---TPDML----------V--------CSTRPHTQ------------------QVERVVGISFQPGLDPAKIVSAS---- 1247 (1348)
Q Consensus 1211 ---~~~~~----------v--------~~~~~~~~------------------h~~~I~sl~~sp~~~g~~LaSgs---- 1247 (1348)
..+.. + ..+++..| ..+.=++|+|--+ |.++++..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESE 218 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEecc
Confidence 11100 0 01110000 1112345888776 88988732
Q ss_pred -CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEcCCceEEEEeccCCcccccccCCe
Q 000697 1248 -QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1248 -~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg---S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
....|++||-. + ..-.+-....+.-.+++|-|.|..+|+- ++|+.|.+|.-+|-.-..+.. . +. .....|
T Consensus 219 ~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~--~p-~de~~v 292 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-P--FP-LDEKEV 292 (1265)
T ss_pred CCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-C--Cc-ccccch
Confidence 23689999977 3 2222222234445689999999999885 456689999988866444432 1 11 122349
Q ss_pred EEEEEeCCCCEEEE---EECCCeEEEc
Q 000697 1324 NCLTFHPYQVLLAA---GSADACVSIH 1347 (1348)
Q Consensus 1324 tslafspdg~~Lat---gs~Dg~I~IW 1347 (1348)
..++|+.++..||+ ......|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999998 4445559988
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.073 Score=61.18 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred CeEEEEEcCCC-CEEEEEECCCc-EEEEECCCCcEEEEeeCCCCCCCCe--EEEEEEeeCCCCEEEEEeC-----CCeEE
Q 000697 1037 GTKTALLQPFS-PIVVAADENER-IKIWNYEEDTLLNSFDNHDFPDKGI--SKLCLVNELDVSLLLVASC-----NGNIR 1107 (1348)
Q Consensus 1037 ~I~sl~fspdg-~~Latgs~dg~-I~VWd~~t~~~l~~~~~h~~~~~~I--tsL~f~ns~d~~~L~tgs~-----DG~Ir 1107 (1348)
....++.+|.. ..++.+-.-|+ ..+||..+++....+.... +.- -.-.| ++||++|+|.-. .|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~---gRHFyGHg~f--s~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP---GRHFYGHGVF--SPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC---CCEEecCEEE--cCCCCEEEEeccccCCCcEEEE
Confidence 45678889954 46666766665 6789999998887665432 111 13367 789999999744 48999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-EC------CC-----------eEEEEECCCCce
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GE------VS-----------SIMLWDLEKEQQ 1169 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~------Dg-----------~IrVWDl~t~~~ 1169 (1348)
|||... ..+.+ ..+..+.-.-.. +.+.+++..|+++ |. .| ++...|..+++
T Consensus 81 Vyd~~~---~~~ri---~E~~s~GIGPHe----l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~- 149 (305)
T PF07433_consen 81 VYDAAR---GYRRI---GEFPSHGIGPHE----LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA- 149 (305)
T ss_pred EEECcC---CcEEE---eEecCCCcChhh----EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-
Confidence 999963 22223 223434333344 6778888888887 21 12 34455677777
Q ss_pred eeeeecC----CCCCCeEEEEEecCCCCEEEEEeCCCe-------EEEEECCCCCeeeEeecC----CCCCCCCeEEEEE
Q 000697 1170 MVNPIPS----SSDCSISALTASQVHGGQLAAGFVDGS-------VRLYDVRTPDMLVCSTRP----HTQQVERVVGISF 1234 (1348)
Q Consensus 1170 ~v~~l~~----~~~~~VtsL~~~s~dg~~LvsGs~DG~-------VrvwDlr~~~~~v~~~~~----~~~h~~~I~sl~~ 1234 (1348)
.+..... |..+ |..| ....+|..++..-..|. |-+++.... ...+.. ...-...+-+|++
T Consensus 150 ll~q~~Lp~~~~~lS-iRHL-a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 150 LLEQVELPPDLHQLS-IRHL-AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred eeeeeecCccccccc-eeeE-EecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEE
Confidence 5555322 3344 8888 55666666555443332 333333221 111110 0112368999999
Q ss_pred ecCCCCCEE-EEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1235 QPGLDPAKI-VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1235 sp~~~g~~L-aSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
+++ +..+ +|+=..|.+.+||..++ ..+....- ..+..++..+++ ++++.+ .|.+
T Consensus 225 ~~~--g~~ia~tsPrGg~~~~~d~~tg-~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 225 DRD--GRLIAVTSPRGGRVAVWDAATG-RLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eCC--CCEEEEECCCCCEEEEEECCCC-CEeecccc--CceeeeeecCCc-eEEeCC-CccE
Confidence 998 7666 55557788999999988 56555442 346777777776 555543 3443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.086 Score=57.98 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=61.6
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
-.|....+.+|.+-+.- -|++++.|...|.+++.+..+|+....|..-. .|.+-+-. ..++.++..|+.|++..
T Consensus 45 ~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~~-d~~~glIycgshd~~~y 118 (354)
T KOG4649|consen 45 LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVKVRAQC-DFDGGLIYCGSHDGNFY 118 (354)
T ss_pred EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh----hhccceEE-cCCCceEEEecCCCcEE
Confidence 35776666666655544 57789999999999999999998888887655 33333322 56999999999999999
Q ss_pred EEeccC
Q 000697 1108 IWKDYD 1113 (1348)
Q Consensus 1108 IWdl~~ 1113 (1348)
.-|.++
T Consensus 119 alD~~~ 124 (354)
T KOG4649|consen 119 ALDPKT 124 (354)
T ss_pred Eecccc
Confidence 999866
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=62.18 Aligned_cols=246 Identities=12% Similarity=0.179 Sum_probs=132.2
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECC----------C-cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADEN----------E-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~d----------g-~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~ 1098 (1348)
|+.+....=..++..|.|..+|...++ . .|+||+.. |+.+.++.-.. +.|.++.| .. ...|+
T Consensus 23 W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~w--t~-~e~Lv 95 (410)
T PF04841_consen 23 WSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGW--TD-DEELV 95 (410)
T ss_pred CCccccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEE--CC-CCeEE
Confidence 655543333456677777777776543 2 48999876 77887766554 68999999 43 56677
Q ss_pred EEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE-ECCCCceeee---ee
Q 000697 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW-DLEKEQQMVN---PI 1174 (1348)
Q Consensus 1099 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW-Dl~t~~~~v~---~l 1174 (1348)
+-..||.+++||+.... ...+. ... ....|........+..++|.++..+ ++.+.+. +..... ..+ .+
T Consensus 96 vV~~dG~v~vy~~~G~~-~fsl~---~~i--~~~~v~e~~i~~~~~~~~GivvLt~-~~~~~~v~n~~~~~-~~~~~~~~ 167 (410)
T PF04841_consen 96 VVQSDGTVRVYDLFGEF-QFSLG---EEI--EEEKVLECRIFAIWFYKNGIVVLTG-NNRFYVVNNIDEPV-KLRRLPEI 167 (410)
T ss_pred EEEcCCEEEEEeCCCce-eechh---hhc--cccCcccccccccccCCCCEEEECC-CCeEEEEeCccccc-hhhccccC
Confidence 77899999999985311 00000 000 1111111000011222344444433 3444333 322221 111 11
Q ss_pred cCCC-----CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1175 PSSS-----DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1175 ~~~~-----~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
.... ......+.....+....+....++.+.+.|-...+. + ...+++..++++|+ |++++.-..+
T Consensus 168 p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i----~~~~~i~~iavSpn--g~~iAl~t~~ 237 (410)
T PF04841_consen 168 PGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----I----DSDGPIIKIAVSPN--GKFIALFTDS 237 (410)
T ss_pred CCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----c----cCCCCeEEEEECCC--CCEEEEEECC
Confidence 1110 000111112333445555555566666554333221 1 11368999999999 9999999999
Q ss_pred CcEEEEEcCCCCcceEEEecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h-~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
|.+.+.+..-. +.+..+... ......+.|.-+..+++.- ...|.+....+.
T Consensus 238 g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~ 289 (410)
T PF04841_consen 238 GNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGD 289 (410)
T ss_pred CCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCC
Confidence 99999987655 555555543 4466788887665444433 334555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.03 Score=64.27 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=124.6
Q ss_pred EEEecCCCeEEEE-ECCC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-----CCeEEEEECCCCC
Q 000697 1141 VDWQQQSGYLYAS-GEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-----DGSVRLYDVRTPD 1213 (1348)
Q Consensus 1141 v~ws~~~~~Ll~g-g~Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-----DG~VrvwDlr~~~ 1213 (1348)
++.+|.....++- -.-| ...+||..+++ ....+....+.-...=..++++|++|++.-. .|.|-|||.+..-
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~-~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQ-LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 5566755544444 3444 47899999998 7777665444323333468899999998643 5899999999433
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------------------CCcEEEEEcCCCCcceEEEe----cCC
Q 000697 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------------------AGDIQFLDIRNHKDAYLTID----AHR 1271 (1348)
Q Consensus 1214 ~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~------------------DG~I~IWDlr~~~~~v~t~~----~h~ 1271 (1348)
..+..+ ..|.-.-..+.+.|+ |+.|+++.. +-.+.+.|.+++ +.+.... .|+
T Consensus 89 ~ri~E~---~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 89 RRIGEF---PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQ 162 (305)
T ss_pred EEEeEe---cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccc
Confidence 234433 333345566778888 777766532 233555666666 5555533 367
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCc-------EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCe
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQL-------IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1343 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~-------I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~ 1343 (1348)
..|+.+++.++|.+++..-..|. |-+++. ++.+..+.. .......-.+.+-+++++.++.++++.+- .|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 78999999999887776644432 333332 222333332 22111233468999999999988766655 788
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
+.+||
T Consensus 241 ~~~~d 245 (305)
T PF07433_consen 241 VAVWD 245 (305)
T ss_pred EEEEE
Confidence 99985
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0078 Score=69.50 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=128.7
Q ss_pred hhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHH
Q 000697 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1348)
Q Consensus 503 fpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 582 (1348)
+|-+.--.++...|-|..+.+-+.-.+....+++ ++++-+|..-.+.+|+..+ +++|..+|.+++...+|+|..|..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~~l~~~~--~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLGYLENSD--AELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHHHhcCCc--HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444444455666778888877777666665 7889999999999888776 499999999999999999999999
Q ss_pred HHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccC--CCHHHHHHHHHHH
Q 000697 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSL 660 (1348)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sP~VRaa~v~aL 660 (1348)
.++.++..+++..|.. +..-.+|.-+.++++.|+.+++.+.....+.+-...|...+++ .++..+.=+++.+
T Consensus 162 v~E~~~L~~Ll~~ls~------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILSS------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHcc------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999984 5566789999999999999999999988887778789999987 6777777788889
Q ss_pred Hhhccc
Q 000697 661 GTLLDI 666 (1348)
Q Consensus 661 ~~~i~~ 666 (1348)
+.++..
T Consensus 236 ~~Ll~~ 241 (342)
T KOG2160|consen 236 SLLLQE 241 (342)
T ss_pred HHHHHh
Confidence 988843
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00011 Score=88.19 Aligned_cols=249 Identities=14% Similarity=0.189 Sum_probs=145.2
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCcEE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----CCCeEE
Q 000697 1036 KGTKTALLQP--FSPIVVAADENERIKIWNYEEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVAS----CNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fsp--dg~~Latgs~dg~I~VWd~~t~~~l--~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----~DG~Ir 1107 (1348)
..+.|+++.- +..++++|..+|.|.+-......-- .....+. ..+++++|. +-|.+.|++|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---r~Ct~lAwn-eLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---RPCTSLAWN-ELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---ccccccccc-cccHHHHHhhhhhhcccCCcc
Confidence 4566776543 3358899999999999876533211 1223344 688999994 56778888874 356799
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
|||+...-..+. ..+.-..+...... +++|..+...+++|...+.+.++|++........+.. . .|..++.
T Consensus 133 Iwdi~s~ltvPk--e~~~fs~~~l~gqn----s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLTVPK--ESPLFSSSTLDGQN----SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITV 203 (783)
T ss_pred ceecccccCCCc--cccccccccccCcc----ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hccccee
Confidence 999976211111 11111111222233 3889878888888888889999999843312223322 1 1455533
Q ss_pred ecCCCCEEEEEeCCCeEEEEE-CCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCC---
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYD-VRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHK--- 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwD-lr~~~~~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~--- 1261 (1348)
.+-.++++++-. ||.|-+|| .+.-+..+..+...+ .....+..++|.|. ....+++.+. .++|+++|++...
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-rtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-RTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-CcchhhhhccCcceEEEecccccCCcc
Confidence 333677777654 99999999 555443333331111 11235899999998 3445555554 5789999987432
Q ss_pred ----cceEE------EecCC--CCeEEEEEeCCCC--EEEEEeCCCcEEEEE
Q 000697 1262 ----DAYLT------IDAHR--GSLSALAVHRHAP--IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ----~~v~t------~~~h~--~~VtsLa~spdg~--~LasgS~Dg~I~Vwd 1299 (1348)
..... ++... ..|.++.||+..+ ....+..+-.++-++
T Consensus 282 s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~ 333 (783)
T KOG1008|consen 282 SANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFS 333 (783)
T ss_pred cccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhcc
Confidence 11111 11112 4688888887652 333443333444333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0059 Score=75.81 Aligned_cols=145 Identities=15% Similarity=0.264 Sum_probs=100.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEeCCCeEEEEeccCCCCcee
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASCNGNIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~DG~IrIWdl~~~~~~~~ 1119 (1348)
.+|.++++|+.||+|.|-.+.+.+...++.-+. ++.++++ +|+ .+.+++||..| +.++.-.-.+.+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r----piksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR----PIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS 153 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecCC----cceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence 368999999999999999998888777776665 8899999 555 57899999998 66664321111111
Q ss_pred EEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-----CeEEEEEecCCCCE
Q 000697 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-----SISALTASQVHGGQ 1194 (1348)
Q Consensus 1120 lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~-----~VtsL~~~s~dg~~ 1194 (1348)
. .+....+.|.+ +.|. |..|+-+.++| |+|||+.+++ .+..++..+.. .-..+ .|. +.+.
T Consensus 154 v-----~l~~~eG~I~~----i~W~--g~lIAWand~G-v~vyd~~~~~-~l~~i~~p~~~~R~e~fpphl-~W~-~~~~ 218 (846)
T KOG2066|consen 154 V-----VLSEGEGPIHS----IKWR--GNLIAWANDDG-VKVYDTPTRQ-RLTNIPPPSQSVRPELFPPHL-HWQ-DEDR 218 (846)
T ss_pred e-----eeecCccceEE----EEec--CcEEEEecCCC-cEEEeccccc-eeeccCCCCCCCCcccCCCce-Eec-CCCe
Confidence 1 24455666776 8886 66777777777 9999999988 77766644332 11234 343 3556
Q ss_pred EEEEeCCCeEEEEECCCC
Q 000697 1195 LAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~ 1212 (1348)
++.|=.| +|+|..++.+
T Consensus 219 LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEecCC-eEEEEEEecc
Confidence 7777655 7889888833
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.069 Score=60.33 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=117.9
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCe
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~ 1203 (1348)
+.+.+....+.+ ++|+++++.|++.. ..+.|..++.. ++ .++.+........-.|++ -.++.++++.-.++.
T Consensus 15 ~~l~g~~~e~SG----LTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLPGILDELSG----LTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQR 87 (248)
T ss_dssp EE-TT--S-EEE----EEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTE
T ss_pred eECCCccCCccc----cEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCc
Confidence 345666666777 99999988887775 56888888864 56 677776543333677744 344555554445899
Q ss_pred EEEEECCCCCe-----eeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC--CCcceEEEe------
Q 000697 1204 VRLYDVRTPDM-----LVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN--HKDAYLTID------ 1268 (1348)
Q Consensus 1204 VrvwDlr~~~~-----~v~~~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~--~~~~v~t~~------ 1268 (1348)
+.++++..... .+..+. ....++..+-.++|++. ++.|+.+-...-..+|.++. ....+....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 99999843221 111121 12234567999999998 66666676666677777764 111221111
Q ss_pred --cCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCceEEEEeccCCcccc--cccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1269 --AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1269 --~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~--~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
..-..+++++++|.. .+++-...++.|..+|.+|+.+..+.- ..++.+ .....--+|+|.++|.+.++ +.-+.
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L-~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl 243 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSL-DRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL 243 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEe-CCcccCcccccCCccEEEECCCCCEEEE-cCCce
Confidence 123468999999974 566777778889999999998888776 443322 33345789999999865554 46666
Q ss_pred EEEc
Q 000697 1344 VSIH 1347 (1348)
Q Consensus 1344 I~IW 1347 (1348)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0071 Score=69.76 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.++..|..++|+|+.. ++..++-+..|+|.|+++...+..+..+. .+++++|. -.+.++++.|-.+|.|.|||+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~wSC~wD-lde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QIWSCCWD-LDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cceeeeec-cCCcceeEEeccCceEEEEEc
Confidence 3456799999999988 78889999999999999999999888887 89999994 345678999999999999999
Q ss_pred cCC
Q 000697 1112 YDQ 1114 (1348)
Q Consensus 1112 ~~~ 1114 (1348)
...
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 763
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.11 Score=65.21 Aligned_cols=277 Identities=12% Similarity=0.026 Sum_probs=145.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCC--CC-CCe--EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEE
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDF--PD-KGI--SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~--~~-~~I--tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv 1121 (1348)
+..+.+++.++.|.-.|.++|+.+.++..... .. ..+ ..+.. .++..++.++.+|.|.-+|..+ ++..-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~T--G~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAET--GKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCC--CCEeee
Confidence 45677777789999999999998887765431 00 001 11122 1236888899999999999876 443322
Q ss_pred eeeecccCC---CCcccccceEEEEecCCCeEEEEE---------CCCeEEEEECCCCceeeeeecCCCC----------
Q 000697 1122 TAFSSIQGH---KPGVRCSNVVVDWQQQSGYLYASG---------EVSSIMLWDLEKEQQMVNPIPSSSD---------- 1179 (1348)
Q Consensus 1122 s~~~~l~~h---~~~V~si~~~v~ws~~~~~Ll~gg---------~Dg~IrVWDl~t~~~~v~~l~~~~~---------- 1179 (1348)
.....+ ...+.+.. .. .++.+++++ .+|.|..+|..+++ .+-.+.....
T Consensus 136 ---~~~~~~~~~~~~i~ssP---~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 136 ---FGNNDQVPPGYTMTGAP---TI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred ---ecCCCCcCcceEecCCC---EE--ECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCCC
Confidence 111111 00122211 11 135666654 36789999999988 5555443211
Q ss_pred ---------CCeEEEEEecCCCCEEEEEeCCC------------------eEEEEECCCCCeeeEeecCCCCCCCC----
Q 000697 1180 ---------CSISALTASQVHGGQLAAGFVDG------------------SVRLYDVRTPDMLVCSTRPHTQQVER---- 1228 (1348)
Q Consensus 1180 ---------~~VtsL~~~s~dg~~LvsGs~DG------------------~VrvwDlr~~~~~v~~~~~~~~h~~~---- 1228 (1348)
..|.+-....+.+..++.++.|+ .|.-+|..+++..- ..+. ..|..+
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W-~~~~-~~~~~~~~~~ 284 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW-FYQT-TPHDLWDYDG 284 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE-EeeC-CCCCCccccc
Confidence 11111112334567788887776 79999999998433 2211 111110
Q ss_pred eEEEEEec---CCCCC---EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE-------------
Q 000697 1229 VVGISFQP---GLDPA---KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG------------- 1289 (1348)
Q Consensus 1229 I~sl~~sp---~~~g~---~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg------------- 1289 (1348)
.....+.+ . ++. .++.++.+|.+...|.+++ +.+-..... ...++.+| +.+++.+
T Consensus 285 ~s~p~~~~~~~~-~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~ 358 (488)
T cd00216 285 PNQPSLADIKPK-DGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKK 358 (488)
T ss_pred CCCCeEEecccc-CCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC-ceEEEccccccccCcccccC
Confidence 00011110 1 132 6788889999999999998 555444321 11223333 2222211
Q ss_pred ----eCCCcEEEEE-cCCceEEEEeccCCcc-cccccCCe--EEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1290 ----SAKQLIKVFS-LEGEQLGTIRYHHPSF-MAQKIGSV--NCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1290 ----S~Dg~I~Vwd-~~g~~l~~i~~~h~~f-~~~~~~~V--tslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+|.+.-.| .+|+.+-+... .... ......+. ..+. -.+..|++++.||.|+.+|
T Consensus 359 ~~~~~~~G~l~AlD~~tG~~~W~~~~-~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 359 RCKKPGKGGLAALDPKTGKVVWEKRE-GTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CCCCCCceEEEEEeCCCCcEeeEeeC-CccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 1346677777 45666655543 1000 00000011 1122 2456777777888887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.17 Score=55.76 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=92.8
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
..+++.|+..+.+.--|.++|+....-.-. .+|.+-+.. -|++++.|...|.+.+-+..+ |..-. .+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~w--~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQIW--NFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhhee--eeee
Confidence 447888999999999999999887653322 245554442 467899999999999999876 32211 1111
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrv 1206 (1348)
. ..|.+ ......+++.+..|+.|+..+..|.++.. ++...+..... ..--...+....+.++...|.|.-
T Consensus 92 ~----~~vk~---~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 92 L----ETVKV---RAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred h----hhhcc---ceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCce--eccceecCCCceEEEEeccceEEE
Confidence 1 22222 12334579999999999999999999998 88887654332 111123343334555555666655
Q ss_pred EECCCC
Q 000697 1207 YDVRTP 1212 (1348)
Q Consensus 1207 wDlr~~ 1212 (1348)
-..+..
T Consensus 162 vt~~~~ 167 (354)
T KOG4649|consen 162 VTKNPY 167 (354)
T ss_pred EccCCC
Confidence 555443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.037 Score=68.27 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...|.--+++..+++++.|++.|.+.+|+-..++....-.... ..++++..+ +.+..+++.|+..|.|.|+-+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~- 107 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNK- 107 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc---cceEEEEEe-cchhHhhhhhcCCceEEeehhhc-
Confidence 3456666788889999999999999999988665433222122 355555544 67888899999999999998865
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc---eeeeeecCCCCCCeEEEEEecCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.....+.--...-..|...|++ ++|++++..+++|...|+|..-.+.... ...+.+-. .+++|..+... +
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTa----l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~--q 180 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTA----LEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL--Q 180 (726)
T ss_pred cCCCcceeeccccccCCceEEE----EEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc--c
Confidence 2222222111111235666776 9999999999999999999888776621 01222222 23447777333 3
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~ 1211 (1348)
+.+|++...- -.+++...
T Consensus 181 ~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 181 SYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred ceehHhhhhh--hheeecch
Confidence 4555544432 23455543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=61.61 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=64.1
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcC
Q 000697 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1348)
Q Consensus 590 ~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1348)
+.+++.|.+ +++|.+|..++.+||++... .+...|..+++|++|.||.+++.+||.+=
T Consensus 2 ~~L~~~l~~------~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 2 PALLQLLQN------DPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHT------SSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 467777732 89999999999999977532 23457888999999999999999999872
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHhhhc-cCCChhhHHHHHHHHH
Q 000697 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVV-SDGSPLVRAEVAVALA 717 (1348)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~-~D~sp~VR~e~~~~ls 717 (1348)
.......|..+. +|....||.+++.+|+
T Consensus 60 --------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 112234455544 4667889999998875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.17 Score=58.94 Aligned_cols=262 Identities=15% Similarity=0.178 Sum_probs=155.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----------CCCeEEEEeccCCCCceeEEeeeec
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----------~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+.+.|+|.++++.+..+...- .-.+.. +++++.+++++ ..-.|.+||..+..-..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----- 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----- 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----
Confidence 479999999999888877644 233455 78999888754 23469999997743333333
Q ss_pred ccCC-CC-cccccceEEEEecCCCeEEEEE--CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1127 IQGH-KP-GVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1127 l~~h-~~-~V~si~~~v~ws~~~~~Ll~gg--~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
+... .. .+.... ....+.+++++++.- -...|-|.|+...+ .+.++... + ...+ ++..++-|.+-|.||
T Consensus 85 iP~k~R~~~~~~~~-~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~P--G-C~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 85 IPPKPRAQVVPYKN-MFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTP--G-CWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp ETTS-B--BS--GG-GEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGT--S-EEEE--EEEETTEEEEEETTS
T ss_pred cCCcchheeccccc-ceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCC--C-EEEE--EecCCCceEEEecCC
Confidence 2221 11 111111 267788888888873 45679999999998 78777652 2 2233 344456788999999
Q ss_pred eEEEEECCC-CCeeeEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecC---------
Q 000697 1203 SVRLYDVRT-PDMLVCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH--------- 1270 (1348)
Q Consensus 1203 ~VrvwDlr~-~~~~v~~~~~~~~h~~~I~-sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h--------- 1270 (1348)
++.-..+.. ++...+..+.+.....++. .-.+... +..++--+.+|.|+--|+.... +....+..-
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 999998883 4422221112211122232 3334444 5555557889999998888653 122223211
Q ss_pred -CCCeEEEEEeCCCCEEEEE---eC-----CC--cEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCC-EEEE
Q 000697 1271 -RGSLSALAVHRHAPIIASG---SA-----KQ--LIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAA 1337 (1348)
Q Consensus 1271 -~~~VtsLa~spdg~~Lasg---S~-----Dg--~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~-~Lat 1337 (1348)
.+.-.-+++|+....|.+- +. |+ .|-++| .+++.+.++.. . ..+.+++.+.+.+ +|++
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~--------~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-E--------HPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-E--------EEESEEEEESSSS-EEEE
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-C--------CccceEEEccCCCcEEEE
Confidence 1233457888765544332 11 22 366667 56788888875 1 3577999998875 6655
Q ss_pred EE-CCCeEEEcC
Q 000697 1338 GS-ADACVSIHS 1348 (1348)
Q Consensus 1338 gs-~Dg~I~IWd 1348 (1348)
.+ .++.+.|||
T Consensus 307 ~~~~~~~l~v~D 318 (342)
T PF06433_consen 307 LSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEe
Confidence 54 478999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.24 Score=60.70 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1225 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1225 h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
..+.|.+++++|+ ...++.|+.||.|.+||...+ +.......-..+.++|||+|.++++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPS--EDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcc--cceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4578999999999 999999999999999998855 22232344567899999999999999999999999953
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.082 Score=64.82 Aligned_cols=216 Identities=16% Similarity=0.140 Sum_probs=115.9
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
....+.+ +|+|+++++ +.||...|+.... .+-. ....+....|.. .+.+++-...+.|.|
T Consensus 34 ~p~~ls~--npngr~v~V-~g~geY~iyt~~~----~r~k------------~~G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 34 YPQSLSH--NPNGRFVLV-CGDGEYEIYTALA----WRNK------------AFGSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp --SEEEE---TTSSEEEE-EETTEEEEEETTT----TEEE------------EEEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCeeEEE--CCCCCEEEE-EcCCEEEEEEccC----Cccc------------ccCceeEEEEec-CccEEEEECCCeEEE
Confidence 4678888 789999998 5567777776322 1101 112223478987 566777777888999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
+.--++. ....+... ..+..| +. |.+|...+. +.|.+||..+++ .++.+.. ..|..+.|+++ |.
T Consensus 94 ~kn~~~~-~~k~i~~~--~~~~~I-f~---G~LL~~~~~-~~i~~yDw~~~~-~i~~i~v-----~~vk~V~Ws~~--g~ 157 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLP--FSVEKI-FG---GNLLGVKSS-DFICFYDWETGK-LIRRIDV-----SAVKYVIWSDD--GE 157 (443)
T ss_dssp EETTEE--TT-----S--S-EEEE-E----SSSEEEEET-TEEEEE-TTT---EEEEESS------E-EEEEE-TT--SS
T ss_pred EEcCccc-cceEEcCC--cccceE-Ec---CcEEEEECC-CCEEEEEhhHcc-eeeEEec-----CCCcEEEEECC--CC
Confidence 7433333 23344432 126667 33 777766654 489999999998 6666632 34899999998 99
Q ss_pred EEEEEECCCcEEEEEcCCC----------CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEecc
Q 000697 1242 KIVSASQAGDIQFLDIRNH----------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYH 1311 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~----------~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~ 1311 (1348)
+++..+.+ .+.|++.... ...+..+..-...|.+..|..+ .++-.+.. +++- +-+.....+..
T Consensus 158 ~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~- 230 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH- 230 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-
T ss_pred EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE-
Confidence 99888765 6777775521 0144444443567888899876 44433333 6665 33344444443
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-+ .++.=+...+....+.....|+.|..+
T Consensus 231 ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 231 LD-------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -S-------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred cC-------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 22 456667778877788888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=73.97 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=96.5
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhH
Q 000697 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1348)
Q Consensus 502 ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~ 581 (1348)
.||.|+|+++++..|+|.|.-.-|.......|. .. ++ ..+.|.+=|++++ |..|+++.=.|+.|- .
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe-la-lL---aINtl~KDl~d~N--p~IRaLALRtLs~Ir-------~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE-KA-LL---AVNTFLQDTTNSS--PVVRALAVRTMMCIR-------V 134 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH-HH-HH---HHHHHHHHcCCCC--HHHHHHHHHHHHcCC-------c
Confidence 499999999999999998844444444332322 11 11 1345566565554 688888877776663 1
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
.-+-..+...+.+.|. |++|.||..+++|+.+++..+++ ...+.+..+.|..+|+|.+|+|.+.++.+|.
T Consensus 135 ~~i~e~l~~~lkk~L~-------D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVA-------DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred HHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 1122233444455566 88999999999999999987664 2234456667888999999999999999999
Q ss_pred hhcc
Q 000697 662 TLLD 665 (1348)
Q Consensus 662 ~~i~ 665 (1348)
.+..
T Consensus 205 eI~~ 208 (746)
T PTZ00429 205 EVND 208 (746)
T ss_pred HHHH
Confidence 8863
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.11 Score=63.00 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=130.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-------------------------EeeCC---------------
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN-------------------------SFDNH--------------- 1076 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~-------------------------~~~~h--------------- 1076 (1348)
.|+.+.|.++..-|++|...|.|.||.+...+.-. .+..-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875432111 00000
Q ss_pred CCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccC------CCCcccccceEE-EEecCC--
Q 000697 1077 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVVV-DWQQQS-- 1147 (1348)
Q Consensus 1077 ~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~------h~~~V~si~~~v-~ws~~~-- 1147 (1348)
+...+.|++++. .|-.+++.|..+|.+.|.|++. +.++.. ..+.. ....++++.+.+ .+..|+
T Consensus 83 ~~~~g~vtal~~---S~iGFvaigy~~G~l~viD~RG----PavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKN---SDIGFVAIGYESGSLVVIDLRG----PAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTT----TEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEec---CCCcEEEEEecCCcEEEEECCC----CeEEee-ccccccccccccccCeeEEEEEEEecCCCccc
Confidence 001368999987 3778999999999999999944 222211 12222 122233322211 122222
Q ss_pred -CeEEEEECCCeEEEEECCC---Cc---eeeeeecCCCCCCeEEEEEecCC-C-------------------CEEEEEeC
Q 000697 1148 -GYLYASGEVSSIMLWDLEK---EQ---QMVNPIPSSSDCSISALTASQVH-G-------------------GQLAAGFV 1200 (1348)
Q Consensus 1148 -~~Ll~gg~Dg~IrVWDl~t---~~---~~v~~l~~~~~~~VtsL~~~s~d-g-------------------~~LvsGs~ 1200 (1348)
-.+++|.+.|.+.+|.+.- +. +..... ...+.+|..+..++.+ | +-++....
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688889999999997652 11 011111 1233446666555322 1 13444455
Q ss_pred CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec---CCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC----CC
Q 000697 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP---GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR----GS 1273 (1348)
Q Consensus 1201 DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp---~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~----~~ 1273 (1348)
+..+|++..-+.+...+.++. ......+.+-+ ...+..|++-..+|.|++|.+... +.+....... ..
T Consensus 234 e~~irv~~~~~~k~~~K~~~~----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDD----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRR 308 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH
T ss_pred ccceEEEeCCCCcccceeecc----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCcccccc
Confidence 788999999887755554421 12223334421 002778999999999999999987 5666665432 23
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+....++++|.+++-.+. ..+.++.
T Consensus 309 ~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 309 LSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp HTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred ccccEECCCCCEEEEeCc-ccEEEEE
Confidence 445677888887766543 2344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.16 Score=60.89 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=140.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC------C--------CCCeEEEEEEeeCCCCEEEEEe
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF------P--------DKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~------~--------~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
..+....|+|+|+.++... ++.|.+++..+++..+.-..... + -+.-.++-| +||+++|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEE
Confidence 5688999999999999887 78999999887744332111110 0 012345666 89999888765
Q ss_pred -CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeec---C
Q 000697 1102 -CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIP---S 1176 (1348)
Q Consensus 1102 -~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v-~~l~---~ 1176 (1348)
++..|+.+.+........ .-..+.. +.+-..|.... .-.+.|+|+.+++ .. .... .
T Consensus 120 ~d~~~v~~~~~~~~~~~~~----------~yp~~~~----~~YPk~G~~np----~v~l~v~~~~~~~-~~~~~~~~~~~ 180 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS----------QYPEVES----IRYPKAGDPNP----RVSLFVVDLASGK-TTELDPPNSLN 180 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE----------SS-EEEE----EE--BTTS-------EEEEEEEESSSTC-CCEE---HHHH
T ss_pred ECCcCCceEEeeccCCccc----------cCCcccc----cccCCCCCcCC----ceEEEEEECCCCc-EEEeeeccccC
Confidence 345565555422111100 0001111 22211121111 1136678888776 32 1222 1
Q ss_pred CCCCCeEEEEEecCCCCEEEEE--eCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe-cCCCCCEEEEEECCC
Q 000697 1177 SSDCSISALTASQVHGGQLAAG--FVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ-PGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsG--s~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s-p~~~g~~LaSgs~DG 1250 (1348)
..+..+..+. +.++++.|+.. ..+ -.+.++|..++...........+--..-....+. ++ +..++.....+|
T Consensus 181 ~~~~yl~~v~-W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~-~~~~l~~s~~~G 258 (353)
T PF00930_consen 181 PQDYYLTRVG-WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD-GNEFLWISERDG 258 (353)
T ss_dssp TSSEEEEEEE-EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT-SSEEEEEEETTS
T ss_pred CCccCcccce-ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC-CCEEEEEEEcCC
Confidence 2244477774 45566634333 222 2467778877653322221222111222355554 55 466666777888
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEE-EEEeCCCCE-EEEEeCC----CcEEEEEcC-CceEEEEeccCCcccccccCCe
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRHAPI-IASGSAK----QLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~Vts-La~spdg~~-LasgS~D----g~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
.-+||-+...+...+.+....-.|+. +.+++++.. ..++..+ ..+..-+++ +..+..+.. .. +.-
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~-------~~~ 330 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-ED-------GDH 330 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-TS-------STT
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CC-------CCc
Confidence 76666555433445555555666755 678887664 4455442 245455577 777777766 33 112
Q ss_pred EEEEEeCCCCEEEEEE
Q 000697 1324 NCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1324 tslafspdg~~Latgs 1339 (1348)
..+.|+|++++++-..
T Consensus 331 ~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred eEEEECCCCCEEEEEE
Confidence 6899999999877554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.25 Score=61.82 Aligned_cols=237 Identities=14% Similarity=0.170 Sum_probs=132.5
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC--CCCeE-EEEEEeeCCCCEEEEEe---------CCCeEEEEeccCCC
Q 000697 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFP--DKGIS-KLCLVNELDVSLLLVAS---------CNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~--~~~It-sL~f~ns~d~~~L~tgs---------~DG~IrIWdl~~~~ 1115 (1348)
..+++++.+|.|.-+|.++|+.+..+...... ...+. +..+ .+..++.++ .+|.|..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVET-- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCC--
Confidence 67888888999999999999999887755410 00011 2222 224555554 357788888766
Q ss_pred CceeEEeeeecccC----------------C-CCcccccceEEEEecCCCeEEEEECCC------------------eEE
Q 000697 1116 DKQKLVTAFSSIQG----------------H-KPGVRCSNVVVDWQQQSGYLYASGEVS------------------SIM 1160 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~----------------h-~~~V~si~~~v~ws~~~~~Ll~gg~Dg------------------~Ir 1160 (1348)
++..-.. ..... + ...+.+ .....+.++.+++++.++ .|.
T Consensus 185 G~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vw~---~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 185 GKLLWRF--YTTEPDPNAFPTWGPDRQMWGPGGGTSWA---SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred CceeeEe--eccCCCcCCCCCCCCCcceecCCCCCccC---CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 4333221 11000 0 011111 134445578888887554 799
Q ss_pred EEECCCCceeeeeecCCCCC-----CeE--EEEE-ecCCCC---EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1161 LWDLEKEQQMVNPIPSSSDC-----SIS--ALTA-SQVHGG---QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~-----~Vt--sL~~-~s~dg~---~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
-+|..+++ .+-.++..... ... .+.- ...++. .+++++.+|.+..+|.++++..-. .+.. .
T Consensus 260 Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~-~~~~------~ 331 (488)
T cd00216 260 ALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA-RPEV------E 331 (488)
T ss_pred EEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE-eEee------c
Confidence 99999998 66554421110 000 1100 012333 678899999999999999984332 2110 0
Q ss_pred EEEEEecCCCCCEEEEE------------------ECCCcEEEEEcCCCCcceEEEecCC--------CCe--EEEEEeC
Q 000697 1230 VGISFQPGLDPAKIVSA------------------SQAGDIQFLDIRNHKDAYLTIDAHR--------GSL--SALAVHR 1281 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSg------------------s~DG~I~IWDlr~~~~~v~t~~~h~--------~~V--tsLa~sp 1281 (1348)
..+..+|+ .++.+ ..+|.+.-.|..++ +.+-+..... ... ..+..
T Consensus 332 ~~~~~~~~----~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~-- 404 (488)
T cd00216 332 QPMAYDPG----LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT-- 404 (488)
T ss_pred cccccCCc----eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe--
Confidence 11122221 22221 23567777888777 4443333220 111 11222
Q ss_pred CCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1282 HAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1282 dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
.+.+++.|+.||.|+.+| .+|+.+-+.+.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456888889999999999 67888887765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=71.73 Aligned_cols=255 Identities=16% Similarity=0.184 Sum_probs=175.0
Q ss_pred hHHHhcCCCCCCCCCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHH
Q 000697 446 FEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF 523 (1348)
Q Consensus 446 fe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rlral~--ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~F 523 (1348)
++.+|+.......-|...|++.+.|.++...+|.+. .|+|.+.-..-++.++.+.++++.++..|.++..+....++=
T Consensus 62 L~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~ 141 (503)
T PF10508_consen 62 LKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIK 141 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555333222234567778888888888877775 467888777777888889999999999999998888888999
Q ss_pred HHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCC
Q 000697 524 IWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603 (1348)
Q Consensus 524 Iwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~ 603 (1348)
++.++....+.. ..++..++...+.+.+...+.....|... ++..+...-+..-..|.+.|+++.++..|.
T Consensus 142 ~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e--l~v~i~~~S~~~~~~~~~sgll~~ll~eL~------ 212 (503)
T PF10508_consen 142 ALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYE--LLVEIASHSPEAAEAVVNSGLLDLLLKELD------ 212 (503)
T ss_pred HHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHH--HHHHHHhcCHHHHHHHHhccHHHHHHHHhc------
Confidence 999999865544 45778888777777776533223444333 466677888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHh--hcccCcCCCCCCCCCCCCC
Q 000697 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT--LLDIGFDSCRDGVEGDEEC 681 (1348)
Q Consensus 604 ~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~--~i~~~~~~~~~~~~~~~~~ 681 (1348)
+.+.+|+.-++=+|+.|.. .+++-..-.+.++..+|..++.+..-.-|-..++-.|. |.+.-. ..
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la-----------~~ 279 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA-----------RV 279 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH-----------hc
Confidence 7899999999999999999 56666666888999999999854422214444444444 332210 00
Q ss_pred chHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 682 DDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 682 ~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
...+....=..+...+..+.....+..+.-++-.++.+...
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 11122211223344555666667777776666666655433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=56.51 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 608 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 608 p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
|.||..++.+||.+.+..++.-.. .-..+...|..+|+|+++.||.+++.|||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987665544332 4455566888999999999999999999974
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.027 Score=65.14 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=98.5
Q ss_pred ccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVR 1205 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vr 1205 (1348)
+.++...|++ ++|+|... .+..++.+..|+|.|+++.. ++..+..+ ..+++++|.-.+.+++++|..+|.|.
T Consensus 189 lp~~g~~Ird----lafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 189 LPGEGSFIRD----LAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccccchhhhh----hccCccccceeeeeccCceEEEEecccce-eeeheecc--CCceeeeeccCCcceeEEeccCceEE
Confidence 5677778888 78888765 67777899999999999998 88888876 34899977777788999999999999
Q ss_pred EEECCCCCeeeEeecCCCCCCCCeEEEEEecC---C-CCCEEEEEECCCcEEEEEcCCCCc-ceEEEe-cCCCCeEEEEE
Q 000697 1206 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---L-DPAKIVSASQAGDIQFLDIRNHKD-AYLTID-AHRGSLSALAV 1279 (1348)
Q Consensus 1206 vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~---~-~g~~LaSgs~DG~I~IWDlr~~~~-~v~t~~-~h~~~VtsLa~ 1279 (1348)
+||+|..+.....+... -...+|..++.-+. + .|..++..+. ...+|++..... ...+.+ +..+...+++.
T Consensus 262 vyD~R~~~~~~~e~~a~-~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVAN-VTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhh-hccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99999877554433221 11234444443221 0 1444554443 356777654321 111111 22455566666
Q ss_pred eCCCC-EEEEE
Q 000697 1280 HRHAP-IIASG 1289 (1348)
Q Consensus 1280 spdg~-~Lasg 1289 (1348)
++-.+ +|++.
T Consensus 339 ~~~snh~l~ty 349 (463)
T KOG1645|consen 339 HGVSNHLLLTY 349 (463)
T ss_pred cCccceEEEEe
Confidence 66444 44444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.19 Score=59.34 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=128.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEeC----------CCeEEEEeccCC---CCce
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASC----------NGNIRIWKDYDQ---KDKQ 1118 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~----------DG~IrIWdl~~~---~~~~ 1118 (1348)
..|++.|..+.+.+.++.-.. ...+++++...-.+ ..++++|+. .|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 468899988888777665433 14677776643232 568887753 289999999763 1123
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsG 1198 (1348)
+++. -....++|.++ ..+ ++.++++. .+.|.+|++...+..+..-..+....++++... ++++++|
T Consensus 80 ~~i~----~~~~~g~V~ai---~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 80 KLIH----STEVKGPVTAI---CSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEE----EEEESS-EEEE---EEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEE
T ss_pred EEEE----EEeecCcceEh---hhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEE
Confidence 3331 12234556552 223 56655554 578999998876612222122223358888544 6799999
Q ss_pred eCCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC------Cc-ce-EEEec
Q 000697 1199 FVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH------KD-AY-LTIDA 1269 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~-~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~------~~-~v-~t~~~ 1269 (1348)
.....|.++..+.... ....-+. ....+++++.+-++ ++.++.+..+|.+.++..... +. .+ ....-
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f 221 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVD--EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF 221 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-S--SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE
T ss_pred EcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecC--CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE
Confidence 9999999885554322 2222211 22467999999877 569999999999999987631 11 12 12222
Q ss_pred C-CCCeEEE---EEeC--CC------CEEEEEeCCCcEEEE
Q 000697 1270 H-RGSLSAL---AVHR--HA------PIIASGSAKQLIKVF 1298 (1348)
Q Consensus 1270 h-~~~VtsL---a~sp--dg------~~LasgS~Dg~I~Vw 1298 (1348)
| ...|+++ .+.| .+ ..++.++.+|.|.+.
T Consensus 222 ~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 222 HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 2 4467777 4444 12 247778888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.13 Score=64.21 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=143.2
Q ss_pred EEEcCCCCEEEE-EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC----CeEEEEeccCCC
Q 000697 1041 ALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GNIRIWKDYDQK 1115 (1348)
Q Consensus 1041 l~fspdg~~Lat-gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~IrIWdl~~~~ 1115 (1348)
+=+.|||+.+.. .-..+.+.+.|.++.+...++.... ...-+.+ +++++++++.+.+ +++..-+..+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~--spdGk~afvTsyNsE~G~tl~em~a~e-- 269 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDT--DYDGKYAFSTCYNSEEGVTLAEMMAAE-- 269 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceE--CCCCCEEEEeccCcccCcceeeecccc--
Confidence 345677775543 3356778888988877777666543 3345566 6789988887632 2232222211
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC-----CceeeeeecCCCCCCeEEEEEecC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-----EQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t-----~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
.....+-.+.. + -++.+++++..+ .++.|.+.|..+ .. .+..+..... ...+ ..+|
T Consensus 270 ~d~~vvfni~~-------i------ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGKs--PHGV-~vSP 330 (635)
T PRK02888 270 RDWVVVFNIAR-------I------EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPKN--PHGV-NTSP 330 (635)
T ss_pred CceEEEEchHH-------H------HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCCC--ccce-EECC
Confidence 11111100000 0 122346666665 367899999998 34 6666665433 4667 6789
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCCe-----------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1191 HGGQLAAGF-VDGSVRLYDVRTPDM-----------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1191 dg~~LvsGs-~DG~VrvwDlr~~~~-----------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
+|+++++++ .+++|.|+|+.+.+. ++...+. ...-...+|.++ |+.+.|-..|..|..||+.
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~--G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGR--GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCC--CCEEEeEeecceeEEEehH
Confidence 999877655 489999999987552 1211111 123446678777 8889999999999999987
Q ss_pred CC---------CcceEEEecCCCCe-----EEEEEeCCCCEEEEEe---CCCc----------EEEEEcCCceEEEEecc
Q 000697 1259 NH---------KDAYLTIDAHRGSL-----SALAVHRHAPIIASGS---AKQL----------IKVFSLEGEQLGTIRYH 1311 (1348)
Q Consensus 1259 ~~---------~~~v~t~~~h~~~V-----tsLa~spdg~~LasgS---~Dg~----------I~Vwd~~g~~l~~i~~~ 1311 (1348)
.. ...+..+..|-.+- .+=.-.++|++|++.. .|+. -.+.|++|+.+.-+..
T Consensus 405 ~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d- 483 (635)
T PRK02888 405 AAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD- 483 (635)
T ss_pred HHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec-
Confidence 51 02334444343221 1122367888888864 3432 3467788887776655
Q ss_pred CCcc
Q 000697 1312 HPSF 1315 (1348)
Q Consensus 1312 h~~f 1315 (1348)
+..|
T Consensus 484 ~p~~ 487 (635)
T PRK02888 484 GPTF 487 (635)
T ss_pred CCCC
Confidence 4433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.14 Score=62.75 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=110.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..+..+.++|.|+++++++ +|...|+......... + +.-...+| .. .+.+++-...+.|.|++.....
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-~-------G~g~~~vw--~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-F-------GSGLSFVW--SS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-E-------EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-c-------CceeEEEE--ec-CccEEEEECCCeEEEEEcCccc
Confidence 4588999999999999966 8888888844333222 1 12235667 44 4557777778899997553311
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
.... +.- ...+.. + |. |..|.+. .++.|.+||+.+++ .+..+... +|..+ .|+++|+++
T Consensus 101 ~~k~-------i~~-~~~~~~----I-f~--G~LL~~~-~~~~i~~yDw~~~~-~i~~i~v~---~vk~V-~Ws~~g~~v 159 (443)
T PF04053_consen 101 VVKS-------IKL-PFSVEK----I-FG--GNLLGVK-SSDFICFYDWETGK-LIRRIDVS---AVKYV-IWSDDGELV 159 (443)
T ss_dssp TT-------------SS-EEE----E-E---SSSEEEE-ETTEEEEE-TTT---EEEEESS----E-EEE-EE-TTSSEE
T ss_pred cceE-------EcC-Ccccce----E-Ec--CcEEEEE-CCCCEEEEEhhHcc-eeeEEecC---CCcEE-EEECCCCEE
Confidence 1001 110 011222 1 11 4444444 45589999999999 89998853 27888 788899999
Q ss_pred EEEeCCCeEEEEECCCC----------CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1196 AAGFVDGSVRLYDVRTP----------DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~----------~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
+..+.+ .+.+++.... +........ -...|.+..|.. +.++-.+.. .++. +..+ ...
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~----d~fiYtT~~-~lkY--l~~G--e~~ 226 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVE----DCFIYTTSN-HLKY--LVNG--ETG 226 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEET----TEEEEE-TT-EEEE--EETT--EEE
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEc----CEEEEEcCC-eEEE--EEcC--Ccc
Confidence 988765 6777776543 001111111 125677777763 344444444 6665 3322 222
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
++..-..++.=+.+.+....+.....|+.|..+.+
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 33323445666666666566666666766666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.23 Score=56.17 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+..++|+|+.+ ++++.+..+.|..++.+ |+.++++.-.. .+...+|++. .++.++++.-.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g--~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG--FGDYEGITYL--GNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS---SSEEEEEE---STTEEEEEETTTTEEEEEEE---
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC--CCCceeEEEE--CCCEEEEEEcCCCcEEEEEEecc
Confidence 4599999999866 66667778888888864 88888876443 1468899994 56666666656899999988542
Q ss_pred CCceeE--Eeeee--cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC---Cceeee--e---ec--CCCCC
Q 000697 1115 KDKQKL--VTAFS--SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---EQQMVN--P---IP--SSSDC 1180 (1348)
Q Consensus 1115 ~~~~~l--vs~~~--~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t---~~~~v~--~---l~--~~~~~ 1180 (1348)
...... ...+. ....+.....+ ++|++.++.++++-...-..+|.+.. .. .+. . +. ...-.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EG----la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEG----LAYDPKTNRLFVAKERKPKRLYEVNGFPGGF-DLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EE----EEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEE----EEEcCCCCEEEEEeCCCChhhEEEccccCcc-ceeeccccccccccceec
Confidence 222111 11111 11123445566 99999999999987666666666553 11 111 1 11 11122
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC------CCCeEEEEEecCCCCCEEEEEECCCcE
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ------VERVVGISFQPGLDPAKIVSASQAGDI 1252 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h------~~~I~sl~~sp~~~g~~LaSgs~DG~I 1252 (1348)
.+.++++.+..+++++-...+..|..+| +.++ .+..+.-..+. -..--.|+|.++ |+..+++ +-+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvs-EpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD--GNLYIVS-EPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEE-TTTEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC--CCEEEEc-CCceE
Confidence 3778877777788888888899999999 4444 33333222111 135678999988 7665554 43333
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.081 Score=64.59 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=66.7
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1159 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1159 IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
-++|+..+.+ +++........+.|.+. ..+++...++.|+.||+|.+||...+..... ...-..+.++|+|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICC-ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEE-ecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCC
Confidence 3456655443 12222222234447887 7789999999999999999999987642211 11245789999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
|.++++|+..|.+.+||+.-.
T Consensus 311 --gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998744
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0038 Score=67.10 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHH
Q 000697 607 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 686 (1348)
Q Consensus 607 ~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~ 686 (1348)
+|.+|.-++++||-|+-.++.. -+.....+...|+|++|.||+.++..|++++...-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~-----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------------------ 57 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL-----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------------------ 57 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH-----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------------------
Confidence 4899999999999999887652 23344578899999999999999999999994321
Q ss_pred HHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 687 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 687 ~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
+..+..+...++..+.|.++.||..+..++..+....
T Consensus 58 ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 58 IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 1222333344556679999999999999999988873
|
|
| >PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00044 Score=78.04 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhccC-CCceEEEEEcCCCCCCCCC-CCeEEEecCCCC
Q 000697 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA-KGERVLFHYNGHGVPKPTA-NGEIWLFNKSYT 219 (1348)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~-~~~r~lfhy~ghg~p~pt~-~g~i~~~~~~~~ 219 (1348)
+.+=.+.+.+.| +.+ .+.. ... ...|||.+++++.+..+-+.+ +.+.++|||-|||...+.. .+++..++..
T Consensus 20 ~~~D~~~~~~~L-~~~-gf~~-~~~-l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~-- 93 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKL-GFDV-ENI-LIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGY-- 93 (248)
T ss_dssp HHHHHHHHHHHH-HHT-TEEE-EEE-EEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSE--
T ss_pred HHHHHHHHHHHH-HHc-CCce-eec-cccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccccCCccCcccccccce--
Confidence 344455666666 222 1111 111 356999999999988886555 6789999999999775432 3444444322
Q ss_pred eeeecc----hHhhhhhcC------CCeEEEEeCCchhhHHHHHHhhccCC-----------------CCCCCCCCcceE
Q 000697 220 QYIPLP----ISDLDSWLK------TPSIYVFDCSAAGMIVNAFIELHDWG-----------------ASNYSGSTRDCI 272 (1348)
Q Consensus 220 ~y~p~~----~~~l~~~~~------~p~~~v~dc~~ag~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 272 (1348)
.+|+. +.+.+..+. .|-++|+||..+|.+........... .........+.+
T Consensus 94 -~~~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (248)
T PF00656_consen 94 -LLPLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFI 172 (248)
T ss_dssp -EEEHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEE
T ss_pred -eeecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcE
Confidence 24654 344333332 34599999999999877653321110 011123566889
Q ss_pred EEEecCCcCCCCCCCCCCchhhhhcccch
Q 000697 273 LLAACEAHETLPQSEEFPADVFTSCLTTP 301 (1348)
Q Consensus 273 ~~~ac~~~e~lp~~~~lp~D~ftscl~tP 301 (1348)
+++||..+|.---.+....=+||-.|..=
T Consensus 173 ~~~as~~~~~s~e~~~~~~g~ft~~L~~~ 201 (248)
T PF00656_consen 173 VLSASRPGQTSYEDSPGSGGLFTYALLEA 201 (248)
T ss_dssp EEESSSTTBCEEEECTTTEEHHHHHHHHH
T ss_pred EEEeccccceeecccCccCHHHHHHHHHH
Confidence 99999999988877778888999888543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A .... |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.033 Score=63.64 Aligned_cols=245 Identities=17% Similarity=0.190 Sum_probs=162.1
Q ss_pred CCchhhHHHHhhc--hhhHHHHHHHHHHHhcCCHHHHHHHHhcC--chhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000697 460 PEQLPIVLQVLLS--QCHRFRALVLLGRFLDMGPWAVDLALSVG--IFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 460 p~~lP~vLq~LlS--~~~rlral~ll~~Fld~~~wAv~lal~~g--ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
.|-+|++.-+|-| .+-+.++..-++. |....-|+.-....+ ..|-.+.|..++.+..|-.+.--+ ++++-|-.-
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisn-IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL-rnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISN-IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL-RNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhh-hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH-hhhcccchh
Confidence 3778888887776 3444555544333 223334444444455 788889999888776664433333 788889999
Q ss_pred hhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000697 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~ 615 (1348)
|.+.+..|+....++.|+++.. |+.-+ ..||+--| .-+|-.-..-...++..-+..+|.. ..+-|....+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~-plila-sVaCIrni-sihplNe~lI~dagfl~pLVrlL~~------~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMG-PLILA-SVACIRNI-SIHPLNEVLIADAGFLRPLVRLLRA------GDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcch-hHHHH-HHHHHhhc-ccccCcccceecccchhHHHHHHhc------CCchhhhhhHH
Confidence 9999999999999999988765 33322 22333111 1233333333466777777777763 23344554444
Q ss_pred HHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 000697 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1348)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1348)
=.|-.|-..++..+..-.+.++..++..|+.|+.-+||.++--+++.+.-. +.++....+..++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~---------------d~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN---------------DNDKEALLDSGIIP 420 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc---------------cccHHHHhhcCCcc
Confidence 444444455666666668889999999999999999999998888888622 12223445777788
Q ss_pred HHhhhccCCChhhHHHHHHHHHHHHHhc--chhHHHH
Q 000697 696 SLLTVVSDGSPLVRAEVAVALARFAFGH--KQHLKSI 730 (1348)
Q Consensus 696 ~ll~~~~D~sp~VR~e~~~~ls~~~~~~--~~~f~~~ 730 (1348)
.|+++..|.|-+||-.+..+|.-|.... +..|+.+
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 8999999999999999999888776553 3444443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.25 Score=59.85 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=126.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce----------------------eEEe--------------eee
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ----------------------KLVT--------------AFS 1125 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~----------------------~lvs--------------~~~ 1125 (1348)
.|+.+.| ..+..-|++|...|.|-||+....+... ++.. +..
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 5888999 6788889999999999999875421111 0000 000
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-------cCCCCCCeEEEEEe----cCCC--
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-------PSSSDCSISALTAS----QVHG-- 1192 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-------~~~~~~~VtsL~~~----s~dg-- 1192 (1348)
.+....+.|.. ++.+ +=+.+++|..+|.+.|.|++... .+..- .......|+++.|. ..|+
T Consensus 81 l~~~~~g~vta----l~~S-~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 81 LLDAKQGPVTA----LKNS-DIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EE---S-SEEE----EEE--BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred heeccCCcEeE----EecC-CCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 01112233333 4444 67899999999999999998877 55442 22234457777432 2222
Q ss_pred -CEEEEEeCCCeEEEEECCC-C-C-eeeEeecCCCCCCCCeEEEEEe-cC------------------CCCCEEEEEECC
Q 000697 1193 -GQLAAGFVDGSVRLYDVRT-P-D-MLVCSTRPHTQQVERVVGISFQ-PG------------------LDPAKIVSASQA 1249 (1348)
Q Consensus 1193 -~~LvsGs~DG~VrvwDlr~-~-~-~~v~~~~~~~~h~~~I~sl~~s-p~------------------~~g~~LaSgs~D 1249 (1348)
-.+++|...|.+.+|.+-. . . -.+........+.+.|..+..- .+ ..-+-++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 4788999999999998862 1 1 1111111112345666666532 22 001224444456
Q ss_pred CcEEEEEcCCCCcceEEEecCCCCeEEEEE-----eCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCe
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV-----HRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~-----spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
..++++...+.+...+.++ ..-....+.+ ...+..|++-..+|.|++|.+- -+.+..++. ... .....+
T Consensus 235 ~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l-~~~---~d~~~~ 309 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL-PPP---LDSRRL 309 (395)
T ss_dssp SEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--SS------HHHH
T ss_pred cceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC-CCc---cccccc
Confidence 7899999887643344442 2122233444 2356688888999999999964 466666665 321 122334
Q ss_pred EEEEEeCCCCEEEEEEC
Q 000697 1324 NCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1324 tslafspdg~~Latgs~ 1340 (1348)
....++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887765543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.54 Score=57.49 Aligned_cols=248 Identities=14% Similarity=0.159 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC--------
Q 000697 1038 TKTALLQPFSPIVVAA-DENE----RIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCN-------- 1103 (1348)
Q Consensus 1038 I~sl~fspdg~~Latg-s~dg----~I~VWd~~t~~~l~~-~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-------- 1103 (1348)
+....++|+|+++|.+ +..| .++|+|+++|+.+.. +.... ...+.| .+++..|+-...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-----~~~~~W--~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-----FSSVSW--SDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-----SEEEEE--CTTSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-----cceEEE--eCCCCEEEEEEeCcccccccC
Confidence 4467899999988865 3334 499999999977653 23221 234888 6776665554422
Q ss_pred ---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CC-CeEEEEECCCC---ceeeee
Q 000697 1104 ---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EV-SSIMLWDLEKE---QQMVNP 1173 (1348)
Q Consensus 1104 ---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~D-g~IrVWDl~t~---~~~v~~ 1173 (1348)
..|..|++.+....-.++ +.+...... .+.+..+.++.++++.. .+ ..+.+.|+..+ ......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lv-----fe~~~~~~~--~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELV-----FEEPDEPFW--FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEE-----EC-TTCTTS--EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred CCCcEEEEEECCCChHhCeeE-----EeecCCCcE--EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 237777776533333344 343333331 12377889999988763 23 45888888874 112333
Q ss_pred ecCCCCCCeEEEEEecCCCCEEEEE---eCCCeEEEEECCCCCe--eeEeecCCCCCCC--CeEEEEEecCCCCCEEEEE
Q 000697 1174 IPSSSDCSISALTASQVHGGQLAAG---FVDGSVRLYDVRTPDM--LVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1174 l~~~~~~~VtsL~~~s~dg~~LvsG---s~DG~VrvwDlr~~~~--~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSg 1246 (1348)
+..+.......+ ... ++.+++.. ..++.|...++..... ....+- .|.. .+..+.... +.+++..
T Consensus 272 l~~~~~~~~~~v-~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~---~~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYV-DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK---DYLVLSY 343 (414)
T ss_dssp EEESSSS-EEEE-EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET---TEEEEEE
T ss_pred EeCCCCceEEEE-Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC---CEEEEEE
Confidence 333333323333 222 33344433 2346788888887652 111221 2223 455555532 3455555
Q ss_pred ECCCc--EEEEEcCCCCcceEEEec-CCCCeEEEEEeCCCCEE-EE-EeC--CCcEEEEEcCCceEEEE
Q 000697 1247 SQAGD--IQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPII-AS-GSA--KQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1247 s~DG~--I~IWDlr~~~~~v~t~~~-h~~~VtsLa~spdg~~L-as-gS~--Dg~I~Vwd~~g~~l~~i 1308 (1348)
..++. |+++|+..+ .....+.. -.+.|..+...+++..+ ++ .|. -+++..||+....+..+
T Consensus 344 ~~~~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EETTEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EECCccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 55554 888898822 23333332 34456666655655532 22 222 24567777655544444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.094 Score=65.48 Aligned_cols=89 Identities=6% Similarity=-0.038 Sum_probs=59.9
Q ss_pred CcEEEEEcCC----CCcceEEEecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCce-------------EEEEecc
Q 000697 1250 GDIQFLDIRN----HKDAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-------------LGTIRYH 1311 (1348)
Q Consensus 1250 G~I~IWDlr~----~~~~v~t~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~~g~~-------------l~~i~~~ 1311 (1348)
+.|.+.|.++ +...+..+.. ......+.++|||++++++ ..+.+|.|+|+.... ..+++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4577778776 2234444443 3456889999999977665 458899999965321 222221
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...-...+|.++|....|-.-|..|..||
T Consensus 374 --------GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 374 --------GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred --------CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 12335678999998888888899999996
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.03 Score=69.44 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
-.+++++|||..-.|+.|-.-|.+.||...+.+.-.....|. ..|..+.| +++|+.++|+..-|.|.+|+...-.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~---a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP---APIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC---CCceeEEe--cCCCCeEEEcCCCceeEEEEeeecc
Confidence 456789999999999999999999999988777666667777 89999999 8999999999999999999875210
Q ss_pred ------------CceeEEeeeecccC-------CCCcccc----cceEEEEe-------------cCCCeEEEEECCCeE
Q 000697 1116 ------------DKQKLVTAFSSIQG-------HKPGVRC----SNVVVDWQ-------------QQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1116 ------------~~~~lvs~~~~l~~-------h~~~V~s----i~~~v~ws-------------~~~~~Ll~gg~Dg~I 1159 (1348)
++.....+++--.. ....|.+ +-....|. ++|..+++++.+|+|
T Consensus 135 ~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtV 214 (1416)
T KOG3617|consen 135 EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTV 214 (1416)
T ss_pred ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceE
Confidence 01111111111100 0000100 00001222 456678888999999
Q ss_pred EEEECCCCceeeeeecCCCC---------CCeEEEEEe--------cCCCC------EEE---EEeCCCeEEEEECCCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSD---------CSISALTAS--------QVHGG------QLA---AGFVDGSVRLYDVRTPD 1213 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~---------~~VtsL~~~--------s~dg~------~Lv---sGs~DG~VrvwDlr~~~ 1213 (1348)
+..|-.... ....+..+. ..|.++.-+ .+.|. .=+ .|+..|.|-+=... +
T Consensus 215 yyvdq~g~~--~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-G- 290 (1416)
T KOG3617|consen 215 YYVDQNGRQ--RTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-G- 290 (1416)
T ss_pred EEEcCCCcE--EEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-c-
Confidence 888854332 222222111 113332111 11110 000 01111111110000 0
Q ss_pred eeeEeecC-CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cc---eEEEe---cCCCCeEEEEEeCCC
Q 000697 1214 MLVCSTRP-HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DA---YLTID---AHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1214 ~~v~~~~~-~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~---v~t~~---~h~~~VtsLa~spdg 1283 (1348)
+.+.-.. -......++|+++... +..++.|...|.+.+|--...+ .+ ..++. ...+.|+.+.|.|-.
T Consensus 291 -vLr~~eKyg~e~ge~~~c~cY~~~--~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 291 -VLRKSEKYGLELGEGILCMCYGEK--EIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred -cccCCcchhhhcCCceEEEEEecc--ceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 0000000 0012467999999988 8899999999999999533211 12 22232 335789999999977
Q ss_pred CEEEEEeCC
Q 000697 1284 PIIASGSAK 1292 (1348)
Q Consensus 1284 ~~LasgS~D 1292 (1348)
+.++..+..
T Consensus 368 ~~~avn~~~ 376 (1416)
T KOG3617|consen 368 STAAVNTEE 376 (1416)
T ss_pred chhhhhhhh
Confidence 666655543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=66.78 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCC
Q 000697 1054 DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130 (1348)
Q Consensus 1054 s~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h 1130 (1348)
.....|.-.|++.|+.+..|+.+.. ..|..++=.. .-+....++|-++..+..||.+... .+++.. ..+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~----~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDS----QSK 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeec----ccc
Confidence 3567788889999999999998871 2255443210 0124456677788889999997632 223310 111
Q ss_pred CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 000697 1131 KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1348)
Q Consensus 1131 ~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDl 1209 (1348)
.. .+...+.+.-....|+|++|+.+|.||+||--... ....+++ -+.+|.+| ..+.+|+++++.+ +..+.++|.
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~-lG~pI~~i-Dvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPG-LGDPIIGI-DVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cc-ccCCCceEEEecCCceEEEEeCCCcEEeecccchh-hhhcCCC-CCCCeeEE-EecCCCcEEEEee-cceEEEEEE
Confidence 10 11111223334468999999999999999954333 3344444 45679999 6788999998776 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=60.98 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC------CCEEEEEeC----------CCeEEEEECCCC----Ceee
Q 000697 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH------GGQLAAGFV----------DGSVRLYDVRTP----DMLV 1216 (1348)
Q Consensus 1157 g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d------g~~LvsGs~----------DG~VrvwDlr~~----~~~v 1216 (1348)
+.|++.|..+.+ .+..+.-.....+++++.+.-. ..+|+.|+. .|.|.+|++... .+..
T Consensus 2 s~i~l~d~~~~~-~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFE-VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSS-EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCe-EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 358888988887 7776665555557777554422 467777754 299999999984 1122
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1217 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1217 ~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
... . ....++|++++--. +. |+++. ++.|.+|++.........-. .....++++... +.+++.|...+.+
T Consensus 81 ~i~-~-~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 81 LIH-S-TEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEE-E-EEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEE-E-EeecCcceEhhhhC---CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 111 1 12358899998762 44 54444 47899999997731222221 123356666665 5699999988888
Q ss_pred EEEE--cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1296 KVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1296 ~Vwd--~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.++. ..+..+..+.. .. ....++++.|-+++..++++..+|.+.++
T Consensus 152 ~~~~~~~~~~~l~~va~-d~-----~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DY-----QPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ES-----S-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEEEEEccCCEEEEEEe-cC-----CCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 8875 44555555543 21 13568889998666788899999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0085 Score=73.58 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=82.7
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEE
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i 1308 (1348)
|.--+++.. +.+++.|+.-|.+.+|+-..+........+..+.+..+.+|++..++|.|+..|.|.|+.+........
T Consensus 36 v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 333344444 889999999999999997765333333434556677888999999999999999999998543222221
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.+ -..+...|...|++++|+++++.+.+|...|+|..
T Consensus 114 ~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 114 DY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ee-eccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 11 11112236689999999999999999999898764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.047 Score=71.05 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=108.5
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
.++++-.+|++++- -.|--+...||.+.++-.. +....-.+++.+.+..|+ ||.|.||.++|.|+||+=.
T Consensus 349 ~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEW--KERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhh
Confidence 35777788887775 5566566677888766544 344456778888999999 9999999999999999998
Q ss_pred cchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHH-HHHHHH-HHhhh
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRA-EISIIR-SLLTV 700 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~-~ll~~ 700 (1348)
++...-.....+.+...|+..+.|. .|.|-+.++.||=.|... +.... +.- =..+.. .+..+
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--------------~~~~~-l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--------------CDKSI-LEPYLDGLMEKKLLLL 483 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--------------CcHHH-HHHHHHHHHHHHHHHH
Confidence 8765444334455555566666655 789999998888888722 21111 110 011122 44556
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcchhH
Q 000697 701 VSDGSPLVRAEVAVALARFAFGHKQHL 727 (1348)
Q Consensus 701 ~~D~sp~VR~e~~~~ls~~~~~~~~~f 727 (1348)
...++|.|++.++-+++-+...=+..|
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 778999999999999887665433333
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.33 E-value=3.6 Score=52.03 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC-CCe-------EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD-KGI-------SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~-~~I-------tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+..|++++.++.|.-.|.++|+.+.++....... ..+ ..+.+ .+..++.++.||.+.-.|..+ ++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~T--Gk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKT--GKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCC--CCE
Confidence 5577777778899999999999988876432100 010 11233 245777888899999888866 443
Q ss_pred eEEeeeecccCCC--CcccccceEEEEecCCCeEEEEEC------CCeEEEEECCCCceeeeeecCC-------------
Q 000697 1119 KLVTAFSSIQGHK--PGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSS------------- 1177 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~--~~V~si~~~v~ws~~~~~Ll~gg~------Dg~IrVWDl~t~~~~v~~l~~~------------- 1177 (1348)
.-.. ....+. ..+.+..++ .++.++++.. +|.|..+|.++++ .+-.+..-
T Consensus 143 ~W~~---~~~~~~~~~~~tssP~v-----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 143 VWSK---KNGDYKAGYTITAAPLV-----VKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred Eeec---ccccccccccccCCcEE-----ECCEEEEeecccccCCCcEEEEEECCCCc-eeEeccCcCCCcccccccccc
Confidence 3221 111111 112221111 1456666642 6889999999988 54433221
Q ss_pred -----------------CCCCeEEEEEecCCCCEEEEEeCC-----C-----------eEEEEECCCCCeeeEeecCCCC
Q 000697 1178 -----------------SDCSISALTASQVHGGQLAAGFVD-----G-----------SVRLYDVRTPDMLVCSTRPHTQ 1224 (1348)
Q Consensus 1178 -----------------~~~~VtsL~~~s~dg~~LvsGs~D-----G-----------~VrvwDlr~~~~~v~~~~~~~~ 1224 (1348)
.+..+......+++.++++.+..+ + +|.-.|+++++ ..-.++.. .
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~-~~W~~Q~~-~ 291 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK-IKWHYQTT-P 291 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC-EEEeeeCC-C
Confidence 111233222445556677766633 2 67777888887 44334321 2
Q ss_pred CCC-------CeEEEEEecCCCCC---EEEEEECCCcEEEEEcCCCCcce
Q 000697 1225 QVE-------RVVGISFQPGLDPA---KIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1225 h~~-------~I~sl~~sp~~~g~---~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
|.. ...-+.+..+ |+ .++.++.+|.+.+.|-+++ +++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~--G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKD--GKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred CCCccccCCCCcEEEEeccC--CcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 221 1122223233 54 7889999999999999887 554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.8 Score=50.03 Aligned_cols=280 Identities=11% Similarity=0.036 Sum_probs=117.6
Q ss_pred EEcCCCCEEEEE-ECCCc--EEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1042 LLQPFSPIVVAA-DENER--IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1042 ~fspdg~~Latg-s~dg~--I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+|.++|+.|+.+ ..+|. +.+.|+++++..+--.+.. .......+ +++++.++-...+..|+--|+.+ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~T--~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFL--SPDDRALYYVKNGRSLRRVDLDT--LEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE---TTSSEEEEEETTTEEEEEETTT----E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---CCccceEE--ecCCCeEEEEECCCeEEEEECCc--CcE
Confidence 467889755544 44555 5555888877665443321 11112333 46667665555556777777766 333
Q ss_pred eEEeeeecccCCCCcccccceEEEEe-cCCCeEEEEEC-----------------------CCeEEEEECCCCceeeeee
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGE-----------------------VSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws-~~~~~Ll~gg~-----------------------Dg~IrVWDl~t~~~~v~~l 1174 (1348)
+.+ ..+. ...+-. ..|. ..++..+++.. ...|.-.|+.+++ ....+
T Consensus 115 ~~v---y~~p--~~~~g~----gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~ 184 (386)
T PF14583_consen 115 RVV---YEVP--DDWKGY----GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVF 184 (386)
T ss_dssp EEE---EE----TTEEEE----EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEE
T ss_pred EEE---EECC--cccccc----cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEE
Confidence 333 1121 111111 2332 22333343321 1234455666665 32222
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeC---CC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE-EE-C
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFV---DG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-AS-Q 1248 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~---DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaS-gs-~ 1248 (1348)
. . ...+..+.+.+.+..+|+-+-+ +. .-|+|=+++.....+.+.... ....+.-=-|.|+ |..|.- +. .
T Consensus 185 ~-~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~D--G~~i~y~~~~~ 259 (386)
T PF14583_consen 185 E-D-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPD--GSTIWYDSYTP 259 (386)
T ss_dssp E-E-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TT--SS-EEEEEEET
T ss_pred e-c-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCC--CCEEEEEeecC
Confidence 2 2 2346777555556666666543 22 136676664432333332221 1234444557777 554432 22 2
Q ss_pred ---CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC----------------cEEEEEcCCceEEEEe
Q 000697 1249 ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ----------------LIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1249 ---DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg----------------~I~Vwd~~g~~l~~i~ 1309 (1348)
+..|.-+|..++. ...... ...-..+..+++|.+++-=+.|. -|++++........+.
T Consensus 260 ~~~~~~i~~~d~~t~~-~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGE-RRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TT--EEEEEE-TTT---EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCceEEEeeCCCCCC-ceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 2246667777652 222121 12344566678888887544432 4556776655555555
Q ss_pred ccCCc-c---cccccCCeEEEEEeCCCCEEEEEE-CCCeEEEc
Q 000697 1310 YHHPS-F---MAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIH 1347 (1348)
Q Consensus 1310 ~~h~~-f---~~~~~~~Vtslafspdg~~Latgs-~Dg~I~IW 1347 (1348)
. |.. + .+.+...=....|+||+++++-.| ..|...||
T Consensus 337 ~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 337 R-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred e-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 4 431 1 111111225679999998766554 47877765
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=64.18 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=154.9
Q ss_pred HhHhhhHHHhcCCCCCCCCCCchhhHHHHhhchhhHH--HHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhh
Q 000697 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1348)
Q Consensus 441 ~~Ltafe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rl--ral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr 518 (1348)
+.|+.++..+..-+.....|. |+++..|.+...+. -++.+|.+.++...+... ..++.+++.+.|+++.+..|
T Consensus 20 ~~L~~l~~~~~~~~~l~~~~~--~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 20 EALPELKTELSSSPFLERLPE--PVLFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred HHHHHHHHHHhhhhHHHhchH--HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHH
Confidence 557777766654442222222 34555566552221 233356777766655543 46888999999999999999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000697 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1348)
Q Consensus 519 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 598 (1348)
..++-.+.++..........+...+.+...+..|.+++. +....++=+|..+.. ++.+-..-+..++...+..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~- 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMS- 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHh-
Confidence 998888888887655545556677888999999988875 778888889999986 4555555668888888888887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 599 ~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
.++..+|-=+.=++.++....++.-..+.+.++...++..|++....||..++=.|+.+..
T Consensus 171 ------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 171 ------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred ------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 4455666556667888888888888888999999999999999999999999999999984
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=54.67 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=63.6
Q ss_pred hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 000697 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1348)
Q Consensus 546 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~ 625 (1348)
+.+++.|.. +..+..|..++.+|+.+. ...+...+..+++ |++|.||.+++.+||++=.
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~i~~-- 60 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELG-----------DPEAIPALIELLK-------DEDPMVRRAAARALGRIGD-- 60 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-------SSSHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC--
Confidence 345667733 223689999999998442 3367888999998 8999999999999998821
Q ss_pred hHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHH
Q 000697 626 TEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLG 661 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~ 661 (1348)
..+...|..++. |.+..||.+++.+||
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123346777664 567889999999987
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.11 Score=50.73 Aligned_cols=100 Identities=17% Similarity=0.320 Sum_probs=67.8
Q ss_pred EEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1141 VDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1141 v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
++|..++ ..|++|++|..||+|+-. . .+.++.... .|++++.. .+..|+.|..+|+|.+|+.... .|
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e-~~~Ei~e~~--~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~R-----lW 75 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--E-IVAEITETD--KVTSLCSL--GGGRFAYALANGTVGVYDRSQR-----LW 75 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--c-EEEEEeccc--ceEEEEEc--CCCEEEEEecCCEEEEEeCcce-----ee
Confidence 4455443 579999999999999854 4 677776643 38888444 4578999999999999986432 22
Q ss_pred cCCCCCCCCeEEEEEecC-C-CCCEEEEEECCCcEEE
Q 000697 1220 RPHTQQVERVVGISFQPG-L-DPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~-~-~g~~LaSgs~DG~I~I 1254 (1348)
+... +..++++++..- + +...|++|-.+|.|-+
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2221 244777766443 1 3358999999998743
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.087 Score=66.49 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=101.7
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 501 gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
-+|+.+++++++...+.|.+.-..|..+...++.-- .+ ..+.+.+-|.+++ +..|.++.=+|+.+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n--~~~~~lAL~~l~~i~------- 107 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPN--PYIRGLALRTLSNIR------- 107 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSS--HHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCC--HHHHHHHHhhhhhhc-------
Confidence 678999999999999999886666667777665511 11 2234444455544 578888888888876
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1348)
..-+-..+...+...|. +++|.||.-+++|+.++...+++. ++......+..+|.|.+|.|+.+++.++
T Consensus 108 ~~~~~~~l~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp SHHHHHHHHHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 11133456777788888 899999999999999999876552 1122566888999999999999999999
Q ss_pred Hhh
Q 000697 661 GTL 663 (1348)
Q Consensus 661 ~~~ 663 (1348)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.9 Score=50.49 Aligned_cols=210 Identities=12% Similarity=0.134 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCEEEEEE--CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1038 TKTALLQPFSPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs--~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
...++++.||+++++.. -.-.|.|-|++.++.+..+.... ..+.| +..+ .-+.+-+.||.+.-..+.. .
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iy-P~~~-~~F~~lC~DGsl~~v~Ld~-~ 167 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIY-PSGN-RGFSMLCGDGSLLTVTLDA-D 167 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEE-EEET-TEEEEEETTSCEEEEEETS-T
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEE-ecCC-CceEEEecCCceEEEEECC-C
Confidence 34567889999887754 44579999999999998888665 22333 3333 4577888999999888875 3
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCC-----------CCCCeE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSS-----------SDCSIS 1183 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~v~~l~~~-----------~~~~Vt 1183 (1348)
|+.... ....+.....++.. .-.+...++.++-.+.+|.|+--|+..... ....+..- .+..+.
T Consensus 168 Gk~~~~-~t~~F~~~~dp~f~---~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 168 GKEAQK-STKVFDPDDDPLFE---HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp SSEEEE-EEEESSTTTS-B-S-----EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCEeEe-eccccCCCCccccc---ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 443322 22233332333322 134455666666678888888888876650 11222110 111222
Q ss_pred EEEEecCCCCEEEEEe--CCC-------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEE
Q 000697 1184 ALTASQVHGGQLAAGF--VDG-------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQ 1253 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs--~DG-------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~ 1253 (1348)
+ +....+++++.-. .+| .|.+||+.+++.+ ..+ ... ..+.+|.++.+ ....|++.+ .++.+.
T Consensus 244 A--~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv-~Ri-~l~---~~~~Si~Vsqd-~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 244 A--YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV-ARI-PLE---HPIDSIAVSQD-DKPLLYALSAGDGTLD 315 (342)
T ss_dssp E--EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE-EEE-EEE---EEESEEEEESS-SS-EEEEEETTTTEEE
T ss_pred e--eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE-EEE-eCC---CccceEEEccC-CCcEEEEEcCCCCeEE
Confidence 2 2334444444321 122 5888899998844 444 221 46779999988 556776654 578999
Q ss_pred EEEcCCCCcceEEEec
Q 000697 1254 FLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~ 1269 (1348)
+||..++ +.++++..
T Consensus 316 v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 316 VYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEETTT---EEEEE--
T ss_pred EEeCcCC-cEEeehhc
Confidence 9999998 78887764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.062 Score=69.65 Aligned_cols=141 Identities=12% Similarity=0.144 Sum_probs=95.5
Q ss_pred cChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 543 ~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
.+|...++.+++.+ .++|.|+-+-|...-+..++- ---+.+.+.+=++ |++|.+|..++=.|+.+-
T Consensus 68 ~LF~dVvk~~~S~d--~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~-------d~Np~IRaLALRtLs~Ir 133 (746)
T PTZ00429 68 YLFVDVVKLAPSTD--LELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTT-------NSSPVVRALAVRTMMCIR 133 (746)
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcC-------CCCHHHHHHHHHHHHcCC
Confidence 35556666666665 499999998887775444331 1112334444455 889999999999998766
Q ss_pred ccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 000697 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS 702 (1348)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~ 702 (1348)
.. + +-+.+...+-.++.|++|-||+.+++++.++.....+.. .+..+...|..++.
T Consensus 134 ~~--~-----i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-----------------~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 134 VS--S-----VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-----------------YQQDFKKDLVELLN 189 (746)
T ss_pred cH--H-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----------------cccchHHHHHHHhc
Confidence 42 1 222334456788899999999999999999974432111 12223344556678
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 000697 703 DGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 703 D~sp~VR~e~~~~ls~~~~ 721 (1348)
|.+|+|...++.+|..+..
T Consensus 190 D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 9999999999998877753
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.24 Score=59.54 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=97.7
Q ss_pred EecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-------CEEEEEeCCCeEEEEECCCCCe
Q 000697 1143 WQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-------GQLAAGFVDGSVRLYDVRTPDM 1214 (1348)
Q Consensus 1143 ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-------~~LvsGs~DG~VrvwDlr~~~~ 1214 (1348)
...+.+.|+.. +.-..++-.|+++++ .+.++..+.+-.+..+ .++. ..-+.|-.|..|.-||.|-...
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~di~mv~~---t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDDINMVDI---TPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccce-eeeEeeccCCcceeec---cCCcchhcccccccEEeecCCceEEecccccCc
Confidence 33455555555 445668999999999 9999998766223332 2322 2234577899999999995442
Q ss_pred -eeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1215 -LVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1215 -~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
.+...+.+. ..+....|.+-.. ..+||+||.+|.|++||- .+......+.+-..+|..+..+.+|++|++.+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~- 491 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK- 491 (644)
T ss_pred ceeeeeeccccccccccceeeecC---CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence 111111111 1123344555443 568999999999999997 443566677788889999999999998876654
Q ss_pred CcEEEEE
Q 000697 1293 QLIKVFS 1299 (1348)
Q Consensus 1293 g~I~Vwd 1299 (1348)
..+.+.+
T Consensus 492 tyLlLi~ 498 (644)
T KOG2395|consen 492 TYLLLID 498 (644)
T ss_pred cEEEEEE
Confidence 4666666
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.02 Score=61.53 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1348)
|..|.-+..+++-+|..|+. +=+.....+...|+ |++|.||.-++.+|++|... +- +-++..+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~-------D~~~~VR~~al~~Ls~Li~~-d~---ik~k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLR-------DEDPLVRKTALLVLSHLILE-DM---IKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHc-Cc---eeehhhhh
Confidence 57899999999999988876 44556778888899 89999999999999999854 11 22444554
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhhccc
Q 000697 639 AIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 666 (1348)
..++.++.|++|+||+.+.++|..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999854
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.99 E-value=4.1 Score=46.66 Aligned_cols=238 Identities=15% Similarity=0.192 Sum_probs=124.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeE---E
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL---V 1121 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l---v 1121 (1348)
..++.|+.|.++| +.+++.........+.... .|..+... ++-+.|++-+ ||.+.++++..-...... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 4678999999888 8999984333333333222 48899885 4555555554 499999998652211100 0
Q ss_pred eeee-cccCCCCcccccceEEE--EecCCCeEEEEECCCeEEEEECCCC-----ceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1122 TAFS-SIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIMLWDLEKE-----QQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1122 s~~~-~l~~h~~~V~si~~~v~--ws~~~~~Ll~gg~Dg~IrVWDl~t~-----~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
..-. .............+ .+ -...+...++....+.|.+|..... . ..+++... ..+.++++. ++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~-~~ke~~lp--~~~~~i~~~---~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK-LLKEISLP--DPPSSIAFL---GN 149 (275)
T ss_pred ccccccccccccccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccc-eeEEEEcC--CCcEEEEEe---CC
Confidence 0000 00001111111100 11 1123444555555568888877653 3 45555543 337888665 67
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCC---------CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ---------QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~---------h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.++.|..++ ..+.|+.++. .......... ...++..+.. ++ +.+|++- |..-.+.|.. + ++.
T Consensus 150 ~i~v~~~~~-f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~e~Ll~~--~~~g~fv~~~-G-~~~ 220 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SD--NEFLLCY--DNIGVFVNKN-G-EPS 220 (275)
T ss_pred EEEEEeCCc-eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe-CC--ceEEEEe--cceEEEEcCC-C-CcC
Confidence 888887655 7788998665 2222211110 1123333333 22 4555543 3333444443 2 222
Q ss_pred E--EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1265 L--TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1265 ~--t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
+ .+.- .....+++++ .+++++.+. +.|.||+ .+|+.++.+..
T Consensus 221 r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 221 RKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2 2222 2245566664 467777665 4599999 57888888876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.57 Score=57.27 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=87.2
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE-----EE
Q 000697 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV-----GI 1232 (1348)
Q Consensus 1158 ~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~-----sl 1232 (1348)
.|+||+..... +..+.-.. ..|.++ .|.. ...|++-..||.+++||+.... ...+ ...-....|. ..
T Consensus 62 ~I~iys~sG~l--l~~i~w~~-~~iv~~-~wt~-~e~LvvV~~dG~v~vy~~~G~~--~fsl-~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDS-GRIVGM-GWTD-DEELVVVQSDGTVRVYDLFGEF--QFSL-GEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCCCCE--eEEEEECC-CCEEEE-EECC-CCeEEEEEcCCEEEEEeCCCce--eech-hhhccccCccccccccc
Confidence 58999876554 66655444 459999 4544 4567777899999999997433 1111 0000111222 22
Q ss_pred EEecCCCCCEEEEEECCCcEEEEEcCCCCcce--EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEec
Q 000697 1233 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1233 ~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v--~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~ 1310 (1348)
.+..+ |-.++ ..++.+.+. .+..++. +.+..-........+.+....+...+.++.+.|.-..|..+..+..
T Consensus 134 ~~~~~--GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~ 207 (410)
T PF04841_consen 134 WFYKN--GIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDE 207 (410)
T ss_pred ccCCC--CEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEc
Confidence 22222 43333 334544443 2221121 1111111111111112211112223334444444445555554443
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
+....-...+++..|+.||+++++|.-..+|.+.|.
T Consensus 208 -~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 208 -NSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred -cccccccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 221000123689999999999999999999998775
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.07 Score=68.02 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=106.2
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 501 gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
.+||-|+|..++...|+|.++=+-|-++-...|.-+..+ .+.|.+=|++++ ++.|.++.=-|+.+ .
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kDl~d~N--~~iR~~AlR~ls~l-------~ 120 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VNTIQKDLQDPN--EEIRGFALRTLSLL-------R 120 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhhccCCC--HHHHHHHHHHHHhc-------C
Confidence 459999999998899999998888877777777333222 345666666665 69998888777766 2
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1348)
.-.+-+.++.-+.++++ |+.|.||+-+++|++++..-.. ...-+.+....+-.++.|.+|.|-++|+.+|
T Consensus 121 ~~el~~~~~~~ik~~l~-------d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 121 VKELLGNIIDPIKKLLT-------DPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred hHHHHHHHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 22345666777777888 9999999999999999995322 2334444566677888999999999999999
Q ss_pred Hhhc
Q 000697 661 GTLL 664 (1348)
Q Consensus 661 ~~~i 664 (1348)
-.+-
T Consensus 191 ~~i~ 194 (757)
T COG5096 191 AEID 194 (757)
T ss_pred HHhc
Confidence 8876
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.86 E-value=7.6 Score=50.58 Aligned_cols=279 Identities=16% Similarity=0.179 Sum_probs=146.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCc-------EEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEe---CCCeE
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDT-------LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS---CNGNI 1106 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~-------~l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs---~DG~I 1106 (1348)
.|+..-+ ...|.+|+.-|.=.+-.+.+.. .+.+|.+- ++|.+++..+.. .+..++|++ .||++
T Consensus 310 ssi~~L~-ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NL----gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 310 SSINYLD-NGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNL----GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred hhhhccc-CceEEEeccCCceeeEEccccCCCCchhhhhhhcccc----cceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 3444443 4477888877776666654322 22334433 489999887544 456777765 58999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
||.+..- +-.++. ...+.| ...++.+...+.=+.+. +++.+- -+.-++..+..+- ......+-... ...+.
T Consensus 385 RiiRngi--~I~e~A--~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~-ee~~~~gf~~~-~~Tif 455 (1096)
T KOG1897|consen 385 RIIRNGI--GIDELA--SIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEV-EETEDPGFSTD-EQTIF 455 (1096)
T ss_pred EEEeccc--ccceee--EeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccce-EEecccccccc-CceEE
Confidence 9998743 211211 112333 22222211111112222 555543 3334455544332 22222222221 33342
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+..-.++.++=.. ...||++|-. + ....|+.. ..++....+-+ ...++.++.++.+...++...+ ++.
T Consensus 456 ~S~i~g~~lvQvT-s~~iRl~ss~-~--~~~~W~~p----~~~ti~~~~~n--~sqVvvA~~~~~l~y~~i~~~~--l~e 523 (1096)
T KOG1897|consen 456 CSTINGNQLVQVT-SNSIRLVSSA-G--LRSEWRPP----GKITIGVVSAN--ASQVVVAGGGLALFYLEIEDGG--LRE 523 (1096)
T ss_pred EEccCCceEEEEe-cccEEEEcch-h--hhhcccCC----CceEEEEEeec--ceEEEEecCccEEEEEEeeccc--eee
Confidence 3334455544333 3468888766 1 23334332 34444444444 5577788878888888887663 222
Q ss_pred Ee--cCCCCeEEEEEeCC------CCEEEEEeCCCcEEEEE--cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEE
Q 000697 1267 ID--AHRGSLSALAVHRH------APIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1336 (1348)
Q Consensus 1267 ~~--~h~~~VtsLa~spd------g~~LasgS~Dg~I~Vwd--~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~La 1336 (1348)
.. .....|.|++++|- .++++.|.++..+.+.- -+...+..... ... .-...|--..|-.+..+|.
T Consensus 524 ~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-~~~---~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 524 VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-SGE---IIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-CCC---ccchheeeEEeeccceEEE
Confidence 22 23568999999974 23789998877665544 23333222211 000 0113455566666788999
Q ss_pred EEECCCeEEEc
Q 000697 1337 AGSADACVSIH 1347 (1348)
Q Consensus 1337 tgs~Dg~I~IW 1347 (1348)
++..||.+.-|
T Consensus 600 valgdG~l~~f 610 (1096)
T KOG1897|consen 600 VALGDGALLYF 610 (1096)
T ss_pred EEcCCceEEEE
Confidence 99999987644
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.6 Score=48.32 Aligned_cols=217 Identities=14% Similarity=0.193 Sum_probs=119.3
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
..++.|+.|+.+| +.+++.....+..+.. +...|.. +..-++-+.+++-+ ||.++++|+..-. ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~q----l~vl~~~~~llvLs-d~~l~~~~L~~l~-~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQ----LSVLPELNLLLVLS-DGQLYVYDLDSLE-PV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEE----EEEecccCEEEEEc-CCccEEEEchhhc-cc
Confidence 4678999999999 8888883312222211 1122555 44455556666554 4999999987654 22
Q ss_pred eee-------------cCCCCCCeEEEE-EecCCCCEEEEEeCCCeEEEEECCCCC----eeeEeecCCCCCCCCeEEEE
Q 000697 1172 NPI-------------PSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1172 ~~l-------------~~~~~~~VtsL~-~~s~dg~~LvsGs~DG~VrvwDlr~~~----~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
..- .......+...+ .....+...++......|.+|...... ...+.+. . ...+.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l---p~~~~~i~ 145 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L---PDPPSSIA 145 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c---CCCcEEEE
Confidence 210 111111244442 122344444555556699998887642 2333332 2 26889999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h------------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
|.. +.++.|..+ ...+.|+.++ .....+... ..++..+... ++.+|++. |..-.+.|..
T Consensus 146 ~~~----~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 146 FLG----NKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred EeC----CEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC
Confidence 974 477777755 4788899865 333222211 1233334443 45666654 3444556677
Q ss_pred CceEE--EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLG--TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~--~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+... .++- .....++++. ..+|++.+. +.|.||+
T Consensus 217 G~~~r~~~i~W---------~~~p~~~~~~--~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 217 GEPSRKSTIQW---------SSAPQSVAYS--SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred CCcCcccEEEc---------CCchhEEEEE--CCEEEEECC-CEEEEEE
Confidence 76554 3332 1345666663 457776654 4588774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.017 Score=57.15 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=64.7
Q ss_pred hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 585 ~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+-.++.+++.+|.. ..+|..-+-+|.=||.|+.-+|.++.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 41 ~~~llk~L~~lL~~------s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDK------SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcc------CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44577888888853 458999999999999999999999999988899999999999999999999999999988
Q ss_pred c
Q 000697 665 D 665 (1348)
Q Consensus 665 ~ 665 (1348)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.026 Score=41.72 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.1
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.+...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.5 Score=46.31 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=68.1
Q ss_pred eEEEEEecCCC---CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1182 ISALTASQVHG---GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1182 VtsL~~~s~dg---~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
|++|+.+.-++ +.|++|+.|..||+|+-.. ++..+.. .+.|++++-.. +..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e----~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE----TDKVTSLCSLG---GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec----ccceEEEEEcC---CCEEEEEecCCEEEEEeCc
Confidence 56665555444 6899999999999997542 4444422 26788887664 4679999999999999864
Q ss_pred CCCcceEEEecCCCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHR-H--A-PIIASGSAKQLIKV 1297 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~sp-d--g-~~LasgS~Dg~I~V 1297 (1348)
. .+-.++. +..++++++.. + | +-|++|-.+|.|-+
T Consensus 72 ~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 2223332 33466666554 2 2 27888888887743
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.51 E-value=6.1 Score=45.38 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=133.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC-------CCcEEEEeeCCC--CCCCCeEEEEEEeeCCCC------------
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYE-------EDTLLNSFDNHD--FPDKGISKLCLVNELDVS------------ 1095 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~-------t~~~l~~~~~h~--~~~~~ItsL~f~ns~d~~------------ 1095 (1348)
-.+.|+|+|.+.+-++....+...+||.. ...++-++.... ......+.+.| +....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVf--N~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVF--NGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEE--eCCCceEEcCCCcccce
Confidence 36789999999887777788999999986 112333443211 11246788888 22222
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCC-CCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN- 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h-~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~- 1172 (1348)
.++.+++||+|.-|....... .+......+... ...|+. ++.+.-...+.+|+++. ..++|.|+|-.-.. ...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t--~~~~~~~~~d~s~~gavYk-GLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTT--RMTRAEIVVDASQQGNVYK-GLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcc--cccccEEEEccCCCcceee-eeEEeecCCCceEEEeccCCCceEEecCcccc-ccCC
Confidence 367788999999998643111 111111112211 233433 22333334467888885 67999999865332 110
Q ss_pred -e-----ecCCC-CCCeEEE--------EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1173 -P-----IPSSS-DCSISAL--------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1173 -~-----l~~~~-~~~VtsL--------~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
. ++..- ...|..+ +...++++.=+.|..-|.|-+||.... .++.+ ...+.-..-..|+..|.
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe-ccCCcccCCceeeeChh
Confidence 0 11100 0012111 011222333344556689999998754 34444 33344455667777554
Q ss_pred ----CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC------CCeEEEEEeC
Q 000697 1238 ----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------GSLSALAVHR 1281 (1348)
Q Consensus 1238 ----~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~------~~VtsLa~sp 1281 (1348)
..+.+|+---.||+|..||..++ ..+-.+.... ..++.|.|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 24778887778999999999877 5555555432 3577888875
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.3 Score=61.62 Aligned_cols=180 Identities=18% Similarity=0.153 Sum_probs=131.1
Q ss_pred CCCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000697 458 KPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 458 ~~p~~lP~vLq~LlS~~~rlral~--ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
+...-+|-|.+++.|+.+++|-+. .+..|.+..|-...|+ ..-+.|=|+++.+..|..++=.++.|.. +.-
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~ 111 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNPYIRGLALRTLSNIRT--PEM 111 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cch
Confidence 344688999999999999998887 4568888888766654 3556788888888888888777777662 221
Q ss_pred hhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000697 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~ 615 (1348)
- +.+.....+.|.+++ |..|.=++.++..+.+.+|.- +-.. +.+.+..+|. |++|.|+..++
T Consensus 112 ~-----~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~-------d~~~~V~~~a~ 173 (526)
T PF01602_consen 112 A-----EPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLS-------DKDPSVVSAAL 173 (526)
T ss_dssp H-----HHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTT-------HSSHHHHHHHH
T ss_pred h-----hHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhcc-------CCcchhHHHHH
Confidence 1 223455666776555 588999999999999887762 1122 6888889998 88999999999
Q ss_pred HHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.+|..+ ...+..-. .+-......|..++.+++|-++..++-.|..+.
T Consensus 174 ~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 174 SLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 999999 33333211 222333456777789999999999999999887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.41 E-value=7.8 Score=49.07 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=90.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEeC------CCeEEEEeccCCCCcee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASC------NGNIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~-~~~ItsL~f~ns~d~~~L~tgs~------DG~IrIWdl~~~~~~~~ 1119 (1348)
+..++.++.++.+.-.|.++|+.+..+...... ...+++--.+ .+..++++.. +|.|..+|..+ ++..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~T--G~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKT--GKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCC--Ccee
Confidence 346777888999999999999998876543211 0122221111 1234555542 67888888866 3222
Q ss_pred EEeeeecccCC----------------------------CCcccccceEEEEecCCCeEEEEEC-----CC---------
Q 000697 1120 LVTAFSSIQGH----------------------------KPGVRCSNVVVDWQQQSGYLYASGE-----VS--------- 1157 (1348)
Q Consensus 1120 lvs~~~~l~~h----------------------------~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg--------- 1157 (1348)
-. +...... ...+.. ...+.+..+.++.+.. ++
T Consensus 195 W~--~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~---~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 195 WR--RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWG---TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred Ee--ccCcCCCcccccccccccccccccCCCCCCccccCCCCccC---ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 11 1111110 112222 2566777788887742 22
Q ss_pred --eEEEEECCCCceeeeeecCCCCC-------CeEEEEEecCCCC---EEEEEeCCCeEEEEECCCCCe
Q 000697 1158 --SIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDM 1214 (1348)
Q Consensus 1158 --~IrVWDl~t~~~~v~~l~~~~~~-------~VtsL~~~s~dg~---~LvsGs~DG~VrvwDlr~~~~ 1214 (1348)
.|.-.|+++++ ..-.++..+.. .-..|.-...+|+ .++.+..+|.+.+.|.++++.
T Consensus 270 ~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 270 TSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 57778999988 66555532111 0111211224555 788999999999999999874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.38 E-value=5 Score=48.05 Aligned_cols=263 Identities=11% Similarity=0.097 Sum_probs=132.3
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1044 QPFSPIVVAAD---------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1044 spdg~~Latgs---------~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
|||+++++... ..+.+.|||+++++....... . ..+....| +|+|+.++-.. ++.|.+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~- 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLAT- 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE---SSSTEEEEEE-TTEEEEESSTT-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---ccccccee--ecCCCeeEEEe-cCceEEEECCC-
Confidence 67888777642 356789999998765443333 2 57888899 78999988876 46899998765
Q ss_pred CCceeEEeeee---cccCCCC-----cccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCC-CCCeEE
Q 000697 1115 KDKQKLVTAFS---SIQGHKP-----GVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1184 (1348)
Q Consensus 1115 ~~~~~lvs~~~---~l~~h~~-----~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~-~~~Vts 1184 (1348)
+....++.-. .+.|... .+......+-|+|++.+|+... ++..|+.+.+.... ..+. -..+..
T Consensus 73 -~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~------~~~~~yp~~~~ 145 (353)
T PF00930_consen 73 -GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS------PPDSQYPEVES 145 (353)
T ss_dssp -SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES------SSTESS-EEEE
T ss_pred -CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC------CccccCCcccc
Confidence 2222221100 0001110 1111122488999999998874 55555554432111 0000 011344
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEE--ECCC---cEEEEEcC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSA--SQAG---DIQFLDIR 1258 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSg--s~DG---~I~IWDlr 1258 (1348)
+ -.+.-|.--. .-.+.|+|+.+++....... ........+..+.|.++ +..|+.. +.+. .+.++|..
T Consensus 146 ~-~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 I-RYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp E-E--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEEEEEEC
T ss_pred c-ccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEEEEECC
Confidence 4 2232222221 12466788887763211111 01123467899999998 6633333 3333 36777887
Q ss_pred CCCcceEEEecCCCCe---EEEEEe-CCCC-EEEEEeCCCc--EEEEEcCCceEEEEeccCCcccccccCCeEE-EEEeC
Q 000697 1259 NHKDAYLTIDAHRGSL---SALAVH-RHAP-IIASGSAKQL--IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC-LTFHP 1330 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~V---tsLa~s-pdg~-~LasgS~Dg~--I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vts-lafsp 1330 (1348)
++...+.......+.| ....+. +++. ++.....||. |.+++.++.....+.. . .-.|.. +.+++
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G-------~~~V~~i~~~d~ 290 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-G-------DWEVTSILGWDE 290 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S-------SS-EEEEEEEEC
T ss_pred CCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-C-------ceeecccceEcC
Confidence 6532222222233332 245554 5555 5555556665 5555677776555443 1 134533 67777
Q ss_pred CCCEEE
Q 000697 1331 YQVLLA 1336 (1348)
Q Consensus 1331 dg~~La 1336 (1348)
++..|.
T Consensus 291 ~~~~iy 296 (353)
T PF00930_consen 291 DNNRIY 296 (353)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 776554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.69 Score=53.34 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=120.8
Q ss_pred CchhhHHHHhhchhhHHHHHHHHH-HHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLG-RFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~-~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
.-.|-+.++.-+...+.+-.--++ |-|....-=..--+.-|.+|..++|||++.--+-.--||.. |=+++.|---. +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI-rnisihplNe~-l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI-RNISIHPLNEV-L 328 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH-hhcccccCccc-c
Confidence 344555555555554444332211 22222211123334669999999999987432222223332 22555554333 3
Q ss_pred hhccC-hhhhhhhccCCCCchHHHHHH-HHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Q 000697 540 VKDGG-HAYFIRFLDSMEAYPEQRAMA-AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1348)
Q Consensus 540 ~k~~~-~~yf~~~L~~~~~~~~~r~~~-afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~ 617 (1348)
+-+.| ..-.+++|...++ |.-|.. .=.|=-+-..+.....+-+..+++.+|.+++- |..-+||.=.--|
T Consensus 329 I~dagfl~pLVrlL~~~dn--EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-------D~pvsvqseisac 399 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDN--EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-------DGPVSVQSEISAC 399 (550)
T ss_pred eecccchhHHHHHHhcCCc--hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-------cCChhHHHHHHHH
Confidence 33444 4556778876665 333322 22232233346777888889999999999998 6667788888888
Q ss_pred HHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
+++|--+ +.-|..-.+.++...|++++.|.+-|||--+.-||+.|-+
T Consensus 400 ~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 400 IAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 8887643 3445566888999899999999999999999999999973
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.054 Score=39.93 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|.++.|++++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 7899999999999999999999999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.51 Score=61.12 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=65.8
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
.|+...+++|++++|+.+|..++.|-.+|.|.+||...++.++.+..+..+...|-.+.+ ..++..++++...|. +
T Consensus 124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~--t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGR--TSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEE--eCCCcEEEEccCCCc--e
Confidence 577888899999999999999999999999999999999999998888855556666666 345667888888776 6
Q ss_pred Eec
Q 000697 1109 WKD 1111 (1348)
Q Consensus 1109 Wdl 1111 (1348)
|..
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.79 Score=58.41 Aligned_cols=224 Identities=13% Similarity=0.168 Sum_probs=115.6
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-C-----eEEEEeccC
Q 000697 1046 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-G-----NIRIWKDYD 1113 (1348)
Q Consensus 1046 dg~~Latgs~d------g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G-----~IrIWdl~~ 1113 (1348)
.+.++++|+.+ ..+..||..+++......-.. ...-.+++.. ++.+.++||.| | .+..||...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~--~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS--PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc--ccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC
Confidence 44566666655 357788888764433222221 1234455552 56788889888 3 466677654
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeEEEEE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg-----~IrVWDl~t~~~-~v~~l~~~~~~~VtsL~~ 1187 (1348)
++ |..+......-...+ ++- -+|...++||.|| +|-.||..+.+- .+..+... ..+...
T Consensus 359 --~~------W~~~a~M~~~R~~~~--v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~----r~~~gv 423 (571)
T KOG4441|consen 359 --NQ------WTPVAPMNTKRSDFG--VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR----RSGHGV 423 (571)
T ss_pred --Cc------eeccCCccCccccce--eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc----eeeeEE
Confidence 22 223332222211211 111 1456667777775 477888877650 11112221 122222
Q ss_pred ecCCCCEEEEEeCCC------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-----EEEEE
Q 000697 1188 SQVHGGQLAAGFVDG------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-----IQFLD 1256 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-----I~IWD 1256 (1348)
..-+|.+.++|+.|| +|..||..++.- .............. ++.. ++.+.+.|+.||. |..||
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g-~a~~---~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFG-VAVL---NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccce-EEEE---CCEEEEECCccCCCccceEEEEc
Confidence 233688888888665 577888887651 11112111112222 3332 3778888888873 77788
Q ss_pred cCCCCcceEEEe---cCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEE
Q 000697 1257 IRNHKDAYLTID---AHRGSLSALAVHRHAPIIASGSAKQL-----IKVFS 1299 (1348)
Q Consensus 1257 lr~~~~~v~t~~---~h~~~VtsLa~spdg~~LasgS~Dg~-----I~Vwd 1299 (1348)
..+.. ...+. .....+....+ ++.+.++|+.||. |..||
T Consensus 498 p~~~~--W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 498 PETNQ--WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred CCCCc--eeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcC
Confidence 87652 22222 12222222222 5678888887753 55555
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.22 E-value=5.9 Score=47.81 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=107.0
Q ss_pred CCCEEEEEe-CCCeEEEEeccCCCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEE-E-CC----CeEEEEEC
Q 000697 1093 DVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYAS-G-EV----SSIMLWDL 1164 (1348)
Q Consensus 1093 d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~g-g-~D----g~IrVWDl 1164 (1348)
+.++|+..+ ..+.|.|.|+.+...++++...+..-.-+. ...... -.+..-++++.++++ | .+ |-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P-HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP-HTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE-EEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC-ceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 456777777 678899999987677777774332200010 011110 012333566677776 2 22 56888898
Q ss_pred CCCceeeeeecCCCC--CCeEEEEEecCCCCEEEEEeC--------------------CCeEEEEECCCCCeeeEeecCC
Q 000697 1165 EKEQQMVNPIPSSSD--CSISALTASQVHGGQLAAGFV--------------------DGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1165 ~t~~~~v~~l~~~~~--~~VtsL~~~s~dg~~LvsGs~--------------------DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
++.+ ....+..... ..-..+ ++++..+.+++..- ..++.+||+.+.+ ..+++..-
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDf-w~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg 241 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDF-WYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLG 241 (461)
T ss_dssp TT---EEEE--SB-TT------E-EEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-
T ss_pred cccc-ccceeccCCCCCCCCCCe-EEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecC
Confidence 8877 6666664322 224566 78888888888642 3589999999988 66666322
Q ss_pred CCCCCCeEEEEEecCCCCCE-EEEEECCCcEEEEEc-CCCC---cceEEEecC-----------------CCCeEEEEEe
Q 000697 1223 TQQVERVVGISFQPGLDPAK-IVSASQAGDIQFLDI-RNHK---DAYLTIDAH-----------------RGSLSALAVH 1280 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~-LaSgs~DG~I~IWDl-r~~~---~~v~t~~~h-----------------~~~VtsLa~s 1280 (1348)
........|.|..+-...+ ++.+.-.+.|..|-- ..+. +.+.++... ..-|+.+.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1123455666643311333 444434445555543 3221 222222211 2347899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCC----ceEEEEeccCCccc--------c-cccCCeEEEEEeCCCCEEEEEE
Q 000697 1281 RHAPIIASGS-AKQLIKVFSLEG----EQLGTIRYHHPSFM--------A-QKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1281 pdg~~LasgS-~Dg~I~Vwd~~g----~~l~~i~~~h~~f~--------~-~~~~~Vtslafspdg~~Latgs 1339 (1348)
-|.++|...+ .+|.|+.||++. +.+.++.- -..+. + .-.+...-+..|-||+.|...+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l-GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL-GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE--BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE-CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999877655 589999999653 34444332 11000 0 1112335677888887776553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.075 Score=64.92 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc-CCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVFSL-EGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vt-sLa~spdg~~LasgS~Dg~I~Vwd~-~g~~ 1304 (1348)
..|..+.|+|. -..+|.+..+|.|-+..+. . +.+.++..|...++ +++|.|||++||.|-.||+|++.|. .|..
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 56888999999 9999999999999999888 4 67778887777777 9999999999999999999999994 4555
Q ss_pred EEEEeccCCcccccccCCeEEEEEe
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
+..... .....|+++-|.
T Consensus 97 l~~~~~-------s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLF-------SVETDISKGIWD 114 (665)
T ss_pred eecccc-------ccccchheeecc
Confidence 555211 012467777775
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.2 Score=56.69 Aligned_cols=219 Identities=9% Similarity=0.019 Sum_probs=105.4
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------CeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------G~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
.+..||..+++....-.... + ..-.+++. .++.+.++||.+ ..+..||..+ +. |..+....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~-r~~~~~a~---l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~------W~~~~~m~ 339 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-H-IINYASAI---VDNEIIIAGGYNFNNPSLNKVYKINIEN--KI------HVELPPMI 339 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-c-ccceEEEE---ECCEEEEEcCCCCCCCccceEEEEECCC--Ce------EeeCCCCc
Confidence 56778887664322111111 0 11122333 266777777754 2466777654 22 22222222
Q ss_pred CcccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCceee--eeecCCCCCCeEEEEEecCCCCEEEEEeCCC--
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1202 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg-----~IrVWDl~t~~~~v--~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-- 1202 (1348)
.+.... .++. -++...+.||.++ .+..||..+.+ -. ..++..... . +++. -+|.+.+.|+.++
T Consensus 340 ~~R~~~--~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~-~-~~~~--~~g~IYviGG~~~~~ 411 (557)
T PHA02713 340 KNRCRF--SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSS-Y-GMCV--LDQYIYIIGGRTEHI 411 (557)
T ss_pred chhhce--eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCccccc-c-cEEE--ECCEEEEEeCCCccc
Confidence 111111 1111 1455556666543 48889988765 22 222221111 1 1212 2677888887653
Q ss_pred ---------------------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEE
Q 000697 1203 ---------------------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFL 1255 (1348)
Q Consensus 1203 ---------------------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG------~I~IW 1255 (1348)
.|..||.++.+ -. ............ +++.. ++.+.+.|+.++ .|..|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~-~v~~m~~~r~~~-~~~~~---~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WE-TLPNFWTGTIRP-GVVSH---KDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCe-Ee-ecCCCCcccccC-cEEEE---CCEEEEEeCCCCCCccceeEEEe
Confidence 47778887664 11 111111101111 22222 267777777542 36789
Q ss_pred EcCC-CC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCceE
Q 000697 1256 DIRN-HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ--LIKVFSLEGEQL 1305 (1348)
Q Consensus 1256 Dlr~-~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg--~I~Vwd~~g~~l 1305 (1348)
|..+ .. ..+..+.........+.+ ++++.++|+.|+ .+..||.....-
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 9886 31 222333322222222222 678999999888 667777554433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.049 Score=59.25 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=88.9
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
.+.+.+.+|.|+-++++..+...+.-.. +.+.......+..+++|+.+|.|.+|............... ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc---ccc
Confidence 4555678888888888765411111111 22221223346789999999999999887332111111111 122
Q ss_pred eEE-EEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEE--eCCCcEEEEEcC
Q 000697 1229 VVG-ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASG--SAKQLIKVFSLE 1301 (1348)
Q Consensus 1229 I~s-l~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~~ 1301 (1348)
|.+ +..-. .+.+..+++.||.|+.|++.-. +.+.....|. .++..+.....+++++.. |.|..++.|++.
T Consensus 104 i~~~Ip~~~--~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 104 IDLGIPNGR--DSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceecccccc--ccceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 222 22222 2568999999999999999876 5565556666 566677777777788877 888888888853
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.24 Score=64.15 Aligned_cols=191 Identities=9% Similarity=0.012 Sum_probs=118.4
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC--------CCce-------eeeeecCCCCCCeEEEEEecCCCCEEEE--EeCCCe
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLE--------KEQQ-------MVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGS 1203 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~--------t~~~-------~v~~l~~~~~~~VtsL~~~s~dg~~Lvs--Gs~DG~ 1203 (1348)
++.++.-+.+++++..+.+.|+-.. ...+ ...++..+...+|..+ ...+|+...++ .+.+-.
T Consensus 47 la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~-v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 47 LAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIF-VCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEE-EeccCCceEEEEEecCCce
Confidence 3334455566666666655554322 1110 1133444455556666 33345544333 333447
Q ss_pred EEEEECCCCCeee-------EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEE
Q 000697 1204 VRLYDVRTPDMLV-------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA 1276 (1348)
Q Consensus 1204 VrvwDlr~~~~~v-------~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vts 1276 (1348)
|..||+++-.... +.-+..........++.|+|. -....+.+..|+.|++..+......+..+. .....++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta 203 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA 203 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence 8999998533111 111111122345668888887 455677788899999988875433333333 3456899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE
Q 000697 1277 LAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1338 (1348)
Q Consensus 1277 La~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg 1338 (1348)
++|+|.|+.++.|-..|++.-|...++....+.+ .... ....|.++.|-....+|+.-
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp~~---e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PPVE---ENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EEeccccceeeEecCCCeEEEeecccceeecccC-CCcC---CCcceeEEEEecceeEEEEe
Confidence 9999999999999999999999988887777765 3322 14789999998887777654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.33 Score=58.95 Aligned_cols=118 Identities=19% Similarity=0.020 Sum_probs=85.2
Q ss_pred hhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000697 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 545 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~ 624 (1348)
...++..|.+.+ +..|+=++--|+.+= ...+...++..|+ +++|.||...+-++|..-.+
T Consensus 88 ~~~L~~~L~d~~--~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGP--EGLCAGIQAALGWLG-----------GRQAEPWLEPLLA-------ASEPPGRAIGLAALGAHRHD 147 (410)
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHhcCC-----------chHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccC
Confidence 455666776554 357777776776552 4556778888888 88999999888888873222
Q ss_pred chHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCC
Q 000697 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 704 (1348)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 704 (1348)
..+.+..+|+|.+|.||++++-+||.+-... ....|.....|.
T Consensus 148 ------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-------------------------a~~~L~~al~d~ 190 (410)
T TIGR02270 148 ------------PGPALEAALTHEDALVRAAALRALGELPRRL-------------------------SESTLRLYLRDS 190 (410)
T ss_pred ------------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-------------------------chHHHHHHHcCC
Confidence 2346888999999999999999999875210 011244557899
Q ss_pred ChhhHHHHHHHHHHH
Q 000697 705 SPLVRAEVAVALARF 719 (1348)
Q Consensus 705 sp~VR~e~~~~ls~~ 719 (1348)
+|.||..++..++.+
T Consensus 191 ~~~VR~aA~~al~~l 205 (410)
T TIGR02270 191 DPEVRFAALEAGLLA 205 (410)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.039 Score=60.03 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
+..+++|+.+|.|.+|...... ............|.++...-.++.+..+++.||.||.|++...+.. ... .+|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-g~~---g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG-AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-GYV---GQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccc-hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee-eee---cccc
Confidence 5789999999999999987544 2333222222235555233344568899999999999999877733 222 1233
Q ss_pred -CCeEEEEEecCCCCCEEEEE--ECCCcEEEEEcCC
Q 000697 1227 -ERVVGISFQPGLDPAKIVSA--SQAGDIQFLDIRN 1259 (1348)
Q Consensus 1227 -~~I~sl~~sp~~~g~~LaSg--s~DG~I~IWDlr~ 1259 (1348)
..+......-. ++.++++ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~s--d~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGS--DEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecC--CceEEeeccccchhhhhcchhh
Confidence 34444444443 5666666 6677777777654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.28 Score=54.77 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch-HHHHhhhccCchh
Q 000697 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRADAPA 639 (1348)
Q Consensus 561 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~-~~~~~~~~~~~~~ 639 (1348)
.-.-+|.+++.+....... ..-+-..++..++..+. ++..-+|+.+.-||-.++.... ..+ -...
T Consensus 69 v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~ 134 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPK------ILLE 134 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--H------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHH------HHHH
Confidence 3345666777776655554 22235566777888888 7889999999999999998755 222 1144
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
.+...+++.+|.||..++-.|..++...... ..... .. ..=..+...+...++|+.|.||+.+...+..+
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~-------~~~l~-~~--~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWGSD-------SSVLQ-KS--AFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG---H--HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHccch-------Hhhhc-cc--chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999553200 00000 00 00134556677788999999999999999888
Q ss_pred HHhcc
Q 000697 720 AFGHK 724 (1348)
Q Consensus 720 ~~~~~ 724 (1348)
...|.
T Consensus 205 ~~~~~ 209 (228)
T PF12348_consen 205 YSHFP 209 (228)
T ss_dssp HHHH-
T ss_pred HHHCC
Confidence 65553
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.028 Score=42.02 Aligned_cols=25 Identities=44% Similarity=0.756 Sum_probs=22.4
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.++.+++|++|+||.+++.+|+.+.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.37 Score=58.01 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-----EEEEEeCCCeEEEEeccCCCCce
Q 000697 1045 PFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-----LLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1045 pdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-----~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
.+.+ +|.++.....++--|++.|+.+..++.+. .|+-+.+.|...+. .-+.|-+|..|.-||.+.. ++.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-GKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEeccccc-Ccc
Confidence 3444 34456666778888999999999999888 37666763322222 2345667778888998752 222
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsG 1198 (1348)
.+. ...+|.- .+...+.+.-...+++|++|+.+|.||+||. .+.+....+++- +.+|+.+ -...+|.++++.
T Consensus 418 kl~----~~q~kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hV-dvtadGKwil~T 489 (644)
T KOG2395|consen 418 KLA----VVQSKQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHV-DVTADGKWILAT 489 (644)
T ss_pred eee----eeecccc-ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeE-EeeccCcEEEEe
Confidence 222 1122211 1111111222346899999999999999997 433133344543 4569999 566789888866
Q ss_pred eCCCeEEEEECC
Q 000697 1199 FVDGSVRLYDVR 1210 (1348)
Q Consensus 1199 s~DG~VrvwDlr 1210 (1348)
+ +..+.+-|+.
T Consensus 490 c-~tyLlLi~t~ 500 (644)
T KOG2395|consen 490 C-KTYLLLIDTL 500 (644)
T ss_pred c-ccEEEEEEEe
Confidence 5 5566676665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.1 Score=45.70 Aligned_cols=202 Identities=10% Similarity=0.158 Sum_probs=125.4
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrv 1206 (1348)
+.+....+.+ +.|+|+...|++..+...-.||=...++ .+.+++-..-..--.+.+. .+|++.++--.++.+.+
T Consensus 81 i~g~~~nvS~----LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSS----LTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccc----eeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEEe-cCCEEEEEehhcceEEE
Confidence 3444445665 9999999999999988877777666777 8888774322223344222 34555555556788888
Q ss_pred EECCCCCeeeEe------ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce--EEEecC-------C
Q 000697 1207 YDVRTPDMLVCS------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAH-------R 1271 (1348)
Q Consensus 1207 wDlr~~~~~v~~------~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v--~t~~~h-------~ 1271 (1348)
+.+......... +......+...-.++|.|. ...|..+-+-.-+.||.+......+ .....+ -
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 877654322111 1111112566789999998 6666666666667777766432111 111111 1
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccc--cccCCeEEEEEeCCCCEEEE
Q 000697 1272 GSLSALAVHRH-APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1272 ~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~--~~~~~Vtslafspdg~~Lat 1337 (1348)
..|+++.|++. +.+++-+.+++.+.-.|.+|+.+..+.. +.++.+ .....--+++..++|.+.++
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 25778889875 5577777778888888999998877766 554432 33344566777777754443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1 Score=57.40 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=92.0
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeee--eecCC-CCCCeEEEEEecCCCCEEEEEeCCCe-----EEEEECCC
Q 000697 1146 QSGYLYASGEV------SSIMLWDLEKEQQMVN--PIPSS-SDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRT 1211 (1348)
Q Consensus 1146 ~~~~Ll~gg~D------g~IrVWDl~t~~~~v~--~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~-----VrvwDlr~ 1211 (1348)
++...++||.| ..+..||.++.+ -.. .+... ....+..+ +|.+.++|+.||. |..||.++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCC
Confidence 35566667777 357788888776 333 22211 12112222 6889999999974 77888887
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCC
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG------~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
.+-. ...... ....+.....- +|.+.++|+.+| +|..||..+.. ..+..+..-..... ++.- ++.
T Consensus 406 ~~W~--~va~m~---~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~ 477 (571)
T KOG4441|consen 406 NKWT--PVAPML---TRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGK 477 (571)
T ss_pred Cccc--ccCCCC---cceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCE
Confidence 6511 111111 12222222222 378888888654 46788877652 11111111112222 2222 567
Q ss_pred EEEEEeCCCc-----EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1285 IIASGSAKQL-----IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1285 ~LasgS~Dg~-----I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+.+.||.|+. |..||...+.-..+.. - ....+.+..... +++..++|+.||.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m----~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAP-M----TSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEccc-C----ccccccccEEEE--CCEEEEEecccCc
Confidence 8888887763 6778865544444322 1 111122222222 5667778877764
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=64.21 Aligned_cols=209 Identities=19% Similarity=0.223 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
-++-+-+++-+++++|-.+ ...++.|.++||+.++.. +|-+.++..|.++=..-+..-+++..|..|..=+
T Consensus 308 ~~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr---~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~ 378 (690)
T KOG1243|consen 308 ASDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDR---QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGF 378 (690)
T ss_pred chhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcch---HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhc
Confidence 3466778888888998888 557899999999998754 4446667777766444444567889999999877
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
.+.+. -+|.-..-+++.+.--. ++. -++.+++..+...-. |..+.+|+|..+|||+.-......+
T Consensus 379 ~DTn~--~Lre~Tlksm~~La~kL--~~~-~Ln~Ellr~~ar~q~-------d~~~~irtntticlgki~~~l~~~~--- 443 (690)
T KOG1243|consen 379 LDTNA--TLREQTLKSMAVLAPKL--SKR-NLNGELLRYLARLQP-------DEHGGIRTNTTICLGKIAPHLAASV--- 443 (690)
T ss_pred ccCCH--HHHHHHHHHHHHHHhhh--chh-hhcHHHHHHHHhhCc-------cccCcccccceeeecccccccchhh---
Confidence 66553 55553333333332111 122 356666655555444 7889999999999999876543333
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEV 712 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~ 712 (1348)
........+...+.|+-+--|.|.+++|.....-+ +..+ +-..+...+..+.-|....||..+
T Consensus 444 R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--------------~~~~---va~kIlp~l~pl~vd~e~~vr~~a 506 (690)
T KOG1243|consen 444 RKRVLASAFTRALKDPFVPARKAGVLALAATQEYF--------------DQSE---VANKILPSLVPLTVDPEKTVRDTA 506 (690)
T ss_pred hccccchhhhhhhcCCCCCchhhhhHHHhhccccc--------------chhh---hhhhccccccccccCcccchhhHH
Confidence 12222345666899999999999999998765221 1111 112233444556679999999999
Q ss_pred HHHHHHHHHh
Q 000697 713 AVALARFAFG 722 (1348)
Q Consensus 713 ~~~ls~~~~~ 722 (1348)
-.++..|...
T Consensus 507 ~~~i~~fl~k 516 (690)
T KOG1243|consen 507 EKAIRQFLEK 516 (690)
T ss_pred HHHHHHHHhh
Confidence 8888777644
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=57.28 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=67.7
Q ss_pred hchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc--CCCHHHHHHHHHHHHhh
Q 000697 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS--EPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~--D~sP~VRaa~v~aL~~~ 663 (1348)
...++.+.+-|. ++++++|-=++++||||-.. ..++ .|.+.|. -..||||-+|..|||.+
T Consensus 186 EeaI~al~~~l~-------~~SalfrhEvAfVfGQl~s~----------~ai~-~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 186 EEAINALIDGLA-------DDSALFRHEVAFVFGQLQSP----------AAIP-SLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHhcc-------cchHHHHHHHHHHHhhccch----------hhhH-HHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 345666777777 67999999999999999754 2222 3555554 34899999999999987
Q ss_pred cccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 664 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 664 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
-+. .....|-..++|.+++||++..++|+-.-
T Consensus 248 a~e-------------------------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 248 ADE-------------------------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cCH-------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 611 11234556789999999999999998543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.37 Score=60.48 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=96.2
Q ss_pred hhHHhccCCchhhh-hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHH
Q 000697 505 YVLKLLQTTTPELR-QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEAC 583 (1348)
Q Consensus 505 yvlklL~s~a~elr-~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~ 583 (1348)
-..++|.|....+| --+=+|++.|...+- .+ ..|.-.++.....+ .|.|.+.-+-|=+.-+.-+. .+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS------~~Fp~VVKNVaskn--~EVKkLVyvYLlrYAEeqpd---LA 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VS------LLFPAVVKNVASKN--IEVKKLVYVYLLRYAEEQPD---LA 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHhhccC--HHHHHHHHHHHHHHhhcCCC---ce
Confidence 34578887744333 345789988887753 22 12223333344444 47777655444333222111 11
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
-=-++.+-.-|. ||+|++|+|++=.|+-+ |--.|-.-+...+-++..|++|.||+.++.|+-.+
T Consensus 107 --LLSIntfQk~L~-------DpN~LiRasALRvlSsI-------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 107 --LLSINTFQKALK-------DPNQLIRASALRVLSSI-------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred --eeeHHHHHhhhc-------CCcHHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 111345556677 99999999999888733 21112222222344677899999999999999999
Q ss_pred cccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 000697 664 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 717 (1348)
Q Consensus 664 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls 717 (1348)
-+-.. ++ ...+...+=.++.|.+|+|--.++.++-
T Consensus 171 YsLd~---------------e~----k~qL~e~I~~LLaD~splVvgsAv~AF~ 205 (968)
T KOG1060|consen 171 YSLDP---------------EQ----KDQLEEVIKKLLADRSPLVVGSAVMAFE 205 (968)
T ss_pred hcCCh---------------hh----HHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 84321 11 1112222233558999999998888764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.14 Score=62.73 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
..|.-+.|+|.-+++|++..+|.|.+.... .+.+.++..++ ..++ +++| .+||++|++|-.||+|++.|+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~---~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG---ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC---Cccceeeee--cCCCCEEEEEecCCeEEEEEccC
Confidence 568889999999999999999999999888 78888888666 5666 9999 89999999999999999999976
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.38 E-value=4.9 Score=49.31 Aligned_cols=182 Identities=17% Similarity=0.127 Sum_probs=101.3
Q ss_pred CeEEEEEEeeCCCCEEEEEe---CC-CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CC
Q 000697 1082 GISKLCLVNELDVSLLLVAS---CN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EV 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs---~D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~D 1156 (1348)
.+..-+| ++++..++-.+ .. ..+.++++.. +....+. ...++.. .-.|+|++..++.+. .|
T Consensus 194 ~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~---~~~g~~~-------~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 194 LILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVIL---NFNGNNG-------APAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceecccc--CcCCCceEEEEEecCCCceEEEEeccC--Cccceee---ccCCccC-------CccCCCCCCEEEEEECCC
Confidence 4445555 45555443321 22 4588888876 3333331 1222221 267899999887774 55
Q ss_pred Ce--EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1157 SS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1157 g~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
|. |.++|+.+.. ..+ +... .+ +..--.++++|+.++..+.. | .|.++|...... .+.. .. + ..-..
T Consensus 260 g~~~iy~~dl~~~~-~~~-Lt~~-~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~-~--~~~~~ 330 (425)
T COG0823 260 GSPDIYLMDLDGKN-LPR-LTNG-FG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FS-G--GGNSN 330 (425)
T ss_pred CCccEEEEcCCCCc-cee-cccC-Cc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-cc-C--CCCcC
Confidence 55 6677887766 333 3322 21 33344678999988876653 4 366667666652 2221 11 1 11127
Q ss_pred EEEecCCCCCEEEEEEC-CCc--EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEe
Q 000697 1232 ISFQPGLDPAKIVSASQ-AGD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1290 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~-DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS 1290 (1348)
-.|+|+ |++|+..+. +|. |.+.|+.++.. ++.+. +......-+|.+++..+...+
T Consensus 331 p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 331 PVWSPD--GDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCC--CCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEec
Confidence 788999 888877764 344 66777766532 33332 333344556777877655443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.32 E-value=25 Score=46.17 Aligned_cols=292 Identities=12% Similarity=0.082 Sum_probs=142.6
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC----CEEEEEeC
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV----SLLLVASC 1102 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~----~~L~tgs~ 1102 (1348)
+..|... ..++....+.+...++.++.++.+...+.+.+. +.....+. ....|.|+.+.|-+++ .++++|..
T Consensus 481 ~~~W~~p--~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~-~e~evaCLDisp~~d~~~~s~~~aVG~W 556 (1096)
T KOG1897|consen 481 RSEWRPP--GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKE-FEYEVACLDISPLGDAPNKSRLLAVGLW 556 (1096)
T ss_pred hhcccCC--CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeehe-ecceeEEEecccCCCCCCcceEEEEEee
Confidence 4556544 456666666666678888767777777777655 22222222 1257999998543333 37888877
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec-CCCCCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCS 1181 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~-~~~~~~ 1181 (1348)
+..+.+--... ...... ....+-..--+++. ..++..+..+|+++..||.+.-|-+...+......+ .+-+..
T Consensus 557 s~~~~~l~~~p--d~~~~~---~~~l~~~~iPRSIl-~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~ 630 (1096)
T KOG1897|consen 557 SDISMILTFLP--DLILIT---HEQLSGEIIPRSIL-LTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQ 630 (1096)
T ss_pred cceEEEEEECC--Ccceee---eeccCCCccchhee-eEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCC
Confidence 76655543321 111111 11111111223332 356777788999999999987665443331122221 111111
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEE-EEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG-ISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~s-l~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
-..+..++..+..-+.+..|.-..+|.-+..- ..... .. ..+.. +.|+.+..+..++++. .+.+++..+..-
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL-v~spl-s~----kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i 703 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGKL-VYSPL-SL----KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEI 703 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCcE-EEecc-ch----HHhhhhcccccccCCceEEEec-CCceEEEEecch
Confidence 22333344444433344455555566544321 11111 11 11111 1222221244555554 456777776643
Q ss_pred C-cceEEEecCCCCeEEEEEeCCCCEEEEEeC-----------CCc---EEEEEcCCceEEEEeccCCcccccccCCeEE
Q 000697 1261 K-DAYLTIDAHRGSLSALAVHRHAPIIASGSA-----------KQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC 1325 (1348)
Q Consensus 1261 ~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~-----------Dg~---I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vts 1325 (1348)
+ -.++++.- ......+++++....+++.+. ... ++++| .+....+.. |.--.......|.+
T Consensus 704 qkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD--~nTf~vl~~-hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 704 QKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD--QNTFEVLSS-HEFERNETALSIIS 779 (1096)
T ss_pred hhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec--CCceeEEee-ccccccceeeeeee
Confidence 2 23444443 345677888875555554432 122 33443 333334433 33111223345667
Q ss_pred EEEeCC-CCEEEEEE
Q 000697 1326 LTFHPY-QVLLAAGS 1339 (1348)
Q Consensus 1326 lafspd-g~~Latgs 1339 (1348)
+.|+.| +.+++.|.
T Consensus 780 ~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGT 794 (1096)
T ss_pred eeecCCCceEEEEEE
Confidence 779888 67777775
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.1 Score=51.53 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=110.8
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
.++.|-|+...+ .+..+...+++.+....+......-.+-..++...|+..| ....++-.|++.++ .+..+..+.+.
T Consensus 435 R~n~IGVFk~~d-e~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv 512 (776)
T COG5167 435 RGNSIGVFKNTD-EGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV 512 (776)
T ss_pred eCCeeeeEeccC-CcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccce-eeeEeecCCcc
Confidence 455677887655 2345555444444333222111112255566677776654 55678888999999 89899887654
Q ss_pred CeEEEEEecCC-------CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCc
Q 000697 1181 SISALTASQVH-------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGD 1251 (1348)
Q Consensus 1181 ~VtsL~~~s~d-------g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs~DG~ 1251 (1348)
| + .+.|. ...-+.|-.+..|.-.|.|-....+... .. +..++.-.|+.. ....+++.||..|.
T Consensus 513 -v--V-qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-es---KdY~tKn~Fss~~tTesGyIa~as~kGD 584 (776)
T COG5167 513 -V--V-QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ES---KDYKTKNKFSSGMTTESGYIAAASRKGD 584 (776)
T ss_pred -e--e-ecCCchhHHhcCccceEEeecccceEEecccccCCceeee-ee---hhccccccccccccccCceEEEecCCCc
Confidence 2 1 23332 2233446667777667877443222221 11 122222222221 12568999999999
Q ss_pred EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1252 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
|++||--.. .....+.+-...|..+..+.+|+++++.+. ..+.+-|+
T Consensus 585 irLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 585 IRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 999996533 444556667778999999999997776654 46667774
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.091 Score=44.65 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL 621 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l 621 (1348)
|..|.-++.+|+.+....+.. ..-+..+++..+...|+ |+++.||..+|.+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~-------d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQ-------DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTT-------SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhcC
Confidence 467899999999976665553 33378889999999998 78889999999999975
|
... |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.75 Score=57.24 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=76.8
Q ss_pred HHHHHhccChhhhhhhhhccChhhhhhh----ccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCC
Q 000697 524 IWTKILALDKSCQVDLVKDGGHAYFIRF----LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGS 599 (1348)
Q Consensus 524 Iwa~il~~~~~~q~~l~k~~~~~yf~~~----L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~ 599 (1348)
.+|+|+...+ |.+.=. .+..+++.| +..++. --|--+|-+|+.+.++..+- -.-+..++.++++..|.
T Consensus 65 fla~fv~sl~--q~d~e~-DlV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~-- 136 (892)
T KOG2025|consen 65 FLARFVESLP--QLDKEE-DLVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK-- 136 (892)
T ss_pred HHHHHHHhhh--ccCchh-hHHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh--
Confidence 3456665544 322221 234444444 445554 56778899999998744331 11244555566667777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHH
Q 000697 600 MPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1348)
Q Consensus 600 ~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1348)
|..|-||-=+++||++|-++..+. +..+...+..++ +|||||||.+++..+.
T Consensus 137 -----Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 -----DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999999653331 234444565555 8999999999877654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.2 Score=56.73 Aligned_cols=188 Identities=10% Similarity=0.088 Sum_probs=94.7
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-----eEEEEeccCC
Q 000697 1046 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQ 1114 (1348)
Q Consensus 1046 dg~~Latgs~d------g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~ 1114 (1348)
++...++||.+ ..+..||..+++-.. +..-..+........+ ++.+.+.||.+| .+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~- 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD- 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC-
Confidence 45666667643 346778877654321 1111101112222222 677778888764 477888765
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC-----------------------CeEEEEECCCCcee-
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-----------------------SSIMLWDLEKEQQM- 1170 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D-----------------------g~IrVWDl~t~~~~- 1170 (1348)
+. |..+..........+. +.. ++...+.||.+ ..+..||..+.+ -
T Consensus 377 -~~------W~~~~~mp~~r~~~~~-~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~ 445 (557)
T PHA02713 377 -DK------WKMLPDMPIALSSYGM-CVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WE 445 (557)
T ss_pred -Ce------EEECCCCCcccccccE-EEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-Ee
Confidence 22 2223322222222111 222 34555556543 247788887765 2
Q ss_pred -eeeecCCCCCCeEEEEEecCCCCEEEEEeCCC------eEEEEECCC-CCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000697 1171 -VNPIPSSSDCSISALTASQVHGGQLAAGFVDG------SVRLYDVRT-PDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1171 -v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG------~VrvwDlr~-~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~ 1242 (1348)
+..+...... .+++. .++.+.+.|+.++ .|..||..+ .+ -.. .............+.+ ++.+
T Consensus 446 ~v~~m~~~r~~--~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~-~~~m~~~r~~~~~~~~----~~~i 515 (557)
T PHA02713 446 TLPNFWTGTIR--PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WEL-ITTTESRLSALHTILH----DNTI 515 (557)
T ss_pred ecCCCCccccc--CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeE-ccccCcccccceeEEE----CCEE
Confidence 2222221111 12212 2577778887642 467899887 44 211 1122211222223332 3789
Q ss_pred EEEEECCC--cEEEEEcCCC
Q 000697 1243 IVSASQAG--DIQFLDIRNH 1260 (1348)
Q Consensus 1243 LaSgs~DG--~I~IWDlr~~ 1260 (1348)
.++|+.+| .+..||..+.
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEeeecceeehhhcCcccc
Confidence 99999888 6778888765
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.47 Score=60.85 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHh
Q 000697 516 ELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH 595 (1348)
Q Consensus 516 elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~ 595 (1348)
+-+.-+=.|+|.+...+. -+ .++.-.++.....+ .|+|.++=+=|=..-+..|+-+..| .+.+.+=
T Consensus 35 ~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd--~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRD--VELKRLLYLYLERYAKLKPELALLA-----VNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhh
Confidence 344445677777666543 11 23334455555434 5999999888866655566322222 2233334
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCC
Q 000697 596 LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGV 675 (1348)
Q Consensus 596 l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~ 675 (1348)
|+ |++|++|..++=.|+.+=.. .+-..+...+-.+++|++|.||+.|++|+..+-....
T Consensus 101 l~-------d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------- 159 (757)
T COG5096 101 LQ-------DPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------- 159 (757)
T ss_pred cc-------CCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-------
Confidence 55 89999999998888876432 2334455578899999999999999999999984321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 676 EGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 676 ~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
.+--|.+....+-.++.|.+|.|-+.++.++.-+...
T Consensus 160 ----------~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 ----------DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----------hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1222333444555677899999999999988665444
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.6 Score=52.31 Aligned_cols=238 Identities=18% Similarity=0.154 Sum_probs=152.1
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCC-chhhhhHHHHHHHHHhccChhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~-a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
|.+|-+..+|..+.++.-++.+|-+. ....-++.+....+++|.++++|-+. ..+.. .-+-.++.-|+.++.+++.+
T Consensus 372 GlIPkLv~LL~d~~~~~val~iLy~L-S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaqlm 449 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFREVALKILYNL-SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQLM 449 (708)
T ss_pred CCcHHHHHHhCCCchHHHHHHHHHHh-ccCHhhHHHHhhcchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHHH
Confidence 78888889888888877677665543 34455667666778899999977543 33332 22333344467777766667
Q ss_pred hhccChhhhhhhccC---------------CCC------------------chHHHHHHHHHHHHHhcCC-cchhH--HH
Q 000697 540 VKDGGHAYFIRFLDS---------------MEA------------------YPEQRAMAAFVLAVIVDGH-RRGQE--AC 583 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~---------------~~~------------------~~~~r~~~afiLa~l~~~~-~~gq~--~~ 583 (1348)
++.+|.+-+++.... .+. ..+---+.+=|||.+-+-- +.-.| .+
T Consensus 450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred HhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 777776555433211 010 0111123444555553221 11122 23
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCC--HHHHHHHHHHHH
Q 000697 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ--PEVRASAVFSLG 661 (1348)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s--P~VRaa~v~aL~ 661 (1348)
-+.+++..+..+|... ...+.+..=+++.+|++..+..-|.. -.+.++...|+.+|+... -|.=--++|++.
T Consensus 530 ~~~~llp~L~~~L~~g-----~~~dDl~LE~Vi~~gtla~d~~~A~l-L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPG-----ASEDDLLLEVVILLGTLASDPECAPL-LAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HhCCHHHHHHHHhCCC-----CCChHHHHHHHHHHHHHHCCHHHHHH-HHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 3568888999988732 23456777788999999976555544 356777888999996554 677777899999
Q ss_pred hhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 662 TLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 662 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
+|+--. ++.+.+-.+..+...++.+..|..+.||+-.=..|..+.
T Consensus 604 ~ll~h~--------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 604 QLLFHE--------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHcCh--------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999321 223334345667788999999999999999988887655
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=7.8 Score=46.98 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=119.2
Q ss_pred CeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEecc
Q 000697 1037 GTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDY 1112 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~---dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~ 1112 (1348)
.+..++++++++.+.++.. ++++.+.|..+++.+.+..... .+ ..+++ .++++.++++. .++.|.+.|..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~---~P-~~~a~--~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN---TP-TGVAV--DPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC---Cc-ceEEE--CCCCCeEEEEecCCCeEEEEeCC
Confidence 6889999999998887765 6889999999988888866554 33 77888 78999777665 78899999964
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeee-ecCCCCCCeEEEEEe
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNP-IPSSSDCSISALTAS 1188 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~ 1188 (1348)
. ..... .. ....-.+......+.+++++..+++.... +.+.+.|..++. .... ...... .-..+ ..
T Consensus 191 ~----~~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~-~~~~v-~~ 260 (381)
T COG3391 191 G----NSVVR-GS--VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGSG-APRGV-AV 260 (381)
T ss_pred C----cceec-cc--cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEeccccccC-CCCce-eE
Confidence 4 11110 00 00000011111237888999988887533 689999998887 4443 333332 23444 56
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1189 QVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1189 s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
.|+|..+.+... .+.|.+.|..+.. ..........-...+..+++.+.
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDR-VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCc-eeeeecccccccccceeccceee
Confidence 788888887744 4899999998876 44443333222334566666554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=20 Score=43.45 Aligned_cols=240 Identities=12% Similarity=0.165 Sum_probs=141.7
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEeccCC
Q 000697 1037 GTKTALLQPFSPIVVAADE-NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~-dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.+..+...+++..+.+... ...+.+-+.............. ..-..+.. ++.+. ..++...++.|.+.|....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---~~p~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---VYPAGVAV--NPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---ccccceee--CCCCCeEEEecCCCCeEEEEcCccc
Confidence 5677888888865554442 2245555544222211111111 22345566 45666 4444555688999996441
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~---Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .... ..+. ... .++++++++.++++.. ++.+.+.|..+.+ .......... + ..+ ..+++
T Consensus 107 ~~-~~~~-----~vG~--~P~----~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~-P-~~~-a~~p~ 170 (381)
T COG3391 107 TV-LGSI-----PVGL--GPV----GLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNT-P-TGV-AVDPD 170 (381)
T ss_pred ce-eeEe-----eecc--CCc----eEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCC-c-ceE-EECCC
Confidence 11 1100 1111 112 3888999999999854 6889999999888 7777555432 2 556 67788
Q ss_pred CCEEE-EEeCCCeEEEEECCCCCeeeEeecC--CCCCCCCeEEEEEecCCCCCEEEEEEC-C--CcEEEEEcCCCCcceE
Q 000697 1192 GGQLA-AGFVDGSVRLYDVRTPDMLVCSTRP--HTQQVERVVGISFQPGLDPAKIVSASQ-A--GDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1192 g~~Lv-sGs~DG~VrvwDlr~~~~~v~~~~~--~~~h~~~I~sl~~sp~~~g~~LaSgs~-D--G~I~IWDlr~~~~~v~ 1265 (1348)
|+.++ +-..++.|.+.|..... ..+ -.. ...-...-..+.++|+ |..+..... + +.+...|..++ ....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~-v~~-~~~~~~~~~~~~P~~i~v~~~--g~~~yV~~~~~~~~~v~~id~~~~-~v~~ 245 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNS-VVR-GSVGSLVGVGTGPAGIAVDPD--GNRVYVANDGSGSNNVLKIDTATG-NVTA 245 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcc-eec-cccccccccCCCCceEEECCC--CCEEEEEeccCCCceEEEEeCCCc-eEEE
Confidence 88554 44578999999977665 221 100 0111234567888998 665544443 3 58888898876 3333
Q ss_pred E-EecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 000697 1266 T-IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG 1302 (1348)
Q Consensus 1266 t-~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~g 1302 (1348)
. ..........+.++|+|..+.+.. ..+.+.+.|...
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 3 221111456789999999887774 447888888443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.24 Score=63.95 Aligned_cols=108 Identities=13% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQL 1305 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l 1305 (1348)
..+.+.+.. +..++.|+..|.|-..|.+..-.+...-..-.++|++++|+.+|++++.|-.+|.|.+||.. ++.+
T Consensus 90 ~~v~s~a~~----~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 90 AGVISSAIV----VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cceeeeeee----eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 344444443 56899999999999999885312222222336789999999999999999999999999964 5777
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
..+.. |. .....|-.+.+..++..+.++...|.
T Consensus 166 ~~i~e-~~----ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 KVITE-HG----APVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeee-cC----CccceEEEEEEeCCCcEEEEccCCCc
Confidence 76665 43 11223444444555566777766664
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.26 Score=61.76 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=108.7
Q ss_pred HHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh-hhhhhc
Q 000697 466 VLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ-VDLVKD 542 (1348)
Q Consensus 466 vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q-~~l~k~ 542 (1348)
+.++|-|.- -.+.|+.-+---|.-|.-+ --.||-|+|...+...|.|.. ||+. .+.+-..-| ..|++
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkL-VyvY--LlrYAEeqpdLALLS- 109 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKL-VYVY--LLRYAEEQPDLALLS- 109 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHH-HHHH--HHHHhhcCCCceeee-
Confidence 456677743 4445655322233233322 136999999999999998864 4544 122212222 12333
Q ss_pred cChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 543 ~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
+++|.+-|.+++ ++.|+|+.=+|+-|= .-.+..-++-..-+... |+.|-||+-+++++-+|.
T Consensus 110 --IntfQk~L~DpN--~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~-------D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 110 --INTFQKALKDPN--QLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVT-------DPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred --HHHHHhhhcCCc--HHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhc-------CCcHHHHHHHHHhhHHHh
Confidence 689999998877 599999999998872 11122222222223334 899999999999999999
Q ss_pred ccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.--++-+. .+.+.+-.||+|.+|.|--++|+|+-...
T Consensus 172 sLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 172 SLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred cCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 76555443 34456678999999999999999988765
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=8.9 Score=43.85 Aligned_cols=169 Identities=9% Similarity=0.142 Sum_probs=110.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..+.++.|+|+.+.|.+..+...-.||=..+|+.+.++.-... .....+.|+ .++.+.++--.++.+.++.+....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYI--GGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--CChhHeEEe--cCCEEEEEehhcceEEEEEEcCCc
Confidence 3499999999999998888888888887778999988764321 245577884 577777777788888888875522
Q ss_pred CceeEEe---eeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-e-eeeecCCC------CCCeEE
Q 000697 1116 DKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-M-VNPIPSSS------DCSISA 1184 (1348)
Q Consensus 1116 ~~~~lvs---~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~-v~~l~~~~------~~~Vts 1184 (1348)
....... +.........+-.+ ++|++.++.++++-.-+-+.||.+..... . +.....+. -..|.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEG----lA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEG----LAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCCCcCcee----eecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 2111111 01111111333444 89999999999998777777776553320 0 00000110 012666
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
+.+....+.+++-+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 7666677888888989999888887755
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.092 Score=39.20 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.6
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 588 ~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
++..+++.++ |++|+||.+++.|||.+.+
T Consensus 1 llp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 3567888898 9999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.62 Score=51.99 Aligned_cols=185 Identities=22% Similarity=0.217 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
+..|.|||.-|-.-++.+. .-++.|-.-+-...+|.=++|.+.. .|+. .-.+.....|
T Consensus 19 l~~r~rALf~Lr~l~~~~~-----------i~~i~ka~~d~s~llkhe~ay~LgQ------~~~~-----~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA-----------IKAITKAFIDDSALLKHELAYVLGQ------MQDE-----DAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCChHH-----------HHHHHHhcccchhhhccchhhhhhh------hccc-----hhhHHHHHHh
Confidence 5789999987666664433 3455555555455677777888732 2222 2344566777
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccc-------
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF------- 625 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~------- 625 (1348)
.+.+..|-.|-=++++|+.+- .....+++-++.+ ||..+||--+-+++.++=...
T Consensus 77 ~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~-------dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIK-------DPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred cccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhc-------CCccccchHHHHHHHHHHHhhccccccc
Confidence 776666778888999998885 3344555555555 777777777777777663110
Q ss_pred ---------------------------------hHHHH-hhhcc----CchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 626 ---------------------------------TEAQT-IGRRA----DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 626 ---------------------------------~~~~~-~~~~~----~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
+.-+. +.++. .+...|..-+.|+|++.|-++.|.||.+-+.-
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ 218 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA 218 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh
Confidence 00000 11111 11225666777888889998888888876321
Q ss_pred cCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 668 FDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
.+ ..+...|.. .-..||||.|++.+|..+.
T Consensus 219 ------------------ai---~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 219 ------------------AI---PSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred ------------------hh---HHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 00 111122222 2346999999999998654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=17 Score=42.65 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=115.4
Q ss_pred CCCC-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1092 LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1092 ~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
++.. ++.+--..+.|.-|+..+ ++.+.. .+...+.+ ...-..++.|+++ ..| ++++|.+++. .
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~-------~~p~~~~~----~~~~d~~g~Lv~~-~~g-~~~~~~~~~~-~ 97 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPET--GKKRVF-------PSPGGFSS----GALIDAGGRLIAC-EHG-VRLLDPDTGG-K 97 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCc--CceEEE-------ECCCCccc----ceeecCCCeEEEE-ccc-cEEEeccCCc-e
Confidence 3444 444445567777777754 322221 11222222 2222344455544 333 5566665444 3
Q ss_pred eeeec----CCCCCCeEEEEEecCCCCEEEEEeC-----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1171 VNPIP----SSSDCSISALTASQVHGGQLAAGFV-----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1171 v~~l~----~~~~~~VtsL~~~s~dg~~LvsGs~-----------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
+..+. ......-+.+ ...++|.+.++... -|.|+.+|. .+. ..+... ++-..-+.|+|+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~-~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~---~~~~~~NGla~S 171 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDG-VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLD---DDLTIPNGLAFS 171 (307)
T ss_pred eEEeccccCCCCcCCCCce-eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeec---CcEEecCceEEC
Confidence 22221 1111223344 34566665554333 134555554 222 333322 222456789999
Q ss_pred cCCCCCEEEEEEC-CCcEEEEEcCC--C---Cc-ceEEEecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCceEEE
Q 000697 1236 PGLDPAKIVSASQ-AGDIQFLDIRN--H---KD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQ-LIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~-DG~I~IWDlr~--~---~~-~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg-~I~Vwd~~g~~l~~ 1307 (1348)
|+ ++.++.+.. .+.|.-|++.. + .. ....+....+..-.++...+|.+.+++-.+| .|.+|+.+|+.+..
T Consensus 172 pD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 172 PD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred CC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEE
Confidence 99 766666654 47788887752 1 01 1222223456666788888898886555554 89999999999999
Q ss_pred EeccCCcccccccCCeEEEEEeC-CCCEEEEEE
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHP-YQVLLAAGS 1339 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafsp-dg~~Latgs 1339 (1348)
++. .. ..+++++|-- +.+.|...+
T Consensus 250 i~l-P~-------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 250 IKL-PV-------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEC-CC-------CCCccceEeCCCcCEEEEEe
Confidence 987 42 4678888853 444444433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.62 Score=51.97 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhch-HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH-HHHhh---h
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGL-IHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE-AQTIG---R 633 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~-~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~-~~~~~---~ 633 (1348)
.-.|+-+.-+|-.+|+... ....+ ...+...++ +.+|.+|.-++-+|..++..... ..... .
T Consensus 108 ~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~-------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCS------YSPKILLEILSQGLK-------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 4677777778888886655 12233 666667777 88999999999999999988772 11111 1
Q ss_pred ccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 634 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
-..+...+..+++|+.|+||+++--++..|.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 1345567889999999999999988888886
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.12 Score=51.15 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000697 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 546 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~ 624 (1348)
+..+++|..++ .+..-+.+|.=|+.+++.||.|+..+-+.++-..+..+++ .++|+||--|++|+.+|+..
T Consensus 46 k~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 46 KKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHh
Confidence 35566665444 3788899999999999999999999999999999999999 88999999999999998753
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.53 Score=61.70 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=111.5
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh--hccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcch
Q 000697 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV--KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG 579 (1348)
Q Consensus 502 ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~--k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~g 579 (1348)
+|+++-++|||+.--.|.-.+--++.|-.. |+.... =+..+...++.|++++ |.-|..||++++++--|+...
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcHH
Confidence 478888999988555554433344444432 332221 2556778888888877 599999999999999998765
Q ss_pred hHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh-hhhhhccCCCHHHHHHHHH
Q 000697 580 QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA-IYVPLLSEPQPEVRASAVF 658 (1348)
Q Consensus 580 q~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~-~l~~ll~D~sP~VRaa~v~ 658 (1348)
=.--....+...++..+.+ ..+|.|.+-++-||=.|.++.+...-..+=+.+.+ ++..|+..+.|.||..+|.
T Consensus 424 iqk~~~e~l~~aL~~~ld~------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDS------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHhccHHHHHHhcc------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3333455566666666663 56899999999999999988776655555555555 6777889999999999999
Q ss_pred HHHhhcccC
Q 000697 659 SLGTLLDIG 667 (1348)
Q Consensus 659 aL~~~i~~~ 667 (1348)
|+|.....-
T Consensus 498 aIasvA~AA 506 (1075)
T KOG2171|consen 498 AIASVADAA 506 (1075)
T ss_pred HHHHHHHHH
Confidence 999887543
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.27 Score=47.57 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh
Q 000697 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631 (1348)
Q Consensus 561 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~ 631 (1348)
.|.-+.=+||.+|-+.+..|....+.+.+..++..-.-+ +.+|.+|.|+++|+=.|++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356677789999999999999998888888887764421 779999999999999999999999874
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.37 Score=58.58 Aligned_cols=123 Identities=24% Similarity=0.205 Sum_probs=83.8
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
+...|+..|...+. ++.+..+++.|... . ....++.++..|. |+++.||..++-+||.+-.
T Consensus 55 a~~~L~~aL~~d~~-~ev~~~aa~al~~~---~--------~~~~~~~L~~~L~-------d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 55 ATELLVSALAEADE-PGRVACAALALLAQ---E--------DALDLRSVLAVLQ-------AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHHHhhCCC-hhHHHHHHHHHhcc---C--------ChHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCc
Confidence 34566667743332 56777666555222 0 1123788888888 7888899999999996542
Q ss_pred cchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1348)
. .+...|+.+|+|..|.||++++-+++..-.. -...++..+.|
T Consensus 116 ~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~--------------------------~~~~L~~~L~d 158 (410)
T TIGR02270 116 R-----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD--------------------------PGPALEAALTH 158 (410)
T ss_pred h-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------------------------hHHHHHHHhcC
Confidence 2 2234688999999999999999888864300 01235555679
Q ss_pred CChhhHHHHHHHHHHHHHh
Q 000697 704 GSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 704 ~sp~VR~e~~~~ls~~~~~ 722 (1348)
.+|.||++++..++++-..
T Consensus 159 ~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 159 EDALVRAAALRALGELPRR 177 (410)
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999999876543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=52.44 Aligned_cols=185 Identities=24% Similarity=0.279 Sum_probs=123.7
Q ss_pred CCchhhHHHHhhchhhHHH--HHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhh
Q 000697 460 PEQLPIVLQVLLSQCHRFR--ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1348)
Q Consensus 460 p~~lP~vLq~LlS~~~rlr--al~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~ 537 (1348)
+...+.++++|.+....+| |...|+.+= ..-.+|-..++|.+.....|..+++.+..+-
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 4678889999988644444 443322211 1234688889999888888888888442221
Q ss_pred hhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCC----------
Q 000697 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTE---------- 607 (1348)
Q Consensus 538 ~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~---------- 607 (1348)
.+..+..++..|.. +...-.|.-++..|+.+- ....+.-++..++ ++.
T Consensus 103 ---~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~-----------~~~a~~~l~~~l~-------~~~~~~a~~~~~~ 160 (335)
T COG1413 103 ---DPEAVPPLVELLEN-DENEGVRAAAARALGKLG-----------DERALDPLLEALQ-------DEDSGSAAAALDA 160 (335)
T ss_pred ---ChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcC-----------chhhhHHHHHHhc-------cchhhhhhhhccc
Confidence 12234556666664 222578999999998883 2333556666666 322
Q ss_pred H--HHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHH
Q 000697 608 P--LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDE 685 (1348)
Q Consensus 608 p--~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~ 685 (1348)
+ .+|..++-.|+.+-.. .....+..++.|....||.+++.+|+.+.+. .
T Consensus 161 ~~~~~r~~a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~-----------------~- 211 (335)
T COG1413 161 ALLDVRAAAAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSE-----------------N- 211 (335)
T ss_pred hHHHHHHHHHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc-----------------h-
Confidence 2 4777777777766532 2334688899999999999999999998722 0
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 686 KIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 686 ~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
..+...+.....|.+..||...+..++..
T Consensus 212 -----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 212 -----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred -----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 23345566778899999999999888764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.05 E-value=6.1 Score=46.36 Aligned_cols=192 Identities=16% Similarity=0.089 Sum_probs=101.6
Q ss_pred EEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1141 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
-.|.++.+.|+-.. ..+.|.-||..++. ...+..... +.++......+. |+++ .. .+.++|...+.......
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~--~~~~~~p~~--~~~~~~~d~~g~-Lv~~-~~-g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK--KRVFPSPGG--FSSGALIDAGGR-LIAC-EH-GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc--eEEEECCCC--cccceeecCCCe-EEEE-cc-ccEEEeccCCceeEEec
Confidence 34567777666664 67889999998775 333332222 455534444443 3333 33 35666765554211111
Q ss_pred cCCCC-CCCCeEEEEEecCCCCCEEEEEEC-----C----CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE
Q 000697 1220 RPHTQ-QVERVVGISFQPGLDPAKIVSASQ-----A----GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1220 ~~~~~-h~~~I~sl~~sp~~~g~~LaSgs~-----D----G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg 1289 (1348)
....+ .....+.+.+.|+ |.+.++... . ..-.+|-+...+..++.+..+-..-+.|+||||++.|...
T Consensus 103 ~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 11111 1245667888888 776665443 0 0113444442224555555555566789999999877666
Q ss_pred -eCCCcEEEEEcC---CceE----EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC-eEEEcC
Q 000697 1290 -SAKQLIKVFSLE---GEQL----GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA-CVSIHS 1348 (1348)
Q Consensus 1290 -S~Dg~I~Vwd~~---g~~l----~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg-~I~IWd 1348 (1348)
+..+.|.-|++. +..- ..... ...+..-.++...+|.+.+++..+| .|.+|+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-------~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFD-------EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEcc-------CCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 445778777754 2111 11111 1124445566666666665444443 565553
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.3 Score=53.77 Aligned_cols=168 Identities=14% Similarity=0.262 Sum_probs=106.6
Q ss_pred CHHHHHHHHhcCchhhhHHhccCCchh-hhhHHHHHHHHHhccC------hhhhhhhhhccChhhhhhhccC-CCCchHH
Q 000697 490 GPWAVDLALSVGIFPYVLKLLQTTTPE-LRQILVFIWTKILALD------KSCQVDLVKDGGHAYFIRFLDS-MEAYPEQ 561 (1348)
Q Consensus 490 ~~wAv~lal~~gifpyvlklL~s~a~e-lr~~~~FIwa~il~~~------~~~q~~l~k~~~~~yf~~~L~~-~~~~~~~ 561 (1348)
.+-++......+++|-++.+++....| .=.+++.|+--++... ..+...++..++.+ .+..|+. .=..+++
T Consensus 217 ~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL 295 (429)
T cd00256 217 NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDL 295 (429)
T ss_pred cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHH
Confidence 333555555678899999999865443 3346777776777642 12333444334433 3333431 1011233
Q ss_pred HHHHHHHHHHHhcCC---------------------cch-----------hHHHHhhchHHHHHHhhcCCCCCCCCCCHH
Q 000697 562 RAMAAFVLAVIVDGH---------------------RRG-----------QEACIEAGLIHVCLKHLQGSMPNDAQTEPL 609 (1348)
Q Consensus 562 r~~~afiLa~l~~~~---------------------~~g-----------q~~~~~~~~~~~~~~~l~~~~~~~~d~~p~ 609 (1348)
.....++-..+=+.+ |.. +..--+-.++.++.++|.. ..+|.
T Consensus 296 ~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~d~~ 369 (429)
T cd00256 296 TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SVDPI 369 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CCCcc
Confidence 333333332221111 111 1111123455677788853 45788
Q ss_pred HHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 610 FLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 610 ~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.-+-+|.=+|.|+..+|++|.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999888889899999999999999999999999987
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.5 Score=55.58 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=127.2
Q ss_pred HHHHhhc--hhhHHHHHHHHHHHhcCCHH-HHHH-HH--hcCchhhhHHhccC-------CchhhhhHHHHHHHHHhccC
Q 000697 466 VLQVLLS--QCHRFRALVLLGRFLDMGPW-AVDL-AL--SVGIFPYVLKLLQT-------TTPELRQILVFIWTKILALD 532 (1348)
Q Consensus 466 vLq~LlS--~~~rlral~ll~~Fld~~~w-Av~l-al--~~gifpyvlklL~s-------~a~elr~~~~FIwa~il~~~ 532 (1348)
-+++|.+ ..+|+-+|.++.|+++-++- +... .+ ++| |.+.-+||.+ ++.+.+..++=|++.|+...
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 4566666 46999999999999998882 2211 22 345 7888899997 56788889999999999943
Q ss_pred hhhh-hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHH
Q 000697 533 KSCQ-VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611 (1348)
Q Consensus 533 ~~~q-~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R 611 (1348)
.... .+. .+-++.++.++..... .+.-.-|.-||..+. .++.|+.+.++.+.+..+++.+.+ .+...
T Consensus 89 ~~a~~~~~--~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--------~~~~~ 156 (543)
T PF05536_consen 89 ELASSPQM--VSRIPLLLEILSSSSD-LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--------QSFQM 156 (543)
T ss_pred hhhcCHHH--HHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--------CcchH
Confidence 2221 112 2346778888865443 467778888999998 999999999999999999999873 34444
Q ss_pred HHHHHHHHHhhccchHHHHhhhc---cCchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 612 QWLCLCLGKLWEDFTEAQTIGRR---ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 612 ~w~~l~Lg~l~~~~~~~~~~~~~---~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
--++-+|..++.....--|..-. ..+...+........-+-+-+++-.|+.|+...
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 45555555555443321111111 122234555555556677778888888888553
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.1 Score=53.84 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=119.7
Q ss_pred hhchhhHHHHHH-HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhh
Q 000697 470 LLSQCHRFRALV-LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1348)
Q Consensus 470 LlS~~~rlral~-ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf 548 (1348)
+..|.+=+|+.. +|.++-. .+....-.+..||+++.+++|++...|+.-.++=.+ +=|++++.++....+.+.....
T Consensus 259 ~~kQeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 259 IRKQEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHH
Confidence 445666666555 5444442 234445557889999999999988878754333333 4567778888899999999999
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH
Q 000697 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1348)
Q Consensus 549 ~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~ 628 (1348)
.++|+..+. +++..+.=+|--+. ..+..+..-++.|++..+..+|. + +..|..++-.|.++-.+ +++
T Consensus 337 ~kLl~s~~~--~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~-------d--~~~~~val~iLy~LS~d-d~~ 403 (708)
T PF05804_consen 337 LKLLPSENE--DLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLK-------D--PNFREVALKILYNLSMD-DEA 403 (708)
T ss_pred HHHhcCCCH--HHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhC-------C--CchHHHHHHHHHHhccC-Hhh
Confidence 999987653 56665555554443 34445667789999999999998 3 34566566666666654 566
Q ss_pred HHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHHhhc
Q 000697 629 QTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 629 ~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~~~i 664 (1348)
|.+....+....+..++ .-+.++|..+++-++-.+.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 66554444444566554 5567778777655555554
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.23 E-value=8.8 Score=43.77 Aligned_cols=233 Identities=16% Similarity=0.129 Sum_probs=141.2
Q ss_pred CCchhhHHHHhhc---hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000697 460 PEQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1348)
Q Consensus 460 p~~lP~vLq~LlS---~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q 536 (1348)
|++|.-++.+|.+ +.-+-+|+..+++. ..-|-+....-..|+.+-+.++|.+|.++.|.-++-.+.- ++.....|
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N-ls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN-LSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh-cCCChhhH
Confidence 5788888888885 33566788888884 3446777777789999999999999998888655544443 34443333
Q ss_pred hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000697 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1348)
Q Consensus 537 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l 616 (1348)
. -++.-+-..|-..+..+-..+.|.+=+- .|..+.- -...|.. + .+.+..++.+|. ..+..+|-=+.-
T Consensus 89 ~-~Ik~~i~~Vc~~~~s~~lns~~Q~agLr-lL~nLtv-~~~~~~~-l-~~~i~~ll~LL~-------~G~~~~k~~vLk 156 (254)
T PF04826_consen 89 E-QIKMYIPQVCEETVSSPLNSEVQLAGLR-LLTNLTV-TNDYHHM-L-ANYIPDLLSLLS-------SGSEKTKVQVLK 156 (254)
T ss_pred H-HHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHccCC-Ccchhhh-H-HhhHHHHHHHHH-------cCChHHHHHHHH
Confidence 2 3444333444444443333345533222 2222211 1222333 2 234556778888 667778877777
Q ss_pred HHHHhhccchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhccc---CcCCCCCCCCCCCCCchHH--H-HHH
Q 000697 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDI---GFDSCRDGVEGDEECDDDE--K-IRA 689 (1348)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~---~~~~~~~~~~~~~~~~~~~--~-~~~ 689 (1348)
+|..|=.+.+.++.. +...+...++.+++.. .-++.-.++..+..+-.. ....+. ..++..+. . .+.
T Consensus 157 ~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~-----~~~~~~~~L~~~~~e 230 (254)
T PF04826_consen 157 VLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV-----QDDFSEDSLFSLFGE 230 (254)
T ss_pred HHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec-----cccCCchhHHHHHcc
Confidence 888887776666654 4445777888888654 677777777777766422 111111 12222221 2 223
Q ss_pred HHHHHHHHhhhccCCChhhHHHH
Q 000697 690 EISIIRSLLTVVSDGSPLVRAEV 712 (1348)
Q Consensus 690 e~~~~~~ll~~~~D~sp~VR~e~ 712 (1348)
+..++.+|..+...+.|+||..+
T Consensus 231 ~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 231 SSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHHcCCCHHHhhhc
Confidence 44478889998899999999865
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.19 E-value=28 Score=46.06 Aligned_cols=121 Identities=7% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCC-----CeEEEEEEee--------------CCCCEEEEEeCCCeEE
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK-----GISKLCLVNE--------------LDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~-----~ItsL~f~ns--------------~d~~~L~tgs~DG~Ir 1107 (1348)
+..|.+++.++.|.-.|.++|+.+.++........ ....+.+... ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788888889999988888765432111 1233444211 1345788888999988
Q ss_pred EEeccCCCCceeEEee------ee-cccCCCC---cccccceEEEEecCCCeEEEEEC----------CCeEEEEECCCC
Q 000697 1108 IWKDYDQKDKQKLVTA------FS-SIQGHKP---GVRCSNVVVDWQQQSGYLYASGE----------VSSIMLWDLEKE 1167 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~------~~-~l~~h~~---~V~si~~~v~ws~~~~~Ll~gg~----------Dg~IrVWDl~t~ 1167 (1348)
-.|..+ ++...... ++ .+..... .+++..++ .++.+++|+. +|.|+-+|++++
T Consensus 274 ALDA~T--Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-----~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADT--GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-----AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCC--CCEEEEecCCCceeeecccCcCCCcccccccCCEE-----ECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 888766 43221100 00 0001110 11121111 2567777742 588999999999
Q ss_pred ceeeeeec
Q 000697 1168 QQMVNPIP 1175 (1348)
Q Consensus 1168 ~~~v~~l~ 1175 (1348)
+ .+-.+.
T Consensus 347 k-l~W~~~ 353 (764)
T TIGR03074 347 A-LVWAWD 353 (764)
T ss_pred c-EeeEEe
Confidence 9 666554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=52 Score=43.24 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=120.3
Q ss_pred CeEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-C-----Ce
Q 000697 1037 GTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-N-----GN 1105 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs-----~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-D-----G~ 1105 (1348)
.+..+.++|||++|+.+. +...|+|.|+.+|+.+...-... . ..++| .+|++.|+.+.. + ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~-~~~~w--~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----E-PSFVW--ANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----c-eEEEE--eeCCCEEEEEEecCCCCCCCE
Confidence 467788999999888654 23358888998775432211111 2 45788 567765554433 2 25
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEE-ecCCCeEEEEE---CCCeEEEEECCC--CceeeeeecCCCC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASG---EVSSIMLWDLEK--EQQMVNPIPSSSD 1179 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~w-s~~~~~Ll~gg---~Dg~IrVWDl~t--~~~~v~~l~~~~~ 1179 (1348)
|..+++.+...+.+++ +.+...... + ..+ +.++.+++..+ .++.+.+++... +. ....+....+
T Consensus 201 v~~h~lgt~~~~d~lv-----~~e~~~~~~---~-~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 270 (686)
T PRK10115 201 VWRHTIGTPASQDELV-----YEEKDDTFY---V-SLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRKD 270 (686)
T ss_pred EEEEECCCChhHCeEE-----EeeCCCCEE---E-EEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCCC
Confidence 6667776532233333 222222111 1 233 33677766653 346789998532 22 2222222222
Q ss_pred CCeEEEEEecCCCCEEEEEeCC----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1180 CSISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~D----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
. ...+ .... +.|..-+.. ..|...++.........+ ... ....|..+.+. . ...+++...+|.-+++
T Consensus 271 ~-~~~~--~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~-~~~~i~~~~~~-~--~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 271 H-EYSL--DHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPR-ENIMLEGFTLF-T--DWLVVEERQRGLTSLR 341 (686)
T ss_pred C-EEEE--EeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEE-CCC-CCCEEEEEEEE-C--CEEEEEEEeCCEEEEE
Confidence 2 3333 1222 333333322 234444554221111222 221 12367788876 3 5677777778876665
Q ss_pred EcCCCCcceEEEe-cCCCCeEEEEEe--CCCC-EEEEEeC---CCcEEEEEcCCceEEEEe
Q 000697 1256 DIRNHKDAYLTID-AHRGSLSALAVH--RHAP-IIASGSA---KQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~-~h~~~VtsLa~s--pdg~-~LasgS~---Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
-+......+..+. .....+..+.++ +++. ++++.++ -+.+..+|..+.....+.
T Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 342 QINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred EEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 5443222344433 222233434444 3333 4444332 356777886544444443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.89 E-value=19 Score=43.58 Aligned_cols=232 Identities=11% Similarity=0.139 Sum_probs=101.6
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----cEEEEeeCCCCC-CCCe---EEEEEEeeCCCCEEEEEe--CC----CeEEEEe
Q 000697 1046 FSPIVVAAD-ENERIKIWNYEED----TLLNSFDNHDFP-DKGI---SKLCLVNELDVSLLLVAS--CN----GNIRIWK 1110 (1348)
Q Consensus 1046 dg~~Latgs-~dg~I~VWd~~t~----~~l~~~~~h~~~-~~~I---tsL~f~ns~d~~~L~tgs--~D----G~IrIWd 1110 (1348)
+.++|++.+ ..+.|.|.|+.+. +..+.++..... ...+ ..+.- -++|++++++= .+ |-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc--lp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC--LPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee--cCCccEEEEeccCCCCCCCCcEEEEc
Confidence 445777766 7889999998843 444555421100 0011 11111 25777887752 22 4566776
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--------------------CCeEEEEECCCCcee
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------------------VSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--------------------Dg~IrVWDl~t~~~~ 1170 (1348)
-++ .++...|..-.+... .++-+-|++..+.++++.. ...+.+||+.+.+ .
T Consensus 164 ~~t----f~v~g~We~~~~~~~----~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~ 234 (461)
T PF05694_consen 164 GET----FEVKGRWEKDRGPQP----FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-L 234 (461)
T ss_dssp TTT------EEEE--SB-TT----------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-E
T ss_pred Ccc----ccccceeccCCCCCC----CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-E
Confidence 543 344444433222222 2233777887777777532 3579999999999 8
Q ss_pred eeeecCCCCCC-eEEEEE-ecCCCCE-EEEEeCCCeEEEEEC-CCCCe---eeEeecCC--------------CCCCCCe
Q 000697 1171 VNPIPSSSDCS-ISALTA-SQVHGGQ-LAAGFVDGSVRLYDV-RTPDM---LVCSTRPH--------------TQQVERV 1229 (1348)
Q Consensus 1171 v~~l~~~~~~~-VtsL~~-~s~dg~~-LvsGs~DG~VrvwDl-r~~~~---~v~~~~~~--------------~~h~~~I 1229 (1348)
++++....+.. ...|.+ +.|+..+ |+.+...++|..|-. ..++- .+..+... ..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88887654431 333422 2333333 444444555655544 33220 11111000 0002347
Q ss_pred EEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCcceEEEecC------------------CCCeEEEEEeCCCCEEEEEe
Q 000697 1230 VGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH------------------RGSLSALAVHRHAPIIASGS 1290 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h------------------~~~VtsLa~spdg~~LasgS 1290 (1348)
+.|.++-+ .++|...+ ..|.|+.||+.....+..+-+.. .+....+..|-||+.|...+
T Consensus 315 tDI~iSlD--DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 315 TDILISLD--DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TT--S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeEEEccC--CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 89999998 77766555 68999999999765554433211 12346778888888766543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.82 Score=56.53 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=96.1
Q ss_pred hhhhhhhhccChh----hhhhhccCCC-CchHHHHHHHHHHHHHhcCCcchhHHHHhhchH----HHHHHhhcCCCCCCC
Q 000697 534 SCQVDLVKDGGHA----YFIRFLDSME-AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLI----HVCLKHLQGSMPNDA 604 (1348)
Q Consensus 534 ~~q~~l~k~~~~~----yf~~~L~~~~-~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~----~~~~~~l~~~~~~~~ 604 (1348)
+.|..+.+-+.|. |.+.+|-... .....|+.+-++| +|.-.|.+--+..+.. .-|+.-|-
T Consensus 32 ~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlL----KNnvr~~~~~~~~~~~~yiKs~~l~~lg------- 100 (885)
T KOG2023|consen 32 NVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLL----KNNVRGHYNSIPSEVLDYIKSECLHGLG------- 100 (885)
T ss_pred HHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhH----hccccccccCCChHHHHHHHHHHHhhcc-------
Confidence 3444455544454 4444443221 1246688887766 6655554433333322 34566666
Q ss_pred CCCHHHHHHHHHHHHHhhccc----------------------------hHHHHhh------hcc--------Cchhhhh
Q 000697 605 QTEPLFLQWLCLCLGKLWEDF----------------------------TEAQTIG------RRA--------DAPAIYV 642 (1348)
Q Consensus 605 d~~p~~R~w~~l~Lg~l~~~~----------------------------~~~~~~~------~~~--------~~~~~l~ 642 (1348)
|++|++|+-.-+.++++.... ..-+.++ ++. -...+++
T Consensus 101 d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl 180 (885)
T KOG2023|consen 101 DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFL 180 (885)
T ss_pred CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHH
Confidence 777888887777776665321 0001111 111 0122777
Q ss_pred hhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 643 PLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 643 ~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
...++++|-.|+.++.++.+||-.... .=.++++ .....+..+.+|..|+|||.+-.++..+...
T Consensus 181 ~f~~h~spkiRs~A~~cvNq~i~~~~q--------------al~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 181 QFFKHPSPKIRSHAVGCVNQFIIIQTQ--------------ALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHhCCChhHHHHHHhhhhheeecCcH--------------HHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999944211 1012222 2445677788999999999998888776543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.67 E-value=37 Score=40.90 Aligned_cols=212 Identities=17% Similarity=0.203 Sum_probs=111.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEE--eeCCCCE--EEEEe-CC---CeEEEEeccCCCC
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV--NELDVSL--LLVAS-CN---GNIRIWKDYDQKD 1116 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~--ns~d~~~--L~tgs-~D---G~IrIWdl~~~~~ 1116 (1348)
|...+++....++-+.+||++ |+.+..+... ++.-+... ..-++.. |++++ .+ ..|++|.+....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 445588888889999999998 7777777533 33333321 1123332 44444 32 4799999865333
Q ss_pred ceeEEeee-ecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECC---CCc---eeeeeecCCCCCCeEEEEE
Q 000697 1117 KQKLVTAF-SSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLE---KEQ---QMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1117 ~~~lvs~~-~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~---t~~---~~v~~l~~~~~~~VtsL~~ 1187 (1348)
....+... ..+......+.. +|+--++..+ +.++.+.+|.+..|-+. .+. ..++++...+ .+-.+ .
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yG--lcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGC-V 214 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYG--LCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGC-V 214 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEE--EEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEE-E
T ss_pred cceEcCCCCccccccccccee--eEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEE-E
Confidence 33222110 001111112333 3333344333 56666889988888664 221 2567776643 36777 4
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~----~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
.+.....|+.|-++.-|.-|+...... .+... .-.+....|-.|++-.. +.|.+|+|.-.+++..+||.....
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 445666888899999899998873321 12111 11123467888888543 123455555567889999988543
Q ss_pred cceEEEe
Q 000697 1262 DAYLTID 1268 (1348)
Q Consensus 1262 ~~v~t~~ 1268 (1348)
..+..|.
T Consensus 294 ~~~g~f~ 300 (381)
T PF02333_consen 294 AYVGSFR 300 (381)
T ss_dssp -EEEEEE
T ss_pred cccceEE
Confidence 4444443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.47 Score=39.22 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL 1069 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~ 1069 (1348)
...|.+++|+|..++||.|..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 4544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.54 E-value=30 Score=39.53 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=110.5
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg--~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
..+....-...+.|..+|.++-+.+.-| .|+.+|+++++.+....-... ---..++.. ++.+..-.-.+|...
T Consensus 39 ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~---~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 39 YPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL---GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE---TTEEEEEESSSSEEE
T ss_pred CCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE---CCEEEEEEecCCeEE
Confidence 3333345577888977888777777655 699999999988776654330 112344442 445555566789999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC----CCeE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD----CSIS 1183 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~----~~Vt 1183 (1348)
+||..+ .+.+..+. +. ..-+. ++ .++..|+.+.....|+.+|..+.+ .+..+....+ ..++
T Consensus 114 ~yd~~t----l~~~~~~~-y~---~EGWG----Lt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 114 VYDPNT----LKKIGTFP-YP---GEGWG----LT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp EEETTT----TEEEEEEE--S---SS--E----EE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EE
T ss_pred EEcccc----ceEEEEEe-cC---CcceE----EE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcE
Confidence 999855 23332221 22 23344 33 468888888888899999998877 6665543211 1255
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC---------CC---CCCCCeEEEEEecCCCCCEEEEE
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---------HT---QQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~---------~~---~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
-+.+. +|.+.+=.-....|...|..+++ +...+.. .. ....-.+.|+++|. .+++++||
T Consensus 179 ELE~i--~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-~~~l~vTG 249 (264)
T PF05096_consen 179 ELEYI--NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-TDRLFVTG 249 (264)
T ss_dssp EEEEE--TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred eEEEE--cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-CCEEEEEe
Confidence 56544 45555545555667777877776 3332210 00 11356889999998 56667776
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.2 Score=54.13 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccC-hhhhhhhhhccChhhhhhhc
Q 000697 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALD-KSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 474 ~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~-~~~q~~l~k~~~~~yf~~~L 552 (1348)
..|.-|+.-+-..+-+| ..++ +.||=|+|..|+-.-|+|.| ++...+.-+-- |..+..++ +.|++=-
T Consensus 28 ~kr~~a~kkvIa~Mt~G---~DvS---slF~dvvk~~~T~dlelKKl-vyLYl~nYa~~~P~~a~~av-----nt~~kD~ 95 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVG---KDVS---SLFPDVVKCMQTRDLELKKL-VYLYLMNYAKGKPDLAILAV-----NTFLKDC 95 (734)
T ss_pred hhHHHHHHHHHhcCccC---cchH---hhhHHHHhhcccCCchHHHH-HHHHHHHhhccCchHHHhhh-----hhhhccC
Confidence 34445555444455455 2222 56999999999888899987 55554444432 33322221 2222222
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
.+..|+.|.++.=-++.+ ....+-..+.+=|...++ |..|.+|..+++|..+|.....+ ++
T Consensus 96 --~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~-------d~~~yvRktaa~~vakl~~~~~~---~~ 156 (734)
T KOG1061|consen 96 --EDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLK-------DDDPYVRKTAAVCVAKLFDIDPD---LV 156 (734)
T ss_pred --CCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHhhcCChh---hc
Confidence 233468887765333322 222234455566677787 88999999999999999976544 66
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
...+..+.|-.++.|.+|+|=|.++-||.-+....
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 77888889999999999999999999999998554
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.67 Score=59.08 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1348)
+..|+-+.+-||.+|--+.. +-..++..+...|+. ....-+|-=.++++|-||..|.. .++..++
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~------~~~~aiRnNiV~am~D~C~~YTa----m~d~YiP 1009 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEY------NTAHAIRNNIVLAMGDICSSYTA----MTDRYIP 1009 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHh------hhHHHHhcceeeeehhhHHHHHH----HHHHhhH
Confidence 78899888899998833322 334456677777774 44677899999999999987743 1334444
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 000697 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1348)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~ 718 (1348)
++...|.|++|.||+-.++.|+++++.+. +...-.+-...+..+-|.++-+|.-+-+.++.
T Consensus 1010 -~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~------------------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1010 -MIAASLCDPSVIVRRQTIILLARLLQFGI------------------VKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred -HHHHHhcCchHHHHHHHHHHHHHHHhhhh------------------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 88899999999999999999999995421 11112222233333459999999999999999
Q ss_pred HHHh-----cchhHHHHHHhh
Q 000697 719 FAFG-----HKQHLKSIAAAY 734 (1348)
Q Consensus 719 ~~~~-----~~~~f~~~a~~~ 734 (1348)
++.. +..+|+..-+..
T Consensus 1071 vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1071 VLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHhhcCccchHHHHHHHHHHH
Confidence 8876 445566654443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.22 E-value=44 Score=40.89 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEE-EEEeCC-----------------CCEE-E
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRH-----------------APII-A 1287 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vts-La~spd-----------------g~~L-a 1287 (1348)
..+.+++.+|. +++.++...-|.|.++|+..+ ..++.+++.++.=.. +..... ..+| +
T Consensus 308 R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPS--GRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCC--CCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 45788999999 899888888899999999987 778888776542111 111100 1122 2
Q ss_pred EEeCCCcEEEEEc-CCceEEEEec
Q 000697 1288 SGSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~-~g~~l~~i~~ 1310 (1348)
-.-.-|.|.||++ .|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 3455678888884 5666666554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.54 Score=38.88 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1305 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l 1305 (1348)
...|.+++|+|...+||.|+.+|.|.+|.++++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 45699999999999999999999999999887654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=13 Score=47.17 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=88.2
Q ss_pred CCCEEEEEECCC------cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-----CeEEEEeccCC
Q 000697 1046 FSPIVVAADENE------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIRIWKDYDQ 1114 (1348)
Q Consensus 1046 dg~~Latgs~dg------~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~IrIWdl~~~ 1114 (1348)
++..++.|+.++ .+..||..+++... +.....+......+.+ ++.+.+.||.+ ..+..||..+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~- 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE- 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC-
Confidence 455666666432 46777877665422 2211111122223333 67777778765 2466777654
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--C----CeEEEEECCCCceeee--eecCCCCCCeEEEE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--V----SSIMLWDLEKEQQMVN--PIPSSSDCSISALT 1186 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--D----g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~ 1186 (1348)
++... ......+.... .++. -++..++.||. + +.+..||..+.+ -.. .++..... .++.
T Consensus 368 -~~W~~------~~~lp~~r~~~--~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~--~~~~ 434 (534)
T PHA03098 368 -SKWRE------EPPLIFPRYNP--CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYG--GCAI 434 (534)
T ss_pred -Cceee------CCCcCcCCccc--eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccC--ceEE
Confidence 32222 22111111111 1111 13444555552 1 458899988765 221 22211111 1221
Q ss_pred EecCCCCEEEEEeCCC--------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcEE
Q 000697 1187 ASQVHGGQLAAGFVDG--------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDIQ 1253 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG--------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-----G~I~ 1253 (1348)
. .++.+++.|+.++ .+.+||..+.+ -.. .............+.+ + +..++.|+.+ +.|.
T Consensus 435 ~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~-~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 435 Y--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTE-LSSLNFPRINASLCIF--N--NKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred E--ECCEEEEECCccCCCCCcccceEEEecCCCCc-eee-CCCCCcccccceEEEE--C--CEEEEEcCCcCCcccceeE
Confidence 2 2566777776532 38889988765 111 1111111111112222 3 6777777654 4678
Q ss_pred EEEcCCC
Q 000697 1254 FLDIRNH 1260 (1348)
Q Consensus 1254 IWDlr~~ 1260 (1348)
+||..+.
T Consensus 507 ~yd~~~~ 513 (534)
T PHA03098 507 VYDDKTN 513 (534)
T ss_pred EEeCCCC
Confidence 8887754
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.98 E-value=3.8 Score=50.31 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=77.3
Q ss_pred CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc--EEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1202 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD--IQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
..+.++|+.+++... .. ... +.-..-+|+|+ +..++++...||. |.++|+... . ...+....+.-+.=.|
T Consensus 218 ~~i~~~~l~~g~~~~-i~-~~~---g~~~~P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~-~-~~~Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPV-IL-NFN---GNNGAPAFSPD-GSKLAFSSSRDGSPDIYLMDLDGK-N-LPRLTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccce-ee-ccC---CccCCccCCCC-CCEEEEEECCCCCccEEEEcCCCC-c-ceecccCCccccCccC
Confidence 459999999887332 22 222 34446689999 3445556667776 555566654 2 3334433333346679
Q ss_pred eCCCCEEEEEeC-CC--cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1280 HRHAPIIASGSA-KQ--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1280 spdg~~LasgS~-Dg--~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+|+|+.++-.++ .| .|.+++.+|.....+.. .. +.-..-.|+|+|.+++..+.
T Consensus 290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~-------~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SG-------GGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cC-------CCCcCccCCCCCCEEEEEec
Confidence 999997776544 34 46666788887776665 32 12226788999999887764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.84 E-value=35 Score=39.51 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=109.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC------CCceeeeeecCCC----CCCeEEEEEecCCC------------CEEEEE
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLE------KEQQMVNPIPSSS----DCSISALTASQVHG------------GQLAAG 1198 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~------t~~~~v~~l~~~~----~~~VtsL~~~s~dg------------~~LvsG 1198 (1348)
++++|.+..-++....+...+||.. ..+..+.+++... ....+.+. ++... ..|+.+
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiV-fN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQV-FNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEE-EeCCCceEEcCCCcccceeEEEE
Confidence 6778877666665677899999987 2222455655321 12356663 33211 347788
Q ss_pred eCCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCcce-EEEecC--
Q 000697 1199 FVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAY-LTIDAH-- 1270 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~----~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~~~~~v-~t~~~h-- 1270 (1348)
++||+|.-|...-... ....+... ....-...+++-....+.+|..+ -.+|+|.+||-.-....+ ..+...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 9999999998643321 11122111 11123345665533224555544 467999999876431100 011110
Q ss_pred ---CC-----------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC-----
Q 000697 1271 ---RG-----------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY----- 1331 (1348)
Q Consensus 1271 ---~~-----------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd----- 1331 (1348)
-. .|+-..-.+++.-=+.|..-|.|-+||.+|+.++++.. . ..-..-+.|+..|-
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as--~----g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS--S----GRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc--C----CcccCCceeeeChhhhCCC
Confidence 00 01111112222222333445789999999999998854 2 12355677777553
Q ss_pred -CCEEEEEECCCeEEEcC
Q 000697 1332 -QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 -g~~Latgs~Dg~I~IWd 1348 (1348)
+.+|+---.||+|..||
T Consensus 260 sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCCeEEeecCCceeEEec
Confidence 46666666699999987
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=11 Score=42.69 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=87.1
Q ss_pred EEecCCCeEEEEECC-----CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEE-----------
Q 000697 1142 DWQQQSGYLYASGEV-----SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVR----------- 1205 (1348)
Q Consensus 1142 ~ws~~~~~Ll~gg~D-----g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vr----------- 1205 (1348)
.|++++.+|+++-+| |.|-|||.+.+-+.+-++.++.-. -..+ .+..||+.++.+. |-|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG-pHev-~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG-PHEV-TLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC-ccee-EEecCCcEEEEeC--CceecccccCccccc
Confidence 578999999998433 789999998665467777776544 3455 4557898888753 3333
Q ss_pred ---------EEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE----EEEEcCCCCcceEEEecC--
Q 000697 1206 ---------LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI----QFLDIRNHKDAYLTIDAH-- 1270 (1348)
Q Consensus 1206 ---------vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I----~IWDlr~~~~~v~t~~~h-- 1270 (1348)
+.|..+++-+.+..-....+.-.|..++..++ |..++-+-..|.- -+--....++++.-+...
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee 273 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE 273 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH
Confidence 33333333111110010123345777777766 6655544333210 000000111233332211
Q ss_pred -----CCCeEEEEEeCCCCEEEEEeCCC-cEEEEE-cCCceEEE
Q 000697 1271 -----RGSLSALAVHRHAPIIASGSAKQ-LIKVFS-LEGEQLGT 1307 (1348)
Q Consensus 1271 -----~~~VtsLa~spdg~~LasgS~Dg-~I~Vwd-~~g~~l~~ 1307 (1348)
...|-+++.+.+..+++..|-.| ...+|| .+|..+..
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 23577888887766666655544 567899 45665544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.68 E-value=40 Score=39.50 Aligned_cols=276 Identities=14% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEe--eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSF--DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~--~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
....+..|.|.....-.++|. .+. |+...+| +.=... ....+..-...++.| . +...+++ +..|.| +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f--~-~~~g~iv-G~~g~l--l~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISF--D-GNEGWIV-GEPGLL--LH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEE--E-TTEEEEE-EETTEE--EE
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEe--c-CCceEEE-cCCceE--EE
Confidence 346899999996556666665 553 4544443 211111 111111134667777 2 2334444 455543 33
Q ss_pred ccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1111 DYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
..+.....+.+. +. ........ +.... .+....++..|.|+.= .+.++ .=+.+.......+..+ ...
T Consensus 86 T~DgG~tW~~v~----l~~~lpgs~~~----i~~l~-~~~~~l~~~~G~iy~T-~DgG~-tW~~~~~~~~gs~~~~-~r~ 153 (302)
T PF14870_consen 86 TTDGGKTWERVP----LSSKLPGSPFG----ITALG-DGSAELAGDRGAIYRT-TDGGK-TWQAVVSETSGSINDI-TRS 153 (302)
T ss_dssp ESSTTSS-EE--------TT-SS-EEE----EEEEE-TTEEEEEETT--EEEE-SSTTS-SEEEEE-S----EEEE-EE-
T ss_pred ecCCCCCcEEee----cCCCCCCCeeE----EEEcC-CCcEEEEcCCCcEEEe-CCCCC-CeeEcccCCcceeEeE-EEC
Confidence 333222222220 11 01111111 22222 3344445555654432 22222 1122222223347777 566
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
++|.+++++..-....-||--...-..... .....|.++.|.|+ +...+.+ ..|.|++=+... ...++..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~---~~~~w~~ 223 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNR----NSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPD---DGETWSE 223 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TT---EEEEE--
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEcc----CccceehhceecCC--CCEEEEe-CCcEEEEccCCC---Ccccccc
Confidence 888888777655555677755332111111 12378999999998 6665544 888888877221 1222221
Q ss_pred -------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1270 -------HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1270 -------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
..-.+..+++.+++.+.|+|+. |.+.+=.-.|+.=...+. -. .-.+.+..+.|....+-++.| .||
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~-~~----~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRV-GE----NVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GG-GT----TSSS---EEEEEETTEEEEE--STT
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECcc-cc----CCCCceEEEEEcCCCceEEEC-CCc
Confidence 2234789999999888887764 444332233544444332 11 112467888997766555554 788
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87665
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.46 E-value=1 Score=56.93 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=99.9
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
+|+=+++..+..+. |+|.||=+=|...-...|..+..|++.- +.++. |++|++|..++=-+|.+.-
T Consensus 50 lF~dvvk~~~T~dl--elKKlvyLYl~nYa~~~P~~a~~avnt~--------~kD~~----d~np~iR~lAlrtm~~l~v 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL--ELKKLVYLYLMNYAKGKPDLAILAVNTF--------LKDCE----DPNPLIRALALRTMGCLRV 115 (734)
T ss_pred hhHHHHhhcccCCc--hHHHHHHHHHHHhhccCchHHHhhhhhh--------hccCC----CCCHHHHHHHhhceeeEee
Confidence 45556666666665 9999998888666666666665544332 22221 8899999877666665553
Q ss_pred cchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1348)
+ .+-+.+.+-|..+++|..|.||+.+++....+-....+.+ .+..+...|-.+..|
T Consensus 116 ~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~-----------------~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 116 D-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV-----------------EDSGLVDALKDLLSD 171 (734)
T ss_pred h-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc-----------------cccchhHHHHHHhcC
Confidence 3 1334566678999999999999999999999874433222 133445556667779
Q ss_pred CChhhHHHHHHHHHHHHHhcc
Q 000697 704 GSPLVRAEVAVALARFAFGHK 724 (1348)
Q Consensus 704 ~sp~VR~e~~~~ls~~~~~~~ 724 (1348)
.+|+|-..++-+++-+.....
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCC
Confidence 999999999999988776653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.42 E-value=33 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEC--CCCC----eeeEeecCCCCC-CCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1183 SALTASQVHGGQLAAGFVDGSVRLYDV--RTPD----MLVCSTRPHTQQ-VERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG~VrvwDl--r~~~----~~v~~~~~~~~h-~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
+.++|......+.++-+.+-+|.-||. .++. ..+..++..+.. .-.--.+++.-. |...++.-..|+|...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEEE
Confidence 345444333344556677788888883 3332 111111111000 111223444444 8888888889999999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
|..++ +.+.++.-....|++++|--
T Consensus 239 dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCC-cEEEEEEcCCCceEEEEecC
Confidence 99998 78888888888999999964
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.33 E-value=4.3 Score=48.12 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=103.2
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCc----hhhhHHhcc-CCchhhhhHHHHHHHHHhccChhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGI----FPYVLKLLQ-TTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gi----fpyvlklL~-s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
+.+|-...+|.+..+.+|-..+ | +|.... .|.++++|+ +...-.|.-+++.+.++-.- .+
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~---~----------aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~a 138 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAA---D----------ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE--RA 138 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH---H----------HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--hh
Confidence 5677777878887776665554 2 343322 567778888 46556676666666555432 22
Q ss_pred hhhhhhccChhhhhhhccCCC--------Cch--HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCC
Q 000697 536 QVDLVKDGGHAYFIRFLDSME--------AYP--EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQ 605 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~--------~~~--~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d 605 (1348)
... .+..|++.. ..+ ..|..++..|+.+- .......+..++. +
T Consensus 139 ~~~---------l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~-------~ 191 (335)
T COG1413 139 LDP---------LLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLE-------D 191 (335)
T ss_pred hHH---------HHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHh-------C
Confidence 221 222333222 001 45777777776663 4456777888888 7
Q ss_pred CCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 606 TEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 606 ~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+...+|.+++.+||++.... ..+...+...+.|++..||.+++.+||..-
T Consensus 192 ~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 192 EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 78899999999999998875 334457889999999999999999999875
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.32 E-value=20 Score=45.78 Aligned_cols=244 Identities=14% Similarity=0.121 Sum_probs=117.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1136 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1136 (1348)
-.|+||++. |..+.++--.. +.+-.+.| + +...|++...+|++.||++... ..+.. -.........|..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~---~~lI~mgW--s-~~eeLI~v~k~g~v~Vy~~~ge--~ie~~--svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH---GELIGMGW--S-DDEELICVQKDGTVHVYGLLGE--FIESN--SVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC---CCeeeecc--c-CCceEEEEeccceEEEeecchh--hhccc--ccccccccCceeE
Confidence 458888875 66666654444 47888888 3 5667778889999999998541 11100 0001111222222
Q ss_pred cceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEecCCCCEEEEEeCCCe--EEEEECCC
Q 000697 1137 SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGS--VRLYDVRT 1211 (1348)
Q Consensus 1137 i~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~---~~~~~VtsL~~~s~dg~~LvsGs~DG~--VrvwDlr~ 1211 (1348)
+-.|+ +|..+-..++..+.+-+..... ..+++. .... -+|-+.+.++.+....-..+-. ..++-...
T Consensus 133 ---c~~f~--~GVavlt~~g~v~~i~~~~~~~--~~~~~diP~~~~~-~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~ 204 (829)
T KOG2280|consen 133 ---CRFFH--NGVAVLTVSGQVILINGVEEPK--LRKMPDIPYNELP-KSCWTVFQPHRQSTILLDVDVAVGLHICQVEE 204 (829)
T ss_pred ---EEEec--CceEEEecCCcEEEEcCCCcch--hhhCCCCCCccCC-CcceeEecCCCcceeEEeechhhhhcccceec
Confidence 23333 4444444444444454544432 333322 1111 1233223332221111111100 01111111
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe--cCCCCeEEEEEeCCCCEEEEE
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--~h~~~VtsLa~spdg~~Lasg 1289 (1348)
....... ...-.+.+..+.++|+ +++|+-=..+|.|.+-++... +....+. .|. .--.++|.-+...++
T Consensus 205 ~~~q~~~---~~~~~~~~~ki~VS~n--~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~-~p~qm~WcgndaVvl-- 275 (829)
T KOG2280|consen 205 SRVQLHA---LSWPNSSVVKISVSPN--RRFLALYTETGKIWVVSIDLS-QILCEFNCTDHD-PPKQMAWCGNDAVVL-- 275 (829)
T ss_pred ccccccc---cCCCCceEEEEEEcCC--cceEEEEecCCcEEEEecchh-hhhhccCCCCCC-chHhceeecCCceEE--
Confidence 1101111 1111256888999998 999999999999999988765 4555554 222 222566654442222
Q ss_pred eCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1290 SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
+.+..+.+..-.|..+.-+.. ++ +. +.--+||-.+++.+
T Consensus 276 ~~e~~l~lvgp~gd~V~f~yd-~t---------~~-l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 276 SWEVNLMLVGPPGDSVQFYYD-ET---------AI-LSAEVDGVRIITST 314 (829)
T ss_pred EEeeeEEEEcCCCCccccccC-CC---------ce-eeeccCeeEEeccc
Confidence 223334444444555444333 22 11 55555665555543
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.8 Score=52.83 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=78.9
Q ss_pred ccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHH
Q 000697 530 ALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPL 609 (1348)
Q Consensus 530 ~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~ 609 (1348)
..||.| .+++. +.+.|.++.+.+++. --|--++=+||.+.+..++--.. +-.++.+++.+.+- |-.|-
T Consensus 80 ~~dpeg-~~~V~-~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~-------DRE~~ 147 (885)
T COG5218 80 PDDPEG-EELVA-GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLF-------DREKA 147 (885)
T ss_pred CCChhh-hHHHH-HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHh-------cchHH
Confidence 346666 45553 456677777777765 67778888999999887774433 44556667777776 77899
Q ss_pred HHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHH
Q 000697 610 FLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1348)
Q Consensus 610 ~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1348)
||.=++.||.++-+.-...+. .+...|..++ +|||.|||.+++.-+.
T Consensus 148 VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 148 VRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 999999999999754322221 1222344444 8999999998876553
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.02 E-value=6.2 Score=49.60 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhh-hhhhccChhhhhhhcc
Q 000697 476 RFRALVLLGRFLDMGP-WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV-DLVKDGGHAYFIRFLD 553 (1348)
Q Consensus 476 rlral~ll~~Fld~~~-wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~-~l~k~~~~~yf~~~L~ 553 (1348)
--|-+.++++|+.-=| .-.--=+=.|+|.|+||-+.++..-.|-=+.-|+++++.. .+|. |-+-+++..-...-|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHh
Confidence 3467778888873222 0000002358899999999988666666688899999872 2331 1122223333333344
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh-------hccch
Q 000697 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL-------WEDFT 626 (1348)
Q Consensus 554 ~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l-------~~~~~ 626 (1348)
+.+ |--|--+.++|+.+= +.+..- +..+.+.+..++++ ||+||||.++++++.-= .+...
T Consensus 137 Dre--p~VRiqAv~aLsrlQ-~d~~de----e~~v~n~l~~liqn------DpS~EVRRaaLsnI~vdnsTlp~IveRar 203 (892)
T KOG2025|consen 137 DRE--PNVRIQAVLALSRLQ-GDPKDE----ECPVVNLLKDLIQN------DPSDEVRRAALSNISVDNSTLPCIVERAR 203 (892)
T ss_pred ccC--chHHHHHHHHHHHHh-cCCCCC----cccHHHHHHHHHhc------CCcHHHHHHHHHhhccCcccchhHHHHhh
Confidence 444 468888999999984 322211 34567888888987 99999999999987632 22211
Q ss_pred HHH----HhhhccCch-------------hhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 627 EAQ----TIGRRADAP-------------AIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 627 ~~~----~~~~~~~~~-------------~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+++ ...+...+. ..+-.-|+|..--||.|++=+|..=|
T Consensus 204 DV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W 258 (892)
T KOG2025|consen 204 DVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW 258 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 111 111111110 01223568999999999988777644
|
|
| >smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.1 Score=48.40 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhccC---CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecch
Q 000697 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA---KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226 (1348)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~---~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~ 226 (1348)
.++|.+-++.+-- ......|.+.+++++.+..+.+.. ..+=++|-|-|||. .|.|+--|.. ++++
T Consensus 32 ~~~l~~~f~~lgF--~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-----~~~l~~~D~~-----~v~l 99 (241)
T smart00115 32 AENLTELFQSLGY--EVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-----EGGIYGTDHS-----PLPL 99 (241)
T ss_pred HHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-----CCeEEEecCC-----EEEH
Confidence 4555555555333 456789999999999998886642 34557888999995 4678776643 6788
Q ss_pred Hhhhhhc---------CCCeEEEEeCCchhhHHHHHHhhccCCCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhc
Q 000697 227 SDLDSWL---------KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSC 297 (1348)
Q Consensus 227 ~~l~~~~---------~~p~~~v~dc~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftsc 297 (1348)
.+|.+.+ |.|-+||+|..-....-..+....+. ... .+......+. ...-++|+|-+.
T Consensus 100 ~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~---~~~---------~~~~~~~~~~-~~p~~~D~li~y 166 (241)
T smart00115 100 DEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDV---DDP---------PTEFEDDAIY-KIPVEADFLAAY 166 (241)
T ss_pred HHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeeccccc---ccc---------cccccccccc-cCCCcCcEEEEE
Confidence 8888877 67999999987543211111000000 000 0001111111 122478999999
Q ss_pred ccchHHHHHH
Q 000697 298 LTTPITMALR 307 (1348)
Q Consensus 298 l~tP~~~al~ 307 (1348)
-|.|-..|.+
T Consensus 167 sT~pG~va~r 176 (241)
T smart00115 167 STTPGYVSWR 176 (241)
T ss_pred eCCCCeEeec
Confidence 9999988754
|
Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.16 Score=64.11 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=113.2
Q ss_pred CCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1056 NERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.+-+++-|.++...- ..+++.. +.+-.+.|- +.+...+. -.-|...|||+..-+|+....-..+........+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~---G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFP---GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCC---CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 344555555432210 1123333 567778883 33433333 4457899999866444432111111112122222
Q ss_pred cccceEEEEec---CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC---------CeEEEEEecCCCCEEEEEeCCC
Q 000697 1135 RCSNVVVDWQQ---QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC---------SISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1135 ~si~~~v~ws~---~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~---------~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
.- +.|.| +.-++..+-+++.|++....+.. ...+..|... .+.-+...++||..|++.+.||
T Consensus 184 ~~----V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 184 QL----VSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred ce----eeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 11 34433 34455555677888887776654 2333444333 1223344689999999999999
Q ss_pred eEEEEECCC-CC---eeeEeecCCCCCCCCeEEEEEecC-----CCC--CEEEEEE-CCCcEEEEEcCCCCcceEEEecC
Q 000697 1203 SVRLYDVRT-PD---MLVCSTRPHTQQVERVVGISFQPG-----LDP--AKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1203 ~VrvwDlr~-~~---~~v~~~~~~~~h~~~I~sl~~sp~-----~~g--~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
.++.|-+.- ++ .+...++.+.+| +-.|..++.. .-+ .++++++ .+..+++|..... +|+ +...
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~--p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w-~Cl--l~~~ 332 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKH--PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW-QCL--LDKL 332 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCC--CceeeeeccccccCCccceeEEEEecccCCcceeEeeccch-hhh--hhhc
Confidence 999887652 22 134444444433 2222224322 001 2334444 3456999987766 444 1111
Q ss_pred CCCeEEEEEeCCCC------------EEEEEeCCCcEEEEE
Q 000697 1271 RGSLSALAVHRHAP------------IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~------------~LasgS~Dg~I~Vwd 1299 (1348)
...|..+. -++|. .+++-+-++.|++|.
T Consensus 333 ~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 333 IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 22333333 22222 123456678888886
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.7 Score=41.94 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc
Q 000697 567 FVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 646 (1348)
Q Consensus 567 fiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~ 646 (1348)
.+|+.++-..+.. ..-.-..++.-.+..+. |+++.||..+|=+|.++.....+.- ...-..+.+.|.+++.
T Consensus 8 i~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~-------D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 8 IGLAAVAIALGKD-ISKYLDEILPPVLKCFD-------DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHchHh-HHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 4445444333332 33345566667777777 8999999999999999986543221 1123455567899999
Q ss_pred CCCHHHHHHHHH
Q 000697 647 EPQPEVRASAVF 658 (1348)
Q Consensus 647 D~sP~VRaa~v~ 658 (1348)
|+.|.||.++-+
T Consensus 79 D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 79 DPDENVRSAAEL 90 (97)
T ss_pred CCchhHHHHHHH
Confidence 999999999854
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=13 Score=42.31 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=44.9
Q ss_pred EEcCCCCEEEEEE-----CCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1042 LLQPFSPIVVAAD-----ENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1042 ~fspdg~~Latgs-----~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|||||.+|...- ..|.|-|||...+ +.+..|..|. -.-..+.| ..||..++.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G---iGpHev~l--m~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG---IGPHEVTL--MADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC---cCcceeEE--ecCCcEEEEeC--Cceecc
Confidence 3999999988764 3578999999854 5667788777 55667778 57999888764 335544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=31 Score=44.32 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCCcEEEE--ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-CeE
Q 000697 1036 KGTKTALLQPFSPIVVAAD------ENERIKIW--NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs------~dg~I~VW--d~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1106 (1348)
..+...+++|+|+.++... .|+.-.|| +.. +.. ..+... ...+.-.| +++|..|++..+. ..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g----~~~t~PsW--spDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG----HSLTRPSW--SLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC----CCCCCceE--CCCCCceEEEecCcceE
Confidence 3578899999999777654 24444444 542 222 333222 23667778 7898888877643 223
Q ss_pred EEEeccCCCCceeEEeeee--ccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEE---EECCCCceee---eeecCC
Q 000697 1107 RIWKDYDQKDKQKLVTAFS--SIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML---WDLEKEQQMV---NPIPSS 1177 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~--~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV---WDl~t~~~~v---~~l~~~ 1177 (1348)
++.+-.. .++.... ... ... .....|.. +.|++||..++... +|.|.+ -....+...+ ..+...
T Consensus 422 ~v~~~~~-~gql~~~-~vd~ge~~~~~~g~Iss----l~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 422 RVIRDPA-TGQLART-PVDASAVASRVPGPISE----LQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEeccCC-CceEEEE-eccCchhhhccCCCcCe----EEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 3333211 1111100 000 000 12334555 99999999988776 466766 3322332011 112222
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
....+.++. |..++.+ +.+..++...+|.+.-.-.....+ ........+..|+-.+. .++....+|.+.
T Consensus 495 l~~~~~~l~-W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLD-WRTGDSL-VVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS----TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccce-EecCCEE-EEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc----eEEEEcCCceEE
Confidence 222257774 5556664 455555555555544222111111 11112356777766543 455566666443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.76 E-value=49 Score=37.79 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=104.8
Q ss_pred EEEecCCCeEEEEECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1141 VDWQQQSGYLYASGEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
+.|..++..+-++|.-| .|+.+|+.+++ ......-....---.++.. ++.+..-.=.+|...+||..+-+ .+..
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-KIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE-EEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce-EEEE
Confidence 55644554455556544 69999999998 6655443322212333222 44556666788999999999876 4444
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-----CCeEEEEEeCCCCEEEEEeCCC
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGSAKQ 1293 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-----~~VtsLa~spdg~~LasgS~Dg 1293 (1348)
+ ... +.=..++ .+ +..|+.......+.++|..+. +..+++.... ..++.+.+. +|.+.|=.=...
T Consensus 126 ~-~y~---~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 F-PYP---GEGWGLT--SD--GKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp E-E-S---SS--EEE--EC--SSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred E-ecC---CcceEEE--cC--CCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 4 222 2333444 33 666776666778999998876 5565555332 246667776 566666655556
Q ss_pred cEEEEE-cCCceEEEEeccCCccc---------ccccCCeEEEEEeCCCCEEEEEE
Q 000697 1294 LIKVFS-LEGEQLGTIRYHHPSFM---------AQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1294 ~I~Vwd-~~g~~l~~i~~~h~~f~---------~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.|...| .+|+....+.. .. .. .......+++|++|....|...|
T Consensus 196 ~I~~Idp~tG~V~~~iDl-s~-L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDL-SG-LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE--HH-HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEh-hH-hhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677778 56777776643 11 10 01246789999998876554444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.42 E-value=36 Score=44.60 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=86.7
Q ss_pred HhcCchhhhHHhccCC---chhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCC----CCchHHHH---HHHH
Q 000697 498 LSVGIFPYVLKLLQTT---TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSM----EAYPEQRA---MAAF 567 (1348)
Q Consensus 498 l~~gifpyvlklL~s~---a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~----~~~~~~r~---~~af 567 (1348)
++--+.+-++.||+|| ..++-.++-|--|-.....+ +-.|.-.++.|+.+ .....+|| -.|-
T Consensus 731 ~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~--------~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~ 802 (1233)
T KOG1824|consen 731 ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP--------DLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAK 802 (1233)
T ss_pred HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC--------CccHHHHHHHHcCCcccccccchhHHHHHHHHH
Confidence 3445677888888887 34454444443332222111 11244555555532 11136666 3677
Q ss_pred HHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccC
Q 000697 568 VLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE 647 (1348)
Q Consensus 568 iLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D 647 (1348)
|.|.++.-++ |.. .-+...+..-+... ..+--.|-.+.|.||.+-...+..- ..++...++..++.
T Consensus 803 cvA~Lt~~~~--~~s---~s~a~kl~~~~~s~-----~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 803 CVAALTCACP--QKS---KSLATKLIQDLQSP-----KSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNS 868 (1233)
T ss_pred HHHHHHHhcc--ccc---hhHHHHHHHHHhCC-----CCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCC
Confidence 8888876666 222 12233344333311 3345688899999999876654422 23344578899999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 000697 648 PQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 648 ~sP~VRaa~v~aL~~~i 664 (1348)
++-+|++|+.||||.+-
T Consensus 869 p~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLA 885 (1233)
T ss_pred ChHHHHHHHHHHhhhhh
Confidence 99999999999999986
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=12 Score=47.98 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=81.1
Q ss_pred eEEEEEecCCCCEEEEEe------CCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC----
Q 000697 1182 ISALTASQVHGGQLAAGF------VDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---- 1249 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs------~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---- 1249 (1348)
+.+. ..+++|+.++... .|+ .|.+++..... .... . + ...+.-.|+|+ |..+++.+..
T Consensus 352 vssp-aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt--~-g--~~~t~PsWspD--G~~lw~v~dg~~~~ 421 (591)
T PRK13616 352 ITSA-ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL--E-G--HSLTRPSWSLD--ADAVWVVVDGNTVV 421 (591)
T ss_pred cccc-eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee--c-C--CCCCCceECCC--CCceEEEecCcceE
Confidence 6666 5678898877665 243 55666653222 2211 1 1 24788899998 7777666432
Q ss_pred --------CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEE---EEc-CCceEEEEeccCCcccc
Q 000697 1250 --------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV---FSL-EGEQLGTIRYHHPSFMA 1317 (1348)
Q Consensus 1250 --------G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~V---wd~-~g~~l~~i~~~h~~f~~ 1317 (1348)
+.+.+.++..+ +... ...+.|..+.|+|||..+|... +++|.| -.. .|. ..+.. ......
T Consensus 422 ~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~-~~~l~~ 493 (591)
T PRK13616 422 RVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTN-PREVGP 493 (591)
T ss_pred EEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecc-cEEeec
Confidence 23333344332 2221 2356799999999999887765 477776 332 343 22211 000000
Q ss_pred cccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1318 QKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1318 ~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.-...+.++.|..++.++ ++..++...+|
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceE
Confidence 112346889999999855 54444433333
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.46 Score=56.08 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=120.1
Q ss_pred hhhHHHhcC-CCC-C--CCCCCchhhHHHHhhchhhHH--HHHH-HHHHHhcCCH------HHHHHHHhcCchhhhHHhc
Q 000697 444 TAFEVWLDH-GSE-H--KKPPEQLPIVLQVLLSQCHRF--RALV-LLGRFLDMGP------WAVDLALSVGIFPYVLKLL 510 (1348)
Q Consensus 444 tafe~~L~~-g~~-~--~~~p~~lP~vLq~LlS~~~rl--ral~-ll~~Fld~~~------wAv~lal~~gifpyvlklL 510 (1348)
+.|-+||-. .+- + .+--..+|.+.+++...+.+. |-++ ++.++||.|| -+....+-.++ |--+++|
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L 298 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSL 298 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHH
Confidence 457777643 221 1 111256777778777665543 4333 5567888885 22222333333 3344444
Q ss_pred cCC---chhhhhHHHHHHHHHhccChhhhhhhhhccC-hhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHH--
Q 000697 511 QTT---TPELRQILVFIWTKILALDKSCQVDLVKDGG-HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI-- 584 (1348)
Q Consensus 511 ~s~---a~elr~~~~FIwa~il~~~~~~q~~l~k~~~-~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~-- 584 (1348)
+.. ..|+..-+-||-.+.-. +.|..+--|.- -..+...|..+ |-||- ..||+.+- .++
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~---svq~LsSFDeY~sEl~sG~L~WS---P~Hk~------e~FW~eNa----~rlne 362 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKN---SVQDLSSFDEYKSELRSGRLEWS---PVHKS------EKFWRENA----DRLNE 362 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHH---HHHhhccHHHHHHHHHhCCcCCC---ccccc------cchHHHhH----HHHhh
Confidence 422 45677666777654432 22211111100 01122233322 22321 12343321 123
Q ss_pred -hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 585 -EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 585 -~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
+-+++.++.++|+. ..+|.+-+-+|.=+|++..-+|+++.+..+-++-+.+..|++++.|+||-.|+.|+.++
T Consensus 363 nnyellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 363 NNYELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred ccHHHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 33567788888985 55699999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 000697 664 LD 665 (1348)
Q Consensus 664 i~ 665 (1348)
+.
T Consensus 437 m~ 438 (442)
T KOG2759|consen 437 MV 438 (442)
T ss_pred Hh
Confidence 73
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.25 E-value=16 Score=47.18 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeE-----eecC--------CCC-----CCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVC-----STRP--------HTQ-----QVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~-----~~~~--------~~~-----h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
.++++++. .+.|.||+.+....... .+.. ... -...|+.+.+..-++..+|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666654 67899998874332110 0000 000 11235555554434567889999999999
Q ss_pred EEEcCCCC-------------------cceEEEecCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCC--ceEEEEec
Q 000697 1254 FLDIRNHK-------------------DAYLTIDAHRGSLSALAVH--RHAPIIASGSAKQLIKVFSLEG--EQLGTIRY 1310 (1348)
Q Consensus 1254 IWDlr~~~-------------------~~v~t~~~h~~~VtsLa~s--pdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~ 1310 (1348)
+|.+..-- ++...+. -....+++++| ...++||+++....|.||-... +.....+.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 99763100 1122222 23478999999 8888999999999999987432 11111111
Q ss_pred cCCcccccccCCeEEEEEeCCC------CEEEEEECCCeEEEcC
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQ------VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg------~~Latgs~Dg~I~IWd 1348 (1348)
+ .+...|.+++|-++. ..|++++-.|.+-+|+
T Consensus 207 -~-----~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 207 -H-----QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred -c-----ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 1 244678899997654 2677777799887763
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=17 Score=46.00 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCCeEEEEECC-----CeEEEEECCCCceeee--eecCCCCCCeEEEEEecCCCCEEEEEeCC------CeEEEEECCCC
Q 000697 1146 QSGYLYASGEV-----SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGGQLAAGFVD------GSVRLYDVRTP 1212 (1348)
Q Consensus 1146 ~~~~Ll~gg~D-----g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~~~s~dg~~LvsGs~D------G~VrvwDlr~~ 1212 (1348)
++..++.||.+ ..+..||..+.+ -.. .++..... .++ ...++.+++.|+.+ ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~--~~~--~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYN--PCV--VNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCcc--ceE--EEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 45555666644 357788887765 221 22211111 112 12356777777732 46889998865
Q ss_pred CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC--------cEEEEEcCCCCcceEEEec---CCCCeEEEEEeC
Q 000697 1213 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA---HRGSLSALAVHR 1281 (1348)
Q Consensus 1213 ~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG--------~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~sp 1281 (1348)
+ -. ............ ++.. -+ +..++.|+.++ .+.+||..+.. ...+.. .......+.+
T Consensus 417 ~-W~-~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-- 486 (534)
T PHA03098 417 K-WS-KGSPLPISHYGG-CAIY-HD--GKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF-- 486 (534)
T ss_pred e-ee-ecCCCCccccCc-eEEE-EC--CEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--
Confidence 4 11 111111101111 2222 23 66777776432 38888987642 222211 1111122222
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCceEEEEe
Q 000697 1282 HAPIIASGSAK-----QLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1282 dg~~LasgS~D-----g~I~Vwd~~g~~l~~i~ 1309 (1348)
++++++.|+.+ +.|.+||...+.-..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 66777777654 46788886655444443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.9 Score=52.74 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh
Q 000697 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA 639 (1348)
Q Consensus 560 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~ 639 (1348)
-.|...|=||+.++-..|+ .++.++-..+. .+.|-.|.-++-+.--.+.+.+.--..-+... ..
T Consensus 947 gtR~vvAECLGkL~l~epe--------sLlpkL~~~~~-------S~a~~~rs~vvsavKfsisd~p~~id~~lk~~-ig 1010 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVLIEPE--------SLLPKLKLLLR-------SEASNTRSSVVSAVKFSISDQPQPIDPLLKQQ-IG 1010 (1233)
T ss_pred hhHHHHHHHhhhHHhCChH--------HHHHHHHHHhc-------CCCcchhhhhhheeeeeecCCCCccCHHHHHH-HH
Confidence 4588888899888754443 34555555565 66777887777777666655443222222222 34
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
.++.++.||.++||.+++.+|.+++...
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 7899999999999999999999999553
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=16 Score=45.77 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=86.2
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEeccCCCCce
Q 000697 1046 FSPIVVAADENE-----RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1046 dg~~Latgs~dg-----~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~~~~~~ 1118 (1348)
++.++++|+.++ .+..||..+++....-.... +......+. -++.+.+.||.++ .+..||..+ +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~----~~~~iYviGG~~~~~sve~ydp~~--n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYASGVP----ANNKLYVVGGLPNPTSVERWFHGD--AAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcceEEE----ECCEEEEECCcCCCCceEEEECCC--CeE
Confidence 345666776543 46667777654332211111 111222222 2677777777543 577777643 222
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeee--eecCCCCCCeEEEEEecCCCC
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
..+........... ++. -++...+.||.+ ..+..||.++.+ -.. .+...... .+++. .++.
T Consensus 344 ------~~~~~l~~~r~~~~--~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~--~~~~~--~~~~ 409 (480)
T PHA02790 344 ------VNMPSLLKPRCNPA--VAS-INNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYK--SCALV--FGRR 409 (480)
T ss_pred ------EECCCCCCCCcccE--EEE-ECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCcccc--ceEEE--ECCE
Confidence 22232222222211 111 134455555544 347789987765 222 11111111 12212 2566
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDIQFLDIRNH 1260 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-----G~I~IWDlr~~ 1260 (1348)
+.+.| |.+.+||.++++ -. ............ +++.. + +++.+.|+.+ ..|..||..+.
T Consensus 410 IYv~G---G~~e~ydp~~~~-W~-~~~~m~~~r~~~-~~~v~-~--~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 410 LFLVG---RNAEFYCESSNT-WT-LIDDPIYPRDNP-ELIIV-D--NKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEEC---CceEEecCCCCc-Ee-EcCCCCCCcccc-EEEEE-C--CEEEEECCcCCCcccceEEEEECCCC
Confidence 66766 457889987665 11 111221111222 22222 2 6788888754 34667776644
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.7 Score=52.55 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred hhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH
Q 000697 548 FIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 627 (1348)
Q Consensus 548 f~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~ 627 (1348)
|..+|......+..|.++|=.++.+++.||. +...+++..+.+.+ |.+..+|.+++=.|-.|+.+.++
T Consensus 25 y~~il~~~kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcE-------Ded~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 25 YKEILDGVKGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCE-------DEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--------SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHh-------cccHHHHHHHHHhHHHHHHhHHH
Confidence 3344443334478999999999999999999 55667888889998 88999999999999999988544
Q ss_pred HHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 628 AQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 628 ~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
- -..++..|..||.-..|..+.++=-+|-+++
T Consensus 93 ~-----v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 H-----VSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp ------HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred H-----HhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 1234567888998888888888877777776
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.73 E-value=76 Score=38.72 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=112.1
Q ss_pred eeCCCCEEEEE-eCCC----eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---------
Q 000697 1090 NELDVSLLLVA-SCNG----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------- 1155 (1348)
Q Consensus 1090 ns~d~~~L~tg-s~DG----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--------- 1155 (1348)
.++++++++.+ +..| .|+++|+.+ ++. +... +. .+.. ..+.|.+++..++....
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~~-l~d~---i~----~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLET--GKF-LPDG---IE----NPKF--SSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTT--TEE-EEEE---EE----EEES--EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCC--CcC-cCCc---cc----cccc--ceEEEeCCCCEEEEEEeCcccccccC
Confidence 38999988865 3333 599999976 321 1111 11 1111 12899999887776642
Q ss_pred --CCeEEEEECCCCcee-eeeecCCCCCC-eEEEEEecCCCCEEEEEeCC----CeEEEEECCCC----CeeeEeecCCC
Q 000697 1156 --VSSIMLWDLEKEQQM-VNPIPSSSDCS-ISALTASQVHGGQLAAGFVD----GSVRLYDVRTP----DMLVCSTRPHT 1223 (1348)
Q Consensus 1156 --Dg~IrVWDl~t~~~~-v~~l~~~~~~~-VtsL~~~s~dg~~LvsGs~D----G~VrvwDlr~~----~~~v~~~~~~~ 1223 (1348)
...|+.|.+.+.... ...+....... ...+ ..+.++++++..... ..|.+.|.... ...........
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-SRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-EE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-EecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776411 23344433332 4555 567888887754433 35788888874 11222221121
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCc--ceEEEecCCCCeEEEEEeCCCC-EEEEEeCCC--cE
Q 000697 1224 QQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKD--AYLTIDAHRGSLSALAVHRHAP-IIASGSAKQ--LI 1295 (1348)
Q Consensus 1224 ~h~~~I~sl~~sp~~~g~~LaSgs~---DG~I~IWDlr~~~~--~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg--~I 1295 (1348)
+....+... + +.+++.... ++.|.-.++..... ....+..+...+.-..+...+. +++....++ .|
T Consensus 278 ---~~~~~v~~~-~--~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 278 ---GVEYYVDHH-G--DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp ---S-EEEEEEE-T--TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred ---ceEEEEEcc-C--CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEE
Confidence 222333333 3 444444432 35677778776631 2335555665433333333444 444444444 58
Q ss_pred EEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1296 KVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1296 ~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
++++.. +.....+.. .. .+.|..+...+++.
T Consensus 352 ~v~~~~~~~~~~~~~~-p~------~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL-PE------AGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEETT-TEEEEEEES-SS------SSEEEEEES-TT-S
T ss_pred EEEECCCCcEEeeecC-Cc------ceEEeccCCCCCCC
Confidence 889988 777777765 32 24455555555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=87.66 E-value=68 Score=38.11 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=45.1
Q ss_pred ceEEEecCCCCeEEEEEeCC-------CCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1263 AYLTIDAHRGSLSALAVHRH-------APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spd-------g~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
++..+..| ..++.+.|... |.++++.-..+.|....++ +..+.. +..+.......+..+++.|||.+
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE----EEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE----EEEECTTSSS-EEEEEEETTSEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc----eEEccccCCCCceEEEEcCCCeE
Confidence 45555555 45677777643 4466655555677766644 322221 12222333458999999999999
Q ss_pred EEEEECCCeEE
Q 000697 1335 LAAGSADACVS 1345 (1348)
Q Consensus 1335 Latgs~Dg~I~ 1345 (1348)
+++.+.+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 98888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=87.33 E-value=42 Score=38.22 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred CeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE-
Q 000697 1181 SISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD- 1256 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWD- 1256 (1348)
.+.+. ..+++++.+++.. ....++++...... .... . ...++.-.|+++ +...+....+...+++.
T Consensus 25 ~~~s~-AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---~--g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSP-AVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---T--GGSLTRPSWDPD--GWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccce-EECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---c--CCccccccccCC--CCEEEEEcCCCceEEEEe
Confidence 36666 6778888777655 23345555443322 2211 1 247888899998 77777777677777774
Q ss_pred cCCCCcceEEEecC--CCCeEEEEEeCCCCEEEEEe---CCCcEEEEEc----CCceEEEEeccCCcccccccCCeEEEE
Q 000697 1257 IRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGS---AKQLIKVFSL----EGEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h--~~~VtsLa~spdg~~LasgS---~Dg~I~Vwd~----~g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
...+.......... .+.|+.+.++|||..+|.-. .++.|.|--+ +|.. ..+.. ...........+++++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~-~~l~~-~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP-RRLTG-PRRVAPPLLSDVTDVA 172 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc-ceecc-ceEecccccCcceeee
Confidence 23221122222222 12799999999999776654 3567776642 2311 11111 0001112236889999
Q ss_pred EeCCCCEEEEEEC
Q 000697 1328 FHPYQVLLAAGSA 1340 (1348)
Q Consensus 1328 fspdg~~Latgs~ 1340 (1348)
|.+++.+++.+..
T Consensus 173 W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 173 WSDDSTLVVLGRS 185 (253)
T ss_pred ecCCCEEEEEeCC
Confidence 9999988777655
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.18 E-value=0.79 Score=60.15 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHHhhccc
Q 000697 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 588 ~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~ 666 (1348)
+.+.|-..-. -.+|++++++-+|||+|+--..+ +=+.....|...++ .++|.||+=+|++||-|.=.
T Consensus 924 v~e~c~n~~~-------~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 924 VVEGCRNPGL-------FSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHhcCCCc-------CCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Q ss_pred CcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
..+.... ....|...+.|.+++||+.++..+++++..
T Consensus 992 fpnlie~-------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 992 FPNLIEP-------------------WTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred cccccch-------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHh
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.01 E-value=78 Score=38.13 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCeEEEEEEeeCCCCEEEEEe-----------CCC-eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1081 KGISKLCLVNELDVSLLLVAS-----------CNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs-----------~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.....|+| .++|.++++-. ..+ .|.+++..+..++....+ .+......... +++.+++
T Consensus 14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~---vfa~~l~~p~G----i~~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN---VFAEELSMVTG----LAVAVGG- 83 (367)
T ss_pred CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE---EeecCCCCccc----eeEecCC-
Confidence 35667888 67777666642 223 677776554344433221 12222222344 6666655
Q ss_pred eEEEEECCCeEEEEECCCC-----c--eeeeeecCC---CCCCeEEEEEecCCCCEEEEEeCC-----------------
Q 000697 1149 YLYASGEVSSIMLWDLEKE-----Q--QMVNPIPSS---SDCSISALTASQVHGGQLAAGFVD----------------- 1201 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~-----~--~~v~~l~~~---~~~~VtsL~~~s~dg~~LvsGs~D----------------- 1201 (1348)
++++......++.|.... + ..+..+... .......+ .+.++|.+.++-+..
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l-~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL-AWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc-eECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 666665554455565321 1 022223322 11225566 566788776654421
Q ss_pred --CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1202 --GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1202 --G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
|.|.-+|....+ . ..+ . .+ -.....++|++. |+.+++-..
T Consensus 162 ~~g~i~r~~pdg~~-~-e~~-a-~G-~rnp~Gl~~d~~--G~l~~tdn~ 203 (367)
T TIGR02604 162 LGGGLFRYNPDGGK-L-RVV-A-HG-FQNPYGHSVDSW--GDVFFCDND 203 (367)
T ss_pred cCceEEEEecCCCe-E-EEE-e-cC-cCCCccceECCC--CCEEEEccC
Confidence 445555555443 1 122 1 11 134568899998 888776443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.95 Score=35.97 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=33.8
Q ss_pred hHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
++.+...++.++...|+.+|++++++||.+++.||+.+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 455566688899999999999999999999999999874
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=27 Score=43.71 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=67.3
Q ss_pred CCCeEEEEECC--CeEEEEECCCCcee--eeeecCCCCCCeEEEEEecCCCCEEEEEeCCC---eEEEEECCCCCeeeEe
Q 000697 1146 QSGYLYASGEV--SSIMLWDLEKEQQM--VNPIPSSSDCSISALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1146 ~~~~Ll~gg~D--g~IrVWDl~t~~~~--v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG---~VrvwDlr~~~~~v~~ 1218 (1348)
++...++||.+ ..+..||..+++ - +..+...... . ++ ..-+|.+.+.|+.++ .+..||.++.+ -..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~r~~-~-~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~- 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKPRCN-P-AV--ASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQF- 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe-EEECCCCCCCCcc-c-EE--EEECCEEEEecCcCCCCccEEEEeCCCCE-EEe-
Confidence 44455555543 458889877654 2 2222221111 1 22 123678888888654 47788887654 111
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec---CCCCeEEEEEeCCCCEEEEEeCC---
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAK--- 1292 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~spdg~~LasgS~D--- 1292 (1348)
.............+.+ + +.+.+.| |.+.+||.++. ....+.. ..... +++.. ++++.+.|+.+
T Consensus 391 ~~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~-~~~v~-~~~IYviGG~~~~~ 459 (480)
T PHA02790 391 GPSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNP-ELIIV-DNKLLLIGGFYRGS 459 (480)
T ss_pred CCCCCCccccceEEEE--C--CEEEEEC---CceEEecCCCC--cEeEcCCCCCCcccc-EEEEE-CCEEEEECCcCCCc
Confidence 1111111111112222 2 6666666 45788998754 2222221 12222 22332 56777887754
Q ss_pred --CcEEEEEcCC
Q 000697 1293 --QLIKVFSLEG 1302 (1348)
Q Consensus 1293 --g~I~Vwd~~g 1302 (1348)
..|..||...
T Consensus 460 ~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 YIDTIEVYNNRT 471 (480)
T ss_pred ccceEEEEECCC
Confidence 2455666443
|
|
| >cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) | Back alignment and domain information |
|---|
Probab=86.85 E-value=4 Score=46.26 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhc-cC-CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchH
Q 000697 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRR-YA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPIS 227 (1348)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~-~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~ 227 (1348)
.+.|..-++.+.- ......|++.+++++.+..+.+ +. ..+=++|-|-|||.- |.|+--|. .++++.
T Consensus 34 ~~~l~~~f~~lgF--~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~-----~~l~~~D~-----~~v~l~ 101 (243)
T cd00032 34 AENLTKLFESLGY--EVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE-----GGIYGTDG-----DVVPID 101 (243)
T ss_pred HHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC-----CEEEEecC-----cEEEHH
Confidence 4555555555433 4567899999999999888774 33 445578889999963 77887774 467888
Q ss_pred hhhhhc---------CCCeEEEEeCCchhh
Q 000697 228 DLDSWL---------KTPSIYVFDCSAAGM 248 (1348)
Q Consensus 228 ~l~~~~---------~~p~~~v~dc~~ag~ 248 (1348)
||.+.+ |.|-|||+|..-...
T Consensus 102 ~i~~~f~~~~~~sl~~kPKl~~iqACRg~~ 131 (243)
T cd00032 102 EITSLFNGDNCPSLAGKPKLFFIQACRGDE 131 (243)
T ss_pred HHHHhhccCCCccccCCCcEEEEECCCCCc
Confidence 887666 468899999876543
|
Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.67 E-value=9.5 Score=49.75 Aligned_cols=347 Identities=16% Similarity=0.156 Sum_probs=181.0
Q ss_pred chhhHHHHHHHHHHHHhhccCCHHHHHHhhhhh--hHHHHHHHHHH-HHHHhhhcCCcccccCCCCCCCCCCchhhhHHH
Q 000697 337 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQD--LLVASLFRNFL-LAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413 (1348)
Q Consensus 337 ~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d--~~va~lfrnfl-la~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~ 413 (1348)
.+|++...+.. ++.++.+. ++|+.|-+-| .+....+-.+. +++-++..-.+.=...|.+=..-.-+.|..--+
T Consensus 260 ~l~~~a~~~~~---~~~~s~v~-~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~ 335 (759)
T KOG0211|consen 260 NLGNIAKVLES---EIVKSEVL-PTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYM 335 (759)
T ss_pred hhHHHHHHHHH---HHHHhhcc-HHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHH
Confidence 45555554443 66666554 5667665543 33322222222 222222221111122333333456677887777
Q ss_pred HHHHHHhcCccccCCCCCCcCCCcchHHhHhh---------------hHHHhcCCCCCCCC-CCchhhHHHHhhchhhHH
Q 000697 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTA---------------FEVWLDHGSEHKKP-PEQLPIVLQVLLSQCHRF 477 (1348)
Q Consensus 414 ~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Lta---------------fe~~L~~g~~~~~~-p~~lP~vLq~LlS~~~rl 477 (1348)
+.|.+. -|-..+....+..+....|.+++.- |+-++...+-..-+ -.+||++-.+..+.+.+.
T Consensus 336 ~~~~~~-~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 336 VADKFS-ELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred Hhhhhh-hHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH
Confidence 777665 2333222222223344455554421 44444422211101 146898877777777877
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCC
Q 000697 478 RALVLLGRFL-DMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSME 556 (1348)
Q Consensus 478 ral~ll~~Fl-d~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~ 556 (1348)
|+... -++ -+.|-.-.--.-.-..|-++.+|++-.++.|-=+.=+++.+..+....-.+.++.....- +....
T Consensus 415 r~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~----i~el~ 488 (759)
T KOG0211|consen 415 RSALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA----IVELA 488 (759)
T ss_pred HHHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh----hhhhc
Confidence 77654 111 111100000000112567777777655555533322225555444333333333222111 11111
Q ss_pred CchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccC
Q 000697 557 AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 636 (1348)
Q Consensus 557 ~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~ 636 (1348)
.....|.-.+|+-.+=+.-...|+. -+...+-..|..-|. |-+-++|..++..|..+...+. .+|. ...
T Consensus 489 ~d~~wRvr~ail~~ip~la~q~~~~-~~~~~~~~l~~~~l~-------d~v~~Ir~~aa~~l~~l~~~~G-~~w~--~~~ 557 (759)
T KOG0211|consen 489 EDLLWRVRLAILEYIPQLALQLGVE-FFDEKLAELLRTWLP-------DHVYSIREAAARNLPALVETFG-SEWA--RLE 557 (759)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhH-HhhHHHHHHHHhhhh-------hhHHHHHHHHHHHhHHHHHHhC-cchh--HHH
Confidence 1113444444443332211122211 134445566777777 7788999999999999998876 5553 333
Q ss_pred chhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 000697 637 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716 (1348)
Q Consensus 637 ~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l 716 (1348)
...+++.+..+++-.+|..+++++..|+...+ .+.. ...+...+..+..|+.|+||--++..|
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g---------------~ei~--~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG---------------QEIT--CEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHhc---------------cHHH--HHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 44478888888899999999999998885421 1111 233455677789999999999999999
Q ss_pred HHHHHh
Q 000697 717 ARFAFG 722 (1348)
Q Consensus 717 s~~~~~ 722 (1348)
-.++..
T Consensus 621 ~~i~~~ 626 (759)
T KOG0211|consen 621 PKILKL 626 (759)
T ss_pred HHHHhh
Confidence 888744
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.67 E-value=3.5 Score=50.56 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCC
Q 000697 569 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP 648 (1348)
Q Consensus 569 La~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~ 648 (1348)
......+.|+|-. +=.+.+..++.-+. .++--||.=+|=.|+.+.+...+.... +-....++|..-+-|.
T Consensus 75 ~~Y~~~~dpeg~~--~V~~~~~h~lRg~e-------skdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~DR 144 (885)
T COG5218 75 FEYDMPDDPEGEE--LVAGTFYHLLRGTE-------SKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFDR 144 (885)
T ss_pred HHhcCCCChhhhH--HHHHHHHHHHhccc-------CcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhcc
Confidence 3345567788722 34445555555565 677889999999999988765553322 2223445777777899
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhh-hccCCChhhHHHHHHHH
Q 000697 649 QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLT-VVSDGSPLVRAEVAVAL 716 (1348)
Q Consensus 649 sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~-~~~D~sp~VR~e~~~~l 716 (1348)
-|-||.++|++|..|-+-. . ..|..++..|+. +-+|+|.+||+.+..-+
T Consensus 145 E~~VR~eAv~~L~~~Qe~~------------~-------neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 145 EKAVRREAVKVLCYYQEME------------L-------NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hHHHHHHHHHHHHHHHhcc------------C-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 9999999999999996221 1 114444555544 35899999999887544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.83 Score=58.02 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCeEEEEEecCC-CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEE-----------EEeCCCCEEEEEeCCCc
Q 000697 1227 ERVVGISFQPGL-DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL-----------AVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1227 ~~I~sl~~sp~~-~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsL-----------a~spdg~~LasgS~Dg~ 1294 (1348)
..+.-|.|.|-- +.-++..+..+|.|++..+... ....+++|...++.+ .++|||.++|..+.||.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 344555554430 1467777788899998877643 234455565544433 37899999999999999
Q ss_pred EEEEE--cCCce----EEEEeccCCcccccccCCeEEEEEeCCC---------CEEEEEEC-CCeEEEcC
Q 000697 1295 IKVFS--LEGEQ----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ---------VLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd--~~g~~----l~~i~~~h~~f~~~~~~~Vtslafspdg---------~~Latgs~-Dg~I~IWd 1348 (1348)
+++|. +.|+. +...+. |++ ++-.|.-|+.+. .++++++. +..+++|.
T Consensus 259 v~f~Qiyi~g~~~~rclhewkp-hd~------~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKP-HDK------HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred cceeeeeeeccccHhhhhccCC-CCC------CCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 99998 55543 344555 441 333333354432 34555554 45677773
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.46 E-value=16 Score=43.94 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred eEEEEEecCCCCEEEEEe-----------CCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1182 ISALTASQVHGGQLAAGF-----------VDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs-----------~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
...| .+.++|+++++-. ..+ .|.+++-..+.-.......+.........+++.++ + +++ ++..
T Consensus 16 P~~i-a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~--G-lyV-~~~~ 90 (367)
T TIGR02604 16 PIAV-CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG--G-VYV-ATPP 90 (367)
T ss_pred Ccee-eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC--C-EEE-eCCC
Confidence 4555 4566777766642 223 67666544322111111011111245678899887 6 444 4444
Q ss_pred CcEEEEEcCCCC------c-ceEEEec----CCCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEE
Q 000697 1250 GDIQFLDIRNHK------D-AYLTIDA----HRGSLSALAVHRHAPIIASGSAK-------------------QLIKVFS 1299 (1348)
Q Consensus 1250 G~I~IWDlr~~~------~-~v~t~~~----h~~~VtsLa~spdg~~LasgS~D-------------------g~I~Vwd 1299 (1348)
...++.|..... + .+..+.. +......+.|.|+|.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 333344553211 1 1122322 13447789999999876654421 3455555
Q ss_pred cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1300 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1300 ~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.++..+..+.. .......++|+++|.++++-..
T Consensus 171 pdg~~~e~~a~--------G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLRVVAH--------GFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEEEEec--------CcCCCccceECCCCCEEEEccC
Confidence 55555544432 1134578999999988776443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=86.24 E-value=1e+02 Score=41.02 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=65.8
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-------CeEEEEEec---------------CCCCEEEEEeCCCeE
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQ---------------VHGGQLAAGFVDGSV 1204 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~-------~VtsL~~~s---------------~dg~~LvsGs~DG~V 1204 (1348)
++.+++++.++.|.-.|..+++ .+-.+...... ....+..+. ..+..++.++.||.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 5677777778888888888887 55444322110 011222221 134578889999999
Q ss_pred EEEECCCCCeeeEeecCC---------CCCCCCeEEEEEecCCCCCEEEEEEC----------CCcEEEEEcCCCCcceE
Q 000697 1205 RLYDVRTPDMLVCSTRPH---------TQQVERVVGISFQPGLDPAKIVSASQ----------AGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1205 rvwDlr~~~~~v~~~~~~---------~~h~~~I~sl~~sp~~~g~~LaSgs~----------DG~I~IWDlr~~~~~v~ 1265 (1348)
.-.|.++++.+ ..+... ......-..+.-.|--.+..+++|+. +|.|+-+|.+++ +.+-
T Consensus 273 iALDA~TGk~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl~W 350 (764)
T TIGR03074 273 IALDADTGKLC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-ALVW 350 (764)
T ss_pred EEEECCCCCEE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-cEee
Confidence 99999999844 222110 00000000111111101345666643 688999999998 4554
Q ss_pred EEe
Q 000697 1266 TID 1268 (1348)
Q Consensus 1266 t~~ 1268 (1348)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=86.09 E-value=99 Score=41.26 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=105.9
Q ss_pred ccccccCCCCCeEEEEEc---C--C--CCEEEEEECCCcEEEEECCC---------------CcEEEEeeCCCCCCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQ---P--F--SPIVVAADENERIKIWNYEE---------------DTLLNSFDNHDFPDKGIS 1084 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fs---p--d--g~~Latgs~dg~I~VWd~~t---------------~~~l~~~~~h~~~~~~It 1084 (1348)
...|....+.+|..|+|. . + .++|++=. ...+.|+..+- ...+..+..+...+....
T Consensus 71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred cceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 345876778999999998 2 1 23666554 55677776211 134455555555556888
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc------cccceEEEEecCCCeEEEEECCCe
Q 000697 1085 KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV------RCSNVVVDWQQQSGYLYASGEVSS 1158 (1348)
Q Consensus 1085 sL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V------~si~~~v~ws~~~~~Ll~gg~Dg~ 1158 (1348)
+++|. ..+...||+....|.-.||++...... ....++....+.+.+ .+.-..+.|..+...|++.+. ..
T Consensus 150 Dv~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~--~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 150 DVAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKR--KSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred eEEec-cCccceEEEEeccCcEEEEEecccccc--CCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 99994 346679999999999999999221110 011111122222222 111124789888788887764 45
Q ss_pred EEEEECCCCceeee-eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1159 IMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~-~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
+.++|+++.. ... -+.......|..+...+.+.++++.- ....|...|++..
T Consensus 226 l~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 8899999876 322 33333445588885444333333332 2367888888873
|
These proteins are found in fungi. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=85.95 E-value=89 Score=37.71 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=105.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC----------------
Q 000697 1041 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG---------------- 1104 (1348)
Q Consensus 1041 l~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG---------------- 1104 (1348)
...+++++.++-......|+--|+++.+....+.... ..+-...|+.+.|+..++..-...
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~---~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD---DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T---TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc---ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 4466888877666556788888999887766666555 455556675345666554332110
Q ss_pred ----eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC----e-EEEEECCCCceeeeeec
Q 000697 1105 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS----S-IMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1105 ----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg----~-IrVWDl~t~~~~v~~l~ 1175 (1348)
..+|..+....++.+.+. .....+.. +.|+|....+++-+..| . -|||-+++.......+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~------~~~~wlgH----~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVF------EDTDWLGH----VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp HC---EEEEEEETTT--EEEEE------EESS-EEE----EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred hhCCCceEEEEECCCCceeEEE------ecCccccC----cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 012222221123333321 11112222 67788888777765332 2 36776554321344444
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEe-----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1176 SSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1176 ~~~~~~VtsL~~~s~dg~~LvsGs-----~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
.+....+..=.++.++|..+.--+ .+..|.-+|..+.+.. ... .. .+..-...+++ |++++-=+.|.
T Consensus 233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~-~~----p~~~H~~ss~D--g~L~vGDG~d~ 304 (386)
T PF14583_consen 233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLM-EM----PWCSHFMSSPD--GKLFVGDGGDA 304 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEE-EE-----SEEEEEE-TT--SSEEEEEE---
T ss_pred cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEE-eC----CceeeeEEcCC--CCEEEecCCCC
Confidence 443333444458888888766422 2446777888877632 111 11 22223333455 77665433332
Q ss_pred ----------------cEEEEEcCCCCcceEEEecCC----------C-CeEEEEEeCCCCEE-EEEeCCCcEEEEE
Q 000697 1251 ----------------DIQFLDIRNHKDAYLTIDAHR----------G-SLSALAVHRHAPII-ASGSAKQLIKVFS 1299 (1348)
Q Consensus 1251 ----------------~I~IWDlr~~~~~v~t~~~h~----------~-~VtsLa~spdg~~L-asgS~Dg~I~Vwd 1299 (1348)
.|.++++..+. . ..+..|. . .=....|+|||+.+ .++...|...||-
T Consensus 305 p~~v~~~~~~~~~~~p~i~~~~~~~~~-~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 305 PVDVADAGGYKIENDPWIYLFDVEAGR-F-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ----------------EEEEEETTTTE-E-EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CccccccccceecCCcEEEEeccccCc-e-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 35567776542 2 2222221 1 12457899999954 5556677777764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.37 E-value=77 Score=36.51 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=108.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~ 1116 (1348)
-+..+.++ +++...+..+.-++|.|+.+...-.....-+ ....++.+.-.|++..++.-|.-+-+.|+.+ ..
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-----t~gyaygv~vsGn~aYVadlddgfLivdvsd-ps 159 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSD-PS 159 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-----CCceEEEEEecCCEEEEeeccCcEEEEECCC-CC
Confidence 34555565 4577777888889999998654433222222 1123333345889999998666677889876 23
Q ss_pred ceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEE
Q 000697 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1196 (1348)
Q Consensus 1117 ~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lv 1196 (1348)
++.+.- ........... ++. .|++-+++..|+-+.+-|+.....++..-.-..+..+.++ +.+++..+++
T Consensus 160 sP~lag---rya~~~~d~~~----v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv-~vsdnr~y~v 229 (370)
T COG5276 160 SPQLAG---RYALPGGDTHD----VAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV-SVSDNRAYLV 229 (370)
T ss_pred Cceeee---eeccCCCCcee----EEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE-EecCCeeEEE
Confidence 344431 12211221122 233 3778888888888999998876522221111122236777 4444443443
Q ss_pred EEeCCCeEEEEECCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1197 AGFVDGSVRLYDVRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1197 sGs~DG~VrvwDlr~~~~~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
. .+--+.+-|....+.. ..+...+ .....++.+.++ +++...+..+.-+.+-|+.+.
T Consensus 230 v--y~egvlivd~s~~ssp-~~~gsyet~~p~~~s~v~Vs----~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 V--YDEGVLIVDVSGPSSP-TVFGSYETSNPVSISTVPVS----GEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred E--cccceEEEecCCCCCc-eEeeccccCCcccccceecc----cceeeeeccccCceeEeccCC
Confidence 3 3444667777766522 2221111 111223333443 567777777777778888765
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.32 E-value=11 Score=42.92 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=107.1
Q ss_pred hhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
+..+.++.++.+|+..+. |..+..+.+.++.. ..|+..|..-.+.|....+..+|+ +++|.+|.-++-+|.
T Consensus 9 l~~~~l~~Ll~lL~~t~d-p~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-PFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHH
Confidence 444557788888886654 67888888888885 889999999999999999999999 899999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHh
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 698 (1348)
.|=.+.+... .++..+...+-.++.++ ..+|.-+.+=+|..+--. .++ .+.+. .....++
T Consensus 80 Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~------------~~~--~~~l~---~~i~~ll 140 (254)
T PF04826_consen 80 NLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT------------NDY--HHMLA---NYIPDLL 140 (254)
T ss_pred hcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC------------cch--hhhHH---hhHHHHH
Confidence 8865543322 25555554444455543 567777888888877411 111 11221 1233456
Q ss_pred hhccCCChhhHHHHHHHHHHHH
Q 000697 699 TVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 699 ~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
.+...|+..+|..++..|..+.
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhc
Confidence 6777788888888877776544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.11 E-value=36 Score=37.54 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=88.6
Q ss_pred CEEEEEECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC------eEEEEeccCCCCcee
Q 000697 1048 PIVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG------NIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~--t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG------~IrIWdl~~~~~~~~ 1119 (1348)
+.|..+.....|.+|++. ..+.+.+|..-. .|..+.+ +..|++|+|--.+. .+|+|-.-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~----~V~~l~y--~~~GDYlvTlE~k~~~~~~~fvR~Y~NW------- 95 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG----RVLQLVY--SEAGDYLVTLEEKNKRSPVDFVRAYFNW------- 95 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchh----heeEEEe--ccccceEEEEEeecCCccceEEEEEEEh-------
Confidence 445444557789999988 346677777654 8999999 67899999974332 56665331
Q ss_pred EEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe
Q 000697 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1120 lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
+.......+++. .++ |+-+.++..+.. ..+..+.+++. ..++.++++.+..|+++++.
T Consensus 96 -----r~~~~~~~~v~v---Ria-----G~~v~~~~~~~~------~~qleiiElPl--~~~p~ciaCC~~tG~LlVg~- 153 (215)
T PF14761_consen 96 -----RSQKEENSPVRV---RIA-----GHRVTPSFNESS------KDQLEIIELPL--SEPPLCIACCPVTGNLLVGC- 153 (215)
T ss_pred -----hhhcccCCcEEE---EEc-----ccccccCCCCcc------ccceEEEEecC--CCCCCEEEecCCCCCEEEEc-
Confidence 111112222221 000 111111111111 11102334443 33478888888899887743
Q ss_pred CCCeEEEEECCCCCeee---EeecCCC----CC--CCCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 000697 1200 VDGSVRLYDVRTPDMLV---CSTRPHT----QQ--VERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1257 (1348)
Q Consensus 1200 ~DG~VrvwDlr~~~~~v---~~~~~~~----~h--~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDl 1257 (1348)
++++.+|.++...... ..+ .+. .| +-....+++. +.++|..+. -.++++.+
T Consensus 154 -~~~l~lf~l~~~~~~~~~~~~l-DFe~~l~~~~~~~~p~~v~ic----~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 154 -GNKLVLFTLKYQTIQSEKFSFL-DFERSLIDHIDNFKPTQVAIC----EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred -CCEEEEEEEEEEEEecccccEE-echhhhhheecCceEEEEEEE----eeEEEEecC-CEEEEEEE
Confidence 5688899876443101 111 110 11 1224566665 447776654 46666654
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.63 E-value=41 Score=45.18 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchH
Q 000697 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684 (1348)
Q Consensus 605 d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~ 684 (1348)
-..+.+++..+++++++..++...-.-..=..+.+.+.-.|...+|+||.+||=++..+|..-. +.
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p--------------e~ 861 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP--------------EE 861 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC--------------HH
Confidence 3468888888999999997654432222223334456667889999999999999999994421 11
Q ss_pred HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhcchhHHHH
Q 000697 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSI 730 (1348)
Q Consensus 685 ~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~ 730 (1348)
-.......+.-.++.+..|..-.||..+...+-+++.+|.-..+..
T Consensus 862 ~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 1223455567778889999999999999999999999887655544
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=1.1e+02 Score=36.53 Aligned_cols=279 Identities=11% Similarity=0.025 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCC-CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~-~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
...+.+|.|.....-+++|. +|. ||...++ +.-....... .....+.++.| .. +..+++ +..|.| |.-.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~--~~-~~~~~~-G~~g~i--~~S~ 115 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISF--KG-DEGWIV-GQPSLL--LHTT 115 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEE--cC-CcEEEe-CCCceE--EEEC
Confidence 35788999986666677775 443 4444332 2211111100 01135778877 22 333444 455543 3333
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+.....+.+..-..+.++. .. .... ..+.+++++..|.|..=+- .++ .-..+.......+.++ ...+++
T Consensus 116 DgG~tW~~~~~~~~~~~~~---~~---i~~~--~~~~~~~~g~~G~i~~S~D-gG~-tW~~~~~~~~g~~~~i-~~~~~g 184 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPGSP---YL---ITAL--GPGTAEMATNVGAIYRTTD-GGK-NWEALVEDAAGVVRNL-RRSPDG 184 (334)
T ss_pred CCCCCCeEccCCcCCCCCc---eE---EEEE--CCCcceeeeccceEEEECC-CCC-CceeCcCCCcceEEEE-EECCCC
Confidence 3112222210000011111 11 1222 2233444555554433221 222 1122222223347787 455666
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-- 1270 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-- 1270 (1348)
.++ ..+..|.+..- .+.+......... .-...++++.+.++ ++.+++| ..|.+.+=....+ ........+
T Consensus 185 ~~v-~~g~~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d~G-~sW~~~~~~~~ 256 (334)
T PRK13684 185 KYV-AVSSRGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPDDL-ESWSKPIIPEI 256 (334)
T ss_pred eEE-EEeCCceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCC--CCEEEEe-cCCEEEEccCCCC-CccccccCCcc
Confidence 555 44556655432 1122111111111 22367889999988 7776665 4576643223332 222222211
Q ss_pred --CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1271 --RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1271 --~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+.++.+++++.++++| .+|.|..=.-.|+.-...+. ... .......+.|..++..+++| ..|.|-.|+
T Consensus 257 ~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~-~~~----~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 257 TNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPV-GEE----VPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred ccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCc-CCC----CCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 2357889999988876665 45655432233444333322 111 11357788888777776655 577776653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.10 E-value=52 Score=42.53 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=124.3
Q ss_pred CCchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChh---
Q 000697 460 PEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS--- 534 (1348)
Q Consensus 460 p~~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~--- 534 (1348)
|.-+|=|-.+|+.+ .-|.||++-+.||+-..|--+.. +.+-+-++|-+..+-.-.-.+-+...+|...+.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 35678888888874 57889999999999777754443 345555666543211111122333344444221
Q ss_pred ----hhhhhhh------ccCh------------------hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhh
Q 000697 535 ----CQVDLVK------DGGH------------------AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586 (1348)
Q Consensus 535 ----~q~~l~k------~~~~------------------~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~ 586 (1348)
|..++++ .++| -+++++|...+. +-.-..+=||++++.+-...+.++ +.
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdsskN~G-nA 292 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAG-NA 292 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccch-hH
Confidence 1111111 0000 123333332221 111122235666655544433321 11
Q ss_pred chHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH-HHhh---------hccCch----hhhhhhccCCCHHH
Q 000697 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA-QTIG---------RRADAP----AIYVPLLSEPQPEV 652 (1348)
Q Consensus 587 ~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~-~~~~---------~~~~~~----~~l~~ll~D~sP~V 652 (1348)
-+++-....+. ..+++.||-.++-+||+|+.+.+.. |.++ .+..+. ..++.+|+|+.+-.
T Consensus 293 ILYE~V~TI~~------I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 293 ILYECVRTIMD------IRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred HHHHHHHHHHh------ccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 22332222222 2678999999999999999775432 2222 223332 36899999999999
Q ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 653 RASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 653 Raa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
|..++=.+-.++.. . . =..+...|+..+.-..+.++.+++..+..++.+|
T Consensus 367 krralELs~~lvn~-------------~----N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 367 KRRALELSYALVNE-------------S----N----VRVMVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHhcc-------------c----c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 99887666666621 0 0 1123445556555557788888887777777776
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.77 E-value=4.8 Score=49.13 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=86.9
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHh-hcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 000697 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH-LQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1348)
Q Consensus 547 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~-l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~ 625 (1348)
|.-..|.+.+ +.+|.--+|-+|.-..+-- +.+++..++.. .+ |.+-.||.+++++||-.|-+.
T Consensus 520 ~I~ell~d~d--s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avs-------D~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 520 YINELLYDKD--SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVS-------DGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred HHHHHhcCch--HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecc-------cCchHHHHHHHHheeeeEecC
Confidence 3334444444 5888877777766543221 33445555554 44 778899999999999887553
Q ss_pred hHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCC
Q 000697 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGS 705 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~s 705 (1348)
..+ +...+-.|.+.-.|-||+...+|||-+....+ .+.....|-.+..|+.
T Consensus 584 ~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G---------------------~~~a~diL~~L~~D~~ 634 (926)
T COG5116 584 RDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTG---------------------DKVATDILEALMYDTN 634 (926)
T ss_pred cch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCc---------------------cHHHHHHHHHHhhCcH
Confidence 321 22233333455689999999999998884321 0111222334678999
Q ss_pred hhhHHHHHHHHHHHHHhcchh
Q 000697 706 PLVRAEVAVALARFAFGHKQH 726 (1348)
Q Consensus 706 p~VR~e~~~~ls~~~~~~~~~ 726 (1348)
..||+.+.++++.+..++...
T Consensus 635 dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 635 DFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999888776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1348 | ||||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-08 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-04 |
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1348 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.004 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 3e-14
Identities = 38/235 (16%), Positives = 63/235 (26%), Gaps = 19/235 (8%)
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
R AL LL + A D G+ V + L+ LR + +
Sbjct: 33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
Q ++ G +R LD R A F ++ +V G + V
Sbjct: 93 IQEQVLGLGALRKLLRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL-- 149
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
M Q L L E + V L+
Sbjct: 150 -----MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGD-----------EECDDDEKIRAEISIIRSLL 698
+ +L +L+ R+ E + + E+ + E+ LL
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 4e-14
Identities = 43/317 (13%), Positives = 97/317 (30%), Gaps = 43/317 (13%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104
P ++V+A E+ IK+W+YE + H + ++ +
Sbjct: 27 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS----------------VQDISFDHS 70
Query: 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1164
+ + G + V ++ ++ +I +W++
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1165 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML--------- 1215
+ + + G +A+ D +VR++ V T +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQ---DGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1216 -----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270
++ E + + G ++S S+ I+ D+ +T+ H
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGH 246
Query: 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329
+ + H I S + + ++V+ + + T+ H V L FH
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--------HFVTSLDFH 298
Query: 1330 PYQVLLAAGSADACVSI 1346
+ GS D V +
Sbjct: 299 KTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 1e-07
Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 29/179 (16%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--------- 1095
++ + ++ +++W H + IS + +S
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 1096 ------LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149
LL S + I++W L GH VR V + +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-------VGHDNWVRG----VLFHSGGKF 261
Query: 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208
+ + + ++ +WD + ++ M ++ + +++L + + G VD +V++++
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMK--TLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.1 bits (162), Expect = 5e-12
Identities = 54/321 (16%), Positives = 116/321 (36%), Gaps = 28/321 (8%)
Query: 1046 FSP--IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL---LVA 1100
FS +A N+ +++ + +L+ + +K L + L +
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160
S +G D+ + + + + + + + + SG+ + +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VR 188
Query: 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT---PDMLVC 1217
+WDL Q + ++ S G +AAG +D +VR++D T + L
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTV---AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 1218 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY-----------LT 1266
T + V + F D +VS S ++ +++N + +T
Sbjct: 246 ENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNC 1325
H+ + ++A ++ I SGS + + + + G L ++ H S ++ + N
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS--VAVANG 361
Query: 1326 LTFHPYQVLLAAGSADACVSI 1346
+ P + A GS D I
Sbjct: 362 SSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 43/324 (13%), Positives = 92/324 (28%), Gaps = 43/324 (13%)
Query: 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS---LLLVASCNG 1104
P + N+ ++N ++ + + V + S L CN
Sbjct: 29 PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV-----VCCVKFSNDGEYLATGCNK 83
Query: 1105 NIRIWKDYDQKDKQKL-----------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1153
++++ D +L SS +R V + G A+
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS----VCFSP-DGKFLAT 138
Query: 1154 GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
G ++ + +++V + S +G VR D
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWD 191
Query: 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTI 1267
+ + V ++ PG I + S ++ D +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESG 250
Query: 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKI-----GS 1322
H+ S+ ++ R + SGS + +K+++L+ + S +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 1323 VNCLTFHPYQVLLAAGSADACVSI 1346
V + + +GS D V
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 7e-07
Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQM-----VNPIPSSSDCSISALTASQVHGGQLAA 1197
Y+ A ++ +WD E + N + S+ ++ ++ G + +
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 271
Query: 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVER--------VVGISFQPGLDPAKIVSASQA 1249
G +D SV+L++++ + S P++ E V+ ++ + I+S S+
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKD 329
Query: 1250 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV------HRHAPIIASGSAKQLIKVFSLE 1301
+ F D ++ + HR S+ ++AV + A+GS +++ +
Sbjct: 330 RGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 1e-06
Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK--L 1086
+ + T A+ + A + +++W+ E L+ D+ + G
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 1087 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQ 1145
+V D ++ S + ++++W + +K T S V+ V Q
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1146 QSGYLYASGEVSSIMLWDLEKEQQM---------VNPIPSSSDCSISALTASQVHGGQLA 1196
Y+ + + ++ WD + + V + ++ S+ A
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP------EYNVFA 372
Query: 1197 AGFVDGSVRLYDVR 1210
G D R++ +
Sbjct: 373 TGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 18/261 (6%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L N ++ + +++ H V C V + YL A+G
Sbjct: 31 ALKKQTNDYYILY---NPALPREIDVELHKSLDHTSVVCC----VKFSNDGEYL-ATGCN 82
Query: 1157 SSIMLWDLEKEQQ---MVNPIPSSSDCSISALTASQVHGGQLAA------GFVDGSVRLY 1207
+ ++ + + + ++ D ++S + + G +
Sbjct: 83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142
Query: 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267
+ + Q S K+VS S ++ D+ LT+
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTL 201
Query: 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1327
G + IA+GS + ++V+ E L SV +
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261
Query: 1328 FHPYQVLLAAGSADACVSIHS 1348
F + +GS D V + +
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWN 282
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK-------LCLVNELDVSLL 1097
VV+ + +K+WN + + + ++ L + + +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGE 1155
L S + + W D+K L+ +QGH+ V V +
Sbjct: 324 LSGSKDRGVLFW---DKKSGNPLLM----LQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 1156 VSSIMLWDLEK 1166
+W +K
Sbjct: 377 DCKARIWKYKK 387
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 5e-11
Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250
+G D S +L+DVR + H + I F P + + S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDIN---AICFFP--NGNAFATGSDDA 248
Query: 1251 DIQF-LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1308
+ + + + D +++++ + ++ +G V+ ++ G +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346
H V+CL + +A GS D+ + I
Sbjct: 309 AGHD--------NRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 1136 CSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194
+V+ L+ SG +S LWD+ + S I+A+ +G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFP-NGNA 240
Query: 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254
A G D + RL+D+R T H + + +SF +++ +
Sbjct: 241 FATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNV 296
Query: 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299
D A + H +S L V +A+GS +K+++
Sbjct: 297 WDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.0 bits (97), Expect = 4e-04
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 17/121 (14%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
F P ++ ++++ D +HD GI+ + LLL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162
+ N +W D + + GH V C + + S + +W
Sbjct: 291 DFNCNVW---DALKADRAGV----LAGHDNRVSC----LGVTDDGMAVATGSWDSFLKIW 339
Query: 1163 D 1163
+
Sbjct: 340 N 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 0.001
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1088
G + +++A ++ +W+ + H D +S L +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVSCLGV 320
Query: 1089 VNELDVSLLLVASCNGNIRIW 1109
+ D + S + ++IW
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-10
Identities = 42/323 (13%), Positives = 97/323 (30%), Gaps = 37/323 (11%)
Query: 1040 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--------------------FP 1079
LQ +V+ ++ +K+W+ L + H
Sbjct: 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 79
Query: 1080 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNV 1139
++ C +D V + Q +
Sbjct: 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139
Query: 1140 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199
V Q + + + +WD E E + ++ Q G + +G
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-----QFDGIHVVSGS 194
Query: 1200 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259
+D S+R++DV T + + T G+ + + +VS + ++ DI+
Sbjct: 195 LDTSIRVWDVETGNCI----HTLTGHQSLTSGMELKDNI----LVSGNADSTVKIWDIKT 246
Query: 1260 HKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQ 1318
+ ++ + + + + + S +K++ L+ GE + +
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---SGG 303
Query: 1319 KIGSVNCLTFHPYQVLLAAGSAD 1341
G V + +++ A GS +
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.002
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1088
C T + T+ ++ I+V+ + + +KIW+ + L + + ++ L
Sbjct: 209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 1089 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148
++ +S +G +++W + + LVT S G V + +
Sbjct: 269 NKNFVIT----SSDDGTVKLWDLKTGEFIRNLVTLESG--GSGGVVWR----IRA-SNTK 317
Query: 1149 YLYASG-----EVSSIMLWDLEKE 1167
+ A G E + +++ D + +
Sbjct: 318 LVCAVGSRNGTEETKLLVLDFDVD 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 43/266 (16%)
Query: 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM------ 1170
K + TA ++ + H + V + + + + +WD +
Sbjct: 1 KVFIATA-NAGKAHDADIFS--VSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53
Query: 1171 ----VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226
V+ + A+ +A G + Y + D +
Sbjct: 54 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113
Query: 1227 ER------VVGISFQPGLDPAK---IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1277
+ + + D +V+ G D ++ + L
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 1278 AVHRHAP----------------IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIG 1321
+P +IA+G +++ L + S +
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI-NNSN 232
Query: 1322 SVNCLTFHPYQVLLAAGSADACVSIH 1347
S+ + F P LLA
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCI 258
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 4e-06
Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 33/384 (8%)
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
+ QR D +N++L + S S + + W
Sbjct: 68 DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPE 127
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
++ + + + + + + ++ + + + S
Sbjct: 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 187
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIF-PYVLKLLQTTTPELRQILVFIWTKILALD 532
+ A L L+ D V + Q +R + KI++L
Sbjct: 188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247
Query: 533 KSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 592
+ A I + S E + + D EA
Sbjct: 248 YQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 305
Query: 593 LKHLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA----------- 639
+H A P+ Q L +D
Sbjct: 306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 365
Query: 640 ---IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 696
+ P R +AV + G +L E + + I + +
Sbjct: 366 VLPFIKEHIKNPDWRYRDAAVMAFGCIL--------------EGPEPSQLKPLVIQAMPT 411
Query: 697 LLTVVSDGSPLVRAEVAVALARFA 720
L+ ++ D S +VR A + R
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC 435
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 40/286 (13%), Positives = 76/286 (26%), Gaps = 46/286 (16%)
Query: 1043 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD------FPDKGISKLCLVNELDVSL 1096
LQ +V+ + IKIW+ H D+ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKL-----------------VTAFSSIQGHKPGVRCSNV 1139
+ N I + + + + I + V
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 1140 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199
V Y+ ++ +I +W+ + + + Q + +G
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-----LQYRDRLVVSGS 195
Query: 1200 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259
D ++RL+D+ L + D +IVS + G I+ D+
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEE--------LVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 1260 HKDAYL--------TIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1297
D T+ H G + L I S S I +
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 24/154 (15%)
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
IK+WN + + + H + L++ S + IR+W
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRG-------IACLQYRDRLVVSGSSDNTIRLWD-------- 204
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
+ +V + + + + I +WDL P +
Sbjct: 205 -----IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 1179 DCSI----SALTASQVHGGQLAAGFVDGSVRLYD 1208
++ + Q Q+ + D ++ ++D
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 4e-05
Identities = 28/332 (8%), Positives = 66/332 (19%), Gaps = 49/332 (14%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
++ + + + + DT+ S D + D V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNN 59
Query: 1103 NGN-IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161
+ I D D S + +YA+ + +
Sbjct: 60 HYGDIYGI-DLDTCKNTFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLN 114
Query: 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221
+ + ++ + + D + T
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK 174
Query: 1222 HTQQV---ERVVGISF------------------------QPGLDPAKIVSASQAGDIQF 1254
+T + + D +A
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234
Query: 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1314
+D++ K P G +L K + + + H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH-- 292
Query: 1315 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346
+ C+ F L G +++
Sbjct: 293 -------TYYCVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVH 1280
H+ VE + ++ D +I ++ + +K + + H G ++ +
Sbjct: 3 HSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 1281 RHAPIIASGSAKQLIKVFS 1299
+ I + + V++
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 0.001
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1275 SALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331
S A ++ IA + ++ G Q+ ++ H+ G V + + P
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--------GQVTGVDWAPD 62
Query: 1332 QVLLAAGSADACVSIHS 1348
+ D + +
Sbjct: 63 SNRIVTCGTDRNAYVWT 79
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 10/78 (12%)
Query: 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF 1328
H + +L S L+ + G + + SV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---------SSVLSCDI 314
Query: 1329 HPYQVLLAAGSADACVSI 1346
+ GS D ++
Sbjct: 315 SVDDKYIVTGSGDKKATV 332
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 0.001
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250
G ++A+ D ++++++V T + + T+ ++ +GI + +VS S G
Sbjct: 249 DGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIW----TKQALVSISANG 303
Query: 1251 DIQFLDI 1257
I F++
Sbjct: 304 FINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.5 bits (90), Expect = 0.002
Identities = 32/306 (10%), Positives = 72/306 (23%), Gaps = 28/306 (9%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101
+P I + + T + H
Sbjct: 25 NTPAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTT-----VAKTSPSGYYCASGD 77
Query: 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161
+GN+RIW ++I V+ + + ++ + + L
Sbjct: 78 VHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
Query: 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221
+D + + + + V +
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR 1281
H+ + + G D ++ G + + + G
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL----TWSP 248
Query: 1282 HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340
IAS SA + IK++++ + TI L + L + SA
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-------EDQQLGIIWTKQALVSISA 301
Query: 1341 DACVSI 1346
+ ++
Sbjct: 302 NGFINF 307
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202
S G ++I +WD+ + + + G++ + +DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 1203 SVRLYDV 1209
++ Y++
Sbjct: 319 TLNFYEL 325
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.004
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRA 563
P ++ L + + + I + D+S + + + GG + L S +
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQ 62
Query: 564 MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623
AA L +V + I + L+ + + Q L L L E
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK---QLTGLLWNLSSTDE 119
Query: 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDD 683
E A + +P S + R+ D
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 684 DEKIRAEISIIRSLL 698
I + + +
Sbjct: 180 MRNYSGLIDSLMAYV 194
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 22/279 (7%)
Query: 1079 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSN 1138
P IS + ++ SLLL+ S +G++ ++K Q L+ + +K + C
Sbjct: 10 PKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLC-- 61
Query: 1139 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198
++ + G + ++ ++++ ++ + +L A
Sbjct: 62 --CNFIDNTDLQIYVGT-VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258
DG + + D R V + + +V F + ++++ +Q+ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 1259 NHKDAYLTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSF 1315
+D TI + + A S + V + + +F
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 1316 MAQK--------IGSVNCLTFHPYQVLLAAGSADACVSI 1346
+ VN + F P L +D +S
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1348 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.68 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.67 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.56 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.52 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.5 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.32 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.27 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.09 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.07 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.83 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.81 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.77 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.74 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.66 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.64 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.47 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.47 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.32 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.22 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.15 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.11 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.84 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.78 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.78 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.69 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.67 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.65 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.63 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.56 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.5 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.38 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.22 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.18 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.08 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.21 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.13 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.78 | |
| d1nw9b_ | 277 | Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | 94.67 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 94.33 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.17 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.9 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.51 | |
| g1sc3.1 | 261 | Interleukin-1beta converting enzyme (a cysteine pr | 90.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.14 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 88.94 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 88.19 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.78 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.95 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 83.99 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-35 Score=270.12 Aligned_cols=281 Identities=15% Similarity=0.236 Sum_probs=238.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEE
Q ss_conf 67899828999958999999997899499998799938-----8896279999998379999860899899999689829
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~-----i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~I 1106 (1348)
..|...|++++|+|++++|++|+ ||.|+|||+.+... .....+|. ..|.+++| ++++.+|++|+.||.|
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~---~~I~~v~~--s~dg~~l~s~~~dg~i 121 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD---NYIRSCKL--LPDGCTLIVGGEASTL 121 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT---SBEEEEEE--CTTSSEEEEEESSSEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCCC
T ss_conf 79999289999989999999997-998899773677633116876404889---96899998--6799889886123321
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 99834577785058850102357899621250489993599969999879829999877896035531599999817999
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~ 1186 (1348)
++|++... ..+.. ..+..|...+.. +.|++++..+++++.++.|++||+.+++ +......+... |+++
T Consensus 122 ~iwd~~~~--~~~~~---~~~~~~~~~v~~----~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~-v~~l- 189 (337)
T d1gxra_ 122 SIWDLAAP--TPRIK---AELTSSAPACYA----LAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI- 189 (337)
T ss_dssp EEEECCCC----EEE---EEEECSSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-
T ss_pred CCCCCCCC--CCCCC---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-
T ss_conf 11111111--11111---111111111111----1111111111111111111111111111-11111111111-1101-
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf 76499999999967980999988899702574157887887859999922999999999978993999986889731699
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~t 1266 (1348)
.+++++..+++|+.||.|++||+++++ .+..+ .+...|.+++|+|+ +..+++|+.||.+++||++.. .. ..
T Consensus 190 ~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~----~~~~~i~~l~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~-~~ 260 (337)
T d1gxra_ 190 DISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH----DFTSQIFSLGYCPT--GEWLAVGMESSNVEVLHVNKP-DK-YQ 260 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTE-EEEEE----ECSSCEEEEEECTT--SSEEEEEETTSCEEEEETTSS-CE-EE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCC----CCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCC-CC-CC
T ss_conf 234443211223566553211111100-00024----66661579997153--030000002564211111111-10-00
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 9058998699999079999999967990999976-992689994557864545667838999947997999998898099
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1345 (1348)
Q Consensus 1267 l~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~ 1345 (1348)
...|...|++++|+|++.+|++++.|+.|++||. +++.+..+. |. +.|++++|+|++++|++|+.||.|+
T Consensus 261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~-------~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ES-------SSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS-------SCEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC--CC-------CCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 01245654169998999999999489969999899997999926--99-------9879999927999999990899699
Q ss_pred ECC
Q ss_conf 929
Q 000697 1346 IHS 1348 (1348)
Q Consensus 1346 IWd 1348 (1348)
||+
T Consensus 332 vWd 334 (337)
T d1gxra_ 332 VYE 334 (337)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-34 Score=266.36 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=240.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---------------CCCCEEEEEEEEECCCCEE
Q ss_conf 7899828999958999999997899499998799938889627999---------------9998379999860899899
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF---------------PDKGISKLCLVNELDVSLL 1097 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~---------------~~~~ItsI~f~ns~d~~~L 1097 (1348)
.|...|++++|+|+|.+|++|+ |+.|+|||..+++.+..+..+.. ....|++++| ++++.+|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~~l 136 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFL 136 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE--CCCCCCC
T ss_conf 9999689999999999999994-994899981364057663166544324432111014677898899998--8999801
Q ss_pred EEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99968982999834577785058850102357899621250489993599969999879829999877896035531599
Q 000697 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177 (1348)
Q Consensus 1098 vtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~ 1177 (1348)
++|+.||.|++|+... ++.. ....+|...+.+ +.|++++..+++++.++.+++||.++.. .......+
T Consensus 137 ~s~~~dg~v~i~~~~~--~~~~-----~~~~~h~~~v~~----~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~ 204 (388)
T d1erja_ 137 ATGAEDRLIRIWDIEN--RKIV-----MILQGHEQDIYS----LDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE 204 (388)
T ss_dssp EEEETTSCEEEEETTT--TEEE-----EEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECS
T ss_pred EECCCCCCCCCCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCCC
T ss_conf 2134441111211111--1111-----111111111111----0111111111122210156541011111-10000124
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 9998179997649999999996798099998889970257415----788788785999992299999999997899399
Q 000697 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR----PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~----~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~ 1253 (1348)
. . ..++.+++.+++++++|+.||.|++||.++.... ..+. ...+|...|.++.|+|+ +..|++|+.||.|+
T Consensus 205 ~-~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~d~~i~ 279 (388)
T d1erja_ 205 D-G-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV-ERLDSENESGTGHKDSVYSVVFTRD--GQSVVSGSLDRSVK 279 (388)
T ss_dssp S-C-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE-EEEC------CCCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred C-C-CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC-EEECCCCCCCCCCCCCEEEEEECCC--CCEEEEEECCCCEE
T ss_conf 5-4-4211236887875899738981999634557300-0102443334577898789999799--99999997899289
Q ss_pred EEECCCCC-----------CCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99868897-----------31699905899869999907999999996799099997-6992689994557864545667
Q 000697 1254 FLDIRNHK-----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIG 1321 (1348)
Q Consensus 1254 IWDlr~~~-----------~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~~h~~f~~~~~~ 1321 (1348)
+||++... ........|...|++++|+|++.+|++|+.||.|++|| .+++.+.++++ |. +
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~-------~ 351 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HR-------N 351 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CS-------S
T ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CC-------C
T ss_conf 875157764321013444200110124553278999889999999996989799999999969999968-89-------9
Q ss_pred CEEEEEE------ECCCCEEEEEECCCEEEECC
Q ss_conf 8389999------47997999998898099929
Q 000697 1322 SVNCLTF------HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1322 ~Vtslaf------spdg~~Latgs~Dg~I~IWd 1348 (1348)
.|.++++ +|++.+|++|+.||+|+||+
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 789999846742589999999991899799976
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-34 Score=262.82 Aligned_cols=285 Identities=19% Similarity=0.340 Sum_probs=251.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..|...|++++|+|++++|++|+.||+|+|||+++++.+.++.+|. ..|.++.| ++++.++++++.++.+.+|+.
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISF--DHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCCCEEET
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--ECCCCCCCCCCCCCCCCCCCC
T ss_conf 5888876899993898999999389929999899997999995788---86777763--011110111111111011100
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57778505885010235789962125048999359996999987982999987789603553159999981799976499
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .... ..+.+|...+.+ +.|++++..+++++.|+.+++||++++. .+..+..+... +.++ .+.++
T Consensus 89 ~~--~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~ 154 (317)
T d1vyhc1 89 QG--FECI-----RTMHGHDHNVSS----VSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREW-VRMV-RPNQD 154 (317)
T ss_dssp TS--SCEE-----ECCCCCSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EECTT
T ss_pred CC--CCCC-----CCCCCCCCCCEE----EECCCCCCEEEEECCCCCEEEEECCCCE-EEEEECCCCCC-CEEE-ECCCC
T ss_conf 11--1111-----110000000000----0016998557765267523575114430-34687167776-3000-01667
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC------------------CCCCEEEEEECCCCEE
Q ss_conf 9999999679809999888997025741578878878599999229------------------9999999997899399
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------------------LDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1192 g~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~------------------~~g~~LvSgs~DG~I~ 1253 (1348)
+.++++++.||.|++|+.+... ....+. +|...+.++.+.+. ..+..+++|+.||.|+
T Consensus 155 ~~~l~~~~~d~~v~~~~~~~~~-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 230 (317)
T d1vyhc1 155 GTLIASCSNDQTVRVWVVATKE-CKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230 (317)
T ss_dssp SSEEEEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCEEEEEECCCEEEEEEECCCE-EEEEEE---CCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEE
T ss_conf 9999999279829997512540-347882---477873379986325641110345630343025886147516997899
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 9986889731699905899869999907999999996799099997-699268999455786454566783899994799
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1254 IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
+||.+++ .++.++.+|...|++++++|++.+|++|+.||.|++|| .+++.+..+.. |. +.|++++|+|++
T Consensus 231 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~-------~~V~~~~~s~~~ 301 (317)
T d1vyhc1 231 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HE-------HFVTSLDFHKTA 301 (317)
T ss_dssp EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CS-------SCEEEEEECSSS
T ss_pred EEECCCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEECCCC
T ss_conf 9888999-68899968899879999879999999997989499999999919999928-99-------988999994999
Q ss_pred CEEEEEECCCEEEECC
Q ss_conf 7999998898099929
Q 000697 1333 VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1333 ~~Latgs~Dg~I~IWd 1348 (1348)
.+|++|+.||+|+||+
T Consensus 302 ~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 302 PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999992899499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.3e-33 Score=252.45 Aligned_cols=286 Identities=15% Similarity=0.256 Sum_probs=241.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..|...|++++|+|++++|++|+.||.|+|||..+++.+..+..|. ..|.+++| ++++.++++|+.|+.+++|+.
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAY--APSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC---SCEEEEEE--CTTSSEEEEEETTCCEEEEES
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CCEEEEEE--ECCCEEEEEECCCCEEECCCC
T ss_conf 8878988899998999999999789955563102102579972465---33775676--012114431013320101332
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57778505885010235789962125048999359996999987982999987789603553159999981799976499
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.......... ..+.+|...... ..+ ..+..+.....+.....++..... .......+... +... ...+.
T Consensus 127 ~~~~~~~~~~---~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~ 195 (340)
T d1tbga_ 127 KTREGNVRVS---RELAGHTGYLSC----CRF-LDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGD-VMSL-SLAPD 195 (340)
T ss_dssp SSSCSCCCEE---EEECCCSSCEEE----EEE-EETTEEEEEETTTEEEEEETTTTE-EEEEEECCSSC-EEEE-EECTT
T ss_pred CCCCCCCCCC---EECCCCCCCCCC----CCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEE-EEEE-CCCCC
T ss_conf 2221222111---001354211011----111-111111111244543200123221-11112331015-7630-01244
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE--C
Q ss_conf 99999996798099998889970257415788788785999992299999999997899399998688973169990--5
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--A 1269 (1348)
Q Consensus 1192 g~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~--~ 1269 (1348)
+.++++|+.||.|++||+++++ ....+. +|...|++++|+|+ +.++++|+.||.|++||++.. .....+. .
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~-~~~~~~---~h~~~i~~v~~~p~--~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~ 268 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGM-CRQTFT---GHESDINAICFFPN--GNAFATGSDDATCRLFDLRAD-QELMTYSHDN 268 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTE-EEEEEC---CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred CCEEEEEECCCEEEEEECCCCC-EEEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEEEEEECCC-CCCCCCCCCC
T ss_conf 2126876057369999999994-889995---78898589999799--899999969996999752122-1111111224
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 899869999907999999996799099997-6992689994557864545667838999947997999998898099929
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1270 h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+...+++++|+|++.+|++|+.||.|++|| .+++.+..+.+ |. +.|++++|+|++.+|++|+.||.|+|||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~-------~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HD-------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CS-------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 457458999989999999997979899999999939899848-99-------9789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-33 Score=256.08 Aligned_cols=281 Identities=15% Similarity=0.155 Sum_probs=234.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98289999589999999978994999987999388896279999998379999860899899999689829998345777
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~ 1115 (1348)
+.+..++++|+++.|+.+. ++.|.+|+.++.+....+.+|. ..|++++| +|++++|++|+.||.|++|++..
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~---~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~-- 89 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQ-- 89 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSS--
T ss_pred CCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCC---CCEEEEEE--ECCCCEEECCCCCCEEEEEEEEC--
T ss_conf 8759999969989999996-9999999999996617974788---88899999--48999672255673674663101--
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC--CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 8505885010235789962125048999359996999987--98299998778960355315999998179997649999
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~--Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+..... ..+.+|...+.+ ++|++++..+++++. ++.+++|+.++++ ....+..|.+. |+++ .+++++.
T Consensus 90 ~~~~~~---~~~~~~~~~v~~----v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~-v~~v-~~~~~~~ 159 (311)
T d1nr0a1 90 TTHILK---TTIPVFSGPVKD----ISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARA-MNSV-DFKPSRP 159 (311)
T ss_dssp TTCCEE---EEEECSSSCEEE----EEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSC-EEEE-EECSSSS
T ss_pred CCCCCC---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-CCCCCCE
T ss_conf 111000---013433575433----233311100011112211111111111111-11111111111-1111-1121110
Q ss_pred -EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE----
Q ss_conf -999996798099998889970257415788788785999992299999999997899399998688973169990----
Q 000697 1194 -QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID---- 1268 (1348)
Q Consensus 1194 -~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~---- 1268 (1348)
.+++|+.||.|++||.++.+ ..... .+|...|.++.++|+ ++++++++.||.|++||.+.+ ..+..+.
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~-~~~~~---~~~~~~i~~v~~~p~--~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~ 232 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFK-FKSTF---GEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSL 232 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBE-EEEEE---CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC-CEEEECBCTTS
T ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCC---CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 120001122111111111111-11111---111111111234764--221211111111100012446-41122211111
Q ss_pred ---CCCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf ---5899869999907999999996799099997-699268999455786454566783899994799799999889809
Q 000697 1269 ---AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1269 ---~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
+|.+.|++++|+|++.+|++|+.||.|+||| .+++.+.++.. +.. ....+.++.| ++..|++++.||.|
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~----~~~~~~~~~~--~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTR----IEDQQLGIIW--TKQALVSISANGFI 305 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSS----GGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCC----CCCEEEEEEE--CCCEEEEEECCCEE
T ss_conf 1100246532102478899999993799699999999969999979-998----6332999995--19999999899979
Q ss_pred EECC
Q ss_conf 9929
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
++||
T Consensus 306 ~~wd 309 (311)
T d1nr0a1 306 NFVN 309 (311)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.9e-33 Score=252.21 Aligned_cols=291 Identities=14% Similarity=0.169 Sum_probs=228.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 982899995899999999789949999879993--888962799999983799998608998999996898299983457
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~--~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~ 1113 (1348)
.+|+|++|+|++.+|++|+.++.|+||+.++++ .+..+++|. ..|.+++| ++++++|++++.|+.|+||++..
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEEECC
T ss_conf 88389999899999999948898999988899789999955889---98889999--79999999997999399986203
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEE----EEECCCCCCCEEEEEEEC
Q ss_conf 7785058850102357899621250489993599969999879829999877896035----531599999817999764
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV----NPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i----~~l~~~~~~~VtsL~~~s 1189 (1348)
+..+.. ..+.+|...+.+ ++|++++..+++++.|+.|++|+..... .. .....+.. .|.++ .++
T Consensus 83 --~~~~~~---~~~~~~~~~v~~----i~~~p~~~~l~~~s~d~~i~i~~~~~~~-~~~~~~~~~~~~~~-~v~~v-~~~ 150 (371)
T d1k8kc_ 83 --RTWKPT---LVILRINRAARC----VRWAPNEKKFAVGSGSRVISICYFEQEN-DWWVCKHIKKPIRS-TVLSL-DWH 150 (371)
T ss_dssp --TEEEEE---EECCCCSSCEEE----EEECTTSSEEEEEETTSSEEEEEEETTT-TEEEEEEECTTCCS-CEEEE-EEC
T ss_pred --CCCCCC---CCCCCCCCCCCC----CCCCCCCCCCEEECCCCCCEEEEEECCC-CCCCCCCCCCCCCC-CCCCC-CCC
T ss_conf --321100---122322110001----1111112110000025763025442033-43311100101112-22111-111
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEE--------------EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 999999999679809999888997025--------------741578878878599999229999999999789939999
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLV--------------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~IrIwDlr~~~~~v--------------~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IW 1255 (1348)
+++.+|++|+.||.|++||........ .......+|...|.+++|+|+ ++.+++++.||.|++|
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~d~~i~iw 228 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN--GSRVAWVSHDSTVCLA 228 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS--SSEEEEEETTTEEEEE
T ss_pred CCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC--CCCCCCCCCCCCCEEE
T ss_conf 11111000134767999840157643100122111111110112440476674789875123--3210000147860588
Q ss_pred ECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE--CCCCEEEEEECC----------------------
Q ss_conf 86889731699905899869999907999999996799099997--699268999455----------------------
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYH---------------------- 1311 (1348)
Q Consensus 1256 Dlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd--~~g~~l~~i~~~---------------------- 1311 (1348)
|+..+ ..+..+..|..+|.+++|++++.++++|+ |+.+.+|. .....+. +...
T Consensus 229 d~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (371)
T d1k8kc_ 229 DADKK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLD 305 (371)
T ss_dssp EGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE-ECCCCCCC--------CHHHHHHHCC
T ss_pred EEECC-CCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEE-EEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf 64101-21000001466520365469997999981-99267877608986288-72020676542124622001685065
Q ss_pred -----------CCCCCCCCCCCEEEEEEECCC----CEEEEEECCCEEEECC
Q ss_conf -----------786454566783899994799----7999998898099929
Q 000697 1312 -----------HPSFMAQKIGSVNCLTFHPYQ----VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 -----------h~~f~~~~~~~Vtslafspdg----~~Latgs~Dg~I~IWd 1348 (1348)
.......|.+.|+++++++.+ ..++|++.||.|++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 2058712455661412555698899999489986567999991899399996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.4e-30 Score=231.28 Aligned_cols=286 Identities=13% Similarity=0.145 Sum_probs=213.8
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 136789982899995899999999789949999879993888962-7999999837999986089989999968982999
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~-~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrI 1108 (1348)
--..|...|++++|+|++++|++|+.||.|++||+++++.+..+. .|. ..|+++.| ++++. +++++.|+.+++
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~---~~v~~v~~--~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---TMITGIKT--TSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS---SCEEEEEE--CTTSC-EEEEETTTEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC---CCEEEEEE--ECCCE-EECCCCEEEEEE
T ss_conf 8488887828999979999999990899299999999968899837887---74899884--03311-210231026887
Q ss_pred EECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 83457778505885010235789962125048999359996999987982999987789603553159999981799976
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~ 1188 (1348)
|+......... . .....+...+.+ +.|++++..++ ++.++.+++|+..... . .... ..+.++ .+
T Consensus 81 ~~~~~~~~~~~-~---~~~~~~~~~~~~----~~~s~~g~~~~-~~~~~~i~~~~~~~~~---~-~~~~--~~~~~~-~~ 144 (299)
T d1nr0a2 81 VPAGGSGVDSS-K---AVANKLSSQPLG----LAVSADGDIAV-AACYKHIAIYSHGKLT---E-VPIS--YNSSCV-AL 144 (299)
T ss_dssp ECSSSSSSCTT-S---CCEEECSSCEEE----EEECTTSSCEE-EEESSEEEEEETTEEE---E-EECS--SCEEEE-EE
T ss_pred ECCCCCCCCCC-C---CCCCCCCCCCCC----CCCCCCCCCCC-CCCCCCCCCCCCCCCC---C-CCCC--CCCCCC-CC
T ss_conf 31677620111-0---001111344321----00112211111-2222222111111111---1-0111--123322-11
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC--CEEE
Q ss_conf 49999999996798099998889970257415788788785999992299999999997899399998688973--1699
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD--AYLT 1266 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~--~i~t 1266 (1348)
+++++++++|+.||.|++||+++........ ..|...|++++|+|+ +.++++++.||.|++||+.++.. ....
T Consensus 145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 219 (299)
T d1nr0a2 145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT---IVHPAEITSVAFSNN--GAFLVATDQSRKVIPYSVANNFELAHTNS 219 (299)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEE---EECSSCEEEEEECTT--SSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111111---111111111111111--11111111111111111111111111111
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 90589986999990799999999679909999769-92689994557864545667838999947997999998898099
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1345 (1348)
Q Consensus 1267 l~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~ 1345 (1348)
+..|...|++++|+|++.+|++|+.|+.|++||+. +.....+.. +. .+...+.++.|. ++.+|++++.|+.|+
T Consensus 220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~----~~~~~v~~~~~~-~~~~l~s~s~D~~i~ 293 (299)
T d1nr0a2 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GA----HAMSSVNSVIWL-NETTIVSAGQDSNIK 293 (299)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TS----STTSCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEE-CC----CCCCCEEEEEEC-CCCEEEEEECCCEEE
T ss_conf 111111111112466645138882899799998999973148983-48----988968999977-989999992899799
Q ss_pred ECC
Q ss_conf 929
Q 000697 1346 IHS 1348 (1348)
Q Consensus 1346 IWd 1348 (1348)
+||
T Consensus 294 iWd 296 (299)
T d1nr0a2 294 FWN 296 (299)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 994
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-29 Score=226.20 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=223.4
Q ss_pred CCEEEEEECCCCCEEEEEECCCC-EEEEECCCC--CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 98289999589999999978994-999987999--388896279999998379999860899899999689829998345
Q 000697 1036 KGTKTALLQPFSPIVVAADENER-IKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~-I~IWd~~t~--~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~ 1112 (1348)
..+++++|+|+++.|+.++.+.. |+.|+.... ..+..+.+|. ...|++++|.+..++.+|++|+.||+|+||++.
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCC--CCCEEEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 984799998997999999699879999768888765028990789--998899998117999799999489977985405
Q ss_pred CCCCCEEEEE-EEECCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 7778505885-01023578996212504899935999699998--79829999877896035531599999817999764
Q 000697 1113 DQKDKQKLVT-AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1113 ~~~~~~~lvs-~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg--~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s 1189 (1348)
.......... ....+..|...+.+ ++|++++..+++++ .++.+++|+..+++ ++..+.+|... |+++ .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~----v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~-v~~~-~~~ 168 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPISD----ISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQR-INAC-HLK 168 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEE----EEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSC-EEEE-EEC
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEE----EEECCCCCCCCEEECCCCCEEEEEEECCCC-CCEEEEECCCC-CCCC-CCC
T ss_conf 8862156510025411365673779----998999882201001244047888502331-10012001234-3211-112
Q ss_pred CCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 9999-999996798099998889970257415788788785999992299999999997899399998688973169990
Q 000697 1190 VHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1190 ~dg~-~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~ 1268 (1348)
+++. .+++++.||.+++||.+..+ .......+.+|...|.+++|+|+ .+.++++++.||.|++||++++ +.+.++.
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~v~~v~~~pd-~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~ 245 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSG-EFLKYIE 245 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTC-CEEEECC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCCCCCCEEEEECCC-CCEECCCCCCCCCEEEEEECCC-CCCCCCC
T ss_conf 3432068886211122111122110-00000001577775277630345-3100001123321013430012-2211111
Q ss_pred CCCCCEEEEEEE---CCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEE--EEEEECCCCEEEEEECCC
Q ss_conf 589986999990---79999999967990999976-992689994557864545667838--999947997999998898
Q 000697 1269 AHRGSLSALAVH---RHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN--CLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1269 ~h~~~ItsLafs---pdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vt--slafspdg~~Latgs~Dg 1342 (1348)
+|...+.++.|+ +++.+|++++.|+.|+|||+ +++.+..+.. |.. ...+. ++.+.++ .+|++++.||
T Consensus 246 ~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-~~l~s~s~dg 318 (325)
T d1pgua1 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL-DKQ-----QLGNQQVGVVATGN-GRIISLSLDG 318 (325)
T ss_dssp BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTT-----CGGGCEEEEEEEET-TEEEEEETTS
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE-CCC-----CCCCEEEEEEECCC-CEEEEEECCC
T ss_conf 1111111100000036899999995899399999999978899995-487-----40676999998899-9999997999
Q ss_pred EEEECC
Q ss_conf 099929
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.|++|+
T Consensus 319 ~i~vwd 324 (325)
T d1pgua1 319 TLNFYE 324 (325)
T ss_dssp CEEEEE
T ss_pred EEEEEE
T ss_conf 999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-28 Score=221.66 Aligned_cols=240 Identities=17% Similarity=0.284 Sum_probs=206.4
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 678998289999589999999978994999987999--388896279999998379999860899899999689829998
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~--~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIW 1109 (1348)
..|...|.+++|+|++++|++|+.||.|++||+... +....+..|. ..+.++.| ++++.++++++.|+.|++|
T Consensus 94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~l~s~~~d~~i~~~ 168 (337)
T d1gxra_ 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA---PACYALAI--SPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS---SCEEEEEE--CTTSSEEEEEETTSCEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 488996899998679988988612332111111111111111111111---11111111--1111111111111111111
Q ss_pred ECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 34577785058850102357899621250489993599969999879829999877896035531599999817999764
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s 1189 (1348)
+..+ ++.. ....+|...+.+ ++|++++..+++++.|+.|++||+++++ .+..+. +.. .|.++ .+.
T Consensus 169 ~~~~--~~~~-----~~~~~~~~~v~~----l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~-~~~-~i~~l-~~~ 233 (337)
T d1gxra_ 169 DLHN--QTLV-----RQFQGHTDGASC----IDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHD-FTS-QIFSL-GYC 233 (337)
T ss_dssp ETTT--TEEE-----EEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-CSS-CEEEE-EEC
T ss_pred CCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCCC-CCC-CEEEE-EEC
T ss_conf 1111--1111-----111111111110----1234443211223566553211111100-000246-666-15799-971
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99999999967980999988899702574157887887859999922999999999978993999986889731699905
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~ 1269 (1348)
++++.+++|+.||.+++||++..+. ... ..|...|++++|+|+ +++|++|+.||.|++||..++ +.+..+.
T Consensus 234 ~~~~~l~~~~~d~~i~i~d~~~~~~-~~~----~~~~~~i~~v~~s~~--g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~- 304 (337)
T d1gxra_ 234 PTGEWLAVGMESSNVEVLHVNKPDK-YQL----HLHESCVLSLKFAYC--GKWFVSTGKDNLLNAWRTPYG-ASIFQSK- 304 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTSSCE-EEE----CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTC-CEEEEEE-
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCC-CCC----CCCCCCCCEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEECC-
T ss_conf 5303000000256421111111110-000----124565416999899--999999948996999989999-7999926-
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 8998699999079999999967990999976
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1270 h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~ 1300 (1348)
|...|++++|+|++++|++|+.||.|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9998799999279999999908996999977
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.5e-29 Score=224.44 Aligned_cols=247 Identities=14% Similarity=0.199 Sum_probs=203.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC--CCEEE
Q ss_conf 67899828999958999999997899499998799938--889627999999837999986089989999968--98299
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIR 1107 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~--i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~--DG~Ir 1107 (1348)
..|...|++++|+|++++|++|+.||.|+|||+.+++. ...+..|. ..|.+++| ++++.++++++. +..++
T Consensus 55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~--s~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKDISW--DSESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS---SCEEEEEE--CTTSCEEEEEECCSSCSEE
T ss_pred CCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 478888899999489996722556736746631011110000134335---75433233--3111000111122111111
Q ss_pred EEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 983457778505885010235789962125048999359996-9999879829999877896035531599999817999
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~ 1186 (1348)
||++.. ++.. ..+.+|...+.+ ++|++++.. +++++.|+.|++||.++.+ ....+..|... |+++
T Consensus 130 v~~~~~--~~~~-----~~l~~h~~~v~~----v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~-i~~v- 195 (311)
T d1nr0a1 130 VFLFDT--GTSN-----GNLTGQARAMNS----VDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKF-VHSV- 195 (311)
T ss_dssp EEETTT--CCBC-----BCCCCCSSCEEE----EEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSC-EEEE-
T ss_pred CCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-
T ss_conf 111111--1111-----111111111111----11121110120001122111111111111-11111111111-1112-
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC----CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 76499999999967980999988899702574157----88788785999992299999999997899399998688973
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP----HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~----~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~ 1262 (1348)
.++++++++++|+.||.|++||.+.+. ....+.. ..+|...|++++|+|+ +++|++|+.||.|++||++++ +
T Consensus 196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~tgs~Dg~v~iwd~~t~-~ 271 (311)
T d1nr0a1 196 RYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPD--GTKIASASADKTIKIWNVATL-K 271 (311)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT-E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCEEEEEECCCC-C
T ss_conf 347642212111111111000124464-112221111111002465321024788--999999937996999999999-6
Q ss_pred CEEEEECCCC-CEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 1699905899-86999990799999999679909999769
Q 000697 1263 AYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1263 ~i~tl~~h~~-~ItsLafspdg~~LasgS~Dg~I~Iwd~~ 1301 (1348)
++.++..+.. ....+.+.+++..+++++.||.|++||.+
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 9999979998633299999519999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.1e-29 Score=223.63 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=95.9
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE--EEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 89982899995899999999789949999879993888--9627999999837999986089989999968982999834
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~--~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
|...|.+++|+|++++|++|+.|+.|+|||+.++.... .+..|. ..|+++.| ++++..+++++.|+.|++|+.
T Consensus 50 H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~---~~v~~i~~--~p~~~~l~~~s~d~~i~i~~~ 124 (371)
T d1k8kc_ 50 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN---RAARCVRW--APNEKKFAVGSGSRVISICYF 124 (371)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS---SCEEEEEE--CTTSSEEEEEETTSSEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCEEECCCCCCEEEEE
T ss_conf 8998889999799999999979993999862033211001223221---10001111--111211000002576302544
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCC-----------------EEEEEE
Q ss_conf 577785058850102357899621250489993599969999879829999877896-----------------035531
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----------------QMVNPI 1174 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~-----------------~~i~~l 1174 (1348)
.......... .....|...+.+ ++|+|++..+++++.|+.|++||..... ..+...
T Consensus 125 ~~~~~~~~~~---~~~~~~~~~v~~----v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (371)
T d1k8kc_ 125 EQENDWWVCK---HIKKPIRSTVLS----LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197 (371)
T ss_dssp ETTTTEEEEE---EECTTCCSCEEE----EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ECCCCCCCCC---CCCCCCCCCCCC----CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 2033433111---001011122211----111111111000134767999840157643100122111111110112440
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 59999981799976499999999967980999988899702574157887887859999922999999999978993999
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~I 1254 (1348)
..|... |.++ .++++++.+++++.||.|++||.+.+. .+..+. .|..+|.+++|+++ +.++++| .|+.+++
T Consensus 198 ~~~~~~-v~~~-~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~s~~fs~d--~~~la~g-~d~~~~~ 268 (371)
T d1k8kc_ 198 SSSCGW-VHGV-CFSANGSRVAWVSHDSTVCLADADKKM-AVATLA---SETLPLLAVTFITE--SSLVAAG-HDCFPVL 268 (371)
T ss_dssp CCCSSC-EEEE-EECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEE---CSSCCEEEEEEEET--TEEEEEE-TTSSCEE
T ss_pred CCCCCC-EEEE-EEECCCCCCCCCCCCCCCEEEEEECCC-CEEEEE---CCCCCCEEEEECCC--CCEEEEE-CCCCEEE
T ss_conf 476674-7898-751233210000147860588641012-100000---14665203654699--9799998-1992678
Q ss_pred EE
Q ss_conf 98
Q 000697 1255 LD 1256 (1348)
Q Consensus 1255 WD 1256 (1348)
|+
T Consensus 269 ~~ 270 (371)
T d1k8kc_ 269 FT 270 (371)
T ss_dssp EE
T ss_pred EE
T ss_conf 77
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.3e-27 Score=212.61 Aligned_cols=290 Identities=16% Similarity=0.269 Sum_probs=215.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..|...|.+ +++++|++|++|+.||.|+|||+.+++.+.++.+|. ..|.++.| ++ .+|++++.|+.+++|+.
T Consensus 13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~--~~--~~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQM--RD--NIIISGSTDRTLKVWNA 84 (342)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---SCEEEEEE--ET--TEEEEEETTSCEEEEET
T ss_pred CCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CC--CCCCCCEECCCCCCCCC
T ss_conf 886875099-999789999999189909999899997999994889---99899994--79--86321000001111111
Q ss_pred CCCCCCEEEE------EEE----------------ECCCCCCCCC-----CCCCEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 5777850588------501----------------0235789962-----125048999359996999987982999987
Q 000697 1112 YDQKDKQKLV------TAF----------------SSIQGHKPGV-----RCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1164 (1348)
Q Consensus 1112 ~~~~~~~~lv------s~~----------------~~l~~h~~~V-----~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl 1164 (1348)
.......... ... .......... ........+......++.++.++.|++||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~ 164 (342)
T d2ovrb2 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164 (342)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred CCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 10000000123330476520246522123444037874035563001110011110000013330243358986999525
Q ss_pred CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEE
Q ss_conf 78960355315999998179997649999999996798099998889970257415788788785999992299999999
Q 000697 1165 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1244 (1348)
Q Consensus 1165 ~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~Lv 1244 (1348)
.... ++..+..|... +... ..++..+++|+.||.|++||++..+ .+..+. +|...+.++.++ +++++
T Consensus 165 ~~~~-~~~~~~~~~~~-~~~~---~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~ 231 (342)
T d2ovrb2 165 ETET-CLHTLQGHTNR-VYSL---QFDGIHVVSGSLDTSIRVWDVETGN-CIHTLT---GHQSLTSGMELK----DNILV 231 (342)
T ss_dssp GGTE-EEEEECCCSSC-EEEE---EECSSEEEEEETTSCEEEEETTTCC-EEEEEC---CCCSCEEEEEEE----TTEEE
T ss_pred CCCE-EEEEECCCCCC-CCCC---CCCCCEEEEEECCCEEEEEECCCCE-EEEEEC---CCCCCEEEEECC----CCEEE
T ss_conf 2343-66787275444-2100---6899999999589939995255653-656741---665320577068----99999
Q ss_pred EEECCCCEEEEECCCCCCCEEEEEC---CCCCEEEEEEECCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 9978993999986889731699905---8998699999079999999967990999976-99268999455786454566
Q 000697 1245 SASQAGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1245 Sgs~DG~I~IWDlr~~~~~i~tl~~---h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~ 1320 (1348)
+|+.||.|++||.... +....+.. |...+.++.++ +.++++|+.||.|++||+ +++.+..+.. .. ...+.
T Consensus 232 s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~-~~--~~~~~ 305 (342)
T d2ovrb2 232 SGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT-LE--SGGSG 305 (342)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE-CT--TGGGT
T ss_pred EECCCCEEEEEECCCC-CCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEEC-CC--CCCCC
T ss_conf 9748988999865544-2211122100011010000137--98449990899899999999979899862-34--78988
Q ss_pred CCEEEEEEECCCCEEEEEECCCE----EEECC
Q ss_conf 78389999479979999988980----99929
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADAC----VSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~----I~IWd 1348 (1348)
+.|++++|+|++.++++|+.||+ |.+||
T Consensus 306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 97899998799989999968999704899993
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.4e-28 Score=217.17 Aligned_cols=279 Identities=15% Similarity=0.226 Sum_probs=184.3
Q ss_pred CCCCC-EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 78998-28999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1033 RFEKG-TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~-I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
.|... ++|+.| ++++|++|+.||+|+|||..+++.+.++.+|. ..|++++| ++ +++|++|+.||.|++|+.
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~--s~-~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD---GGVWALKY--AH-GGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS---SCEEEEEE--ET-TTEEEEEETTCCEEEEET
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CC-CCEEEEEECCCCCCCCCC
T ss_conf 837886999998--89999999189909999899993999997899---98899998--69-999999964524432111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCC-------------------------------------------------------
Q ss_conf 5777850588501023578996212-------------------------------------------------------
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRC------------------------------------------------------- 1136 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s------------------------------------------------------- 1136 (1348)
... ..... .....+......
T Consensus 82 ~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d1nexb2 82 KKG--CCTHV---FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156 (355)
T ss_dssp TTT--EEEEE---ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred CCC--CCCCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEE
T ss_conf 111--11111---1001111111111111232204554388868999856773001246520001000001123401210
Q ss_pred ----CCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf ----5048999359996999987982999987789603553159999981799976499999999967980999988899
Q 000697 1137 ----SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1137 ----~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~ 1212 (1348)
......+.+++..++.++.|+.|++||+.+++ .+.....+... +.++ .+++++..+++++.||.|++||.+++
T Consensus 157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDR-IYST-IYDHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-EEETTTTEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC-CEEEEECCCCC-CCCC-CCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf 110022210000256334421144204443013110-00110001233-2111-11121002101245636876301221
Q ss_pred CEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEE-EEECCCCEEEEEEC
Q ss_conf 70257415788788785999992299999999997899399998688973169990589986999-99079999999967
Q 000697 1213 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL-AVHRHAPIIASGSA 1291 (1348)
Q Consensus 1213 ~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsL-afspdg~~LasgS~ 1291 (1348)
. ....++ +|...|.++.++ ++++++|+.||.|++||+++. .. .+..|...+.++ .+++++.++++|+
T Consensus 234 ~-~~~~~~---~h~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~g~- 301 (355)
T d1nexb2 234 E-LMYTLQ---GHTALVGLLRLS----DKFLVSAAADGSIRGWDANDY-SR--KFSYHHTNLSAITTFYVSDNILVSGS- 301 (355)
T ss_dssp C-EEEEEC---CCSSCCCEEEEC----SSEEEEECTTSEEEEEETTTC-CE--EEEEECTTCCCCCEEEECSSEEEEEE-
T ss_pred C-CCCCCC---CCCCCCCCCCCC----CCEEEEEECCCCCCCCCCCCC-CE--ECCCCCCCCEEEEEECCCCCEEEEEE-
T ss_conf 1-111111---111111111232----100333201111111111111-10--00124688229999849998999980-
Q ss_pred CCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 990999976-99268999455786454566783899994799799999889809992
Q 000697 1292 KQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1292 Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
|+.|++||+ +++.+..... .|.+.|++++|+++ .++++++.||.+.||
T Consensus 302 d~~i~vwd~~tg~~~~~~~~-------~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 302 ENQFNIYNLRSGKLVHANIL-------KDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TTEEEEEETTTCCBCCSCTT-------TTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEEC-------CCCCCEEEEEECCC-EEEEEEECCCCEEEE
T ss_conf 99799999999979888845-------89998999998399-199999898909999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-27 Score=213.06 Aligned_cols=247 Identities=19% Similarity=0.300 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..+...|++++|+|++++|++|+.||.|++|+...++.+..+.+|. ..|.++.| ++++..+++++.+|.+++|+.
T Consensus 118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~---~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE---QDIYSLDY--FPSGDKLVSGSGDRTVRIWDL 192 (388)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEET
T ss_pred CCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCEEEEEEEC
T ss_conf 6778988999988999801213444111121111111111111111---11111011--111111112221015654101
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECCCCCEEEEEEC-------CCCCCCEE
Q ss_conf 577785058850102357899621250489993-5999699998798299998778960355315-------99999817
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-------SSSDCSIS 1183 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws-~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~-------~~~~~~Vt 1183 (1348)
.. ...... ...+.. ... +.+. .++..+++++.||.|++||..++. ....+. .|. ..|+
T Consensus 193 ~~--~~~~~~-----~~~~~~-~~~----~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~-~~v~ 258 (388)
T d1erja_ 193 RT--GQCSLT-----LSIEDG-VTT----VAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHK-DSVY 258 (388)
T ss_dssp TT--TEEEEE-----EECSSC-EEE----EEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCS-SCEE
T ss_pred CC--CCCCCC-----CCCCCC-CCC----CCCCCCCCCEEEEECCCCEEEEEECCCCC-CCEEECCCCCCCCCCC-CCEE
T ss_conf 11--111000-----012454-421----12368878758997389819996345573-0001024433345778-9878
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--------ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 99976499999999967980999988899702574--------1578878878599999229999999999789939999
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS--------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~--------~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IW 1255 (1348)
++ .+++++.++++|+.||.|++||++........ ......|...|.+++|+|+ +.+|++|+.||.|++|
T Consensus 259 ~l-~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~vw 335 (388)
T d1erja_ 259 SV-VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYILSGSKDRGVLFW 335 (388)
T ss_dssp EE-EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG--GCEEEEEETTSEEEEE
T ss_pred EE-EECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC--CCEEEEEECCCEEEEE
T ss_conf 99-99799999999978992898751577643210134442001101245532789998899--9999999698979999
Q ss_pred ECCCCCCCEEEEECCCCCEEEEEE------ECCCCEEEEEECCCCEEEEECC
Q ss_conf 868897316999058998699999------0799999999679909999769
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAV------HRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1256 Dlr~~~~~i~tl~~h~~~ItsLaf------spdg~~LasgS~Dg~I~Iwd~~ 1301 (1348)
|++++ +++.++.+|.+.|+++++ +|++.+|++|+.||.|+||+++
T Consensus 336 d~~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 336 DKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ECCCC-CEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 99999-6999996889978999984674258999999999189979997621
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-26 Score=206.18 Aligned_cols=270 Identities=17% Similarity=0.279 Sum_probs=211.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..+..+|+|+.| ++++|++|+.||+|+|||.++++.+.++.+|. ..|+++.| ++++|++|+.||.|++|+.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~----~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT---GSVLCLQY----DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS---SCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEC----CCCEEECCCCCCCCCCCCC
T ss_conf 899998899987--69999999289939999999991999992677---87763423----6300210011101100000
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCCCCEEEEEEEC
Q ss_conf 5777850588501023578996212504899935999699998798299998778960--35531599999817999764
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~--~i~~l~~~~~~~VtsL~~~s 1189 (1348)
.. +..... ...... .. ..+......++++..++.+++||...... ....+..+.. .+..+ .+
T Consensus 83 ~~--~~~~~~-----~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~- 146 (293)
T d1p22a2 83 NT--GEMLNT-----LIHHCE--AV----LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVV-DF- 146 (293)
T ss_dssp SS--CCEEEE-----ECCCCS--CE----EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEE-EE-
T ss_pred CC--CCCCCC-----CCCCCC--CC----CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCC-EE-
T ss_conf 24--641001-----111110--00----01111110000013566306861344544421210001135-43110-00-
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99999999967980999988899702574157887887859999922999999999978993999986889731699905
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~ 1269 (1348)
....+++++.|+.|++||.++.+ .+..+. ++...+..+.++ +..+++++.||.|++||++.. ..+..+..
T Consensus 147 -~~~~~~~~s~d~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 216 (293)
T d1p22a2 147 -DDKYIVSASGDRTIKVWNTSTCE-FVRTLN---GHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEG 216 (293)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCC-EEEEEE---CCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred -CCCCCCCCCCCCCEEEECCCCCC-EEEEEC---CCCCCCCCCCCC----CCEEEEECCCCEEEEEECCCC-EEEEEECC
T ss_conf -00220110699860410078883-889971---554453221689----875887658998999866556-14665214
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECC----------CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 89986999990799999999679909999769----------92689994557864545667838999947997999998
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1270 h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~----------g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
+...+.. +.+++.++++|+.||.|++||+. ...+..+.. |. +.|++++|+ +.+|++++
T Consensus 217 ~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-H~-------~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HS-------GRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CS-------SCCCCEEEC--SSCEEECC
T ss_pred CCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECC-CC-------CCEEEEEEC--CCEEEEEE
T ss_conf 3100000--145410799986799799998888864445677545578458-89-------988999971--99999992
Q ss_pred CCCEEEECC
Q ss_conf 898099929
Q 000697 1340 ADACVSIHS 1348 (1348)
Q Consensus 1340 ~Dg~I~IWd 1348 (1348)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred CCCEEEEEC
T ss_conf 299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.1e-25 Score=195.34 Aligned_cols=301 Identities=13% Similarity=0.235 Sum_probs=210.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC------EEEEEECCCCCCCCEEEEEEEE--E---CCCCEEEEE
Q ss_conf 6789982899995899999999789949999879993------8889627999999837999986--0---899899999
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVN--E---LDVSLLLVA 1100 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~------~i~~l~~h~~~~~~ItsI~f~n--s---~d~~~Lvtg 1100 (1348)
..|...|.++++++ +++++++.|+.|+|||..+.. .......+. ..+..+.... . .+..+++++
T Consensus 11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECC---CCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 76367127999969--999999799969987898788776540467654204---7716766675001579987689999
Q ss_pred ECCCEEEEEECCCCCCCEEEEEE-EECCC--CCCCCCCCCCEEEEEECC-----CCEEEEEECCCEEEEEECCCCCE---
Q ss_conf 68982999834577785058850-10235--789962125048999359-----99699998798299998778960---
Q 000697 1101 SCNGNIRIWKDYDQKDKQKLVTA-FSSIQ--GHKPGVRCSNVVVDWQQQ-----SGYLYASGEVSSIMLWDLEKEQQ--- 1169 (1348)
Q Consensus 1101 s~DG~IrIWdl~~~~~~~~lvs~-~~~l~--~h~~~V~s~~~~v~ws~~-----~~~Llsgg~Dg~I~IWDl~t~~~--- 1169 (1348)
+.||.|++|+............. ...+. .+...+.. +.|.++ ...+++++.||.+++||+.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE----EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEE----EEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCC
T ss_conf 489919999822898205651245632431157896689----9984478865421799983898199987404775341
Q ss_pred -----------EEEEE--CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCCCCCCEEEEE
Q ss_conf -----------35531--5999998179997649999999996798099998889970257415---7887887859999
Q 000697 1170 -----------MVNPI--PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR---PHTQQVERVVGIS 1233 (1348)
Q Consensus 1170 -----------~i~~l--~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~---~~~~h~~~I~si~ 1233 (1348)
..... .......++++ .+++++ ++++|+.||.|++||+++++. ...++ ...+|..+|.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSV-DISERG-LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEE-EECTTS-EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEE
T ss_pred EEEEEECCCEECCCCEECCCCCCCCEEEE-EECCCC-EEEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCEEEECC
T ss_conf 02331032000145100025789867899-978999-899993898299986023321-100001111124256387700
Q ss_pred EECCCCCCEEEEEECCCC---EEEEECCCCCCCEEEEE-------------CCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 922999999999978993---99998688973169990-------------58998699999079999999967990999
Q 000697 1234 FQPGLDPAKIVSASQAGD---IQFLDIRNHKDAYLTID-------------AHRGSLSALAVHRHAPIIASGSAKQLIKV 1297 (1348)
Q Consensus 1234 ~sp~~~g~~LvSgs~DG~---I~IWDlr~~~~~i~tl~-------------~h~~~ItsLafspdg~~LasgS~Dg~I~I 1297 (1348)
|+|+ +++|++|+.|+. |++||+..+ +.+.++. +|.+.|++++|+|++++|++|+.|+.|++
T Consensus 239 ~spd--g~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v 315 (393)
T d1sq9a_ 239 FSPQ--GSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315 (393)
T ss_dssp ECSS--TTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCCC--CCEEEEECCCCCCCEEEECCCCCC-EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 4665--320112428988421001035321-3444311566664310232023586660013898880698779998999
Q ss_pred EE-CCCCEEEEEECCCCCCCC--------------CCCCCEEEEEEECCC----------CEEEEEECCCEEEECC
Q ss_conf 97-699268999455786454--------------566783899994799----------7999998898099929
Q 000697 1298 FS-LEGEQLGTIRYHHPSFMA--------------QKIGSVNCLTFHPYQ----------VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1298 wd-~~g~~l~~i~~~h~~f~~--------------~~~~~Vtslafspdg----------~~Latgs~Dg~I~IWd 1348 (1348)
|| .+++.+.++++ |..... -..+.+.++.|.+.+ ..+++++.|+.|++|.
T Consensus 316 Wd~~~g~~~~~l~g-H~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 316 WDVKTKERITTLNM-HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EETTTTEEEEEEEC-CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EECCCCCEEEEECC-CCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 99999979999988-6876137734899999999999831246998866766312368899799999199089990
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.3e-26 Score=203.25 Aligned_cols=240 Identities=18% Similarity=0.351 Sum_probs=208.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89982899995899999999789949999879993888962799999983799998608998999996898299983457
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~ 1113 (1348)
|...|.+++|++++.+++++..++.+.+|+....+....+..|. ..+.++.| ++++..+++++.|+.+++|++.+
T Consensus 58 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~ 132 (317)
T d1vyhc1 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD---HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQT 132 (317)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS---SCEEEEEE--CSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEC--CCCCCEEEEECCCCCEEEEECCC
T ss_conf 88867777630111101111111110111001111111100000---00000001--69985577652675235751144
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC---
Q ss_conf 77850588501023578996212504899935999699998798299998778960355315999998179997649---
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--- 1190 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~--- 1190 (1348)
+... ..+.+|...+.+ +.|++++..+++++.|+.|++|+...+. ....+..+... +.++ .+.+
T Consensus 133 --~~~~-----~~~~~~~~~~~~----~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~ 198 (317)
T d1vyhc1 133 --GYCV-----KTFTGHREWVRM----VRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHV-VECI-SWAPESS 198 (317)
T ss_dssp --CCEE-----EEEECCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECCSCG
T ss_pred --CEEE-----EEECCCCCCCEE----EECCCCCCEEEEEECCCEEEEEEECCCE-EEEEEECCCCC-CEEE-EEEECCC
T ss_conf --3034-----687167776300----0016679999999279829997512540-34788247787-3379-9863256
Q ss_pred -----------------CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf -----------------999999996798099998889970257415788788785999992299999999997899399
Q 000697 1191 -----------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1191 -----------------dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~ 1253 (1348)
.+..+++|+.||.|++||.++++ .+..+. +|...|.+++++|+ +++|++|+.||.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~---~~~~~v~~~~~~~~--~~~l~s~~~dg~i~ 272 (317)
T d1vyhc1 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLV---GHDNWVRGVLFHSG--GKFILSCADDKTLR 272 (317)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEE---CCSSCEEEEEECSS--SSCEEEEETTTEEE
T ss_pred CCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEE
T ss_conf 4111034563034302588614751699789998889996-889996---88998799998799--99999997989499
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 9986889731699905899869999907999999996799099997
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1254 IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd 1299 (1348)
+||++++ +++.++.+|.+.|++++|+|++++|++|+.||.|+|||
T Consensus 273 iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 273 VWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999999-19999928999889999949999999992899499829
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.7e-26 Score=206.13 Aligned_cols=292 Identities=7% Similarity=0.081 Sum_probs=206.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 3678998289999589999999978994999987999388---8962799999983799998608998999996898299
Q 000697 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL---NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1031 d~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i---~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~Ir 1107 (1348)
...|...|++++|+|++++|++|+.||+|+|||++++... .....|. ..|.+++|.+ .++.++++|+.||.|+
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---~~V~~v~f~~-~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---HPLLCCNFID-NTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---SCEEEEEEEE-SSSEEEEEEETTSCEE
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCC---CCEEEEEEEC-CCCCEEEECCCCCCEE
T ss_conf 88998978889995899999999799929999756998636898855899---9889999958-9997899812653114
Q ss_pred EEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE---EEEEECCCCC-CCEE
Q ss_conf 98345777850588501023578996212504899935999699998798299998778960---3553159999-9817
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ---MVNPIPSSSD-CSIS 1183 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~---~i~~l~~~~~-~~Vt 1183 (1348)
+|+... ...... ...+...... ...+.++...+++++.++.+++||++.... .......+.. ....
T Consensus 83 ~w~~~~--~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d1yfqa_ 83 KVDLIG--SPSFQA-----LTNNEANLGI---CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp EECSSS--SSSEEE-----CBSCCCCSCE---EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred EEECCC--CCCCCC-----CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEE
T ss_conf 542044--320000-----0111111111---111111111111101222111020234443302300024300120000
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC-
Q ss_conf 9997649999999996798099998889970257415788788785999992299999999997899399998688973-
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD- 1262 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~- 1262 (1348)
.. .....+..+++++.||.|++||++......... ....+...+.+..+.+. .+..+++++.||.+.+|+......
T Consensus 153 ~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~v~~~~~~~~~ 229 (342)
T d1yfqa_ 153 IF-TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPK-EQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EE-EEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSG-GGCEEEEEETTSEEEEEECCTTCCS
T ss_pred EE-EEECCCCCEEEECCCCCEEEEECCCCCCCCEEE-EECCCCCCEEEEEEECC-CCCEEEEECCCCEEEEEEECCCCCE
T ss_conf 01-000168702465179847887605676341112-10254221014676369-9987886548995999980598640
Q ss_pred ----CEEEE---------ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf ----16999---------058998699999079999999967990999976-9926899945578645456678389999
Q 000697 1263 ----AYLTI---------DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTF 1328 (1348)
Q Consensus 1263 ----~i~tl---------~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslaf 1328 (1348)
....+ ..|...+++++|+|++.+|++|+.||.|++||. +++.+..+.. + ..+..++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~-~--------~~~~~~~~ 300 (342)
T d1yfqa_ 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-F--------NEDSVVKI 300 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-C--------SSSEEEEE
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-C--------CCCEEEEE
T ss_conf 11123512565553147776235431599669844799987999899999998949887058-9--------99879999
Q ss_pred ECCCCEEEEEECCCEEEECC
Q ss_conf 47997999998898099929
Q 000697 1329 HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1329 spdg~~Latgs~Dg~I~IWd 1348 (1348)
++++.+|++++.|+.+++|.
T Consensus 301 s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 301 ACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EECSSEEEEEEECTHHHHCS
T ss_pred EECCCEEEEEECCCCEEEEE
T ss_conf 94799999999199278830
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=5.5e-25 Score=195.10 Aligned_cols=241 Identities=17% Similarity=0.261 Sum_probs=195.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC----CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 8998289999589999999978994999987999----388896279999998379999860899899999689829998
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~----~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIW 1109 (1348)
|...|.+++|+|++.++++|+.|+.+.+|+.... .....+.+|. ........ ..+..+.....++....|
T Consensus 96 ~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~ 169 (340)
T d1tbga_ 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT---GYLSCCRF---LDDNQIVTSSGDTTCALW 169 (340)
T ss_dssp SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS---SCEEEEEE---EETTEEEEEETTTEEEEE
T ss_pred CCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCC---CCCCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf 653377567601211443101332010133222212221110013542---11011111---111111111244543200
Q ss_pred ECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 34577785058850102357899621250489993599969999879829999877896035531599999817999764
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s 1189 (1348)
.... ..... ....+...+.. ..+.+....+++++.|+.|++||++++. ++..+..|... |+++ .++
T Consensus 170 ~~~~--~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~-i~~v-~~~ 235 (340)
T d1tbga_ 170 DIET--GQQTT-----TFTGHTGDVMS----LSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESD-INAI-CFF 235 (340)
T ss_dssp ETTT--TEEEE-----EEECCSSCEEE----EEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSC-EEEE-EEC
T ss_pred CCCC--CCCCC-----CCCCCCEEEEE----ECCCCCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCC-EEEE-EEC
T ss_conf 1232--21111-----12331015763----0012442126876057369999999994-88999578898-5899-997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99999999967980999988899702574157887887859999922999999999978993999986889731699905
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~ 1269 (1348)
++++++++|+.||.|++||++... ....+ ....+...|.+++|+|+ +.+|++|+.||.|++||+.++ +.+.++.+
T Consensus 236 p~~~~l~s~s~d~~i~~~~~~~~~-~~~~~-~~~~~~~~i~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~ 310 (340)
T d1tbga_ 236 PNGNAFATGSDDATCRLFDLRADQ-ELMTY-SHDNIICGITSVSFSKS--GRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTE-EEEEE-CCTTCCSCEEEEEECSS--SCEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred CCCCEEEEEECCCEEEEEEECCCC-CCCCC-CCCCCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEEECC
T ss_conf 998999999699969997521221-11111-12244574589999899--999999979798999999999-39899848
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 899869999907999999996799099997
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1270 h~~~ItsLafspdg~~LasgS~Dg~I~Iwd 1299 (1348)
|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 999789999908999999990699799859
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.2e-25 Score=200.06 Aligned_cols=263 Identities=15% Similarity=0.247 Sum_probs=201.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899828999958999999997899499998799938889627999999837999986089989999968982999834
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl 1111 (1348)
..|..+|++++|+| |++|+.||+|++||..++ ...|. ..|.++.+ + .+..+++++.|+++++|+.
T Consensus 10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~---~~V~~~~~--~-~~~~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHS---NLIVSLDN--S-KAQEYSSISWDDTLKVNGI 74 (287)
T ss_dssp CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCC---SCEEEEEC--C-STTCCEEEETTTEEEETTE
T ss_pred CCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCC---CCEEEEEE--C-CCCEEEEEEECCCCCCCCC
T ss_conf 88798649999895----789848991999989998-----88877---87899996--5-9972898861012221111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57778505885010235789962125048999359996999987982999987789603553159999981799976499
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~d 1191 (1348)
... + + ...+.. +.+.+ ++.+++.+.++.+.+|+...+. .+..+..+. .+.++ .++
T Consensus 75 ~~~----~-------~---~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~---~~~ 129 (287)
T d1pgua2 75 TKH----E-------F---GSQPKV----ASANN-DGFTAVLTNDDDLLILQSFTGD-IIKSVRLNS--PGSAV---SLS 129 (287)
T ss_dssp EEE----E-------C---SSCEEE----EEECS-SSEEEEEETTSEEEEEETTTCC-EEEEEECSS--CEEEE---EEC
T ss_pred CCC----C-------C---CCCEEE----EEECC-CCCEEEEEECCCCEEEECCCEE-EEEECCCCC--EEEEE---ECC
T ss_conf 111----1-------1---221014----66416-7856999603321000011003-543101222--03565---214
Q ss_pred CCEEEEEECCC-EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECC
Q ss_conf 99999996798-09999888997025741578878878599999229999999999789939999868897316999058
Q 000697 1192 GGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG-~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h 1270 (1348)
+..+++++.++ .+++|++........ ....|...+++++|+|+ +.+|++|+.||.|++||+.++......+..|
T Consensus 130 ~~~~~v~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h 204 (287)
T d1pgua2 130 QNYVAVGLEEGNTIQVFKLSDLEVSFD---LKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDLQSREVKTSRWAFR 204 (287)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEE---CSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEE---EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 751110002210002100012210001---21024785369995167--6521101111110000002332110001111
Q ss_pred CCCEEEEEEECC----------CCEEEEEECCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 998699999079----------9999999679909999769--9268999455786454566783899994799799999
Q 000697 1271 RGSLSALAVHRH----------APIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1338 (1348)
Q Consensus 1271 ~~~ItsLafspd----------g~~LasgS~Dg~I~Iwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg 1338 (1348)
...|.+++|+|. +.++++|+.|+.|++|++. ++.+..+.+ |. +.|++++|++++ .|+++
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~-h~-------~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-HK-------DGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-ST-------TCEEEEEEEETT-EEEEE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC-CC-------CCEEEEEECCCC-EEEEE
T ss_conf 1111000001365410012678870276649995999888999758999278-78-------985899998999-89999
Q ss_pred ECCCEEEECC
Q ss_conf 8898099929
Q 000697 1339 SADACVSIHS 1348 (1348)
Q Consensus 1339 s~Dg~I~IWd 1348 (1348)
+.|+.|++|+
T Consensus 276 g~D~~v~iW~ 285 (287)
T d1pgua2 276 GADACIKRWN 285 (287)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 7999299999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.2e-24 Score=192.56 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=130.5
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECC-CCCCCCCCCCCEEEEEEC
Q ss_conf 9388896279999998379999860899899999689829998345777850588501023-578996212504899935
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQ 1145 (1348)
Q Consensus 1067 ~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~~h~~~V~s~~~~v~ws~ 1145 (1348)
|+..+.+++|. ..|++++| ++++.+|++|+.||.|++||+.+ ++.. +.+ .+|...+.+ +.|++
T Consensus 2 g~~~~~~~GH~---~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~--~~~~-----~~~~~~h~~~v~~----v~~~~ 65 (299)
T d1nr0a2 2 GSIDQVRYGHN---KAITALSS--SADGKTLFSADAEGHINSWDIST--GISN-----RVFPDVHATMITG----IKTTS 65 (299)
T ss_dssp TEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT--CCEE-----ECSSCSCSSCEEE----EEECT
T ss_pred CCCCEECCCCC---CCCEEEEE--CCCCCEEEEECCCCEEEEEECCC--CCEE-----EEECCCCCCCEEE----EEEEC
T ss_conf 86136848888---78289999--79999999990899299999999--9688-----9983788774899----88403
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEE--EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 99969999879829999877896035--5315999998179997649999999996798099998889970257415788
Q 000697 1146 QSGYLYASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1223 (1348)
Q Consensus 1146 ~~~~Llsgg~Dg~I~IWDl~t~~~~i--~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~ 1223 (1348)
++ .+++++.|+.+++|+..... .. ..........+.++ .+.+++..+++++ ++.+++|+.... .... .
T Consensus 66 ~g-~~~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~s~~g~~~~~~~-~~~i~~~~~~~~---~~~~--~- 135 (299)
T d1nr0a2 66 KG-DLFTVSWDDHLKVVPAGGSG-VDSSKAVANKLSSQPLGL-AVSADGDIAVAAC-YKHIAIYSHGKL---TEVP--I- 135 (299)
T ss_dssp TS-CEEEEETTTEEEEECSSSSS-SCTTSCCEEECSSCEEEE-EECTTSSCEEEEE-SSEEEEEETTEE---EEEE--C-
T ss_pred CC-EEECCCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCCCCCCCCCCC---CCCC--C-
T ss_conf 31-12102310268873167762-011100011113443210-0112211111222-222211111111---1101--1-
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-C
Q ss_conf 788785999992299999999997899399998688973169990589986999990799999999679909999769-9
Q 000697 1224 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-G 1302 (1348)
Q Consensus 1224 ~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~-g 1302 (1348)
...+.+++++|+ +..+++|+.||.|++||+++..........|...|++++|+|++.++++++.|+.|++|+.. +
T Consensus 136 --~~~~~~~~~s~~--~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 136 --SYNSSCVALSND--KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp --SSCEEEEEECTT--SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred --CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --112332211111--1111111111111111111111111111111111111111111111111111111111111111
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 2689994557864545667838999947997999998898099929
Q 000697 1303 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1303 ~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+..... ...|...|++++|+|++.+|++|+.||.|++|+
T Consensus 212 ~~~~~~~~-----~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 212 FELAHTNS-----WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp TEESCCCC-----CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE
T ss_conf 11111111-----111111111112466645138882899799998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.7e-24 Score=187.15 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=181.9
Q ss_pred CCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCE--------EEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-
Q ss_conf 899828999958--999999997899499998799938--------889627999999837999986089989999968-
Q 000697 1034 FEKGTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC- 1102 (1348)
Q Consensus 1034 ~~~~I~sl~fsp--dg~~Latgs~dg~I~IWd~~t~~~--------i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~- 1102 (1348)
+...|++++|+| ++.+|++|+.||+|+|||+..++. ...+..|. ..|.+++| ++++.++++++.
T Consensus 62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~--s~~~~~l~~~~~~ 136 (325)
T d1pgua1 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA---GPISDISW--DFEGRRLCVVGEG 136 (325)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS---SCEEEEEE--CTTSSEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC---CCEEEEEE--CCCCCCCCEEECC
T ss_conf 999889999811799979999948997798540588621565100254113656---73779998--9998822010012
Q ss_pred -CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCEEEEEECCCCCEEEEEECCC--C
Q ss_conf -98299983457778505885010235789962125048999359996-9999879829999877896035531599--9
Q 000697 1103 -NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSS--S 1178 (1348)
Q Consensus 1103 -DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llsgg~Dg~I~IWDl~t~~~~i~~l~~~--~ 1178 (1348)
++.+++|+..+ ++. + ..+.+|...+.+ +.|++++.. +++++.|+.|++||....+ ....+..+ +
T Consensus 137 ~~~~~~~~~~~~--~~~--~---~~~~~h~~~v~~----~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~ 204 (325)
T d1pgua1 137 RDNFGVFISWDS--GNS--L---GEVSGHSQRINA----CHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQ 204 (325)
T ss_dssp SSCSEEEEETTT--CCE--E---EECCSCSSCEEE----EEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCT
T ss_pred CCCEEEEEEECC--CCC--C---EEEEECCCCCCC----CCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCC
T ss_conf 440478885023--311--0---012001234321----11123432068886211122111122110-00000001577
Q ss_pred CCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE---CCCCCCEEEEEECCCCEEE
Q ss_conf 998179997649-999999996798099998889970257415788788785999992---2999999999978993999
Q 000697 1179 DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ---PGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1179 ~~~VtsL~~~s~-dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~s---p~~~g~~LvSgs~DG~I~I 1254 (1348)
...|+++ .+++ .+.++++++.||.|++||.++++ .+..++. |...+.++.|+ ++ +.+|++++.|+.|++
T Consensus 205 ~~~v~~v-~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~---~~~~v~~~~~s~~~~d--g~~l~s~s~D~~i~i 277 (325)
T d1pgua1 205 GSFVRDV-EFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIED---DQEPVQGGIFALSWLD--SQKFATVGADATIRV 277 (325)
T ss_dssp TCCEEEE-EECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCB---TTBCCCSCEEEEEESS--SSEEEEEETTSEEEE
T ss_pred CCCCEEE-EECCCCCEECCCCCCCCCEEEEEECCCC-CCCCCCC---CCCCCCCCEEEEECCC--CCEEEEEECCCEEEE
T ss_conf 7752776-3034531000011233210134300122-2111111---1111111000000368--999999958993999
Q ss_pred EECCCCCCCEEEEECCCCC--EEEEEEECC-CCEEEEEECCCCEEEEEC
Q ss_conf 9868897316999058998--699999079-999999967990999976
Q 000697 1255 LDIRNHKDAYLTIDAHRGS--LSALAVHRH-APIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1255 WDlr~~~~~i~tl~~h~~~--ItsLafspd-g~~LasgS~Dg~I~Iwd~ 1300 (1348)
||++++ +++..+..|... ...+++.+. ..++++++.||.|++||+
T Consensus 278 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 278 WDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EETTTT-EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EECCCC-CEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 999999-788999954874067699999889999999979999999979
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-22 Score=178.40 Aligned_cols=242 Identities=14% Similarity=0.258 Sum_probs=155.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89982899995899999999789949999879993888962799999983799998608998999996898299983457
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~ 1113 (1348)
|...|++++|+++ .+|++|+.|+.|++|+....+......... ...........+++..+++++.|+.|++|++..
T Consensus 52 H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~ 127 (355)
T d1nexb2 52 HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127 (355)
T ss_dssp CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCS---SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEECCCCCEEEEECCC
T ss_conf 9998899998699-999999645244321111111111110011---111111111112322045543888689998567
Q ss_pred CCCCE----------------------------------------EEEE----------------EEECCCCCCCCCCCC
Q ss_conf 77850----------------------------------------5885----------------010235789962125
Q 000697 1114 QKDKQ----------------------------------------KLVT----------------AFSSIQGHKPGVRCS 1137 (1348)
Q Consensus 1114 ~~~~~----------------------------------------~lvs----------------~~~~l~~h~~~V~s~ 1137 (1348)
..... .+.. ......++...+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-- 205 (355)
T d1nexb2 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-- 205 (355)
T ss_dssp -----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE--
T ss_pred CCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCC--
T ss_conf 730012465200010000011234012101100222100002563344211442044430131100011000123321--
Q ss_pred CEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 04899935999699998798299998778960355315999998179997649999999996798099998889970257
Q 000697 1138 NVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1217 (1348)
Q Consensus 1138 ~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~ 1217 (1348)
.+.|++.+..+++++.|+.|++||.+++. ++..+.+|... |.++ .+ +++++++|+.||.|++||++.......
T Consensus 206 --~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~-v~~~-~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 278 (355)
T d1nexb2 206 --STIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTAL-VGLL-RL--SDKFLVSAAADGSIRGWDANDYSRKFS 278 (355)
T ss_dssp --EEEEETTTTEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-CCEE-EE--CSSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred --CCCCCCCCEEEECCCCCCEEEEEECCCCC-CCCCCCCCCCC-CCCC-CC--CCCEEEEEECCCCCCCCCCCCCCEECC
T ss_conf --11111210021012456368763012211-11111111111-1111-23--210033320111111111111110001
Q ss_pred EECCCCCCCCCEEEEE-EECCCCCCEEEEEECCCCEEEEECCCCCCCEE-EEECCCCCEEEEEEECCCCEEEEEECCCCE
Q ss_conf 4157887887859999-92299999999997899399998688973169-990589986999990799999999679909
Q 000697 1218 STRPHTQQVERVVGIS-FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1218 ~~~~~~~h~~~I~si~-~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~-tl~~h~~~ItsLafspdg~~LasgS~Dg~I 1295 (1348)
.|...+.++. +.++ +.++++|+ ||.|++||++++ +.+. .+.+|.+.|++++|+++ .++++++.||.+
T Consensus 279 ------~~~~~~~~~~~~~~~--~~~l~~g~-d~~i~vwd~~tg-~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~ 347 (355)
T d1nexb2 279 ------YHHTNLSAITTFYVS--DNILVSGS-ENQFNIYNLRSG-KLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347 (355)
T ss_dssp ------EECTTCCCCCEEEEC--SSEEEEEE-TTEEEEEETTTC-CBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred ------CCCCCCEEEEEECCC--CCEEEEEE-CCEEEEEECCCC-CEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCE
T ss_conf ------246882299998499--98999980-997999999999-7988884589998999998399-199999898909
Q ss_pred EEEE
Q ss_conf 9997
Q 000697 1296 KVFS 1299 (1348)
Q Consensus 1296 ~Iwd 1299 (1348)
+||.
T Consensus 348 ~l~~ 351 (355)
T d1nexb2 348 FLEI 351 (355)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.9e-23 Score=179.73 Aligned_cols=139 Identities=20% Similarity=0.324 Sum_probs=66.7
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC------CCCCCCEEEEEEECCCCCEEEEEECCC---EEEEEECCC
Q ss_conf 99935999699998798299998778960355315------999998179997649999999996798---099998889
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP------SSSDCSISALTASQVHGGQLAAGFVDG---SVRLYDVRT 1211 (1348)
Q Consensus 1141 v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~------~~~~~~VtsL~~~s~dg~~LvsGs~DG---~IrIwDlr~ 1211 (1348)
++|+++ +.+++|+.||.|++||+.+++ ++..+. .|.. +|+++ .++|++++|++|+.|+ .|++||+++
T Consensus 190 v~~s~d-g~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~~-~V~~l-~~spdg~~l~sgs~D~t~~~i~lwd~~~ 265 (393)
T d1sq9a_ 190 VDISER-GLIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSN-SIRSV-KFSPQGSLLAIAHDSNSFGCITLYETEF 265 (393)
T ss_dssp EEECTT-SEEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCC-CEEEE-EECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred EEECCC-CEEEEEECCCCEEEEEECCCC-CCCCCCCCCCCCCCCC-EEEEC-CCCCCCCEEEEECCCCCCCEEEECCCCC
T ss_conf 997899-989999389829998602332-1100001111124256-38770-0466532011242898842100103532
Q ss_pred CCEEEEEEC----------CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEE----EE
Q ss_conf 970257415----------7887887859999922999999999978993999986889731699905899869----99
Q 000697 1212 PDMLVCSTR----------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS----AL 1277 (1348)
Q Consensus 1212 ~~~~v~~~~----------~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~It----sL 1277 (1348)
+. ....+. ...+|...|++++|+|+ +++|++|+.|+.|++||+.++ +++.++.+|.+.|. .+
T Consensus 266 g~-~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd--~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~ 341 (393)
T d1sq9a_ 266 GE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS--GETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDIL 341 (393)
T ss_dssp CC-EEEEECBC--------CCBSBSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCC
T ss_pred CE-EEEEECCCCCCCCCEEEEECCCCCEEEECCCCC--CCEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCCCCCCEE
T ss_conf 13-444311566664310232023586660013898--880698779998999999999-79999988687613773489
Q ss_pred EEECCCCEEE
Q ss_conf 9907999999
Q 000697 1278 AVHRHAPIIA 1287 (1348)
Q Consensus 1278 afspdg~~La 1287 (1348)
+|++++..++
T Consensus 342 ~~~~~~~~~~ 351 (393)
T d1sq9a_ 342 AVDEHGDSLA 351 (393)
T ss_dssp CBCTTSCBCS
T ss_pred EECCCCCEEE
T ss_conf 9999999999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.2e-22 Score=171.50 Aligned_cols=239 Identities=15% Similarity=0.337 Sum_probs=172.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEE----------------------------
Q ss_conf 8998289999589999999978994999987999388896279999998379----------------------------
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK---------------------------- 1085 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~Its---------------------------- 1085 (1348)
|...|.+++|+++ +|++|+.|+.+++|+............+. ..+..
T Consensus 56 h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 130 (342)
T d2ovrb2 56 HTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHT---STVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130 (342)
T ss_dssp CSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTEEEEEETTSEEEEEESSSCCEE
T ss_pred CCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCCCCC---EEEEEEECCCCCCCCCCCCEEEEEEECCCCCCE
T ss_conf 8999899994798--63210000011111111000000012333---047652024652212344403787403556300
Q ss_pred ----------EEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf ----------9998608998999996898299983457778505885010235789962125048999359996999987
Q 000697 1086 ----------LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155 (1348)
Q Consensus 1086 ----------I~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~ 1155 (1348)
... ......+++++.|+.|++|+... .. .+ ..+.+|...+ ..+..++..+++++.
T Consensus 131 ~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~--~~--~~---~~~~~~~~~~------~~~~~~~~~l~s~~~ 195 (342)
T d2ovrb2 131 HVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPET--ET--CL---HTLQGHTNRV------YSLQFDGIHVVSGSL 195 (342)
T ss_dssp EEEECCSSCEEEE--EECSSCEEEEETTSCEEEEEGGG--TE--EE---EEECCCSSCE------EEEEECSSEEEEEET
T ss_pred EEEECCCCCCEEE--CCCCCEEEEECCCCEEEEEECCC--CE--EE---EEECCCCCCC------CCCCCCCCEEEEEEC
T ss_conf 1110011110000--01333024335898699952523--43--66---7872754442------100689999999958
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 98299998778960355315999998179997649999999996798099998889970257415788788785999992
Q 000697 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1156 Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~s 1235 (1348)
||.|++||++... ++..+..|... +.++ .+ +++++++|+.||.|++||....+ ....+..+..|...+.++.++
T Consensus 196 dg~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (342)
T d2ovrb2 196 DTSIRVWDVETGN-CIHTLTGHQSL-TSGM-EL--KDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN 269 (342)
T ss_dssp TSCEEEEETTTCC-EEEEECCCCSC-EEEE-EE--ETTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEECCCCE-EEEEECCCCCC-EEEE-EC--CCCEEEEECCCCEEEEEECCCCC-CCCCCCCCCEEEECEEECCCC
T ss_conf 9939995255653-65674166532-0577-06--89999997489889998655442-211122100011010000137
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-----CCCCCEEEEEEECCCCEEEEEECCCC----EEEEECCCC
Q ss_conf 299999999997899399998688973169990-----58998699999079999999967990----999976992
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-----AHRGSLSALAVHRHAPIIASGSAKQL----IKVFSLEGE 1303 (1348)
Q Consensus 1236 p~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~-----~h~~~ItsLafspdg~~LasgS~Dg~----I~Iwd~~g~ 1303 (1348)
++++++|+.||.|++||++++ +.+.++. +|.+.|++++|+|++.++++|+.||+ |++||++-+
T Consensus 270 ----~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 270 ----KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp ----SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ----CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf ----984499908998999999999-798998623478988978999987999899999689997048999938998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.3e-22 Score=177.79 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=112.0
Q ss_pred CCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 899828999958999-9999978994999987999388896279999998379999860899899999689829998345
Q 000697 1034 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~-~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~ 1112 (1348)
|...|.+++|++++. +|++|+.||.|++|+............+. .......+. .++...+++++.++.+++||..
T Consensus 55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~ 130 (342)
T d1yfqa_ 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE---ANLGICRIC-KYGDDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCC---CCSCEEEEE-EETTTEEEEEETTSEEEEECHH
T ss_pred CCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCC---CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECC
T ss_conf 999889999958999789981265311454204432000001111---111111111-1111111110122211102023
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCCCEEEEEEECC
Q ss_conf 77785058850102357899621250489993599969999879829999877896035531--5999998179997649
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI--PSSSDCSISALTASQV 1190 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l--~~~~~~~VtsL~~~s~ 1190 (1348)
......... .....+...... ....+......+++++.|+.|++||+.... ..... .......+.+....+.
T Consensus 131 ~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 204 (342)
T d1yfqa_ 131 NYGDGVIAV---KNLNSNNTKVKN--KIFTMDTNSSRLIVGMNNSQVQWFRLPLCE-DDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp HHTTBCEEE---EESCSSSSSSCC--CEEEEEECSSEEEEEESTTEEEEEESSCCT-TCCCEEEECSCSSCEEEEEECSG
T ss_pred CCCCCEEEE---CCCCCCCCCCEE--EEEEEECCCCCEEEECCCCCEEEEECCCCC-CCCEEEEECCCCCCEEEEEEECC
T ss_conf 444330230---002430012000--001000168702465179847887605676-34111210254221014676369
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEE-----------EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 99999999679809999888997025-----------7415788788785999992299999999997899399998688
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLV-----------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1191 dg~~LvsGs~DG~IrIwDlr~~~~~v-----------~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~ 1259 (1348)
++..+++++.||.+.+|+........ .......+|...+++++|+|+ +++|++|+.||.|++||+++
T Consensus 205 ~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR--HKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT--TCCEEEEETTSCEEEEETTT
T ss_pred CCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCC--CCEEEEECCCCEEEEEECCC
T ss_conf 9987886548995999980598640111235125655531477762354315996698--44799987999899999998
Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 9731699905899869999907999999996799099997
Q 000697 1260 HKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1260 ~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd 1299 (1348)
. +.+.++..+ .....++|++++.++++++.|..+++|.
T Consensus 283 ~-~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 283 R-KKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp T-EEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred C-CEEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 9-498870589-9987999994799999999199278830
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=8.4e-23 Score=179.10 Aligned_cols=269 Identities=11% Similarity=0.102 Sum_probs=195.2
Q ss_pred EEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC--EEEEEECCCCC
Q ss_conf 8999958-99999999789949999879993888962799999983799998608998999996898--29998345777
Q 000697 1039 KTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYDQK 1115 (1348)
Q Consensus 1039 ~sl~fsp-dg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG--~IrIWdl~~~~ 1115 (1348)
..-.|+| ||+++++++ +|.|++|+.+.+..+. + .|. ..|.++.| ++|++.|++++.+. .|++|+...
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~---~~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~-- 75 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEP---LRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRT-- 75 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCC---SCEEEEEE--CSSSEEEEEEEETTEEEEEEEETTT--
T ss_pred HCCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE-C-CCC---CCEEEEEE--CCCCCEEEEEECCCCCEEEEEECCC--
T ss_conf 00514688999999998-9969999899994899-1-699---98888999--8999999999928998999998999--
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf 85058850102357899621250489993599969999879829999877896035531599999817999764999999
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
+..+ .+..|...+.+ ++|++++.++++++.++.+++|+..++. +...+..+... +.++ .++++++++
T Consensus 76 ~~~~------~~~~~~~~v~~----~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~spdg~~l 142 (360)
T d1k32a3 76 GKAE------KFEENLGNVFA----MGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAM-ITDF-TISDNSRFI 142 (360)
T ss_dssp CCEE------ECCCCCCSEEE----EEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSC-CCCE-EECTTSCEE
T ss_pred CCEE------EEECCCCEEEE----EEECCCCCCCCEECCCCCCCCCCCCCCC-EEEEEECCCCC-CCCH-HHCCCEEEE
T ss_conf 9488------75089712774----1211454321000111110000012221-00000013552-0230-121322566
Q ss_pred EEEE----------CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC----
Q ss_conf 9996----------79809999888997025741578878878599999229999999999789939999868897----
Q 000697 1196 AAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---- 1261 (1348)
Q Consensus 1196 vsGs----------~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~---- 1261 (1348)
+.+. .++.+++||...++ ..... .+...+..+.|+|+ ++.|++++.++.+++||.....
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~----~~~~~~~~~~~spd--g~~l~~~s~~~~~~~~d~~~~~~~~~ 215 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT----TENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFSFE 215 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS----CSSSBEEEEEECTT--SCEEEEEESCCCCCEECSSSSCEECC
T ss_pred EEECCCCCCCEEECCCCCEEEECCCCCC-EEEEC----CCCCCCCCCCCCCC--CCEEEEEECCCCEECCCCCCCCEEEC
T ss_conf 5212331211000256542663045571-35303----54322110012577--99999995998557533354402320
Q ss_pred --CCEEEEECC------------------------------------CCCEEEEEEECCCC-------------EEEEEE
Q ss_conf --316999058------------------------------------99869999907999-------------999996
Q 000697 1262 --DAYLTIDAH------------------------------------RGSLSALAVHRHAP-------------IIASGS 1290 (1348)
Q Consensus 1262 --~~i~tl~~h------------------------------------~~~ItsLafspdg~-------------~LasgS 1290 (1348)
.....+..+ .+....+..++++. ++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
T d1k32a3 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295 (360)
T ss_dssp SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred CCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 36411798524696012068777671553113652665400101247675267541389856999973599706999648
Q ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 7990999976992689994557864545667838999947997999998898099929
Q 000697 1291 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1291 ~Dg~I~Iwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.++.|++||..+..+..+. +.|.+++|+||+++|++++.||.|++|+
T Consensus 296 ~~~~i~~~d~~~~~~~~~~-----------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 296 EKGVLLKYDVKTRKVTEVK-----------NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp CCEEEEEEETTTCCEEEEE-----------EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCCEEEEEC-----------CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9987999979997498864-----------8868799999898999997899499999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.2e-20 Score=160.16 Aligned_cols=232 Identities=18% Similarity=0.326 Sum_probs=160.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89982899995899999999789949999879993888962799999983799998608998999996898299983457
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~ 1113 (1348)
|...|++++| ++++|++|+.|+.|++|+...+........+. .... .+ ......++++..++.+++|+...
T Consensus 54 H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 54 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC---EAVL--HL--RFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC---SCEE--EE--ECCTTEEEEEETTSCEEEEECSS
T ss_pred CCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC---CCCC--CC--CCCCCCEEECCCCCCEEEEECCC
T ss_conf 7787763423--63002100111011000002464100111111---0000--11--11110000013566306861344
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 77850588501023578996212504899935999699998798299998778960355315999998179997649999
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
....... ..+..|...+.. ..+. ...+++++.|+.|++||.++.+ .+..+.++... +..+ .+ ++.
T Consensus 125 ~~~~~~~----~~~~~~~~~v~~----~~~~--~~~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~ 189 (293)
T d1p22a2 125 PTDITLR----RVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRG-IACL-QY--RDR 189 (293)
T ss_dssp SSCCEEE----EEECCCSSCEEE----EEEE--TTEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EE--ETT
T ss_pred CCCCCCC----CCCCCCCCCCCC----CEEC--CCCCCCCCCCCCEEEECCCCCC-EEEEECCCCCC-CCCC-CC--CCC
T ss_conf 5444212----100011354311----0000--0220110699860410078883-88997155445-3221-68--987
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCC--------CCCEE
Q ss_conf 9999967980999988899702574157887887859999922999999999978993999986889--------73169
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH--------KDAYL 1265 (1348)
Q Consensus 1194 ~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~--------~~~i~ 1265 (1348)
.+++++.||.|++||+++.. ...... ++...+... .++ +..+++|+.||.|++||+... ...+.
T Consensus 190 ~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~v~~~--~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (293)
T d1p22a2 190 LVVSGSSDNTIRLWDIECGA-CLRVLE---GHEELVRCI--RFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261 (293)
T ss_dssp EEEEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEEE--ECC--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred EEEEECCCCEEEEEECCCCE-EEEEEC---CCCEEEEEC--CCC--CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 58876589989998665561-466521---431000001--454--1079998679979999888886444567754557
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 9905899869999907999999996799099997
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1266 tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd 1299 (1348)
++.+|.+.|++++|+ +.+|++|+.||.|++||
T Consensus 262 ~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 262 TLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 845889988999971--99999992299899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.3e-20 Score=160.15 Aligned_cols=243 Identities=13% Similarity=0.179 Sum_probs=180.6
Q ss_pred CCCCCCCCCC-----CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE
Q ss_conf 8741111367-----89982899995899999999789949999879993888962799999983799998608998999
Q 000697 1024 NNPIACWDTR-----FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1024 ~~~i~~Wd~~-----~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lv 1098 (1348)
++.+..|+.. |...|.++.++++. .+++++.|+++++|+.... + .. ..+..+.+ .+++..++
T Consensus 30 Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~------~-~~---~~~~~~~~--~~~~~~~~ 96 (287)
T d1pgua2 30 DGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH------E-FG---SQPKVASA--NNDGFTAV 96 (287)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE------E-CS---SCEEEEEE--CSSSEEEE
T ss_pred CCEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCC------C-CC---CCEEEEEE--CCCCCEEE
T ss_conf 99199998999888877878999965997-2898861012221111111------1-12---21014664--16785699
Q ss_pred EEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEEEEECCC
Q ss_conf 9968982999834577785058850102357899621250489993599969999879-829999877896035531599
Q 000697 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSS 1177 (1348)
Q Consensus 1099 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~D-g~I~IWDl~t~~~~i~~l~~~ 1177 (1348)
+ +.++.+.+|+... +.... .+... ... ..+.+++..+++++.+ +.+++|++.... ....+...
T Consensus 97 ~-~~~~~~~~~~~~~--~~~~~-----~~~~~-~~~------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~~~~ 160 (287)
T d1pgua2 97 L-TNDDDLLILQSFT--GDIIK-----SVRLN-SPG------SAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDLKTP 160 (287)
T ss_dssp E-ETTSEEEEEETTT--CCEEE-----EEECS-SCE------EEEEECSSEEEEEETTTSCEEEEETTEEE-EEEECSSC
T ss_pred E-EECCCCEEEECCC--EEEEE-----ECCCC-CEE------EEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEEEC
T ss_conf 9-6033210000110--03543-----10122-203------56521475111000221000210001221-00012102
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC--------CCCCEEEEEECC
Q ss_conf 999817999764999999999679809999888997025741578878878599999229--------999999999789
Q 000697 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--------LDPAKIVSASQA 1249 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~--------~~g~~LvSgs~D 1249 (1348)
....++++ .+++++.+|++|+.||.|++||......... ...+|...|.+++|+|. .++.++++|+.|
T Consensus 161 ~~~~v~~~-~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D 236 (287)
T d1pgua2 161 LRAKPSYI-SISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236 (287)
T ss_dssp CSSCEEEE-EECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred CCCCEEEE-EECCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 47853699-9516765211011111100000023321100---0111111110000013654100126788702766499
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 939999868897316999058998699999079999999967990999976
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~ 1300 (1348)
+.|++||++...+.+..+.+|...|++++|++++ .+++++.|+.|++|++
T Consensus 237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 9599988899975899927878985899998999-8999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1.9e-20 Score=161.80 Aligned_cols=282 Identities=10% Similarity=0.053 Sum_probs=143.3
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 99999789949999879993888962799999983799998608998999996898299983457778505885010235
Q 000697 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1128 (1348)
Q Consensus 1049 ~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1128 (1348)
+++++..||.|+|||..+++.+.++..+. .+..++| +|||+++++++.||.|++||+.+ ++......++...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~----~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t--~~~~~~~~i~~~~ 105 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY----AVHISRM--SASGRYLLVIGRDARIDMIDLWA--KEPTKVAEIKIGI 105 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS----SEEEEEE--CTTSCEEEEEETTSEEEEEETTS--SSCEEEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC----CEEEEEE--CCCCCEEEEEECCCCEEEEECCC--CCEEEEEEEECCC
T ss_conf 99997599979999999995999996899----8038999--89999999995899889997568--8604899986788
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCC-----------------------------
Q ss_conf 78996212504899935999699998-798299998778960355315999-----------------------------
Q 000697 1129 GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS----------------------------- 1178 (1348)
Q Consensus 1129 ~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~~----------------------------- 1178 (1348)
+|...+.+ +.|++++.++++++ .++.+++||..+.. ++..+..+.
T Consensus 106 ~~~~~~~s----~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 106 EARSVESS----KFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp EEEEEEEC----CSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCCCEEEE----EEECCCCCEEEEEECCCCEEEEECCCCCC-EEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 87645885----00268898799963589769998577641-25786226777364364278850389987878788885
Q ss_pred -------------------------CCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf -------------------------998179997649999999996-798099998889970257415788788785999
Q 000697 1179 -------------------------DCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1232 (1348)
Q Consensus 1179 -------------------------~~~VtsL~~~s~dg~~LvsGs-~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si 1232 (1348)
...+..+ .+.+++++++++. .+..+.++|....+ .+...... .+.......
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 257 (426)
T d1hzua2 181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADG-GWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVG-KTPHPGRGA 257 (426)
T ss_dssp ETTTTEEEEEECSSSSSCEEEEEECCSSEEEE-EECTTSCEEEEEETTCSEEEEEETTTTE-EEEEEECS-SCCCCSCCE
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCCCEEE-EECCCCCEEEEEEECCCCEEEEECCCCC-EEEEECCC-CCCCCCCEE
T ss_conf 27897699999246652045775667753761-3778886788642011000000025562-78875058-744434201
Q ss_pred EEECCCCCCEEE--EEECCCCEEEEECCCCC------CCEEEEECCCCCEEEEEEECCCCEEEE-------EECCCCEEE
Q ss_conf 992299999999--99789939999868897------316999058998699999079999999-------967990999
Q 000697 1233 SFQPGLDPAKIV--SASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRHAPIIAS-------GSAKQLIKV 1297 (1348)
Q Consensus 1233 ~~sp~~~g~~Lv--Sgs~DG~I~IWDlr~~~------~~i~tl~~h~~~ItsLafspdg~~Las-------gS~Dg~I~I 1297 (1348)
.+... ....+. +.+.|+.+.+|+..... +...++.+|...+..++|+|++.++++ ++.+++|+|
T Consensus 258 ~~~~~-~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v 336 (426)
T d1hzua2 258 NFVHP-KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336 (426)
T ss_dssp EEEET-TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE
T ss_pred EEECC-CCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 10069-87745774157896598852256652033025868986688763678748998618885067988022887999
Q ss_pred EEC-CCCEEEEEECCCCCC--CCCCCCCEEEEEEECCCCEEEEE-----ECCCEEEECC
Q ss_conf 976-992689994557864--54566783899994799799999-----8898099929
Q 000697 1298 FSL-EGEQLGTIRYHHPSF--MAQKIGSVNCLTFHPYQVLLAAG-----SADACVSIHS 1348 (1348)
Q Consensus 1298 wd~-~g~~l~~i~~~h~~f--~~~~~~~Vtslafspdg~~Latg-----s~Dg~I~IWd 1348 (1348)
||+ +++...++.. +... ...+...+.+++|+|||+.++.+ +.||.|+|||
T Consensus 337 wd~~t~~~~~~~~~-~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 337 FDLKNLDAKYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp EETTCTTSCCEEEC-HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred EECCCCCCCEEEEC-CCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 98987876708950-21102567788518987999999999999724888898299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=9.7e-17 Score=134.70 Aligned_cols=257 Identities=13% Similarity=0.145 Sum_probs=114.4
Q ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 99789949999879993888962799999983799998608998999-99689829998345777850588501023578
Q 000697 1052 AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130 (1348)
Q Consensus 1052 tgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lv-tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h 1130 (1348)
+++.+++|.|||.++++.+.++.... .+..++| ++|+++|+ +++.++.|++||..+ ++ .+ +.+..+
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~~g~----~p~~va~--spdG~~l~v~~~~~~~i~v~d~~t--~~--~~---~~~~~~ 73 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVI--SPDGTKVYVANAHSNDVSIIDTAT--NN--VI---ATVPAG 73 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSS----SEEEEEE--CTTSSEEEEEEGGGTEEEEEETTT--TE--EE---EEEECS
T ss_pred EECCCCEEEEEECCCCEEEEEEECCC----CCEEEEE--ECCCCEEEEEECCCCEEEEEECCC--CC--EE---EEEECC
T ss_conf 97899989999999995999998899----8369999--289899999978999899999998--94--10---320002
Q ss_pred CCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEE-EEECCCEEEEEE
Q ss_conf 996212504899935999699998-798299998778960355315999998179997649999999-996798099998
Q 000697 1131 KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGSVRLYD 1208 (1348)
Q Consensus 1131 ~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~DG~IrIwD 1208 (1348)
. .... +.|++++..+++++ .++.+.+|+..+++ ....+..+.. ..++ .+.+++..++ ++..++.+.+|+
T Consensus 74 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 74 S-SPQG----VAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTGKS--PLGL-ALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp S-SEEE----EEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSSS--EEEE-EECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCC----CCCCCCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCC--CEEE-EEECCCCEEEEEECCCCCEEEEE
T ss_conf 4-6431----10001111111111111001100124302-4320244444--2378-76058971554201111001100
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf 88997025741578878878599999229999999999789-93999986889731699905899869999907999999
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1287 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~D-G~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~La 1287 (1348)
..+.. ........ ..+..+.++++ +..+++++.+ +.+.+|+.... ........ ......+++++++..++
T Consensus 145 ~~~~~-~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~g~~~~ 215 (301)
T d1l0qa2 145 TVTKA-VINTVSVG----RSPKGIAVTPD--GTKVYVANFDSMSISVIDTVTN-SVIDTVKV-EAAPSGIAVNPEGTKAY 215 (301)
T ss_dssp TTTTE-EEEEEECC----SSEEEEEECTT--SSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSEEEEEEECTTSSEEE
T ss_pred CCCCC-EEEECCCC----CCCEEEEEECC--CCCEEEECCCCCCCCCCCCCCE-EEEECCCC-CCCCCEEECCCCCCCCC
T ss_conf 01463-03531567----88428886046--5401310121111111111100-01110133-57750311011110111
Q ss_pred EEEC---CCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE-EEEECCCEEEECC
Q ss_conf 9967---990999976-99268999455786454566783899994799799-9998898099929
Q 000697 1288 SGSA---KQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~---Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~L-atgs~Dg~I~IWd 1348 (1348)
.++. ++.|++||. +++.+..+.. + ..+.+++|+|++++| ++++.|+.|++||
T Consensus 216 v~~~~~~~~~v~v~D~~t~~~~~~~~~-~--------~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 216 VTNVDKYFNTVSMIDTGTNKITARIPV-G--------PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEEC-C--------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCEEEEEEEEECCCCEEEEEECC-C--------CCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 100210000232365699819999848-9--------98779999189899999989999699999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=8.1e-20 Score=157.26 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=177.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 7899828999958999999997899--49999879993888962799999983799998608998999996898299983
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg--~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWd 1110 (1348)
.|...|.+++|+|++++|++++.++ .|++||.++++. ..+..|. ..+.+++| ++++.+|++++.++.+++|+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~---~~v~~~~~--spdg~~l~~~~~~~~~~~~~ 113 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENL---GNVFAMGV--DRNGKFAVVANDRFEIMTVD 113 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCC---CSEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCC---CEEEEEEE--CCCCCCCCEECCCCCCCCCC
T ss_conf 699988889998999999999928998999998999948-8750897---12774121--14543210001111100000
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE----------CCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 45777850588501023578996212504899935999699998----------79829999877896035531599999
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG----------EVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg----------~Dg~I~IWDl~t~~~~i~~l~~~~~~ 1180 (1348)
... ++... .+..+...+.+ +.|++++..++.++ .++.+++||..+++ ... +..+..
T Consensus 114 ~~~--~~~~~-----~~~~~~~~~~~----~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~-~~~~~~- 179 (360)
T d1k32a3 114 LET--GKPTV-----IERSREAMITD----FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFA-ATTENS- 179 (360)
T ss_dssp TTT--CCEEE-----EEECSSSCCCC----EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEE-CSCSSS-
T ss_pred CCC--CCEEE-----EEECCCCCCCC----HHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCC-EEE-ECCCCC-
T ss_conf 122--21000-----00013552023----01213225665212331211000256542663045571-353-035432-
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE------EEEECCC--------------------------------
Q ss_conf 81799976499999999967980999988899702------5741578--------------------------------
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML------VCSTRPH-------------------------------- 1222 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~------v~~~~~~-------------------------------- 1222 (1348)
.+..+ .++++++.|++++.++.+++||....... ......+
T Consensus 180 ~~~~~-~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 258 (360)
T d1k32a3 180 HDYAP-AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258 (360)
T ss_dssp BEEEE-EECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE
T ss_pred CCCCC-CCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEE
T ss_conf 21100-12577999999959985575333544023203641179852469601206877767155311365266540010
Q ss_pred -CCCCCCEEEEEEECCCCCC-------------EEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf -8788785999992299999-------------99999789939999868897316999058998699999079999999
Q 000697 1223 -TQQVERVVGISFQPGLDPA-------------KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1223 -~~h~~~I~si~~sp~~~g~-------------~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~Las 1288 (1348)
....+....+...++ +. ++++++.++.+++||+... +. .. +.+.+.+++|+|||+.|++
T Consensus 259 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~-~~---~~~~v~~~~~SpDG~~l~~ 331 (360)
T d1k32a3 259 INVDPGDYRMIIPLES--SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-KV-TE---VKNNLTDLRLSADRKTVMV 331 (360)
T ss_dssp CSCCCBCEEEEEECSS--EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-CE-EE---EEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCEEEEEECCC--CCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC-EE-EE---ECCCCCEEEECCCCCEEEE
T ss_conf 1247675267541389--8569999735997069996489987999979997-49-88---6488687999998989999
Q ss_pred EECCCCEEEEEC-CCCEEEEEEC
Q ss_conf 967990999976-9926899945
Q 000697 1289 GSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1289 gS~Dg~I~Iwd~-~g~~l~~i~~ 1310 (1348)
++.||.|++|++ +++...++..
T Consensus 332 ~~~Dg~i~v~d~~~~~~~~~~~~ 354 (360)
T d1k32a3 332 RKDDGKIYTFPLEKPEDERTVET 354 (360)
T ss_dssp EETTSCEEEEESSCTTSCEECCC
T ss_pred EECCCEEEEEECCCCCCCEEEEE
T ss_conf 97899499999999985459984
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=7.2e-19 Score=150.30 Aligned_cols=279 Identities=9% Similarity=-0.004 Sum_probs=148.0
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 99999789949999879993888962799999983799998608998999996898299983457778505885010235
Q 000697 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1128 (1348)
Q Consensus 1049 ~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1128 (1348)
++++.+.+|.|.|||.++++.+..+..+. .+..++| ++||+++++++.||.|++||+.+ ++...+.......
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~----~~~~v~f--SpDG~~l~~~s~dg~v~~~d~~t--~~~~~~~~i~~~~ 105 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRL--SASGRYLFVIGRDGKVNMIDLWM--KEPTTVAEIKIGS 105 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEE--CTTSCEEEEEETTSEEEEEETTS--SSCCEEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC----CEEEEEE--CCCCCEEEEECCCCCEEEEEEEC--CCCEEEEEEECCC
T ss_conf 99997699979999899983999973799----7137998--89999999982899978998108--9812889984488
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCC----------CCCEEEEEEECCCCCEE-E
Q ss_conf 7899621250489993599969999-8798299998778960355315999----------99817999764999999-9
Q 000697 1129 GHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSS----------DCSISALTASQVHGGQL-A 1196 (1348)
Q Consensus 1129 ~h~~~V~s~~~~v~ws~~~~~Llsg-g~Dg~I~IWDl~t~~~~i~~l~~~~----------~~~VtsL~~~s~dg~~L-v 1196 (1348)
+|...+.+ ..|++++.+++++ ..++.|++||..+++ ++..+..+. ......+ .+++++..+ +
T Consensus 106 ~~~~~~~s----~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg~~~~v 179 (432)
T d1qksa2 106 EARSIETS----KMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAI-LASHYRPEFIV 179 (432)
T ss_dssp EEEEEEEC----CSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEE-EECSSSSEEEE
T ss_pred CCCCEEEE----CCCCCCCCEEEEECCCCCEEEEEECCCCC-CEEEECCCCCCCCCEECCCCCCEEEE-EECCCCCEEEE
T ss_conf 98776984----32188888899981789827999076554-22540247764352201688850589-98789998999
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCCCCEEEEE-------
Q ss_conf 99679809999888997025741578878878599999229999999999789-9399998688973169990-------
Q 000697 1197 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTID------- 1268 (1348)
Q Consensus 1197 sGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~D-G~I~IWDlr~~~~~i~tl~------- 1268 (1348)
+...++.|.+||....+.. ..... .+...+..+.++|+ ++++++++.+ +.+.++|.... +.+..+.
T Consensus 180 s~~~~~~i~~~d~~~~~~~-~~~~i--~~g~~~~~~~~spd--g~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~~ 253 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNL-KTTEI--SAERFLHDGGLDGS--HRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPH 253 (432)
T ss_dssp EETTTTEEEEEETTCSSEE-EEEEE--ECCSSEEEEEECTT--SCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBC
T ss_pred EECCCCEEEEEECCCCCCC-EEEEE--CCCCCCCCCEECCC--CCEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCCC
T ss_conf 9816882999984378752-27998--33675426538898--8799995166636777614452-68887214862245
Q ss_pred -------------------------------------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-C-------C
Q ss_conf -------------------------------------589986999990799999999679909999769-9-------2
Q 000697 1269 -------------------------------------AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-G-------E 1303 (1348)
Q Consensus 1269 -------------------------------------~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~-g-------~ 1303 (1348)
.|...+....+.+++..+++++.+...++|... . .
T Consensus 254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~ 333 (432)
T d1qksa2 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 333 (432)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred CCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEE
T ss_conf 67664101489883102135688358762456655546565777998868997688872688641021126788877035
Q ss_pred EEEEEECCCCC------------------CCCCCCCCEEEEEEECCCCEEEEEE-----CCCEEEECC
Q ss_conf 68999455786------------------4545667838999947997999998-----898099929
Q 000697 1304 QLGTIRYHHPS------------------FMAQKIGSVNCLTFHPYQVLLAAGS-----ADACVSIHS 1348 (1348)
Q Consensus 1304 ~l~~i~~~h~~------------------f~~~~~~~Vtslafspdg~~Latgs-----~Dg~I~IWd 1348 (1348)
.+..... ..- -...+...+.+++|+|||+.++.+. .||.|.|||
T Consensus 334 sv~vpDg-~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 334 SVAVFDI-KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp CEEEEEG-GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEEEEC-HHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 9999962-461045567844863343444457899868976798999999999704888888689999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.7e-17 Score=140.20 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=170.2
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 999999789949999879993888962799999983799998608998999-9968982999834577785058850102
Q 000697 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1048 ~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lv-tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+++++++.|++|.|||.++++.+..+..+... ..+.+++| ++|+++++ +++.++.|.+||+.+ ++.........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~-~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~ 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG-PTPMVPMV--APGGRIAYATVNKSESLVKIDLVT--GETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT-TCCCCEEE--CTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCB
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCC-CCCCEEEE--CCCCCEEEEEECCCCEEEEEECCC--CCEEEEEECCC
T ss_conf 69999767998999999999499999877889-98237999--999899999978999499999999--92988872477
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 3578996212504899935999699998------------7982999987789603553159999981799976499999
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG------------EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1127 l~~h~~~V~s~~~~v~ws~~~~~Llsgg------------~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
...+...... +.|++++..+++++ .++.+.+||..+.. ....+..+. .+.++ .+++++..
T Consensus 77 ~~~~~~~~~~----v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg~~ 148 (337)
T d1pbyb_ 77 PEERVKSLFG----AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPR--QITML-AWARDGSK 148 (337)
T ss_dssp TTEEEECTTC----EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCS--SCCCE-EECTTSSC
T ss_pred CCCCCCCEEE----EEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCE-EEEECCCCC--CCEEE-EECCCCCE
T ss_conf 7312540254----8986877579995047762034203455521203566775-988414568--72189-98688888
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCC---EEEEEEECC---------------CCCCEEEEEECCCCEEEEE
Q ss_conf 9999679809999888997025741578878878---599999229---------------9999999997899399998
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER---VVGISFQPG---------------LDPAKIVSASQAGDIQFLD 1256 (1348)
Q Consensus 1195 LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~---I~si~~sp~---------------~~g~~LvSgs~DG~I~IWD 1256 (1348)
+++++. .+.+||....+ ....+......... .....+.+. ........+..++.+.+||
T Consensus 149 l~~~~~--~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 149 LYGLGR--DLHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEEESS--SEEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEECC--CCCEEEEECCC-EEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEE
T ss_conf 999717--75056630372-788861477543311357763140146653124663244410366045403676179998
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 68897316999058998699999079999999967990999976-99268999455786454566783899994799799
Q 000697 1257 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1335 (1348)
Q Consensus 1257 lr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~L 1335 (1348)
...+......+..+...+..+.+++++.+++.+. +.|++||. +++.+..+.. . ..+.+++|+|++.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~--~-------~~~~~~~~s~dG~~l 294 (337)
T d1pbyb_ 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPL--P-------HSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEEC--S-------SCCCEEEECTTSCEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC--CCEEEEECCCCCEEEEECC--C-------CCEEEEEECCCCCEE
T ss_conf 6888588898328875058887426613999735--5289998988969999748--9-------988999997899999
Q ss_pred EEEECCCEEEECC
Q ss_conf 9998898099929
Q 000697 1336 AAGSADACVSIHS 1348 (1348)
Q Consensus 1336 atgs~Dg~I~IWd 1348 (1348)
++++.|+.|++||
T Consensus 295 ~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 295 WLGGALGDLAAYD 307 (337)
T ss_dssp EEESBSSEEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9994999299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=1.5e-15 Score=125.97 Aligned_cols=255 Identities=11% Similarity=0.153 Sum_probs=186.9
Q ss_pred CCCCCCCCCC---------CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCC
Q ss_conf 7411113678---------99828999958999999-9978994999987999388896279999998379999860899
Q 000697 1025 NPIACWDTRF---------EKGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1025 ~~i~~Wd~~~---------~~~I~sl~fspdg~~La-tgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~ 1094 (1348)
..+.+||... +..+..++|+|+|++|+ ++..++.|++||..+++.+..+..+. .+..+.| ++++
T Consensus 12 ~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----~~~~~~~--~~~~ 85 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQGVAV--SPDG 85 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEEEEE--CTTS
T ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC----CCCCCCC--CCCC
T ss_conf 989999999995999998899836999928989999997899989999999894103200024----6431100--0111
Q ss_pred CEEEE-EECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEE
Q ss_conf 89999-9689829998345777850588501023578996212504899935999699998-798299998778960355
Q 000697 1095 SLLLV-ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1095 ~~Lvt-gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~ 1172 (1348)
..+++ +..++.+.+|+... ++. . ..+.. ...... +.|++++..+++++ .++.+.+|+..+.. .+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~--~~~--~---~~~~~-~~~~~~----~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTTS--NTV--A---GTVKT-GKSPLG----LALSPDGKKLYVTNNGDKTVSVINTVTKA-VIN 152 (301)
T ss_dssp SEEEEEETTTTEEEEEETTT--TEE--E---EEEEC-SSSEEE----EEECTTSSEEEEEETTTTEEEEEETTTTE-EEE
T ss_pred CCCCCCCCCCCEEEECCCCC--CEE--E---EECCC-CCCCEE----EEEECCCCEEEEEECCCCCEEEEECCCCC-EEE
T ss_conf 11111111110011001243--024--3---20244-444237----87605897155420111100110001463-035
Q ss_pred EECCCCCCCEEEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC---
Q ss_conf 31599999817999764999999999679-80999988899702574157887887859999922999999999978---
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ--- 1248 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~--- 1248 (1348)
.+..+.. +..+ .+.+++..++++..+ +.+.+|+..... ........ .....+.++++ +..++.+..
T Consensus 153 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~--g~~~~v~~~~~~ 222 (301)
T d1l0qa2 153 TVSVGRS--PKGI-AVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVKVE----AAPSGIAVNPE--GTKAYVTNVDKY 222 (301)
T ss_dssp EEECCSS--EEEE-EECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS----SEEEEEEECTT--SSEEEEEEECSS
T ss_pred ECCCCCC--CEEE-EEECCCCCEEEECCCCCCCCCCCCCCEE-EEECCCCC----CCCCEEECCCC--CCCCCCCCCCCE
T ss_conf 3156788--4288-8604654013101211111111111000-11101335----77503110111--101111002100
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEE-EEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 99399998688973169990589986999990799999-9996799099997-69926899945
Q 000697 1249 AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1249 DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~L-asgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
++.|++||..++ +.+..+.. ...+.+++|+|+|+++ ++++.++.|++|| .+++.+.++..
T Consensus 223 ~~~v~v~D~~t~-~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 223 FNTVSMIDTGTN-KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CCEEEEEETTTT-EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEEECCCC-EEEEEECC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf 002323656998-19999848-998779999189899999989999699999999959999968
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=4.9e-18 Score=144.19 Aligned_cols=276 Identities=11% Similarity=0.057 Sum_probs=187.7
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEE-EECCCEEEEEECCCCCCCEE
Q ss_conf 99958999999997899499998799938889627999999837999986089989999-96898299983457778505
Q 000697 1041 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGNIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1041 l~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvt-gs~DG~IrIWdl~~~~~~~~ 1119 (1348)
++|++++++|++++.++.|.|||.++++.+.+++.+. +..+.+++| ++|++++++ ++.++.|.+||+.+ ++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~--spDG~~l~v~~~~~~~v~~~d~~t--~~~- 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDT--CKN- 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTT--TEE-
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCC--CCCCCEEEE--CCCCCEEEEEECCCCCEEEEECCC--CEE-
T ss_conf 5588999699998699979999999998999999489--997045999--789899999978999399996756--713-
Q ss_pred EEEEEECCC---CCCCCCCCCCEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCCC-CCCEE
Q ss_conf 885010235---78996212504899935999699998------------798299998778960355315999-99817
Q 000697 1120 LVTAFSSIQ---GHKPGVRCSNVVVDWQQQSGYLYASG------------EVSSIMLWDLEKEQQMVNPIPSSS-DCSIS 1183 (1348)
Q Consensus 1120 lvs~~~~l~---~h~~~V~s~~~~v~ws~~~~~Llsgg------------~Dg~I~IWDl~t~~~~i~~l~~~~-~~~Vt 1183 (1348)
+..+.... .+...+.. +.+++++..+++++ .++.+.+||..++. ....+..+. ...+.
T Consensus 75 -~~~~~~~~~~~~~~~~~~~----v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 148 (346)
T d1jmxb_ 75 -TFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFPMPRQVY 148 (346)
T ss_dssp -EEEEESCCSTTEEEECSSC----EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEECCSSCC
T ss_pred -EEEECCCCCCCCCCCCEEE----EEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE-EEEEEEEEECCCCEE
T ss_conf -1231036543454774179----9990588889997057752156514676248998525632-656887310247439
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC------------------------CC
Q ss_conf 999764999999999679809999888997025741578878878599999229------------------------99
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------------------------LD 1239 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~------------------------~~ 1239 (1348)
.+ ..+.++..+++ ++.+.+||..+.+ ....+.... ....+.++|+ ..
T Consensus 149 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (346)
T d1jmxb_ 149 LM-RAADDGSLYVA---GPDIYKMDVKTGK-YTVALPLRN----WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219 (346)
T ss_dssp CE-EECTTSCEEEE---SSSEEEECTTTCC-EEEEECSTT----CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred EE-EECCCCEEEEE---CCCCEEEECCCCC-EEEEEECCC----CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 99-95278789984---7962699806997-899996489----866237712552899986499816765123111267
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCC
Q ss_conf 9999999789939999868897316999058998699999079999999967990999976-992689994557864545
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQ 1318 (1348)
Q Consensus 1240 g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~~h~~f~~~ 1318 (1348)
...+.++..++.+.+||...+.........+...+..+.+++++..++.+.. +.|.+||. +++.+..+.. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~--~----- 291 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL--D----- 291 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--S-----
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECC--C-----
T ss_conf 3257540478349999777883687876315660688897179978999429-8389998999939999749--9-----
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 667838999947997999998898099929
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+.+++|+||+++|++++.|+.|++||
T Consensus 292 --~~~~~va~s~DG~~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 292 --HTYYCVAFDKKGDKLYLGGTFNDLAVFN 319 (346)
T ss_dssp --SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred --CCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf --9778999968999999994899299999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=5.9e-17 Score=136.27 Aligned_cols=272 Identities=10% Similarity=0.068 Sum_probs=174.5
Q ss_pred CCCCCCCCCCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE--EEECCCCCCCCEEEEEEEEEC
Q ss_conf 874111136789---------982899995899999999789949999879993888--962799999983799998608
Q 000697 1024 NNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNEL 1092 (1348)
Q Consensus 1024 ~~~i~~Wd~~~~---------~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~--~l~~h~~~~~~ItsI~f~ns~ 1092 (1348)
.+.+.+||.... ..+..++|+|||+++++++.|+++++||.++++... .+.....+...+.++.| ++
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~--sp 118 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK--GY 118 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST--TC
T ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEE--CC
T ss_conf 9979999999995999996899803899989999999995899889997568860489998678887645885002--68
Q ss_pred CCCEEEEE-ECCCEEEEEECCCCCCCEEEEEE--E---------------------------ECC---------------
Q ss_conf 99899999-68982999834577785058850--1---------------------------023---------------
Q 000697 1093 DVSLLLVA-SCNGNIRIWKDYDQKDKQKLVTA--F---------------------------SSI--------------- 1127 (1348)
Q Consensus 1093 d~~~Lvtg-s~DG~IrIWdl~~~~~~~~lvs~--~---------------------------~~l--------------- 1127 (1348)
|+++++++ ..++.+++||.... ....... . ...
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETL--EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTC--CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred CCCEEEEEECCCCEEEEECCCCC--CEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 89879996358976999857764--1257862267773643642788503899878787888852789769999924665
Q ss_pred ------CCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCC-CEEEEEEECCCCCEEE--E
Q ss_conf ------578996212504899935999699998-79829999877896035531599999-8179997649999999--9
Q 000697 1128 ------QGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDC-SISALTASQVHGGQLA--A 1197 (1348)
Q Consensus 1128 ------~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~~~~-~VtsL~~~s~dg~~Lv--s 1197 (1348)
..+...+ ..+.+++++.+++++. .+..+.+++...+. .+..+...... ......+......... .
T Consensus 197 ~~~~~~~~~~~~~----~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T d1hzua2 197 NLTVTSIGAAPFL----ADGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271 (426)
T ss_dssp SCEEEEEECCSSE----EEEEECTTSCEEEEEETTCSEEEEEETTTTE-EEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred CEEEEEECCCCCC----EEEEECCCCCEEEEEEECCCCEEEEECCCCC-EEEEECCCCCCCCCCEEEEECCCCCCEEEEC
T ss_conf 2045775667753----7613778886788642011000000025562-7887505874443420110069877457741
Q ss_pred EECCCEEEEEECCCCC------EEEEEECCCCCCCCCEEEEEEECCCCCCEEEE-------EECCCCEEEEECCCCCCCE
Q ss_conf 9679809999888997------02574157887887859999922999999999-------9789939999868897316
Q 000697 1198 GFVDGSVRLYDVRTPD------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-------ASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1198 Gs~DG~IrIwDlr~~~------~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvS-------gs~DG~I~IWDlr~~~~~i 1264 (1348)
...|+.+.+|+..... .... ...+|...+..++++|+ ++.+++ ++.+++|++||+.++ +..
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~---~l~g~~~~v~~v~~sPd--g~~l~v~~~~~~s~~~~~tv~vwd~~t~-~~~ 345 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVA---ELQGQGGGSLFIKTHPK--SSHLYVDTTFNPDARISQSVAVFDLKNL-DAK 345 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEE---EEECSSSCCCCEECCTT--CSEEEECCTTCSSHHHHTCEEEEETTCT-TSC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEE---EEECCCCCEEEEECCCC--CCEEEEEECCCCCCCCCCEEEEEECCCC-CCC
T ss_conf 57896598852256652033025868---98668876367874899--8618885067988022887999989878-767
Q ss_pred EEEE---------CCCCCEEEEEEECCCCEEEE-E----ECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 9990---------58998699999079999999-9----6799099997-69926899945
Q 000697 1265 LTID---------AHRGSLSALAVHRHAPIIAS-G----SAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1265 ~tl~---------~h~~~ItsLafspdg~~Las-g----S~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
.++. .+...+..++|+|||+.++. + +.++.|+||| .+++....++.
T Consensus 346 ~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 0895021102567788518987999999999999724888898299999998738999878
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=2.8e-15 Score=123.96 Aligned_cols=273 Identities=7% Similarity=-0.030 Sum_probs=167.0
Q ss_pred CCCCCCCCCCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf 874111136789---------982899995899999999789949999879993--888962799999983799998608
Q 000697 1024 NNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNEL 1092 (1348)
Q Consensus 1024 ~~~i~~Wd~~~~---------~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~--~i~~l~~h~~~~~~ItsI~f~ns~ 1092 (1348)
.+.+.+||.... ..+..++|+|||+++++++.|+.+++||+.+++ .+..++....+...+.+..| ++
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~--Sp 118 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME--GW 118 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST--TC
T ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCC--CC
T ss_conf 9979999899983999973799713799889999999982899978998108981288998448898776984321--88
Q ss_pred CCCEE-EEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCC-------CCCCEEEEEECCCCEEEEE-ECCCEEEEEE
Q ss_conf 99899-9996898299983457778505885010235789962-------1250489993599969999-8798299998
Q 000697 1093 DVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV-------RCSNVVVDWQQQSGYLYAS-GEVSSIMLWD 1163 (1348)
Q Consensus 1093 d~~~L-vtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V-------~s~~~~v~ws~~~~~Llsg-g~Dg~I~IWD 1163 (1348)
|+++| ++++.++.|++||..+ ++.... +..+...+ ..-...+.+++++..++++ ..++.|.+||
T Consensus 119 DG~~l~vs~~~~~~v~i~d~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 119 EDKYAIAGAYWPPQYVIMDGET--LEPKKI-----QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--CCEEEE-----EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEECCC--CCCEEE-----ECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 8888999817898279990765--542254-----024776435220168885058998789998999981688299998
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEECC---------------------
Q ss_conf 7789603553159999981799976499999999967-980999988899702574157---------------------
Q 000697 1164 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRP--------------------- 1221 (1348)
Q Consensus 1164 l~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG~IrIwDlr~~~~~v~~~~~--------------------- 1221 (1348)
....+ .........+..+..+ .++++++++++++. ++.+.++|....+. ......
T Consensus 192 ~~~~~-~~~~~~i~~g~~~~~~-~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~~ 268 (432)
T d1qksa2 192 YTDLN-NLKTTEISAERFLHDG-GLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVHPTFGPV 268 (432)
T ss_dssp TTCSS-EEEEEEEECCSSEEEE-EECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred CCCCC-CCEEEEECCCCCCCCC-EECCCCCEEEEECCCCCEEEEEECCCCEE-EEEECCCCCCCCCCCCCCEECCCCCCE
T ss_conf 43787-5227998336754265-38898879999516663677761445268-887214862245676641014898831
Q ss_pred --------------------CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC--------------------
Q ss_conf --------------------8878878599999229999999999789939999868897--------------------
Q 000697 1222 --------------------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------------------- 1261 (1348)
Q Consensus 1222 --------------------~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~-------------------- 1261 (1348)
+..|...+....+.++ +..+++++.+...++|+.....
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~--g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~ 346 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 346 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred ECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCC--CCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCC
T ss_conf 021356883587624566555465657779988689--976888726886410211267888770359999962461045
Q ss_pred ---CCEEEE--------ECCCCCEEEEEEECCCCEEEEEE-----CCCCEEEEE-CCCCEEEEEEC
Q ss_conf ---316999--------05899869999907999999996-----799099997-69926899945
Q 000697 1262 ---DAYLTI--------DAHRGSLSALAVHRHAPIIASGS-----AKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1262 ---~~i~tl--------~~h~~~ItsLafspdg~~LasgS-----~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
..++.+ ..|...+.+++|+|+|+.++.+. .++.|.||| .+++....++.
T Consensus 347 s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 347 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 567844863343444457899868976798999999999704888888689999999558868468
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=1.2e-13 Score=112.05 Aligned_cols=247 Identities=7% Similarity=0.020 Sum_probs=102.9
Q ss_pred EEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCCC----CCEEEEEEEEECCCCEEEEEE--CC
Q ss_conf 999958999999997----------89949999879993888962799999----983799998608998999996--89
Q 000697 1040 TALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFPD----KGISKLCLVNELDVSLLLVAS--CN 1103 (1348)
Q Consensus 1040 sl~fspdg~~Latgs----------~dg~I~IWd~~t~~~i~~l~~h~~~~----~~ItsI~f~ns~d~~~Lvtgs--~D 1103 (1348)
.++|+|||++|+++. .++.|.+||..+++.+..+..+.... .....+.| +++++.+++.. .+
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~ 147 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN--TPNNADLLFFQFAAG 147 (373)
T ss_pred CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEE--EECCCCEEEEEECCC
T ss_conf 079868999899996057753212453189999777893888972688513685168970899--858993799998698
Q ss_pred CEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE-EECCCEEEEEECCCCCEEEEEECCCC----
Q ss_conf 8299983457778505885010235789962125048999359996999-98798299998778960355315999----
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSS---- 1178 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lls-gg~Dg~I~IWDl~t~~~~i~~l~~~~---- 1178 (1348)
+.+.+|+... .+. . .+.....+ +.+++++..+++ .+.|+.+.+||..... .........
T Consensus 148 ~~~~~~~~~~--~~~--~-------~~~~~~~~----~~~s~~g~~~~v~~~~dg~~~~~~~~~~~-~~~~~~~~~~~~~ 211 (373)
T d2madh_ 148 PAVGLVVQGG--SSD--D-------QLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGA-AGAGLVGAMLTAA 211 (373)
T ss_pred CCEEEEECCC--CEE--E-------EEECCCEE----EEEECCCCCEEEEECCCCEEEEEECCCCE-EEEEEEEECCCCC
T ss_conf 7467762368--728--9-------98245206----99962899199999479939999747742-6678863003667
Q ss_pred -CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCC----------CCEEEEEEECC--------CC
Q ss_conf -998179997649999999996798099998889970257415788788----------78599999229--------99
Q 000697 1179 -DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV----------ERVVGISFQPG--------LD 1239 (1348)
Q Consensus 1179 -~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~----------~~I~si~~sp~--------~~ 1239 (1348)
....... ....+ ..++..+.++.+.+|+.......... ....+. .....+.++++ ..
T Consensus 212 ~~~~~~~~-~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 287 (373)
T d2madh_ 212 QNLLTQPA-QANKS-GRIVWPVYSGKILQADISAAGATNKA--PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred CCCEEEEE-EECCC-CEEEEECCCCEEEEEECCCCEEEEEE--EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 53043458-87899-42999258965999976899078977--6305647578664136741335771499759995488
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCC--EEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 999999978993999986889731699905899869999907999--999996799099997-69926899945
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1240 g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~--~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
+..++....++.+.+||..++ +.+..+. +...+..++|+|||+ ++++++.|+.|++|| .+++.+.++..
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCEEEEECCCCEEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 824786258986999989999-6989866-89982589999899989999967999299999999989999888
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=6.4e-15 Score=121.34 Aligned_cols=249 Identities=13% Similarity=0.133 Sum_probs=174.4
Q ss_pred CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCC--CCCEEEEEEEEECCCCEEEEEEC----------
Q ss_conf 9828999958999999-9978994999987999388896279999--99837999986089989999968----------
Q 000697 1036 KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASC---------- 1102 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~La-tgs~dg~I~IWd~~t~~~i~~l~~h~~~--~~~ItsI~f~ns~d~~~Lvtgs~---------- 1102 (1348)
..+..++|+|||++++ +++.++.|.+||+.+++.+..+..+... ...+..+.| ++++..+++++.
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE--CCCCCEEEEEECCCCCEEEECC
T ss_conf 98237999999899999978999499999999929888724777312540254898--6877579995047762034203
Q ss_pred --CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf --982999834577785058850102357899621250489993599969999879829999877896035531599999
Q 000697 1103 --NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1103 --DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~ 1180 (1348)
++.+.+|+..+ +.. . ..+. +...+.. +.|++++..+++++.+ +.+||..+++ ....+..+...
T Consensus 112 ~~~~~~~~~d~~~--~~~--~---~~~~-~~~~~~~----~~~s~dg~~l~~~~~~--~~~~d~~~~~-~~~~~~~~~~~ 176 (337)
T d1pbyb_ 112 VQPTRVALYDAET--LSR--R---KAFE-APRQITM----LAWARDGSKLYGLGRD--LHVMDPEAGT-LVEDKPIQSWE 176 (337)
T ss_dssp ECCCEEEEEETTT--TEE--E---EEEE-CCSSCCC----EEECTTSSCEEEESSS--EEEEETTTTE-EEEEECSTTTT
T ss_pred CCCCCEEECCCCC--CEE--E---EECC-CCCCCEE----EEECCCCCEEEEECCC--CCEEEEECCC-EEEEEECCCCC
T ss_conf 4555212035667--759--8---8414-5687218----9986888889997177--5056630372-78886147754
Q ss_pred CEEE-----E----------------EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 8179-----9----------------976499999999967980999988899702574157887887859999922999
Q 000697 1181 SISA-----L----------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1181 ~Vts-----L----------------~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~ 1239 (1348)
.... . .....+......+..++.+.+||...+......+. .+...+..+.++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 251 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPA-- 251 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTT--
T ss_pred CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC---CCCCCEEEEEECCC--
T ss_conf 3311357763140146653124663244410366045403676179998688858889832---88750588874266--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 999999978993999986889731699905899869999907999999996799099997-69926899945
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1240 g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
+..++.+ ++.+++||+.++ +.+..+. +...+.+++|+|+|.++++++.++.|.||| .+++.+.+++.
T Consensus 252 ~~~~~~~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 252 KTRAFGA--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEC--CCCEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 1399973--552899989889-6999974-899889999978999999994999299999998769899988
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4e-14 Score=115.54 Aligned_cols=275 Identities=12% Similarity=0.155 Sum_probs=121.9
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEE--CCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 9999789949999879993888962--799999983799998608998999996-8982999834577785058850102
Q 000697 1050 VVAADENERIKIWNYEEDTLLNSFD--NHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1050 Latgs~dg~I~IWd~~t~~~i~~l~--~h~~~~~~ItsI~f~ns~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
++++..+++|+||+++....+..++ .+. ..+.+++| +||+++|++++ .|+.|++|++.......+...
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---~~v~~la~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~---- 77 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA---- 77 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE----
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCC---CCEEEEEE--ECCCCEEEEEECCCCEEEEEEEECCCCCEEEEE----
T ss_conf 998789993899998399976999997579---98868999--589799999977899699999968987079853----
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEE--ECCCCCCCEEEEEEECCCCCEEEEEEC-CC
Q ss_conf 3578996212504899935999699998-7982999987789603553--159999981799976499999999967-98
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNP--IPSSSDCSISALTASQVHGGQLAAGFV-DG 1202 (1348)
Q Consensus 1127 l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~--l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG 1202 (1348)
...+...... ++|++++.++++++ .++.|.+|+..... .... ...+.. .+.++ .++++++.++.++. +.
T Consensus 78 ~~~~~~~p~~----l~~spDg~~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~-~~~~v-~~s~d~~~~~~~~~~~~ 150 (333)
T d1ri6a_ 78 ESALPGSLTH----ISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDVVEGLD-GCHSA-NISPDNRTLWVPALKQD 150 (333)
T ss_dssp EEECSSCCSE----EEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEEECCCT-TBCCC-EECTTSSEEEEEEGGGT
T ss_pred ECCCCCCCEE----EEECCCCCEEEECCCCCCCEEEECCCCCC-CEECCCCCCCCC-CCEEE-EEEECCEEEECCCCCCC
T ss_conf 0136998549----99959998874205688830220011100-000010037785-31498-86301013102565542
Q ss_pred EEEEEECCCCCEEEEEEC--CCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCCCCCE---EEEE------CC
Q ss_conf 099998889970257415--788788785999992299999999997-89939999868897316---9990------58
Q 000697 1203 SVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAY---LTID------AH 1270 (1348)
Q Consensus 1203 ~IrIwDlr~~~~~v~~~~--~~~~h~~~I~si~~sp~~~g~~LvSgs-~DG~I~IWDlr~~~~~i---~tl~------~h 1270 (1348)
.+.+|+............ ...........+.|+++ +..++... ..+...+|+........ .... ..
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN--EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT--SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred EEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECC--CEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCC
T ss_conf 0568973268741001000133403887527999602--01478620466721788510355520210022343068776
Q ss_pred CCCEEEEEEECCCCEEEE-EECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC-CCEEEEC
Q ss_conf 998699999079999999-9679909999769-926899945578645456678389999479979999988-9809992
Q 000697 1271 RGSLSALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVSIH 1347 (1348)
Q Consensus 1271 ~~~ItsLafspdg~~Las-gS~Dg~I~Iwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~I~IW 1347 (1348)
......++++++++++.. +..++.+.+|+.+ ......+.. +. .....+.+++|+|+|++|++++. ++.|++|
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~p~~~a~spDGk~l~va~~~~~~v~v~ 303 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG-FQ----PTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE-EE----ECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEE-EE----CCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 553126899515672055045688278788739997899999-96----7899762899907989999998899939999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=1.5e-13 Score=111.41 Aligned_cols=279 Identities=14% Similarity=0.120 Sum_probs=104.9
Q ss_pred EECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE----------CCCEE
Q ss_conf 9958999999997-----89949999879993888962799999983799998608998999996----------89829
Q 000697 1042 LLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNI 1106 (1348)
Q Consensus 1042 ~fspdg~~Latgs-----~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs----------~DG~I 1106 (1348)
+.+|++..+++.. .++.|.+||..+++.+.++..+. ...++| ++|++.|++.+ .++.|
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-----~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-----LPNPVV--ADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-----SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCC-----CCCEEE--CCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 65899999999826647776719999999994999998999-----985699--48999999996777642015899989
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 998345777850588501023578996212504899935999699998--798299998778960355315999998179
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg--~Dg~I~IWDl~t~~~~i~~l~~~~~~~Vts 1184 (1348)
++||..+ ++.... ......+...+......+.|++++..++++. .+..+.+||..++. .+..+...... ..
T Consensus 81 ~v~D~~t--~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ 153 (355)
T d2bbkh_ 81 EVFDPVT--LLPTAD--IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCY--HI 153 (355)
T ss_dssp EEECTTT--CCEEEE--EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEE--EE
T ss_pred EEEECCC--CCEEEE--EECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCC--EE
T ss_conf 9999999--979889--80588640311798734999338871577327988204543057883-76677058740--47
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-EC-CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 9976499999999967980999988899702574-15-788788785999992299999999997899399998688973
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS-TR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~-~~-~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~ 1262 (1348)
. .......++.+.||....+........... .. ....+...+....+.+. +..++.++.++.+.+|+...+..
T Consensus 154 ~---~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 154 F---PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK--AGRLVWPTYTGKIHQIDLSSGDA 228 (355)
T ss_dssp E---EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT--TTEEEEEBTTSEEEEEECTTSSC
T ss_pred E---ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCC--CCEEEEECCCCEEEEEECCCCCE
T ss_conf 3---069963699938999899983478737999624333000110610215389--97388746998299996589907
Q ss_pred C-EEEEECC----------CCCEEEEEEECCCCEEEEEECC----------CCEEEEE-CCCCEEEEEECCCCCCCCCCC
Q ss_conf 1-6999058----------9986999990799999999679----------9099997-699268999455786454566
Q 000697 1263 A-YLTIDAH----------RGSLSALAVHRHAPIIASGSAK----------QLIKVFS-LEGEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1263 ~-i~tl~~h----------~~~ItsLafspdg~~LasgS~D----------g~I~Iwd-~~g~~l~~i~~~h~~f~~~~~ 1320 (1348)
. +.....+ ......+++++++..++....+ ..|.+|| .+++.+..+.. .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~-------- 299 (355)
T d2bbkh_ 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G-------- 299 (355)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E--------
T ss_pred EEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-C--------
T ss_conf 9984457844126854330351089998079976788740687126517997599986788849899668-9--------
Q ss_pred CCEEEEEEECCCC--EEEEEECCCEEEECC
Q ss_conf 7838999947997--999998898099929
Q 000697 1321 GSVNCLTFHPYQV--LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~--~Latgs~Dg~I~IWd 1348 (1348)
..+.+++|+|+++ ++++++.|+.|.+||
T Consensus 300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 987799992899969999978999899999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.69 E-value=8.7e-12 Score=98.39 Aligned_cols=282 Identities=12% Similarity=-0.031 Sum_probs=180.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE------
Q ss_conf 7899828999958999999997-----89949999879993888962799999983799998608998999996------
Q 000697 1033 RFEKGTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS------ 1101 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs-----~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs------ 1101 (1348)
.+..++..++++|+++.+++.. ..+.+.+||.++++.+.++..+. . ..+.| ++|++++++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---~--~~~a~--SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---L--PNPVA--AHSGSEFALASTSFSRI 90 (373)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC---C--CCEEE--CCCCCEEEEEEECCCCC
T ss_conf 67898656301899978999734225787659999899997999995798---8--60798--68999899996057753
Q ss_pred ----CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC---CCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEE
Q ss_conf ----8982999834577785058850102357899621---2504899935999699998--798299998778960355
Q 000697 1102 ----CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR---CSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1102 ----~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~---s~~~~v~ws~~~~~Llsgg--~Dg~I~IWDl~t~~~~i~ 1172 (1348)
.++.|.+||..+ ++.... +..+..... .....+.|++++..+++.. .++.+.+|+....+ ...
T Consensus 91 ~~~~~~~~v~v~D~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~ 162 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVT--FLPIAD-----IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-DDQ 162 (373)
T ss_pred CCCCCCEEEEEEECCC--CCEEEE-----EECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCE-EEE
T ss_conf 2124531899997778--938889-----72688513685168970899858993799998698746776236872-899
Q ss_pred EECCCCCCCEEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCC--CCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 31599999817999764999-9999996798099998889970257415788--78878599999229999999999789
Q 000697 1173 PIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--QQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~--~h~~~I~si~~sp~~~g~~LvSgs~D 1249 (1348)
.... ..++ .+.+++ ..+++.+.||.+.+||............... +.........+.++ ..++..+.+
T Consensus 163 ~~~~-----~~~~-~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 233 (373)
T d2madh_ 163 LLSS-----PTCY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS---GRIVWPVYS 233 (373)
T ss_pred EECC-----CEEE-EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCC---CEEEEECCC
T ss_conf 8245-----2069-996289919999947993999974774266788630036675304345887899---429992589
Q ss_pred CCEEEEECCCCCCCE--EEEECC----------CCCEEEEEEECCCCEEE----------EEECCCCEEEEE-CCCCEEE
Q ss_conf 939999868897316--999058----------99869999907999999----------996799099997-6992689
Q 000697 1250 GDIQFLDIRNHKDAY--LTIDAH----------RGSLSALAVHRHAPIIA----------SGSAKQLIKVFS-LEGEQLG 1306 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~i--~tl~~h----------~~~ItsLafspdg~~La----------sgS~Dg~I~Iwd-~~g~~l~ 1306 (1348)
+.+.+|+.... ... .....+ ......+++++++..++ ....++.+.+|| .+++.+.
T Consensus 234 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~ 312 (373)
T d2madh_ 234 GKILQADISAA-GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CEEEEEECCCC-EEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 65999976899-07897763056475786641367413357714997599954888247862589869999899996989
Q ss_pred EEECCCCCCCCCCCCCEEEEEEECCCC--EEEEEECCCEEEECC
Q ss_conf 994557864545667838999947997--999998898099929
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQV--LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~--~Latgs~Dg~I~IWd 1348 (1348)
.+.. . ..+.+++|+||++ ++++++.|+.|++||
T Consensus 313 ~~~~--~-------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 313 QISL--G-------HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EECC--C-------CCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 8668--9-------982589999899989999967999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=1.2e-13 Score=111.90 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=169.2
Q ss_pred CCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEEECCCCCC---CCEEEEEEEEECCCCEEEEEE---------
Q ss_conf 998289999589999999-9789949999879993888962799999---983799998608998999996---------
Q 000697 1035 EKGTKTALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPD---KGISKLCLVNELDVSLLLVAS--------- 1101 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Lat-gs~dg~I~IWd~~t~~~i~~l~~h~~~~---~~ItsI~f~ns~d~~~Lvtgs--------- 1101 (1348)
...+..++|+||++++++ +..++.|.+||+.+++.+..+....... ..+..+.| ++|+.++++++
T Consensus 39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDH 116 (346)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEE--ECCCCEEEEEECCCCCEEEE
T ss_conf 9970459997898999999789993999967567131231036543454774179999--05888899970577521565
Q ss_pred ---CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
Q ss_conf ---89829998345777850588501023578996212504899935999699998798299998778960355315999
Q 000697 1102 ---CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1102 ---~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~ 1178 (1348)
.++.+.+|+..+......+. .. .....+.. +.++ +++.+++.+ +.+.+|+..++. .+..+..+.
T Consensus 117 ~~~~~~~i~~~~~~~~~~~~~~~----~~-~~~~~~~~----~~~~-~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~ 183 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTADGLEAKPVR----TF-PMPRQVYL----MRAA-DDGSLYVAG--PDIYKMDVKTGK-YTVALPLRN 183 (346)
T ss_dssp EEECCCEEEEEEGGGGGGBCCSE----EE-ECCSSCCC----EEEC-TTSCEEEES--SSEEEECTTTCC-EEEEECSTT
T ss_pred ECCCCCEEEEEECCCCEEEEEEE----EE-ECCCCEEE----EEEC-CCCEEEEEC--CCCEEEECCCCC-EEEEEECCC
T ss_conf 14676248998525632656887----31-02474399----9952-787899847--962699806997-899996489
Q ss_pred CCCEEEE-------------------------EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 9981799-------------------------976499999999967980999988899702574157887887859999
Q 000697 1179 DCSISAL-------------------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1179 ~~~VtsL-------------------------~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~ 1233 (1348)
.. ..+ .........+.++..++.+.+||............ .+...+..+.
T Consensus 184 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 258 (346)
T d1jmxb_ 184 WN--RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---DLTELYFTGL 258 (346)
T ss_dssp CC--CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEE
T ss_pred CC--CCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCEEEEEE
T ss_conf 86--623771255289998649981676512311126732575404783499997778836878763---1566068889
Q ss_pred EECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE-CCCCEEEEEECCC
Q ss_conf 922999999999978993999986889731699905899869999907999999996799099997-6992689994557
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHH 1312 (1348)
Q Consensus 1234 ~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~~h 1312 (1348)
++++ +..++.+.. +.|.+||..++ +.+..+. +...+.+++|+|+|+.+++++.|+.|+||| .+++.+.+++. .
T Consensus 259 ~~~~--~~~~~~~~~-~~v~v~d~~~~-~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~-p 332 (346)
T d1jmxb_ 259 RSPK--DPNQIYGVL-NRLAKYDLKQR-KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL-P 332 (346)
T ss_dssp ECSS--CTTEEEEEE-SEEEEEETTTT-EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC-S
T ss_pred EECC--CCEEEEECC-CEEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-C
T ss_conf 7179--978999429-83899989999-3999974-999778999968999999994899299999965879799988-9
Q ss_pred C
Q ss_conf 8
Q 000697 1313 P 1313 (1348)
Q Consensus 1313 ~ 1313 (1348)
.
T Consensus 333 ~ 333 (346)
T d1jmxb_ 333 G 333 (346)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2.1e-12 Score=102.87 Aligned_cols=254 Identities=10% Similarity=0.152 Sum_probs=163.3
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 899828999958999999997-899499998799938889627999999837999986089989999968-982999834
Q 000697 1034 FEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs-~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~-DG~IrIWdl 1111 (1348)
+...+..++|+|||++|++++ .++.|++|++........+..+......+..++| ++|+++|++++. ++.|.+|+.
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST--DHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE--CTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEE--CCCCCEEEECCCCCCCEEEECC
T ss_conf 79988689995897999999778996999999689870798530136998549999--5999887420568883022001
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEE----EECCCCCCCEEEEE
Q ss_conf 5777850588501023578996212504899935999699998-798299998778960355----31599999817999
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN----PIPSSSDCSISALT 1186 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~----~l~~~~~~~VtsL~ 1186 (1348)
.. ...... .....+...+.+ +.+++++..+++++ .+..|.+|+......... ............+
T Consensus 113 ~~--~~~~~~---~~~~~~~~~~~~----v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i- 182 (333)
T d1ri6a_ 113 ED--GLPVGV---VDVVEGLDGCHS----ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM- 182 (333)
T ss_dssp ET--TEEEEE---EEEECCCTTBCC----CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE-
T ss_pred CC--CCCEEC---CCCCCCCCCCEE----EEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEE-
T ss_conf 11--000000---100377853149----88630101310256554205689732687410010001334038875279-
Q ss_pred EECCCCCEEEEE-ECCCEEEEEECCCCCEEEEE---EC---CCCCCCCCEEEEEEECCCCCCEEE-EEECCCCEEEEECC
Q ss_conf 764999999999-67980999988899702574---15---788788785999992299999999-99789939999868
Q 000697 1187 ASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCS---TR---PHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIR 1258 (1348)
Q Consensus 1187 ~~s~dg~~LvsG-s~DG~IrIwDlr~~~~~v~~---~~---~~~~h~~~I~si~~sp~~~g~~Lv-Sgs~DG~I~IWDlr 1258 (1348)
.+.+++..++.. ...+...+++.......... .. ...........++++++ +++++ .+..++.+.+|++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~~~~~~~~~~~~~~~~~~ 260 (333)
T d1ri6a_ 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD--GRHLYACDRTASLITVFSVS 260 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECC--CCCEEEECCCCCEEEEEEEC
T ss_conf 9960201478620466721788510355520210022343068776553126899515--67205504568827878873
Q ss_pred CCCCCEEE--EECCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECC
Q ss_conf 89731699--905899869999907999999996-79909999769
Q 000697 1259 NHKDAYLT--IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLE 1301 (1348)
Q Consensus 1259 ~~~~~i~t--l~~h~~~ItsLafspdg~~LasgS-~Dg~I~Iwd~~ 1301 (1348)
........ .......+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 261 EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 9997899999967899762899907989999998899939999997
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.5e-12 Score=104.01 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHCHHHH--HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 7323578874111457--78999999983179778999886075366687505782456669999999886059012225
Q 000697 461 EQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~r--lral~ll~~Fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~ 538 (1348)
|.+|++.++|.|+..+ ..|+-.|++...-++-.+...+..|+++.+++++++...+.+..++.+++.++.........
T Consensus 162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~ 241 (503)
T d1wa5b_ 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 241 (503)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 87478999855997158999999999985411899998874135563012045688899999999999984687420479
Q ss_pred HHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55236713464421688884677789999999995189112378984456999999531799999999889999999999
Q 000697 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1348)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~L 618 (1348)
....++..+++..+...+ ++.+..+|.+|+.++.+.+......++.+++..+..++. .+++.++..++.+|
T Consensus 242 ~~~~~~l~~l~~~l~~~d--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~v~~~al~~l 312 (503)
T d1wa5b_ 242 SVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-------HESTLVQTPALRAV 312 (503)
T ss_dssp HHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
T ss_conf 999999999998723563--899999999987532277111100112233111011025-------78636445677777
Q ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 97311554888841025804666321069997789999999974003476778899889988763899999999999996
Q 000697 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698 (1348)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 698 (1348)
+.+..+.+......++.++...+..++.++.+.||.+++.+|+.+.... ......-.+..+...++
T Consensus 313 ~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~--------------~~~~~~i~~~~~l~~li 378 (503)
T d1wa5b_ 313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN--------------TEQIQAVIDANLIPPLV 378 (503)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------------HHHHHHHHHCCCCCHHH
T ss_conf 7787788887876312340999999963997888999987788886146--------------98889999714652367
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 520679963399999999999973
Q 000697 699 TVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 699 ~~~~D~sp~VR~e~~~~l~~~~~~ 722 (1348)
.....+++.|+++++++++.+...
T Consensus 379 ~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 379 KLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 760268736899999999999736
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=4.4e-13 Score=107.92 Aligned_cols=250 Identities=9% Similarity=0.050 Sum_probs=155.5
Q ss_pred EEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCC----CCCEEEEEEEEECCCCEEEEEE--
Q ss_conf 28999958999999997----------8994999987999388896279999----9983799998608998999996--
Q 000697 1038 TKTALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS-- 1101 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs----------~dg~I~IWd~~t~~~i~~l~~h~~~----~~~ItsI~f~ns~d~~~Lvtgs-- 1101 (1348)
...++|+||+++|++++ .++.|++||..+++.+..+..+... +.....+.| ++++..++++.
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFS 126 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECS
T ss_pred CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEE--ECCCCEEEEECCC
T ss_conf 98569948999999996777642015899989999999997988980588640311798734999--3388715773279
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC---CCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCC
Q ss_conf 8982999834577785058850102357899621---2504899935999699998-79829999877896035531599
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR---CSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS 1177 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~---s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~ 1177 (1348)
.+..+.+|+..+ ++ .+. .+........ .....+.+++++..+++.. .++.+.+++..... . .
T Consensus 127 ~~~~~~~~~~~~--~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-~------~ 192 (355)
T d2bbkh_ 127 PAPAVGVVDLEG--KA--FKR---MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-P------E 192 (355)
T ss_dssp SSCEEEEEETTT--TE--EEE---EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-C------T
T ss_pred CCCEEEEEECCC--CC--EEE---EEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC-C------E
T ss_conf 882045430578--83--766---77058740473069963699938999899983478737999624333-0------0
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC----------CCCEEEEEEECCCCCCEEEEEE
Q ss_conf 999817999764999999999679809999888997025741578878----------8785999992299999999997
Q 000697 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ----------VERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h----------~~~I~si~~sp~~~g~~LvSgs 1247 (1348)
....+... ....++..++.++.+|.+++|+...+...... ....+ ......+.++++ +..++...
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~d--~~~~~~~~ 267 (355)
T d2bbkh_ 193 DEFLINHP-AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP--AVEALTEAERADGWRPGGWQQVAYHRA--LDRIYLLV 267 (355)
T ss_dssp TSCBCSCC-EEETTTTEEEEEBTTSEEEEEECTTSSCEECC--CEESSCHHHHHTTEEECSSSCEEEETT--TTEEEEEE
T ss_pred ECCEEEEC-CCCCCCCEEEEECCCCEEEEEECCCCCEEEEE--CCCCCCCCEEEEEEECCCEEEEEEECC--CCEEEEEE
T ss_conf 01106102-15389973887469982999965899079984--457844126854330351089998079--97678874
Q ss_pred CC----------CCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCC--EEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 89----------93999986889731699905899869999907999--999996799099997-69926899945
Q 000697 1248 QA----------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1248 ~D----------G~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~--~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
.+ ..|.+||..++ +.+.++.. ...+.+++|+|+|+ ++++++.|+.|.||| .+++.+.++..
T Consensus 268 ~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 268 DQRDEWRHKTASRFVVVLDAKTG-ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EECCTTCTTSCEEEEEEEETTTC-CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CCCCCEEECCCCCEEEEEECCCC-CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 06871265179975999867888-49899668-9987799992899969999978999899999999989999928
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=3.1e-11 Score=94.32 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHCHH-HHH--HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 73235788741114-577--899999998317977899988607536668750578245666999999988605901222
Q 000697 461 EQLPIVLQVLLSQC-HRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~-~rl--ral~ll~~Fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~ 537 (1348)
|.+|.++++|.+.. .++ .|...|+.+-...+..+...+..|+.|.++++|+++..+.+..++.+++.|+..++.++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999874699889999999999998639855104766446315666403568799999999999988500168999
Q ss_pred HHHHCCCHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 555236713464421688884---67778999999999518911237898445699999953179999999988999999
Q 000697 538 DLVKDGGHAYFIRFLDSMEAY---PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 614 (1348)
Q Consensus 538 ~l~k~~~~~yf~~~L~~~~~~---~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~ 614 (1348)
.+...+++..++..|...... .....-++.+++.++.+....+......+++..+..++. +++++++..+
T Consensus 136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~-------~~~~~~~~~a 208 (434)
T d1q1sc_ 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------HNDPEVLADS 208 (434)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT-------CSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCHHHHH
T ss_conf 999863005899998722321001899999999998886426422114436569999999985-------2442012567
Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999731155488884102580466632106999778999999997400
Q 000697 615 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 615 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i 664 (1348)
+.+|+.+....++........++...+..++.++.++++.+++-+|+.+.
T Consensus 209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~ 258 (434)
T d1q1sc_ 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 258 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf 76640220123456777763154201000023430655402122135677
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=2e-11 Score=95.81 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHHCH---HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Q ss_conf 9006986743687722798888999-------7323578874111---45778999999983179778999886075366
Q 000697 436 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ---CHRFRALVLLGRFLDMGPWAVDLALSVGIFPY 505 (1348)
Q Consensus 436 ~~ff~~qLtafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~---~~rlral~ll~~Fld~g~wAv~lal~~gifpy 505 (1348)
+.-.+.|+.|...+-+.-+....+| |.+|.++++|++. .-+..|+.+|+......+.-+......|+.|+
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 166 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 166 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
T ss_conf 99999999999999999740788439999987984999998717999999999999999997498887799996787478
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68750578245666999999988605901222555236713464421688884677789999999995189112378984
Q 000697 506 VLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIE 585 (1348)
Q Consensus 506 vlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~ 585 (1348)
++.+|+++..+.+..++..++.|...++.++..++..+++..++..+..... ..+.-++.+|+.++.+..........
T Consensus 167 l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~~~~~~~ 244 (503)
T d1wa5b_ 167 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQPDWSVV 244 (503)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCH--HHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9998559971589999999999854118999988741355630120456888--99999999999984687420479999
Q ss_pred HCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 45699999953179999999988999999999997311554888841025804666321069997789999999974003
Q 000697 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~ 665 (1348)
.+++..+..++. ..+++++..+|.+|+.+....++.....++.++...+..++.++++.|+..++.+|+.+..
T Consensus 245 ~~~l~~l~~~l~-------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 245 SQALPTLAKLIY-------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp GGGHHHHHHHTT-------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998723-------5638999999999875322771111001122331110110257863644567777777877
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 476778899889988763899999999999996520679963399999999999973
Q 000697 666 IGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~ 722 (1348)
. .+.......+..+...+..+..++.+.+|++++++++.+...
T Consensus 318 ~--------------~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~ 360 (503)
T d1wa5b_ 318 G--------------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 360 (503)
T ss_dssp S--------------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred H--------------HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8--------------888787631234099999996399788899998778888614
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-12 Score=104.96 Aligned_cols=187 Identities=17% Similarity=0.129 Sum_probs=168.6
Q ss_pred HHCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Q ss_conf 41114577899999998317977899988607536668-75057824566699999998860590122255523671346
Q 000697 470 LLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVL-KLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1348)
Q Consensus 470 LlS~~~rlral~ll~~Fld~g~wAv~lal~~gifpyvl-klL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf 548 (1348)
--++..+..|+..|..+++-..+|+.+. ..|+++.++ .+|.++..+.|..++.+++.++...+.+|..+++.+++..+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHH-HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7999999999999999976978899999-869999999998379999999999999999998888888999972763799
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 44216888846777899999999951891123789844569999995317999999998899999999999731155488
Q 000697 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1348)
Q Consensus 549 ~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~ 628 (1348)
++.|+.... ++.|.-+++.|+.++.+++.++......+.+..+..+|. ++++.++.+++.+|+.|+...++.
T Consensus 107 v~lL~~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~-------~~~~~~~~~a~~~L~~l~~~~~~~ 178 (264)
T d1xqra1 107 LRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-------QQVQKLKVKSAFLLQNLLVGHPEH 178 (264)
T ss_dssp HHHHHHCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-------SSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999604998-999999999999874244026789987201268899880-------586578899999999987445778
Q ss_pred HHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8841025804666321069997789999999974003
Q 000697 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 629 ~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~ 665 (1348)
+....+.++...+..++.+++++||..++.+|+.+..
T Consensus 179 ~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888876468999999739998999999999999986
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=1.5e-10 Score=89.38 Aligned_cols=245 Identities=9% Similarity=0.034 Sum_probs=124.0
Q ss_pred EEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCC----CCCEEEEEEEEECCCCEEEEEE-CCC
Q ss_conf 999958999999997----------8994999987999388896279999----9983799998608998999996-898
Q 000697 1040 TALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS-CNG 1104 (1348)
Q Consensus 1040 sl~fspdg~~Latgs----------~dg~I~IWd~~t~~~i~~l~~h~~~----~~~ItsI~f~ns~d~~~Lvtgs-~DG 1104 (1348)
.++|+|++..+++++ .++.|.+||..+++.+..+..+... +.....+.| ++|+++++++. .++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~--SpDGk~l~va~~~~~ 146 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN--CASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE--CTTSSCEEEEECSSS
T ss_pred CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEE--CCCCCEEEEEECCCC
T ss_conf 513989998899975567640103567869999899993830643785421024688640588--789989999968998
Q ss_pred EEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC-----CCC
Q ss_conf 299983457778505885010235789962125048999359996999987982999987789603553159-----999
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-----SSD 1179 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~-----~~~ 1179 (1348)
.+.+||..+ ++.... +..+.... +.. .....+++.+.||.+.+++..... ....... ...
T Consensus 147 ~v~~~d~~~--~~~~~~-----~~~~~~~~------~~~-~~~~~~v~~~~Dg~~~~~~~~~~~-~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 147 AAAGLSVPG--ASDDQL-----TKSASCFH------IHP-GAAATHYLGSCPASLAASDLAAAP-AAAGIVGAQCTGAQN 211 (368)
T ss_dssp CEEEEEETT--TEEEEE-----EECSSCCC------CEE-EETTEEECCCCTTSCEEEECCSSC-CCCEECCCCSCTTSC
T ss_pred EEEEEECCC--CCEEEE-----EECCCCCE------ECC-CCCCEEEEECCCCCEEEEEECCCC-EEEEEEECCCCCCCC
T ss_conf 599998998--938678-----60467523------746-998239999489988999826896-266653031113566
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC----------CCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 9817999764999999999679809999888997025741578878----------878599999229999999999789
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ----------VERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h----------~~~I~si~~sp~~~g~~LvSgs~D 1249 (1348)
..+... ....++..+. ..++.+.+++.......... ....+ ......++++++ +..++....+
T Consensus 212 ~~~~~~-~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~a~~~~--~~~~~v~~~~ 284 (368)
T d1mdah_ 212 CSSQAA-QANYPGMLVW--AVASSILQGDIPAAGATMKA--AIDGNESGRKADNFRSAGFQMVAKLKN--TDGIMILTVE 284 (368)
T ss_dssp BCSCCE-EETTTTEEEE--CBSSCCEEEECCSSCCEEEC--CCCSSCTHHHHTTEEECSSSCEEEETT--TTEEEEEEEE
T ss_pred CCEEEC-CCCCCCEEEE--ECCCCEEEEEECCCCEEEEE--ECCCCCCEEEEEEECCCCCEEEEECCC--CCEEEEEECC
T ss_conf 646601-0155868999--34897799960699369976--024654304554012788356887179--9879998358
Q ss_pred ---------CCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCC--EEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf ---------93999986889731699905899869999907999--999996799099997-69926899945
Q 000697 1250 ---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1250 ---------G~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~--~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
..|.+||..++ +.+.++.. ...+.+++|+|+++ +++++..++.|++|| .+++.+.++..
T Consensus 285 ~~~~~~~~~~~v~v~D~~t~-~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 285 HSRSCLAAAENTSSVTASVG-QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC-CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCEEECCCCEEEEEECCCC-CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 97334058864999989999-48689558-9965179999899989999948999699998999979999879
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.32 E-value=7e-09 Score=77.11 Aligned_cols=284 Identities=8% Similarity=0.027 Sum_probs=145.1
Q ss_pred CCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC
Q ss_conf 8998289999589999999978---------9949999879993888962799999983799998608998999996898
Q 000697 1034 FEKGTKTALLQPFSPIVVAADE---------NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~---------dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG 1104 (1348)
+...|.+..|+||+++|+.++. ++.+.|||+++++ +..+..+. ..+..+.| +|||..++... ++
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~---~~~~~~~~--SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP---NNTQWVTW--SPVGHKLAYVW-NN 132 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC---TTEEEEEE--CSSTTCEEEEE-TT
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCC---CCCCCCCC--CCCCCEEEEEE-CC
T ss_conf 16765405998988979999777100010467349999898885-13124687---42310101--46764135751-46
Q ss_pred EEEEEECCCCCCCEEEEEEEEC----CCC---------CCCCCCCCCEEEEEECCCCEEEEEECC-CEEEEEECC---CC
Q ss_conf 2999834577785058850102----357---------899621250489993599969999879-829999877---89
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSS----IQG---------HKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLE---KE 1167 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~----l~~---------h~~~V~s~~~~v~ws~~~~~Llsgg~D-g~I~IWDl~---t~ 1167 (1348)
.+.+|+... +.......... +.+ ....... +.|+|++..++....| ..+..|++. ..
T Consensus 133 ~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~----~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~ 206 (470)
T d2bgra1 133 DIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA----LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (470)
T ss_dssp EEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC----EEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred CCEEEECCC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC----CEECCCCCCCCEEEECCCCCCEEEEEEECCC
T ss_conf 413798899--9465321014777405354320112100477653----0799998722026863776706998766047
Q ss_pred C---EEEEEE-------------------CC-------------------CCCCCEEEEEEECCCCCEEEEEE-CCC---
Q ss_conf 6---035531-------------------59-------------------99998179997649999999996-798---
Q 000697 1168 Q---QMVNPI-------------------PS-------------------SSDCSISALTASQVHGGQLAAGF-VDG--- 1202 (1348)
Q Consensus 1168 ~---~~i~~l-------------------~~-------------------~~~~~VtsL~~~s~dg~~LvsGs-~DG--- 1202 (1348)
. .....+ .. ..+..+..+ .+..++..++... ..+
T Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~r~~~~~ 285 (470)
T d2bgra1 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV-TWATQERISLQWLRRIQNYS 285 (470)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEE-EEEETTEEEEEEEESSTTEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEE-EECCCCCEEEEEEECCCCCE
T ss_conf 77887135403665454688625799998886145520332247863347898667788-87687833478730468815
Q ss_pred E--EEEEECCCCCEEEEEEC------CC----CCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECC
Q ss_conf 0--99998889970257415------78----878878599999229999999999789939999868897316999058
Q 000697 1203 S--VRLYDVRTPDMLVCSTR------PH----TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1203 ~--IrIwDlr~~~~~v~~~~------~~----~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~~h 1270 (1348)
. +..+|..++. ...... .. ..+.. ....+.++.++..+.....+|...+|.....+.....+..+
T Consensus 286 ~~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g 362 (470)
T d2bgra1 286 VMDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRP--SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG 362 (470)
T ss_dssp EEEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSC--CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCS
T ss_pred EEEEEEECCCCCC-EEEEEEEEEEEEECCCEEECCCC--CCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCC
T ss_conf 9999996188894-78999875146621433531357--77245423788479874367576459995268730451169
Q ss_pred CCCEEEEEEECCCC-EEEEEECCC----CEEEEE--CCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99869999907999-999996799----099997--699-2689994557864545667838999947997999998
Q 000697 1271 RGSLSALAVHRHAP-IIASGSAKQ----LIKVFS--LEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1271 ~~~ItsLafspdg~-~LasgS~Dg----~I~Iwd--~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
...+..+ ++.++. ++++++.++ .-.+|. +.+ .....+.. -...+...+.+++|+|++++++...
T Consensus 363 ~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~----~~~~~~~~~~s~~fSpdgky~~~~~ 434 (470)
T d2bgra1 363 TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC----ELNPERCQYYSVSFSKEAKYYQLRC 434 (470)
T ss_dssp SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST----TTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECC----CCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 8048787-8977999999995689983517999998889986057035----4358889879999998999999983
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.6e-09 Score=80.27 Aligned_cols=242 Identities=18% Similarity=0.234 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHCHHHHH--HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHH-----HHHHHHHHHHHHCCCH
Q ss_conf 73235788741114577--8999999983179778999886075366687505782456-----6699999998860590
Q 000697 461 EQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPEL-----RQILVFIWTKILALDK 533 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rl--ral~ll~~Fld~g~wAv~lal~~gifpyvlklL~s~~~el-----r~~~~FIwa~il~~~~ 533 (1348)
+.+|.++++|.++...+ .|+..|++...-++-.+......|+++.++++|.....+. ...+++.++.++....
T Consensus 99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (434)
T d1q1sc_ 99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178 (434)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 63156664035687999999999999885001689999998630058999987223210018999999999988864264
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 12225552367134644216888846777899999999951891123789844569999995317999999998899999
Q 000697 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1348)
Q Consensus 534 ~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w 613 (1348)
..+......++...+...+...+ ++.+..++.+|+.+..+.+.........+++..+..++. +++++++..
T Consensus 179 ~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-------~~~~~~~~~ 249 (434)
T d1q1sc_ 179 PAPPLDAVEQILPTLVRLLHHND--PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-------ATELPIVTP 249 (434)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-------CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCC-------CCHHHHHHC
T ss_conf 22114436569999999985244--201256776640220123456777763154201000023-------430655402
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999973115548888410258046663210699977899999999740034767788998899887638999999999
Q 000697 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1348)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1348)
++-+|+.+..+.++.+...++.++...+..+++++.++||..++.+|+.+.... ......-.+..+
T Consensus 250 al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~i~~~~~ 315 (434)
T d1q1sc_ 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--------------QDQIQQVVNHGL 315 (434)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCC--------------CHHHHHHHHHHH
T ss_conf 122135677666677899985256405777613641466688887886520045--------------045777766546
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99996520679963399999999999973040
Q 000697 694 IRSLLTVVSDGSPLVRAEVAVALARFAFGHKQ 725 (1348)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~l~~~~~~~~~ 725 (1348)
...++.+..++++.||.+++.++..+......
T Consensus 316 i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~ 347 (434)
T d1q1sc_ 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 347 (434)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 89999877515868899999999999834999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=1.4e-09 Score=82.21 Aligned_cols=277 Identities=11% Similarity=-0.075 Sum_probs=172.3
Q ss_pred CCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE---------
Q ss_conf 98289999589999999---97899--49999879993888962799999983799998608998999996---------
Q 000697 1036 KGTKTALLQPFSPIVVA---ADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS--------- 1101 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Lat---gs~dg--~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs--------- 1101 (1348)
.....++..++++.... ...++ .+.+||..+++.+..+..+. .. .+.| ++|++.+++.+
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~--spDg~~i~~~~~~~~~~~~g 92 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVA--GHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEE--CTTSSCEEEEEEEETTTTSS
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC---CC--CCEE--CCCCCEEEEECCCCCCCCCC
T ss_conf 98666455898761269720457886217997089983778885787---77--5139--89998899975567640103
Q ss_pred -CCCEEEEEECCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEE
Q ss_conf -8982999834577785058850102357-----8996212504899935999699998-79829999877896035531
Q 000697 1102 -CNGNIRIWKDYDQKDKQKLVTAFSSIQG-----HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1102 -~DG~IrIWdl~~~~~~~~lvs~~~~l~~-----h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l 1174 (1348)
.|+.|++||..+ ++.... .. +.. ....... +.|++++.+++++. .++.+.+||+.+.+ .+..+
T Consensus 93 ~~d~~v~v~D~~t--~~~~~~--i~-~p~~~~~~~g~~p~~----~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~ 162 (368)
T d1mdah_ 93 KRTDYVEVFDPVT--FLPIAD--IE-LPDAPRFSVGPRVHI----IGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLT 162 (368)
T ss_dssp SEEEEEEEECTTT--CCEEEE--EE-ETTSCSCCBSCCTTS----EEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEE
T ss_pred CCCCEEEEEECCC--CCEEEE--EC-CCCCCEECCCCCCCC----EEECCCCCEEEEEECCCCEEEEEECCCCC-EEEEE
T ss_conf 5678699998999--938306--43-785421024688640----58878998999996899859999899893-86786
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 599999817999764999999999679809999888997025741--578878878599999229999999999789939
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST--RPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1252 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~--~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I 1252 (1348)
..+....+. +.....+++.+.||.+.+++........... .....+...+....+.++ +..+.+ .++.+
T Consensus 163 ~~~~~~~~~-----~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~v 233 (368)
T d1mdah_ 163 KSASCFHIH-----PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP--GMLVWA--VASSI 233 (368)
T ss_dssp ECSSCCCCE-----EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT--TEEEEC--BSSCC
T ss_pred ECCCCCEEC-----CCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCC--CEEEEE--CCCCE
T ss_conf 046752374-----699823999948998899982689626665303111356664660101558--689993--48977
Q ss_pred EEEECCCCCCCEEEEE--CC----------CCCEEEEEEECCCCEEEEEECC---------CCEEEEE-CCCCEEEEEEC
Q ss_conf 9998688973169990--58----------9986999990799999999679---------9099997-69926899945
Q 000697 1253 QFLDIRNHKDAYLTID--AH----------RGSLSALAVHRHAPIIASGSAK---------QLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1253 ~IWDlr~~~~~i~tl~--~h----------~~~ItsLafspdg~~LasgS~D---------g~I~Iwd-~~g~~l~~i~~ 1310 (1348)
.+++.... ....... .+ ......+++++++..++....+ ..|.+|| .+++.+..+..
T Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~ 312 (368)
T d1mdah_ 234 LQGDIPAA-GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp EEEECCSS-CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCC-CEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 99960699-36997602465430455401278835688717998799983589733405886499998999948689558
Q ss_pred CCCCCCCCCCCCEEEEEEECCCC-E-EEEEECCCEEEECC
Q ss_conf 57864545667838999947997-9-99998898099929
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQV-L-LAAGSADACVSIHS 1348 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~-~-Latgs~Dg~I~IWd 1348 (1348)
...+.+++|+||++ + ++++..|+.|.+||
T Consensus 313 ---------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 313 ---------GHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ---------EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf ---------9965179999899989999948999699998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.13 E-value=7.2e-09 Score=77.01 Aligned_cols=280 Identities=6% Similarity=-0.089 Sum_probs=145.9
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCC--EEEEEECCCE-
Q ss_conf 1367899828999958999999997-89949999879993888962799999983799998608998--9999968982-
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--LLLVASCNGN- 1105 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs-~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~--~Lvtgs~DG~- 1105 (1348)
|...|.-......++|||++|++.+ .++.|.++|+++.+....+.... +..+..+.| +++++ +++..+.+..
T Consensus 66 ~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~--spdg~t~YV~~~~~~~v~ 141 (441)
T d1qnia2 66 NGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN--VQAIHGLRL--QKVPKTNYVFCNAEFVIP 141 (441)
T ss_dssp CCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT--CCCEEEEEE--CCSSBCCEEEEEECSCEE
T ss_pred CCCCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCCEEE--ECCCCEEEEEECCCCCCC
T ss_conf 6755677722103268888899973899979999887784755795678--878643487--056998999956677544
Q ss_pred ----------------EEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-EEEEEECCCCC
Q ss_conf ----------------9998345777850588501023578996212504899935999699998798-29999877896
Q 000697 1106 ----------------IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEKEQ 1168 (1348)
Q Consensus 1106 ----------------IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg-~I~IWDl~t~~ 1168 (1348)
+..+|..+ .+.. ++... ...... +.++++++.+++++.+. .+..++..+..
T Consensus 142 ~~~dg~~~~~~~~~~~~~~iD~~t----~~v~--~qI~v--~~~p~~----v~~spdGk~a~vt~~nse~~~~id~~t~~ 209 (441)
T d1qnia2 142 QPNDGTDFSLDNSYTMFTAIDAET----MDVA--WQVIV--DGNLDN----TDADYTGKYATSTCYNSERAVDLAGTMRN 209 (441)
T ss_dssp SSCSSSCCCGGGEEEEEEEEETTT----CSEE--EEEEE--SSCCCC----EEECSSSSEEEEEESCTTCCSSHHHHTCS
T ss_pred CCCCCCCCCCCCCCCEEEEECCCC----CEEE--EEEEC--CCCCCC----EEECCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 367663001455532388663755----6064--78736--998654----69879999899985178731898515712
Q ss_pred EEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEE-EEEE
Q ss_conf 035531599999817999764999999999679809999888997025741578878878599999229999999-9997
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI-VSAS 1247 (1348)
Q Consensus 1169 ~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~L-vSgs 1247 (1348)
....+.... . -..+ ...++|+++.. +.++.+.+++....+ ....+... .....+.++|+ |+++ +++.
T Consensus 210 -~~d~i~v~n-~-p~~~-~~~~dGk~~~v-~~~~v~vvd~~~~~~-v~~~IPvg----ksPhGv~vSPD--Gkyl~~~~~ 277 (441)
T d1qnia2 210 -DRDWVVVFN-V-ERIA-AAVKAGNFKTI-GDSKVPVVDGRGESE-FTRYIPVP----KNPHGLNTSPD--GKYFIANGK 277 (441)
T ss_dssp -SBCEEEEEE-H-HHHH-HHHHTTCCBCC-TTCCCCEEECSSSCS-SEEEECCB----SSCCCEEECTT--SCEEEEECT
T ss_pred -EEEEEEECC-C-CCEE-EEECCCCEEEE-CCCCCEEEECCCCCC-EEEEEECC----CCCCCCEECCC--CCEEEEECC
T ss_conf -178999688-5-1107-99669999996-999828998036870-68997179----88667268999--878999077
Q ss_pred CCCCEEEEECCCCC----------CCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-----------CCEEE
Q ss_conf 89939999868897----------3169990589986999990799999999679909999769-----------92689
Q 000697 1248 QAGDIQFLDIRNHK----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-----------GEQLG 1306 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~----------~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~-----------g~~l~ 1306 (1348)
.+++|.+||+.+.. ..+.-.....-.....+|.++|..+.+...|..|..|++. ...+.
T Consensus 278 ~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~ 357 (441)
T d1qnia2 278 LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQ 357 (441)
T ss_dssp TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEE
T ss_pred CCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEE
T ss_conf 59938999832244575256884247996014554766522657855998524431689723542213322677765686
Q ss_pred EEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 9945578645456678389999479979999988
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.+.. | +..+|...+.+.+++|+|++|++++.
T Consensus 358 ~~~v-~--y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 358 KLDV-Q--YQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEC-S--SCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCC-C--CCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 4532-6--68987752454223898848996574
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.09 E-value=2.1e-07 Score=66.30 Aligned_cols=265 Identities=10% Similarity=-0.016 Sum_probs=131.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---------------CCCCEEEEEEEEECCCCEEE
Q ss_conf 899828999958999999997899499998799938889627999---------------99983799998608998999
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF---------------PDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~---------------~~~~ItsI~f~ns~d~~~Lv 1098 (1348)
+...+....|+|||+.+|... ++.+.+|+..+++.......+.. ..+....+.| +||+..|+
T Consensus 110 ~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia 186 (470)
T d2bgra1 110 IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLA 186 (470)
T ss_dssp CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEE--CCCCCCCC
T ss_conf 874231010146764135751-464137988999465321014777405354320112100477653079--99987220
Q ss_pred EEECCCE-EEEEECCC---C-CCCEEEEE----------------EEECCCCCCCCC---------------CCCCEEEE
Q ss_conf 9968982-99983457---7-78505885----------------010235789962---------------12504899
Q 000697 1099 VASCNGN-IRIWKDYD---Q-KDKQKLVT----------------AFSSIQGHKPGV---------------RCSNVVVD 1142 (1348)
Q Consensus 1099 tgs~DG~-IrIWdl~~---~-~~~~~lvs----------------~~~~l~~h~~~V---------------~s~~~~v~ 1142 (1348)
....|.. +..|.+.. . ........ -+....+....+ ......+.
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
T d2bgra1 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT 266 (470)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 26863776706998766047778871354036654546886257999988861455203322478633478986677888
Q ss_pred EECCCCEEEEEE-CC---CEEEEE--ECCCCCEEEEEEC-------------CCCCCCEEEEEEECCCCCEEEEEECCCE
Q ss_conf 935999699998-79---829999--8778960355315-------------9999981799976499999999967980
Q 000697 1143 WQQQSGYLYASG-EV---SSIMLW--DLEKEQQMVNPIP-------------SSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1348)
Q Consensus 1143 ws~~~~~Llsgg-~D---g~I~IW--Dl~t~~~~i~~l~-------------~~~~~~VtsL~~~s~dg~~LvsGs~DG~ 1203 (1348)
|..++..++... .. ..+.++ |..++. ...... .+... .... ....++..++....||.
T Consensus 267 w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~s~~dg~ 343 (470)
T d2bgra1 267 WATQERISLQWLRRIQNYSVMDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRPS-EPHF-TLDGNSFYKIISNEEGY 343 (470)
T ss_dssp EEETTEEEEEEEESSTTEEEEEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSCC-CCEE-CTTSSEEEEEEECTTSC
T ss_pred ECCCCCEEEEEEECCCCCEEEEEEEECCCCCC-EEEEEEEEEEEEECCCEEECCCCC-CCEE-EECCCCCEEEEECCCCC
T ss_conf 76878334787304688159999996188894-789998751466214335313577-7245-42378847987436757
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCC----CEEEEEC--CCCCCCEEEE----ECCCCC
Q ss_conf 99998889970257415788788785999992299999999997899----3999986--8897316999----058998
Q 000697 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG----DIQFLDI--RNHKDAYLTI----DAHRGS 1273 (1348)
Q Consensus 1204 IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG----~I~IWDl--r~~~~~i~tl----~~h~~~ 1273 (1348)
.++|...........+ + .+...|..+ +..+ +...++++..++ .-.+|.+ ... .....+ ..|...
T Consensus 344 ~~ly~~~~~g~~~~~l-t--~g~~~v~~~-~~~d-~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~ 417 (470)
T d2bgra1 344 RHICYFQIDKKDCTFI-T--KGTWEVIGI-EALT-SDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQ 417 (470)
T ss_dssp EEEEEEETTCSCCEES-C--CSSSCEEEE-EEEC-SSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBC
T ss_pred CEEEEEECCCCCEEEE-C--CCCEEEEEE-EEEC-CCEEEEEEECCCCCCCEEEEEEEECCCC-CCEEEECCCCCCCCCC
T ss_conf 6459995268730451-1--698048787-8977-9999999956899835179999988899-8605703543588898
Q ss_pred EEEEEEECCCCEEEE---EECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 699999079999999---96799099997-69926899945
Q 000697 1274 LSALAVHRHAPIIAS---GSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1274 ItsLafspdg~~Las---gS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
+.+++|+|+|++++. |...-.+.+|+ .+++.+..+..
T Consensus 418 ~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 418 YYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp BEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 79999998999999983289998199999899989999806
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-08 Score=73.17 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=151.9
Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 505782456669999999886059012225552367134644-2168888467778999999999518911237898445
Q 000697 509 LLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIR-FLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAG 587 (1348)
Q Consensus 509 lL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~-~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~ 587 (1348)
..++...|.|.-+.=.++.++.. .....++.+-||+...+. .|.+++ ++.|.-++.+|+.++.+.+..|......+
T Consensus 25 ~~~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~--~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 101 (264)
T d1xqra1 25 AEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQNVAAIQEQVLGLG 101 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65079999999999999999769-7889999986999999999837999--99999999999999988888889999727
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 69999995317999999998899999999999731155488884102580466632106999778999999997400347
Q 000697 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 588 ~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~~ 667 (1348)
++..++.+|.. ++++++|.-++.+|+.+..+++..+...+..+....+..++.++++.|+..++.+|+.+....
T Consensus 102 ~i~~Lv~lL~~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 175 (264)
T d1xqra1 102 ALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 175 (264)
T ss_dssp HHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 63799999604------998999999999999874244026789987201268899880586578899999999987445
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 677889988998876389999999999999652067996339999999999997304
Q 000697 668 FDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 724 (1348)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~~~ 724 (1348)
.+......+.+....++.++.++++.||..++.++..+.....
T Consensus 176 --------------~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~ 218 (264)
T d1xqra1 176 --------------PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 218 (264)
T ss_dssp --------------GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf --------------7788888876468999999739998999999999999986488
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.3e-07 Score=67.72 Aligned_cols=235 Identities=12% Similarity=0.127 Sum_probs=163.6
Q ss_pred CCCHHHHHHHHHCHH---HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 973235788741114---57789999999831797789998860753666875057824566699999998860590122
Q 000697 460 PEQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1348)
Q Consensus 460 p~~lP~vLq~LlS~~---~rlral~ll~~Fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q 536 (1348)
++..|.++++|..+. -+..|...|..+ -.++..+...+..|+.|-++++|.++..+.+..++..+..++...+.++
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 339999999984799999999999999999-5891669999987989999998579798999999999998651320113
Q ss_pred HHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 25552367134644216888846777899999999951891123789844569999995317999999998899999999
Q 000697 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1348)
Q Consensus 537 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l 616 (1348)
......+++...+..|...+ ++.+..++.+|..+..+....+......+.+..+..++.. .+.+.++..++-
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~~~~~ 208 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT------YTYEKLLWTTSR 208 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHH
T ss_conf 67876588148999887057--6888888999988763004788888760563689999986------104899999999
Q ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99973115548888410258046663210699977899999999740034767788998899887638999999999999
Q 000697 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 696 (1348)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 696 (1348)
+|+.+..+ ++.+...++.++...+..++.++++.++..++.+|..+-..... . .. .......
T Consensus 209 ~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~----------~-~~------~~~~i~~ 270 (529)
T d1jdha_ 209 VLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----------Q-EG------MEGLLGT 270 (529)
T ss_dssp HHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT----------C-SC------CHHHHHH
T ss_pred HHHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----------H-HH------HHHCCHH
T ss_conf 87511013-32330456543334699986254015553015677750432110----------2-56------6401014
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9652067996339999999999997
Q 000697 697 LLTVVSDGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 697 ll~~~~D~sp~VR~e~~~~l~~~~~ 721 (1348)
|+.+..+..+.++..++.++..+..
T Consensus 271 Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 271 LVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4541245428899999998875012
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.9e-07 Score=65.28 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=171.1
Q ss_pred CCHHHHHHHHHCH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 7323578874111--4577899999998317977899988607536668750578-245666999999988605901222
Q 000697 461 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQV 537 (1348)
Q Consensus 461 ~~lP~vLq~LlS~--~~rlral~ll~~Fld~g~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FIwa~il~~~~~~q~ 537 (1348)
.-.|-+.++|.+. .-+.+|...|+++....+.........|+.+.++++|..+ ..+.+..++-++..+.. +..++.
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 95 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLL 95 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCHHHH
T ss_conf 7999999987299999999999999999845577899987133999999998479999999999999999958-916699
Q ss_pred HHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 55523671346442168888467778999999999518911237898445699999953179999999988999999999
Q 000697 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1348)
Q Consensus 538 ~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~ 617 (1348)
..++.++....+..|.+++ +..+..++-.|+.++.+.+..|......+++..+..+|+ +++++++..++.+
T Consensus 96 ~i~~~g~i~~Li~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~ 166 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDC 166 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-------CCCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-------CCCHHHHHHHHHH
T ss_conf 9998798999999857979--899999999999865132011367876588148999887-------0576888888999
Q ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99731155488884102580466632106-99977899999999740034767788998899887638999999999999
Q 000697 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 696 (1348)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 696 (1348)
|+.+..+.++.+....+.+....+..++. ...+.++..++-++..+... ++....-.+......
T Consensus 167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~---------------~~~~~~~~~~g~~~~ 231 (529)
T d1jdha_ 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---------------SSNKPAIVEAGGMQA 231 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---------------TTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHH
T ss_conf 98876300478888876056368999998610489999999987511013---------------323304565433346
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9652067996339999999999997
Q 000697 697 LLTVVSDGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 697 ll~~~~D~sp~VR~e~~~~l~~~~~ 721 (1348)
+..+..++++.++..++..+..+..
T Consensus 232 L~~ll~~~~~~~~~~a~~~l~~ls~ 256 (529)
T d1jdha_ 232 LGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9998625401555301567775043
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.00 E-value=2e-07 Score=66.38 Aligned_cols=255 Identities=9% Similarity=0.032 Sum_probs=155.5
Q ss_pred CCCCCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 367899828999958999--999997899-----------------4999987999388896279999998379999860
Q 000697 1031 DTRFEKGTKTALLQPFSP--IVVAADENE-----------------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1091 (1348)
Q Consensus 1031 d~~~~~~I~sl~fspdg~--~Latgs~dg-----------------~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns 1091 (1348)
...+...+..++|+|+++ +++..+++. .+..+|.++.+....+.... ....+.| +
T Consensus 111 ~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~----~p~~v~~--s 184 (441)
T d1qnia2 111 HIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG----NLDNTDA--D 184 (441)
T ss_dssp ECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS----CCCCEEE--C
T ss_pred ECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCC----CCCCEEE--C
T ss_conf 567887864348705699899995667754436766300145553238866375560647873699----8654698--7
Q ss_pred CCCCEEEEEECCC-EEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 8998999996898-299983457778505885010235789962125048999359996999987982999987789603
Q 000697 1092 LDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1092 ~d~~~Lvtgs~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~ 1170 (1348)
++++++++.+.+. .+..++..+. .....+. ... .-.. ..+.++++++.+ +.++.+.+++..... .
T Consensus 185 pdGk~a~vt~~nse~~~~id~~t~-~~~d~i~---v~n----~p~~----~~~~~dGk~~~v-~~~~v~vvd~~~~~~-v 250 (441)
T d1qnia2 185 YTGKYATSTCYNSERAVDLAGTMR-NDRDWVV---VFN----VERI----AAAVKAGNFKTI-GDSKVPVVDGRGESE-F 250 (441)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTC-SSBCEEE---EEE----HHHH----HHHHHTTCCBCC-TTCCCCEEECSSSCS-S
T ss_pred CCCCEEEEEECCCCCEEEEECCCC-CEEEEEE---ECC----CCCE----EEEECCCCEEEE-CCCCCEEEECCCCCC-E
T ss_conf 999989998517873189851571-2178999---688----5110----799669999996-999828998036870-6
Q ss_pred EEEECCCCCCCEEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEE-------EEECCCCCCCCCEEEEEEECCCCCCE
Q ss_conf 55315999998179997649999999-99679809999888997025-------74157887887859999922999999
Q 000697 1171 VNPIPSSSDCSISALTASQVHGGQLA-AGFVDGSVRLYDVRTPDMLV-------CSTRPHTQQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1171 i~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~DG~IrIwDlr~~~~~v-------~~~~~~~~h~~~I~si~~sp~~~g~~ 1242 (1348)
+..++.+.. ...+ ..+++|++++ ++..+++|.+||+.+..... ..........-......|.++ +..
T Consensus 251 ~~~IPvgks--PhGv-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~--g~~ 325 (441)
T d1qnia2 251 TRYIPVPKN--PHGL-NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR--GNA 325 (441)
T ss_dssp EEEECCBSS--CCCE-EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS--SEE
T ss_pred EEEEECCCC--CCCC-EECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCC--CEE
T ss_conf 899717988--6672-68999878999077599389998322445752568842479960145547665226578--559
Q ss_pred EEEEECCCCEEEEECCC---------CCCCEEEEE-----CCCCCEEEEEEECCCCEEEEE---ECCC----------CE
Q ss_conf 99997899399998688---------973169990-----589986999990799999999---6799----------09
Q 000697 1243 IVSASQAGDIQFLDIRN---------HKDAYLTID-----AHRGSLSALAVHRHAPIIASG---SAKQ----------LI 1295 (1348)
Q Consensus 1243 LvSgs~DG~I~IWDlr~---------~~~~i~tl~-----~h~~~ItsLafspdg~~Lasg---S~Dg----------~I 1295 (1348)
+.+...|..|..|++.. ....+..+. +|...+.+..++|+|++|+++ |.|+ .-
T Consensus 326 yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~ 405 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPEND 405 (441)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEE
T ss_pred EECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 98524431689723542213322677765686453266898775245422389884899657444255767888987644
Q ss_pred EEEECCCCEEEEEEC
Q ss_conf 999769926899945
Q 000697 1296 KVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1296 ~Iwd~~g~~l~~i~~ 1310 (1348)
.+.|++|+.+..+..
T Consensus 406 q~~~i~~~~~~~~~~ 420 (441)
T d1qnia2 406 QLIDISGEEMKLVHD 420 (441)
T ss_dssp EEEECSSSSCEEEEE
T ss_pred EEEEECCCEEEEEEC
T ss_conf 269815975799843
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.99 E-value=1.6e-06 Score=59.89 Aligned_cols=238 Identities=11% Similarity=0.160 Sum_probs=100.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC---CCEEEEEEEEECCC-CEEEEE-ECCCEEEEEEC
Q ss_conf 82899995899999999789949999879993888962799999---98379999860899-899999-68982999834
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD---KGISKLCLVNELDV-SLLLVA-SCNGNIRIWKD 1111 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~---~~ItsI~f~ns~d~-~~Lvtg-s~DG~IrIWdl 1111 (1348)
.+..++++++++++++-..+..|++||.+ ++.+..+....... .....+.+. .+. ..+++. +.++.|..++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEEEECT
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCC
T ss_conf 90079994999899997998989999699-99999816657886642266300012--3445520000477531000002
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC-CCCCEEEEEEECC
Q ss_conf 577785058850102357899621250489993599969999879829999877896035531599-9998179997649
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQV 1190 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~-~~~~VtsL~~~s~ 1190 (1348)
. +..... + -......... ++..+++..+++....+.+.+++.... .+..+... .......+ ...+
T Consensus 101 ~---g~~~~~--~--~~~~~~~p~~----~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i-~~d~ 166 (279)
T d1q7fa_ 101 Y---GQFVRK--F--GATILQHPRG----VTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGV-VVND 166 (279)
T ss_dssp T---SCEEEE--E--CTTTCSCEEE----EEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEE-EECS
T ss_pred C---CCCEEE--C--CCCCCCCCCE----ECCCCCCCEEEEEECCCEEEEECCCCC--EEECCCCCCCCCCCCEE-EECC
T ss_conf 5---630240--3--8886425420----000147847999632632567626875--01002200102566243-2012
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCCCEEEEEC
Q ss_conf 9999999967980999988899702574157887887859999922999999999978-993999986889731699905
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1191 dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~-DG~I~IWDlr~~~~~i~tl~~ 1269 (1348)
+++++++....+.|++||.... ....+ ...+.......+++.++ ++++++-.. ++.|.+|+.. + +.+.++..
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~G~--~~~~~-g~~g~~~~P~giavD~~--G~i~Vad~~~~~~v~~f~~~-G-~~~~~~~~ 239 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYEGQ--YLRQI-GGEGITNYPIGVGINSN--GEILIADNHNNFNLTIFTQD-G-QLISALES 239 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETTCC--EEEEE-SCTTTSCSEEEEEECTT--CCEEEEECSSSCEEEEECTT-S-CEEEEEEE
T ss_pred CEEEEEEECCCCCEEEEECCCC--EEEEE-CCCCCCCCCCCCCCCCC--CEEEEEECCCCCEEEEECCC-C-CEEEEEEC
T ss_conf 0017862013551002304794--44530-11321148762323147--86999978998089999999-9-99999968
Q ss_pred C--CCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 8--99869999907999999996799099997
Q 000697 1270 H--RGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1270 h--~~~ItsLafspdg~~LasgS~Dg~I~Iwd 1299 (1348)
. ....+.+++.+++.++++ +.++.|++|.
T Consensus 240 ~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr 270 (279)
T d1q7fa_ 240 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 270 (279)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCCCEEEEEEECCCCEEEE-ECCCEEEEEE
T ss_conf 888898837999089919999-1899699987
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=3.6e-06 Score=57.25 Aligned_cols=238 Identities=8% Similarity=-0.007 Sum_probs=140.5
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 982899995899999999-7899499998799938889627999999837999986089989999968982999834577
Q 000697 1036 KGTKTALLQPFSPIVVAA-DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latg-s~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~ 1114 (1348)
..+..+++++++...++. +..+.+..++.............. .....+++ .+++.+.++....+.+++++...
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~p~gvav--~~~g~i~v~d~~~~~i~~~~~~~- 87 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL---YQPQGLAV--DGAGTVYVTDFNNRVVTLAAGSN- 87 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC---CSCCCEEE--CTTCCEEEEETTTEEEEECTTCS-
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC---CCCEEEEE--CCCCCEEEEEEEECEEEEEEECC-
T ss_conf 9878899969999999971899889999389966897436986---68408999--38998898631000035542112-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 78505885010235789962125048999359996999987982999987789603553159999981799976499999
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
...+ .... ......+ +++.+++..+++-.....+..++..... .......... ...++ ...+++++
T Consensus 88 ---~~~~---~~~~-~~~~p~~----iavd~~g~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~-~p~~i-~~~~~g~~ 153 (260)
T d1rwia_ 88 ---NQTV---LPFD-GLNYPEG----LAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLN-DPDGV-AVDNSGNV 153 (260)
T ss_dssp ---CCEE---CCCC-SCCSEEE----EEECTTCCEEEEEGGGTEEEEECTTCSS-CEECCCCSCC-SCCEE-EECTTCCE
T ss_pred ---CEEE---EEEE-EEEECCC----CCCCCCCEEEEECCCCCCCCCCCCCCCE-EEEEEECCCC-CCCEE-EECCCCCE
T ss_conf ---0000---0010-0000000----0245532057503355532112322220-1223203667-75205-45489988
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-CCCCC
Q ss_conf 99996798099998889970257415788788785999992299999999997899399998688973169990-58998
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGS 1273 (1348)
Q Consensus 1195 LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~-~h~~~ 1273 (1348)
+++...++.|..+|........... ........+++.++ ++++++...++.|..++.... ....+. ..-..
T Consensus 154 ~v~~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~gi~~d~~--g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~ 225 (260)
T d1rwia_ 154 YVTDTDNNRVVKLEAESNNQVVLPF----TDITAPWGIAVDEA--GTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLNT 225 (260)
T ss_dssp EEEEGGGTEEEEECTTTCCEEECCC----SSCCSEEEEEECTT--CCEEEEETTTTEEEEECTTCS--CCEECCCCSCCC
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEC----CCCCCCCCCEEEEE--EEEEEEECCCCEEEEEECCCC--EEEEECCCCCCC
T ss_conf 6410256433222343100122210----11478763123100--013432148998999969997--699970699898
Q ss_pred EEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 6999990799999999679909999769
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1274 ItsLafspdg~~LasgS~Dg~I~Iwd~~ 1301 (1348)
...+++++++.++++-..+++|+.++..
T Consensus 226 P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 226 PLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEEEEEECCCCEEEEECCCCEEEEEECC
T ss_conf 1799990899999997999989999599
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.83 E-value=5.2e-06 Score=56.07 Aligned_cols=235 Identities=10% Similarity=-0.031 Sum_probs=128.6
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98289999589999999978994999987999388896279999998379999860899899999689829998345777
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~ 1115 (1348)
..+..++++|+|.++++...++.|..|+.. ++.. .+.... ..+.+++| .++++++++...++.+..|+.....
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~---~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVE---GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECS---SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCCCCEEECCCCCEEEEECCCCEEEEEECC-CCEE-EEECCC---CCCCEEEE--CCCCCEEEEECCCCEEEEEEECCCC
T ss_conf 884787799998899996889989999089-9889-997179---98536898--6778869983289537888710111
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC---------CCCCCCEEEEE
Q ss_conf 850588501023578996212504899935999699998798299998778960355315---------99999817999
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP---------SSSDCSISALT 1186 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~---------~~~~~~VtsL~ 1186 (1348)
+....+ .... ....... +.+.+++..+++...++.+..+|...+. ...... .........+.
T Consensus 101 ~~~~~~---~~~~-~~~~~n~----i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~ 171 (302)
T d2p4oa1 101 GTVETL---LTLP-DAIFLNG----ITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLK 171 (302)
T ss_dssp SCEEEE---EECT-TCSCEEE----EEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred CCEEEC---CCCC-CCCCCCE----EEECCCCCEEEECCCCCCCEEEECCCCC-CEEEECCCCCCEEECCCCCCCCCCCC
T ss_conf 101210---2357-8632216----6771579787503565541024216873-03675188640143157632243201
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf 76499999999967980999988899702574157887887859999922999999999978993999986889731699
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~t 1266 (1348)
.. .+.++++.+.++.|..++........ ..... ........+++.++ |+++++...++.|..++.......+..
T Consensus 172 -~~-~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~~pdgia~d~d--G~l~va~~~~~~V~~i~p~G~~~~~~~ 245 (302)
T d2p4oa1 172 -RF-GNFLYVSNTEKMLLLRIPVDSTDKPG-EPEIF-VEQTNIDDFAFDVE--GNLYGATHIYNSVVRIAPDRSTTIIAQ 245 (302)
T ss_dssp -EE-TTEEEEEETTTTEEEEEEBCTTSCBC-CCEEE-EESCCCSSEEEBTT--CCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred -CC-CCCEEEECCCCCEEEECCCCCCCCCC-CCCCC-CCCCCCCCEEECCC--CCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf -16-98304403788769863443333234-53101-58998752378799--999999748991899878997899996
Q ss_pred EECCCCCEEEEEE---ECCCCEEEEEECC
Q ss_conf 9058998699999---0799999999679
Q 000697 1267 IDAHRGSLSALAV---HRHAPIIASGSAK 1292 (1348)
Q Consensus 1267 l~~h~~~ItsLaf---spdg~~LasgS~D 1292 (1348)
....-...++++| .+|++.|..++..
T Consensus 246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 246 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 37898882489970878878989999889
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.81 E-value=6.1e-06 Score=55.55 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=157.4
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 93888962799999983799998608998999996898299983457778505885010235789962125048999359
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1146 (1348)
Q Consensus 1067 ~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~ 1146 (1348)
.+.+..+.... .+..+++ .+|++++++...++.|..|+.. ++... +......+.+ ++|.++
T Consensus 18 ~~v~~~~p~~~----~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~---g~~~~------~~~~~~~~~g----la~~~d 78 (302)
T d2p4oa1 18 AKIITSFPVNT----FLENLAS--APDGTIFVTNHEVGEIVSITPD---GNQQI------HATVEGKVSG----LAFTSN 78 (302)
T ss_dssp EEEEEEECTTC----CEEEEEE--CTTSCEEEEETTTTEEEEECTT---CCEEE------EEECSSEEEE----EEECTT
T ss_pred CCEEEECCCCC----CCCCEEE--CCCCCEEEEECCCCEEEEEECC---CCEEE------EECCCCCCCE----EEECCC
T ss_conf 20788888998----8478779--9998899996889989999089---98899------9717998536----898677
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC----
Q ss_conf 99699998798299998778960355315-9999981799976499999999967980999988899702574157----
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---- 1221 (1348)
Q Consensus 1147 ~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~-~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~---- 1221 (1348)
+..+++...++.+..|+..........+. .........+ .+.++++++++.+.++.+..+|.......+.....
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i-~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI-TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE-EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEE-EECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCE
T ss_conf 8869983289537888710111101210235786322166-771579787503565541024216873036751886401
Q ss_pred --CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC--EEEEECCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf --887887859999922999999999978993999986889731--6999058998699999079999999967990999
Q 000697 1222 --HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1297 (1348)
Q Consensus 1222 --~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~--i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~I 1297 (1348)
..........+.+.. +..+++.+..+.|..++....... ...+. .......+++.++|.++++...++.|..
T Consensus 158 ~~~~~~~~~~ngi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 158 SNSESVFPAANGLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp SSTTCCSCSEEEEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred EECCCCCCCCCCCCCCC---CCEEEECCCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCEEECCCCCEEEEECCCCCEEE
T ss_conf 43157632243201169---8304403788769863443333234531015-8998752378799999999748991899
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEEE---ECCCCEEEEEECC
Q ss_conf 9769926899945578645456678389999---4799799999889
Q 000697 1298 FSLEGEQLGTIRYHHPSFMAQKIGSVNCLTF---HPYQVLLAAGSAD 1341 (1348)
Q Consensus 1298 wd~~g~~l~~i~~~h~~f~~~~~~~Vtslaf---spdg~~Latgs~D 1341 (1348)
++.+++....... .. .....++++| .+|++.|..++..
T Consensus 234 i~p~G~~~~~~~~-~~-----~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 234 IAPDRSTTIIAQA-EQ-----GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECTTCCEEEEECG-GG-----TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEEEC-CC-----CCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 8789978999963-78-----98882489970878878989999889
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=6.3e-06 Score=55.48 Aligned_cols=233 Identities=9% Similarity=0.073 Sum_probs=147.8
Q ss_pred CEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEE
Q ss_conf 83799998608998999996-89829998345777850588501023578996212504899935999699998-79829
Q 000697 1082 GISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSI 1159 (1348)
Q Consensus 1082 ~ItsI~f~ns~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I 1159 (1348)
...++++ .+++...++.. ..+.+..++... . .... ....+ ...... +++++++. ++++. ..+.+
T Consensus 15 ~P~~vav--d~dG~i~v~~~~~~~~i~~~~~~~--~-~~~~---~~~~~-~~~p~g----vav~~~g~-i~v~d~~~~~i 80 (260)
T d1rwia_ 15 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGS--T-GTTV---LPFNG-LYQPQG----LAVDGAGT-VYVTDFNNRVV 80 (260)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEEC-------CEEE---CCCCS-CCSCCC----EEECTTCC-EEEEETTTEEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCCEEEEECCCC--C-EEEE---ECCCC-CCCCEE----EEECCCCC-EEEEEEEECEE
T ss_conf 8788999--699999999718998899993899--6-6897---43698-668408----99938998-89863100003
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99987789603553159999981799976499999999967980999988899702574157887887859999922999
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 ~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~ 1239 (1348)
++++..... .+..... .....++ ...++++++++...+..+..++............. ......+++.++
T Consensus 81 ~~~~~~~~~-~~~~~~~--~~~p~~i-avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~-- 150 (260)
T d1rwia_ 81 TLAAGSNNQ-TVLPFDG--LNYPEGL-AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG----LNDPDGVAVDNS-- 150 (260)
T ss_dssp EECTTCSCC-EECCCCS--CCSEEEE-EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS----CCSCCEEEECTT--
T ss_pred EEEEECCCE-EEEEEEE--EEECCCC-CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCCCEEEECCC--
T ss_conf 554211200-0000100--0000000-24553205750335553211232222012232036----677520545489--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 99999997899399998688973169990-58998699999079999999967990999976992689994557864545
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQ 1318 (1348)
Q Consensus 1240 g~~LvSgs~DG~I~IWDlr~~~~~i~tl~-~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~g~~l~~i~~~h~~f~~~ 1318 (1348)
++.+++...++.|..+|.... ....+. ..-.....+++.+++.++++....+.|..++.++.....+.. .
T Consensus 151 g~~~v~~~~~~~i~~~d~~~~--~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~--~----- 221 (260)
T d1rwia_ 151 GNVYVTDTDNNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--T----- 221 (260)
T ss_dssp CCEEEEEGGGTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC--C-----
T ss_pred CCEEEECCCCCCCCCCCCCCC--EEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECC--C-----
T ss_conf 988641025643322234310--0122210114787631231000134321489989999699976999706--9-----
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 66783899994799799999889809992
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
......++++++++.++++-..++.|+..
T Consensus 222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 222 GLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 98981799990899999997999989999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.77 E-value=8.3e-06 Score=54.56 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=27.4
Q ss_pred EEEECCCCEEEEEE-CCCEEEEEECCCCCEEE--EEE-CCCCCCCEEEEEEECCCCCEEEEE-ECCCEEEEEECCCC
Q ss_conf 99935999699998-79829999877896035--531-599999817999764999999999-67980999988899
Q 000697 1141 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMV--NPI-PSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1141 v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i--~~l-~~~~~~~VtsL~~~s~dg~~LvsG-s~DG~IrIwDlr~~ 1212 (1348)
+.|+|++.+++++. ....|.+|+........ ... ....+.....+ .++++++++++. ..++.|.+|+....
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i-~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV-AMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE-EECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEE-EECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 7888999989982079987999970688716652511112788740899-988998669995158998999995598
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.1e-06 Score=58.93 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCHHHCCH
Q ss_conf 99999998412799956551000122000
Q 000697 835 SQCVLAMCTLAKDPSPRIATLGRRVLSII 863 (1348)
Q Consensus 835 ~~~~~~l~~l~~Dp~p~v~~~a~~~~~~i 863 (1348)
..+...+..|..|+..+|+..|+..++.+
T Consensus 557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 557 SEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999975799877999999999987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.74 E-value=1e-05 Score=53.95 Aligned_cols=242 Identities=11% Similarity=0.127 Sum_probs=161.1
Q ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEE--ECCCEE
Q ss_conf 837999986089989999968982999834577785058850102357899621250489993599969999--879829
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS--GEVSSI 1159 (1348)
Q Consensus 1082 ~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsg--g~Dg~I 1159 (1348)
....+++ +++++++++-..+..|++|+.. ++. +..+............ ...+.+..+.+..++. +.++.|
T Consensus 24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~---G~~--~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKE---GRF--KFQFGECGKRDSQLLY-PNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp CEEEEEE--CTTCCEEEEEGGGTEEEEECTT---SCE--EEEECCBSSSTTCBSS-EEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCEEEEEECC---CCE--EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 9007999--4999899997998989999699---999--9981665788664226-630001234455200004775310
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99987789603553159999981799976499999999967980999988899702574157887887859999922999
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 ~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~ 1239 (1348)
..++... . ....+..........+ ...++++++++....+.+.+++.... .+..+ ....+......+++.++
T Consensus 96 ~~~~~~g-~-~~~~~~~~~~~~p~~~-avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~-g~~~~~~~~~~i~~d~~-- 167 (279)
T d1q7fa_ 96 QIYNQYG-Q-FVRKFGATILQHPRGV-TVDNKGRIIVVECKVMRVIIFDQNGN--VLHKF-GCSKHLEFPNGVVVNDK-- 167 (279)
T ss_dssp EEECTTS-C-EEEEECTTTCSCEEEE-EECTTSCEEEEETTTTEEEEECTTSC--EEEEE-ECTTTCSSEEEEEECSS--
T ss_pred CCCCCCC-C-CEEECCCCCCCCCCEE-CCCCCCCEEEEEECCCEEEEECCCCC--EEECC-CCCCCCCCCCEEEECCC--
T ss_conf 0000256-3-0240388864254200-00147847999632632567626875--01002-20010256624320120--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE--CCCCCEEEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf 99999997899399998688973169990--58998699999079999999967-9909999769926899945578645
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLEGEQLGTIRYHHPSFM 1316 (1348)
Q Consensus 1240 g~~LvSgs~DG~I~IWDlr~~~~~i~tl~--~h~~~ItsLafspdg~~LasgS~-Dg~I~Iwd~~g~~l~~i~~~h~~f~ 1316 (1348)
++.+++....+.|++||... +.+.++. +.......+++.+++.++++-+. ++.|.+|+.+|+.+.++.. ..
T Consensus 168 g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~-~~--- 241 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-KV--- 241 (279)
T ss_dssp SEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE-SS---
T ss_pred EEEEEEECCCCCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEC-CC---
T ss_conf 01786201355100230479--4445301132114876232314786999978998089999999999999968-88---
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45667838999947997999998898099929
Q 000697 1317 AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1317 ~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.......+++.+++.+++ ++.++.|++|.
T Consensus 242 --~~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 242 --KHAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp --CCSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred --CCCCEEEEEEECCCCEEE-EECCCEEEEEE
T ss_conf --889883799908991999-91899699987
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.71 E-value=1.2e-05 Score=53.30 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=148.8
Q ss_pred EEEEEEC--CCCEEEEE--CCCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEE
Q ss_conf 9999978--99499998--799938--88962799999983799998608998999996898299983457778505885
Q 000697 1049 IVVAADE--NERIKIWN--YEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT 1122 (1348)
Q Consensus 1049 ~Latgs~--dg~I~IWd--~~t~~~--i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs 1122 (1348)
.|++|+. .+.|.++. .++++. +....... ...++.|+| +++++.|+++.. +.+..|.+... +......
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~--~~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~-~~~~~~~ 77 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQ--DEPISWMTF--DHERKNIYGAAM-KKWSSFAVKSP-TEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCT--TCCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEET-TEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCC--CCCCCEEEE--CCCCCEEEEEEC-CCEEEEEEECC-CCEEEEE
T ss_conf 99999314999899999858889389845445168--999777999--489899999938-94789999089-9769876
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEEE---CCCEEEEEECCCCC---------------EEEEEECCCCCCCEEE
Q ss_conf 01023578996212504899935999699998---79829999877896---------------0355315999998179
Q 000697 1123 AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQ---------------QMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1123 ~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg---~Dg~I~IWDl~t~~---------------~~i~~l~~~~~~~Vts 1184 (1348)
. ... ...... +.+++++..+++.. ..+.|..+...... .............+.+
T Consensus 78 ~-~~~---~~~p~~----v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~ 149 (365)
T d1jofa_ 78 S-HPI---GGHPRA----NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp E-EEC---CSSGGG----GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred E-ECC---CCCCEE----EEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEE
T ss_conf 4-128---998678----99878998799999327997899867457887420686640330047646755688981159
Q ss_pred EEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEE--EECCCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 9976499999999967-98099998889970257--415788788785999992299999999997-8993999986889
Q 000697 1185 LTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVC--STRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNH 1260 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~-DG~IrIwDlr~~~~~v~--~~~~~~~h~~~I~si~~sp~~~g~~LvSgs-~DG~I~IWDlr~~ 1260 (1348)
+ .++++++++++... ...|.+|+......... ..... ........+.|+|+ ++++++.. .++.|.+|++...
T Consensus 150 v-~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~pd--g~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 150 M-VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPT--GNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp E-EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTT
T ss_pred E-EECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEC-CCCCCEEEEEECCC--CCEEEEECCCCCEEEEEEECCC
T ss_conf 7-888999989982079987999970688716652511112-78874089998899--8669995158998999995598
Q ss_pred CC-CEEE---EEC--------------CCCCEEEEEEECCCCEEEEEEC-C-----CCEEEEECC--CCEEEEEECCCCC
Q ss_conf 73-1699---905--------------8998699999079999999967-9-----909999769--9268999455786
Q 000697 1261 KD-AYLT---IDA--------------HRGSLSALAVHRHAPIIASGSA-K-----QLIKVFSLE--GEQLGTIRYHHPS 1314 (1348)
Q Consensus 1261 ~~-~i~t---l~~--------------h~~~ItsLafspdg~~LasgS~-D-----g~I~Iwd~~--g~~l~~i~~~h~~ 1314 (1348)
.. .+.. ... +......+.++|+|++++++.. + ..|..|+.. +............
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEE
T ss_conf 75377873124024556556665444435776316998999978997135787542279999856887144676766777
Q ss_pred CCCCCCCCEEEEEEEC-CCCEEEEEEC-CCEEEECC
Q ss_conf 4545667838999947-9979999988-98099929
Q 000697 1315 FMAQKIGSVNCLTFHP-YQVLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafsp-dg~~Latgs~-Dg~I~IWd 1348 (1348)
.......+++++| ++++|+++.. ++.|.+|+
T Consensus 306 ---~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 306 ---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ---CCCCCCCEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf ---679986478964899999999967999499999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.7e-05 Score=52.31 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=134.0
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCE--EEEEECCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 499998799938889627999999837999986089989999968-982--99983457778505885010235789962
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGN--IRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1058 ~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~-DG~--IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.|.|.|.+.........+ . ..+...+| +|||+.|+-... .+. +.+.+... +..+.. ..+....
T Consensus 20 ~l~i~d~dG~~~~~l~~~-~---~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~ 85 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRS-P---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV------ASFPRHN 85 (269)
T ss_dssp EEEEEETTSCSCEEEEEE-S---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTT--CCEEEE------ECCSSCE
T ss_pred EEEEECCCCCCCEEEECC-C---CCEEEEEE--CCCCCEEEEEEEECCCCCEEEEECCC--CCEEEE------EEEECCC
T ss_conf 999992899976798658-9---84260388--78999899998152675134431136--750677------6420245
Q ss_pred CCCCEEEEEECCCCEEEEEE-CCCE--EEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC-EEEEEECCCE--EEEEE
Q ss_conf 12504899935999699998-7982--99998778960355315999998179997649999-9999967980--99998
Q 000697 1135 RCSNVVVDWQQQSGYLYASG-EVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG-QLAAGFVDGS--VRLYD 1208 (1348)
Q Consensus 1135 ~s~~~~v~ws~~~~~Llsgg-~Dg~--I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~-~LvsGs~DG~--IrIwD 1208 (1348)
.. ..|++++..++... .++. +..+...... .......... .... ....++. .+++...+|. |...+
T Consensus 86 ~~----~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 86 GA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSN-NTEP-TWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp EE----EEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSC-EEEE-EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CC----CEECCCCCEEEEEEECCCCCCEEECCCCCCC--CEEEEECCCC-CCCC-CCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 43----0244889864676402786410000222122--0000101442-1145-4345544330000126874386542
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf 8899702574157887887859999922999999999978-993999986889731699905899869999907999999
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1287 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~-DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~~La 1287 (1348)
..... ..... ..........|+|+ +..++..+. +|...+|......... .............|+|+|+.|+
T Consensus 158 ~~~~~-~~~~~----~~~~~~~~~~~spd--g~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~ 229 (269)
T d2hqsa1 158 INGGA-PQRIT----WEGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVI 229 (269)
T ss_dssp TTSSC-CEECC----CSSSEEEEEEECTT--SSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEE
T ss_pred CCCCC-CEEEE----CCCCCCCCCCCCCC--CCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEE
T ss_conf 13310-00100----01222234322345--43057786058801256760356440-5850686544558989999999
Q ss_pred EEEC---CCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9967---9909999769926899945578645456678389999479
Q 000697 1288 SGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1288 sgS~---Dg~I~Iwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
-.+. ...+.+++++|.....+.. .. +.+...+|+|.
T Consensus 230 f~s~~~~~~~l~~~~~dg~~~~~lt~-~~-------g~~~~p~WSP~ 268 (269)
T d2hqsa1 230 YSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 268 (269)
T ss_dssp EEEEETTEEEEEEEETTSCCEEECCC-SS-------SEEEEEEECCC
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEC-CC-------CCEEEEEECCC
T ss_conf 99817998479999999997799857-99-------85883782898
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2e-06 Score=59.19 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCHHHCCH
Q ss_conf 99999998412799956551000122000
Q 000697 835 SQCVLAMCTLAKDPSPRIATLGRRVLSII 863 (1348)
Q Consensus 835 ~~~~~~l~~l~~Dp~p~v~~~a~~~~~~i 863 (1348)
..++..++.+..||.|.|+..+-+.+..+
T Consensus 518 ~~ilp~ll~~~~D~v~nVR~~a~~~l~~i 546 (588)
T d1b3ua_ 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999885999879999999999999
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.9e-06 Score=57.95 Aligned_cols=261 Identities=17% Similarity=0.067 Sum_probs=137.6
Q ss_pred HHHHHHHHHCCCCCC---CCCCCCHHHHHHHHHC----HHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCHHHHHHHCCCC
Q ss_conf 674368772279888---8999732357887411----14577899999998317977899-988607536668750578
Q 000697 442 QLTAFEVWLDHGSEH---KKPPEQLPIVLQVLLS----QCHRFRALVLLGRFLDMGPWAVD-LALSVGIFPYVLKLLQTT 513 (1348)
Q Consensus 442 qLtafe~~L~~g~~~---~~~p~~lP~vLq~LlS----~~~rlral~ll~~Fld~g~wAv~-lal~~gifpyvlklL~s~ 513 (1348)
.+.++..+....... ......++++++.|.+ ...|..|+..+..++...+--.. ......+++.+..+++++
T Consensus 149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (458)
T d1ibrb_ 149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 228 (458)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99888898763141000233889999999986154567999999999999998861324566777777676688772599
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC---------------
Q ss_conf 24566699999998860590122255523671346442168888467778999999999518911---------------
Q 000697 514 TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR--------------- 578 (1348)
Q Consensus 514 ~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~--------------- 578 (1348)
..+.|..+.-.+.+|+..++.--..-+.+....++...+.+.+ ++.+.-++-.+..+++....
T Consensus 229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 306 (458)
T d1ibrb_ 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 306 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999871999998887789999999843545--99999999999998998899998503678764189
Q ss_pred -----HHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHH
Q ss_conf -----237898445699999953179999999988999999999997311554888841025804666321069997789
Q 000697 579 -----GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 653 (1348)
Q Consensus 579 -----gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VR 653 (1348)
.-....-..+...+...+.+....+.+....+|.++.-+++.+.....+.- + ..+...+...++++.+.+|
T Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r 382 (458)
T d1ibrb_ 307 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYR 382 (458)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHCCCCHHHH
T ss_conf 99999999988998726677640001021011223399999999999987551755---6-6789999998569998999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999974003476778899889988763899999999999996520679963399999999999973
Q 000697 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 654 aa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~ 722 (1348)
.+++++|+.+......... ..+ -..+...++...+|++|.||..+..+++++...
T Consensus 383 ~aal~~l~~i~~~~~~~~~------~~~--------l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEPSQL------KPL--------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHTSSSSCTTTT------CTT--------TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHH------HHH--------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999975477678------988--------999999999884899899999999999999997
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.32 E-value=0.00011 Score=46.27 Aligned_cols=246 Identities=11% Similarity=0.102 Sum_probs=128.7
Q ss_pred CCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEEECCC-CCCCCEEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 98289999589999999978-------9949999879993888962799-999983799998608998999996898299
Q 000697 1036 KGTKTALLQPFSPIVVAADE-------NERIKIWNYEEDTLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~-------dg~I~IWd~~t~~~i~~l~~h~-~~~~~ItsI~f~ns~d~~~Lvtgs~DG~Ir 1107 (1348)
..+...+|+++|++.++... ++.|..|+.+++.......... ........+.| .++++.++++...+.|.
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~--~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE--ECCCCEEEEEECCCEEE
T ss_conf 8971739969999999987540234529999999899995999977765567885306999--07999899997798399
Q ss_pred EEECCCCCCCEEEEEEEECCCCCC-CCCCCCCEEEEEECCCCEEEEEEC----------------CCEEEEEECCCCCEE
Q ss_conf 983457778505885010235789-962125048999359996999987----------------982999987789603
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGE----------------VSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~-~~V~s~~~~v~ws~~~~~Llsgg~----------------Dg~I~IWDl~t~~~~ 1170 (1348)
..+... +..... .....+.. ..... +.+.+++. ++++.. .|.|..++.....
T Consensus 96 ~~~~~g--~~~~~~--~~~~~g~~~~~pnd----l~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~-- 164 (314)
T d1pjxa_ 96 VVQTDG--TFEEIA--KKDSEGRRMQGCND----CAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-- 164 (314)
T ss_dssp EEETTS--CEEECC--SBCTTSCBCBCCCE----EEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE--
T ss_pred EEECCC--CEEEEE--ECCCCCCCCCCCCE----EEECCCCC-EEEECCCCCCCCCCCCCEECCCCCEEEEEEECCCE--
T ss_conf 994777--479997--33432454578727----89888998-99914866754320110002688438999525740--
Q ss_pred EEEECCCCCCCEEEEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEEE--EECCCC-CCCCCEEEEEEECCCCCCE
Q ss_conf 55315999998179997649999-----999996798099998889970257--415788-7887859999922999999
Q 000697 1171 VNPIPSSSDCSISALTASQVHGG-----QLAAGFVDGSVRLYDVRTPDMLVC--STRPHT-QQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1171 i~~l~~~~~~~VtsL~~~s~dg~-----~LvsGs~DG~IrIwDlr~~~~~v~--~~~~~~-~h~~~I~si~~sp~~~g~~ 1242 (1348)
.... ..... -+.+ .+.++++ ++++.+..+.|..||+........ .+.... ........+++..+ |++
T Consensus 165 ~~~~-~~~~~-pNGi-~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~--Gnl 239 (314)
T d1pjxa_ 165 IQVD-TAFQF-PNGI-AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED--NNL 239 (314)
T ss_dssp EEEE-EEESS-EEEE-EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT--CCE
T ss_pred EEEE-CCCCE-EEEE-EECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECC--CCE
T ss_conf 3750-78532-2136-99788776303799986024311776116765430156899713356664102578347--857
Q ss_pred EEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCC-EEEEEECCCCEEEEEC
Q ss_conf 999978993999986889731699905899869999907999-9999967990999976
Q 000697 1243 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1243 LvSgs~DG~I~IWDlr~~~~~i~tl~~h~~~ItsLafspdg~-~LasgS~Dg~I~Iwd~ 1300 (1348)
.++....+.|.+||...+ ..+..+.......++++|.++++ ++++.+.++.|..++.
T Consensus 240 yVa~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 240 LVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCEEEEEECCCC-EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 999827999999969999-7999997999987899992898999999878991999978
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.22 E-value=0.00018 Score=44.80 Aligned_cols=240 Identities=13% Similarity=0.138 Sum_probs=138.7
Q ss_pred CCEEEEEEEEECCCCEEEEEEC-------CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 9837999986089989999968-------982999834577785058850102357899621250489993599969999
Q 000697 1081 KGISKLCLVNELDVSLLLVASC-------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1153 (1348)
Q Consensus 1081 ~~ItsI~f~ns~d~~~Lvtgs~-------DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsg 1153 (1348)
.....++| .+++++.++... +|.|..|+..+ +....... ............ +.+.++++.++++
T Consensus 18 ~g~EGpa~--d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~-~~~~~~~g~P~G----l~~~~dg~~l~va 88 (314)
T d1pjxa_ 18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICK-PEVNGYGGIPAG----CQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEEC-CEETTEECCEEE----EEECSSSSEEEEE
T ss_pred CCCEEEEE--ECCCCEEEEECCCCCCCCCCCEEEEEECCC--CCEEEEEC-CCCCCCCCCCEE----EEEECCCCEEEEE
T ss_conf 89717399--699999999875402345299999998999--95999977-765567885306----9990799989999
Q ss_pred ECCCEEEEEECCCCCEEEEEECCCCCC---CEEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCCEE
Q ss_conf 879829999877896035531599999---81799976499999999967---------------980999988899702
Q 000697 1154 GEVSSIMLWDLEKEQQMVNPIPSSSDC---SISALTASQVHGGQLAAGFV---------------DGSVRLYDVRTPDML 1215 (1348)
Q Consensus 1154 g~Dg~I~IWDl~t~~~~i~~l~~~~~~---~VtsL~~~s~dg~~LvsGs~---------------DG~IrIwDlr~~~~~ 1215 (1348)
...+.|..+|..... ........... ..+.+ .+.++|++.++... +|.|..++... + .
T Consensus 89 d~~~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl-~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~ 164 (314)
T d1pjxa_ 89 DMRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-M 164 (314)
T ss_dssp ETTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-E
T ss_pred ECCCEEEEEECCCCE-EEEEECCCCCCCCCCCCEE-EECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEECC-C-E
T ss_conf 779839999477747-9997334324545787278-9888998999148667543201100026884389995257-4-0
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCC-----EEEEEECCCCEEEEECCCCCCCE-----EEEEC-CCCCEEEEEEECCCC
Q ss_conf 57415788788785999992299999-----99999789939999868897316-----99905-899869999907999
Q 000697 1216 VCSTRPHTQQVERVVGISFQPGLDPA-----KIVSASQAGDIQFLDIRNHKDAY-----LTIDA-HRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1216 v~~~~~~~~h~~~I~si~~sp~~~g~-----~LvSgs~DG~I~IWDlr~~~~~i-----~tl~~-h~~~ItsLafspdg~ 1284 (1348)
....... ..-+.++|+++ +. ++++-+..+.|..||+...+... ..+.. .....-.+++..+|.
T Consensus 165 ~~~~~~~----~~pNGi~~~~d--~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 165 IQVDTAF----QFPNGIAVRHM--NDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEE----SSEEEEEEEEC--TTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred EEEECCC----CEEEEEEECCC--CCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCC
T ss_conf 3750785----32213699788--77630379998602431177611676543015689971335666410257834785
Q ss_pred EEEEEECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCE-EEEEECCCEEEEC
Q ss_conf 99999679909999769-926899945578645456678389999479979-9999889809992
Q 000697 1285 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIH 1347 (1348)
Q Consensus 1285 ~LasgS~Dg~I~Iwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~-Latgs~Dg~I~IW 1347 (1348)
++++....+.|.+|+.+ +..+..+.. .. ...++++|.++++. +++.+.+|.|..+
T Consensus 239 lyVa~~~~g~I~~~dp~~g~~~~~i~~-p~-------~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 239 LLVANWGSSHIEVFGPDGGQPKMRIRC-PF-------EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEEEC-SS-------SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEEC-CC-------CCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 799982799999996999979999979-99-------9878999928989999998789919999
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=0.00014 Score=45.56 Aligned_cols=200 Identities=13% Similarity=0.006 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHCH----HHHHHHHHHHHHHHCCCHHHHHHH-----------HHCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 997323578874111----457789999999831797789998-----------86075366687505782456669999
Q 000697 459 PPEQLPIVLQVLLSQ----CHRFRALVLLGRFLDMGPWAVDLA-----------LSVGIFPYVLKLLQTTTPELRQILVF 523 (1348)
Q Consensus 459 ~p~~lP~vLq~LlS~----~~rlral~ll~~Fld~g~wAv~la-----------l~~gifpyvlklL~s~~~elr~~~~F 523 (1348)
+|+-+++.+++|.+. .-|.-|.++|.+++..-.-..... ..-.+..-+++.+.+.....|.. +-
T Consensus 32 ~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~ 110 (458)
T d1ibrb_ 32 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSA-SQ 110 (458)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
T ss_conf 35899999999844899989999999999988632671111677641114999999999999986147982899999-99
Q ss_pred HHHHHHCC-CHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCC
Q ss_conf 99988605-90122255523671346442168888467778999999999518911237898445699999953179999
Q 000697 524 IWTKILAL-DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPN 602 (1348)
Q Consensus 524 Iwa~il~~-~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~ 602 (1348)
+++.+... .+... -+......+..+.+.......+.-+..+++.++.........-....++..+...+...
T Consensus 111 ~~~~i~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--- 183 (458)
T d1ibrb_ 111 CVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--- 183 (458)
T ss_dssp HHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT---
T ss_pred HHHHHHHHHCCCCC----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99999998678012----75105789999882032177888899888898763141000233889999999986154---
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHH-HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999988999999999997311554888841-025804666321069997789999999974003476
Q 000697 603 DAQTEPLFLQWLCLCLGKLWEDFTEAQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGF 668 (1348)
Q Consensus 603 ~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~-~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~~~ 668 (1348)
++.+++|..++-+++.+........... ........+..++.|++|+||.+++-+|+.++....
T Consensus 184 --~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 248 (458)
T d1ibrb_ 184 --EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248 (458)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --56799999999999999886132456677777767668877259989999999999999998719
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.15 E-value=0.00025 Score=43.72 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 9828999958999999997899499998799938889627999999837999986089989999968
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~ 1102 (1348)
..+..++|.+++++.++-...+.|..|+.+.++....+.... .....+++ .+++.++++...
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla~--~~dG~l~va~~~ 101 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---ANPAAIKI--HKDGRLFVCYLG 101 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---SSEEEEEE--CTTSCEEEEECT
T ss_pred CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCC---CCEEEEEE--CCCCCEEEEECC
T ss_conf 674707899999999997799999999899995999994899---87038999--999999999568
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=0.00027 Score=43.55 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=91.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 36668750578245666999999988605901222555236713464421688884677789999999995189112378
Q 000697 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1348)
Q Consensus 503 fpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 582 (1348)
.|-++++|+++.++.+..++-.+..+|..+...+..+.+.|+++..++.|.+++ ++.|.-++.+|..+..+++..|..
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--QNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 899999857999999999999999998499999999998885999999877999--899999999999997499888999
Q ss_pred HHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH---------------HHHHCCC
Q ss_conf 9844569999995317999999998899999999999731155488884102580466---------------6321069
Q 000697 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAI---------------YVPLLSE 647 (1348)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~---------------l~~ll~D 647 (1348)
..+.+.+..++..+.. +.++++|..++-+|..+..+....... ...+.... .......
T Consensus 82 i~~~g~v~~li~~l~~------~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRR------TGNAEIQKQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHTTCHHHHHHHHTT------CCCHHHHHHHHHHHHHHHTSSSTHHHH-HHHHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHCCHHHHHCCC
T ss_conf 9987982899999843------373889999999999998641357888-860107889998753221100003553021
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 99778999999997400
Q 000697 648 PQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 648 ~sP~VRaa~v~al~~~i 664 (1348)
..+.|+..+..+|..+.
T Consensus 155 ~~~~v~~~a~~~l~~~~ 171 (457)
T d1xm9a1 155 VDPEVFFNATGCLRNLS 171 (457)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 44999999999999873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=0.00029 Score=43.29 Aligned_cols=40 Identities=3% Similarity=0.047 Sum_probs=19.8
Q ss_pred CCCEEEEEEECCCCEEEEEECC---CCEEEEE-CCCCEEEEEEC
Q ss_conf 9986999990799999999679---9099997-69926899945
Q 000697 1271 RGSLSALAVHRHAPIIASGSAK---QLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1271 ~~~ItsLafspdg~~LasgS~D---g~I~Iwd-~~g~~l~~i~~ 1310 (1348)
.....++.|+|++.+++..... -.+.+++ .+++.+..+..
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 89879999999999999980069998499999999979999738
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.11 E-value=0.0003 Score=43.18 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=142.2
Q ss_pred CCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC----C
Q ss_conf 983799998608998999996898299983457778505885010235789962125048999359996999987----9
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE----V 1156 (1348)
Q Consensus 1081 ~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~----D 1156 (1348)
..+..++| .+++++.++-...+.|..|+... +..... .......... +++.+++..+++... .
T Consensus 40 ~~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g--~~~~~~-----~~~~~~~p~g----la~~~dG~l~va~~~~~~~~ 106 (319)
T d2dg1a1 40 LQLEGLNF--DRQGQLFLLDVFEGNIFKINPET--KEIKRP-----FVSHKANPAA----IKIHKDGRLFVCYLGDFKST 106 (319)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTCEEEEECTTT--CCEEEE-----EECSSSSEEE----EEECTTSCEEEEECTTSSSC
T ss_pred CCCEECEE--CCCCCEEEEECCCCEEEEEECCC--CEEEEE-----EECCCCCEEE----EEECCCCCEEEEECCCCCCC
T ss_conf 67470789--99999999977999999998999--959999-----9489987038----99999999999956897311
Q ss_pred CEEEEEECCCCCEEEEEECC-CCCCCEEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCCCCCCE
Q ss_conf 82999987789603553159-999981799976499999999967------98099998889970257415788788785
Q 000697 1157 SSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFV------DGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1157 g~I~IWDl~t~~~~i~~l~~-~~~~~VtsL~~~s~dg~~LvsGs~------DG~IrIwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+.+...+..... ....... ........+ .+.++|++.++... .|.+..++..... ........ ...
T Consensus 107 ~~i~~~~~~~~~-~~~~~~~~~~~~~~nd~-~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~----~~p 179 (319)
T d2dg1a1 107 GGIFAATENGDN-LQDIIEDLSTAYCIDDM-VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNI----SVA 179 (319)
T ss_dssp CEEEEECTTSCS-CEEEECSSSSCCCEEEE-EECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEE----SSE
T ss_pred EEEEEECCCCCE-EEEECCCCCCCCCCCCE-EEEECCCEEECCCCCCCCCCCCEEEEEECCCCE-EEEEEECC----CEE
T ss_conf 049987389963-64442677755587522-677306532001354002574215788416633-57886123----301
Q ss_pred EEEEEECCCCCCEE-EEEECCCCEEEEECCCCCCCEEEEE-------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 99999229999999-9997899399998688973169990-------589986999990799999999679909999769
Q 000697 1230 VGISFQPGLDPAKI-VSASQAGDIQFLDIRNHKDAYLTID-------AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1230 ~si~~sp~~~g~~L-vSgs~DG~I~IWDlr~~~~~i~tl~-------~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~ 1301 (1348)
+.++|+++ ++.| ++-+..+.|..|++........... ......-.+++..+|.+.++....+.|.+|+.+
T Consensus 180 nGia~s~d--g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 180 NGIALSTD--EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEEECTT--SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEECCC--CCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCC
T ss_conf 00010122--2127874046891479997699836202463333125776410364173899999998489989999799
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 9268999455786454566783899994799799999889
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
|+.+..+.. ... ...+...+++++|.+....+++...|
T Consensus 258 G~~l~~i~~-P~~-~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 258 GYPIGQILI-PGR-DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp SCEEEEEEC-TTG-GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEEC-CCC-CCCCCCEEEEEEEECCCCEEEEECCC
T ss_conf 959889968-875-77867504667780799889998578
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00021 Score=44.33 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=61.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 46442168888467778999999999518911237898445699999953179999999988999999999997311554
Q 000697 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1348)
Q Consensus 547 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~ 626 (1348)
++...+.+.+ ...|.-+++.++.+.......+..-.-..++..+...+. |++|.||..++.++|++.+..+
T Consensus 370 ~i~~~l~~~~--~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T d1qgra_ 370 FIKEHIKNPD--WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------DPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998602513--788899999887666432298898999999999998615-------7860899999988999999813
Q ss_pred HHHHHH-HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 888841-0258046663210699977899999999740034
Q 000697 627 EAQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 627 ~~~~~~-~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~ 666 (1348)
...... .-..+...+...+ +..|.|+..++.++..+...
T Consensus 441 ~~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~~ 480 (876)
T d1qgra_ 441 EAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_conf 11101777666799999882-69879999999878899999
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=9.5e-05 Score=46.83 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=51.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 34644216888846777899999999951891123789844569999995317999999998899999999999731155
Q 000697 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1348)
Q Consensus 546 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~ 625 (1348)
+..++.|...+ ++.+..+|-.|..+|.+.+..|..-.+.|++..+..+|. ++++++|..++-+|+.|..++
T Consensus 5 p~lv~~L~~~~--~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-------~~~~~v~~~a~~aL~~L~~~~ 75 (457)
T d1xm9a1 5 PKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-------SPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-------SSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHC-------CCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999857999--999999999999998499999999998885999999877-------999899999999999997499
Q ss_pred HHHHHHHHCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHC
Q ss_conf 48888410258046663210-6999778999999997400
Q 000697 626 TEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~al~~~i 664 (1348)
++.+....+.++...++.++ ++..++||..++-+|..+.
T Consensus 76 ~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~ 115 (457)
T d1xm9a1 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8889999987982899999843373889999999999998
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00081 Score=40.00 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99889999999999973115548888410258046663210699977899999999740034
Q 000697 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 605 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~ 666 (1348)
++.+..|..+++++|.+............-..+...+...+.|++|.||.+++.+++.+...
T Consensus 377 ~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 51378889999988766643229889899999999999861578608999999889999998
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=0.00037 Score=42.50 Aligned_cols=53 Identities=6% Similarity=-0.065 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9988999999999997311554888841025804666321069997789999999974
Q 000697 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 662 (1348)
Q Consensus 605 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~ 662 (1348)
|++|.+|..++.+|+.++...... ...+...+...++|..+.||.+++.+++.
T Consensus 98 d~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 98 DKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISV 150 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 997668999999999870246210-----18999999998647204899999998741
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00032 Score=43.00 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 998899999999999731155488884102580466632106999778999999997400
Q 000697 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 605 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i 664 (1348)
+..+..|.+++.+||.+....+. .....+...+...++|++++||.++.++||.+.
T Consensus 826 ~~~~~~~~~al~~Lge~~~~~~~----~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~ 881 (1207)
T d1u6gc_ 826 RSTDSIRLLALLSLGEVGHHIDL----SGQLELKSVILEAFSSPSEEVKSAASYALGSIS 881 (1207)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCC----CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 22599999999999999985253----115999999999808998899999999999999
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.001 Score=39.24 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=18.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 996520679963399999999999973040489
Q 000697 696 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHLK 728 (1348)
Q Consensus 696 ~ll~~~~D~sp~VR~e~~~~l~~~~~~~~~~f~ 728 (1348)
.++....|+++.||..++.+++.+....-..++
T Consensus 857 ~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~l 889 (1207)
T d1u6gc_ 857 VILEAFSSPSEEVKSAASYALGSISVGNLPEYL 889 (1207)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999980899889999999999999976288875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.0014 Score=38.22 Aligned_cols=217 Identities=10% Similarity=0.057 Sum_probs=123.8
Q ss_pred CCEEEEEECCCCCEEEEEECC-C--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 982899995899999999789-9--499998799938889627999999837999986089989999968-982999834
Q 000697 1036 KGTKTALLQPFSPIVVAADEN-E--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d-g--~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~-DG~IrIWdl 1111 (1348)
..+..-+|+|||+.||..... + .+.+.+...+... .+..+. .......| ++++..++.... ++...++..
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~--spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEE---CCCCCCEE--CCCCCEEEEEEECCCCCCEEEC
T ss_conf 84260388789998999981526751344311367506-776420---24543024--4889864676402786410000
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCC--EEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 5777850588501023578996212504899935999699998-798--2999987789603553159999981799976
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg--~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~ 1188 (1348)
......... .......... ..++..+..++..+ .+| .|...+..... ...+... ....... .+
T Consensus 113 ~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~-~~~~~~~-~~ 178 (269)
T d2hqsa1 113 DLASGQIRQ------VTDGRSNNTE----PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWE-GSQNQDA-DV 178 (269)
T ss_dssp ETTTCCEEE------CCCCSSCEEE----EEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCS-SSEEEEE-EE
T ss_pred CCCCCCCEE------EEECCCCCCC----CCCCCCCCCCEECCCCCCCCEEEEEECCCCC--CEEEECC-CCCCCCC-CC
T ss_conf 222122000------0101442114----5434554433000012687438654213310--0010001-2222343-22
Q ss_pred CCCCCEEEEEECCC-E--EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC---CCCEEEEECCCCCC
Q ss_conf 49999999996798-0--999988899702574157887887859999922999999999978---99399998688973
Q 000697 1189 QVHGGQLAAGFVDG-S--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG-~--IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~---DG~I~IWDlr~~~~ 1262 (1348)
++++..++..+.++ . +.+.|..... .... .. ........|+|+ |+.|+-.+. ...+.++++...
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-~~---~~~~~~p~~SPD--G~~i~f~s~~~~~~~l~~~~~dg~-- 248 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVL-SS---TFLDETPSLAPN--GTMVIYSSSQGMGSVLNLVSTDGR-- 248 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCC--EEEC-CC---SSSCEEEEECTT--SSEEEEEEEETTEEEEEEEETTSC--
T ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCC--CEEE-EC---CCCCCCEEECCC--CCEEEEEECCCCCCEEEEEECCCC--
T ss_conf 3454305778605880125676035644--0585-06---865445589899--999999981799847999999999--
Q ss_pred CEEEEECCCCCEEEEEEECC
Q ss_conf 16999058998699999079
Q 000697 1263 AYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1263 ~i~tl~~h~~~ItsLafspd 1282 (1348)
....+....+.+...+|+|-
T Consensus 249 ~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 249 FKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCC
T ss_conf 77998579985883782898
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00063 Score=40.83 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 46442168888467778999999999518911237898445699999953179999999988999999999997311554
Q 000697 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1348)
Q Consensus 547 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~ 626 (1348)
-+++.|++++ +..|.-++.+|+.+- ...++..+..+++ |+++++|..++.+|+.+.....
T Consensus 23 ~L~~~L~d~~--~~vR~~A~~~L~~~~-----------~~~~~~~l~~~l~-------d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 23 ELFRLLDDHN--SLKRISSARVLQLRG-----------GQDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHCCCC--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998846999--999999999998618-----------8739999999980-------9998999999999987202212
Q ss_pred HHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88884102580466632106999778999999997400
Q 000697 627 EAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 627 ~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i 664 (1348)
..... ....+-.+++|.+|.||.+++.+|+.+.
T Consensus 83 ~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~ 115 (276)
T d1oyza_ 83 CEDNV-----FNILNNMALNDKSACVRATAIESTAQRC 115 (276)
T ss_dssp THHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CCCCH-----HHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 12022-----9999999866997668999999999870
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0016 Score=37.76 Aligned_cols=150 Identities=14% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 66687505782456669999999886059012225552367134644216888846777899999999951891123789
Q 000697 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEAC 583 (1348)
Q Consensus 504 pyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~ 583 (1348)
|++...++++..+.|.-+++.++.|...........+ +....+.+..|.+++ +..|.-+|.+|++++..........
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~~~~~~ 474 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK--ALVRSITCWTLSRYAHWVVSQPPDT 474 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC--HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988751220568999999986435555787742120-355679998426998--9999999999999999866541565
Q ss_pred HHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 84456999999531799999999889999999999973115548888410258046663210699977899999999740
Q 000697 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~ 663 (1348)
+-..++..++..+. |++|.||..+|.+|+.|.+.....- .-.-..+...++.++.+....++..+.-+++++
T Consensus 475 ~~~~~l~~ll~~l~-------d~~~~V~~~a~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l 546 (888)
T d1qbkb_ 475 YLKPLMTELLKRIL-------DSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL 546 (888)
T ss_dssp HTTTHHHHHHHHHS-------SSCHHHHHHHHHHHHHHHHHHTTSS-GGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54555899998842-------8987899989999999998755311-357999999999998600377999999999999
Q ss_pred C
Q ss_conf 0
Q 000697 664 L 664 (1348)
Q Consensus 664 i 664 (1348)
+
T Consensus 547 ~ 547 (888)
T d1qbkb_ 547 A 547 (888)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.0017 Score=37.60 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 77789999999995189112378984456999999531799999999889999999999973115
Q 000697 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 560 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 624 (1348)
..|.-+++.++.+..........-.-..++..+...+. |++|.+|..++.++|++...
T Consensus 384 ~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-------DQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 88888998999988410266688878999999988733-------76205666898899999998
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0013 Score=38.38 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
Q ss_conf 77789999999995189112378984456999999531799999999889999999999973115548888410258046
Q 000697 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA 639 (1348)
Q Consensus 560 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~ 639 (1348)
..|.=++++|+.+.++....-.- .-..++..++..++ |+.|.||..+|.+||++............-..+..
T Consensus 410 ~~reaa~~alg~i~eg~~~~~~~-~l~~li~~l~~~l~-------d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 481 (888)
T d1qbkb_ 410 VVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLS-------DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 481 (888)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHTT-THHHHHHHHHHHTT-------SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999864355557877421-20355679998426-------99899999999999999998665415655455589
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6632106999778999999997400
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~al~~~i 664 (1348)
.++..+.|+.|.||.+++.||+.|+
T Consensus 482 ~ll~~l~d~~~~V~~~a~~al~~l~ 506 (888)
T d1qbkb_ 482 ELLKRILDSNKRVQEAACSAFATLE 506 (888)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9998842898789998999999999
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.38 E-value=0.00024 Score=43.85 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=64.2
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56999999531799999999889999999999973115548888410258046663210699977899999999740034
Q 000697 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 587 ~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~~i~~ 666 (1348)
..+..++..|. |++|.+|..++.+||.+... . +...|..+++|++|.||.+++.+|+.+- .
T Consensus 22 ~~~~~L~~~l~-------d~~~~vR~~a~~~L~~~~~~--~---------~~~~L~~~l~d~~~~VR~~a~~aL~~i~-~ 82 (111)
T d1te4a_ 22 EAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE--R---------AVEPLIKLLEDDSGFVRSGAARSLEQIG-G 82 (111)
T ss_dssp TTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH--H---------HHHHHHHHHHHCCTHHHHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCHH--H---------HHHHHHHHHCCCHHHHHHHHHHHHHHHC-C
T ss_conf 89999999974-------99878999999998761012--3---------2799873302303379999999999867-6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 767788998899887638999999999999965206799633999999999
Q 000697 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 717 (1348)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~ 717 (1348)
......+..+..|+++.||++++.+|.
T Consensus 83 ------------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ------------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ------------------------CCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ------------------------114999999882998999999999987
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0039 Score=35.01 Aligned_cols=269 Identities=11% Similarity=0.032 Sum_probs=116.9
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC---------------CCCEEEEEEEEECCCCEEEEEE-
Q ss_conf 289999589999999978994999987999388896279999---------------9983799998608998999996-
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP---------------DKGISKLCLVNELDVSLLLVAS- 1101 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~---------------~~~ItsI~f~ns~d~~~Lvtgs- 1101 (1348)
+....|+|+|+.+|-.. ++.+.+.+..++..++........ ...-.++-| +|||..|+...
T Consensus 116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~ 192 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAI 192 (465)
T ss_dssp CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEE
T ss_pred CCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEE--CCCCCEEEEEEE
T ss_conf 11002426785699996-132999954899658971126766044366431001230366434897--798986899995
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC----C
Q ss_conf 898299983457778505885010235789962125048999359996999987982999987789603553159----9
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----S 1177 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l~~----~ 1177 (1348)
++..|..+.+....+. ....+.. ..+...+.. .....+.++|+..+......... .
T Consensus 193 D~s~V~~~~~~~~~~~------------~~p~~~~----~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~ 252 (465)
T d1xfda1 193 NDSRVPIMELPTYTGS------------IYPTVKP----YHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (465)
T ss_dssp ECTTSCEEEECCCSSS------------SSCCCEE----EECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred CCCCCCEEECCCCCCC------------CCCEEEE----EECCCCCCC----CCCEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 3666614641234454------------4431334----530256888----9721379983689817899952576766
Q ss_pred CCCCEEEEEEECCCCCEEEEEEC-C---CEEEEEECCCCCEEEEEECCCCCCCCCE----EEEEEECCCCCCEE--EEEE
Q ss_conf 99981799976499999999967-9---8099998889970257415788788785----99999229999999--9997
Q 000697 1178 SDCSISALTASQVHGGQLAAGFV-D---GSVRLYDVRTPDMLVCSTRPHTQQVERV----VGISFQPGLDPAKI--VSAS 1247 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~-D---G~IrIwDlr~~~~~v~~~~~~~~h~~~I----~si~~sp~~~g~~L--vSgs 1247 (1348)
.+..+..+ .+.+++++++.... + ..+.++|..+++.. ..... ....+| ....|.++ |..+ +..+
T Consensus 253 ~~~y~~~~-~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~-~~~~e--~~~~wv~~~~~~p~~~~d--g~~~~fi~~s 326 (465)
T d1xfda1 253 REYYITMV-KWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHED--ESEAWLHRQNEEPVFSKD--GRKFFFIRAI 326 (465)
T ss_dssp SSEEEEEE-EESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEE--ECSSCCCCCCCCCEECTT--SCSEEEEEEE
T ss_pred CCCEEEEE-EECCCCEEEEEEECCCCCCCEEEEECCCCCCEE-EEEEE--CCCCEEECCCCCEEECCC--CCEEEEEEEE
T ss_conf 66304566-875799389999741003013799707999278-77897--278517356786057468--9805777765
Q ss_pred -CCC--CEEEEECC-----CCCCCEEEEECCCCCEEEE-EEECCCCEE-EEEECCC--CEEEEE--CCCCEE-EEEECCC
Q ss_conf -899--39999868-----8973169990589986999-990799999-9996799--099997--699268-9994557
Q 000697 1248 -QAG--DIQFLDIR-----NHKDAYLTIDAHRGSLSAL-AVHRHAPII-ASGSAKQ--LIKVFS--LEGEQL-GTIRYHH 1312 (1348)
Q Consensus 1248 -~DG--~I~IWDlr-----~~~~~i~tl~~h~~~ItsL-afspdg~~L-asgS~Dg--~I~Iwd--~~g~~l-~~i~~~h 1312 (1348)
.+| .+...++. ..+..+..+....-.|..+ .|+..+..+ .++..++ .-.+|. ++|... ..+.. .
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~-~ 405 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC-D 405 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST-T
T ss_pred EECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECC-C
T ss_conf 431667168998315666678862698226992199778983899999999968999826899997789986055314-4
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 8645456678389999479979999988
Q 000697 1313 PSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1313 ~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
. .......++.|+|++.+++....
T Consensus 406 ~----~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 406 L----VENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp S----SSSCCCCEEEECTTSSEEEEECC
T ss_pred C----CCCCCEEEEEECCCCCEEEEEEE
T ss_conf 6----78898799999999999999800
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.22 E-value=0.0051 Score=34.13 Aligned_cols=215 Identities=8% Similarity=-0.032 Sum_probs=86.1
Q ss_pred EEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCE
Q ss_conf 999958999999997-8994999987999388896279999998379999860899899999689829998345777850
Q 000697 1040 TALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1040 sl~fspdg~~Latgs-~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~ 1118 (1348)
...|++.+..|.-.+ ..+.|..||.++++. ..+... ..+.++.+ ..++.+++ ++.+ .+.++|..+ ++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~----~~~~~i~~--~~dg~l~v-a~~~-gl~~~d~~t--g~~ 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALP----FMGSALAK--ISDSKQLI-ASDD-GLFLRDTAT--GVL 90 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECS----SCEEEEEE--EETTEEEE-EETT-EEEEEETTT--CCE
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEE-EEEECC----CCCEEEEE--ECCCCEEE-EEEC-CCEEEECCC--CEE
T ss_conf 8759899999999987899999998998959-999899----98179899--65998899-9737-638950464--513
Q ss_pred EEEEEEECCCCCCC--CCCCCCEEEEEECCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 58850102357899--62125048999359996999987----9829999877896035531599999817999764999
Q 000697 1119 KLVTAFSSIQGHKP--GVRCSNVVVDWQQQSGYLYASGE----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~--~V~s~~~~v~ws~~~~~Llsgg~----Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+.. ........ .... +...+++...++... .+.-.+|....++ ....... ... -..+ .+++++
T Consensus 91 ~~l---~~~~~~~~~~~~nd----~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~-~~~-~Ng~-~~s~d~ 159 (295)
T d2ghsa1 91 TLH---AELESDLPGNRSND----GRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFAD-ISI-PNSI-CFSPDG 159 (295)
T ss_dssp EEE---ECSSTTCTTEEEEE----EEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEE-ESS-EEEE-EECTTS
T ss_pred EEE---EEEECCCCCCCCEE----EEECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEEC-CCC-CCEE-EECCCC
T ss_conf 578---66404787661013----57979999988742643133330576622996-8998650-687-6402-465877
Q ss_pred CE-EEEEECCCEEEEEECCCCCEE----EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEE
Q ss_conf 99-999967980999988899702----5741578878878599999229999999999789939999868897316999
Q 000697 1193 GQ-LAAGFVDGSVRLYDVRTPDML----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267 (1348)
Q Consensus 1193 ~~-LvsGs~DG~IrIwDlr~~~~~----v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl 1267 (1348)
+. +++.+..+.|..|++...... ...+....+..+....+++..+ |++.++.-..|.|..||.. + +.+..+
T Consensus 160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~--GnlWva~~~~g~V~~~dp~-G-~~~~~i 235 (295)
T d2ghsa1 160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYDTD-G-NHIARY 235 (295)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEECTT-C-CEEEEE
T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCC--CCEEEEEECCCCEEEECCC-C-CEEEEE
T ss_conf 66898515663246764535555324535788416755566632678699--9989532078846885699-9-286686
Q ss_pred ECCCCCEEEEEEE
Q ss_conf 0589986999990
Q 000697 1268 DAHRGSLSALAVH 1280 (1348)
Q Consensus 1268 ~~h~~~ItsLafs 1280 (1348)
......+++++|-
T Consensus 236 ~lP~~~~T~~~FG 248 (295)
T d2ghsa1 236 EVPGKQTTCPAFI 248 (295)
T ss_dssp ECSCSBEEEEEEE
T ss_pred CCCCCCEEEEEEE
T ss_conf 3899852798982
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.08 E-value=0.0005 Score=41.53 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 13464421688884677789999999995189112378984456999999531799999999889999999999973115
Q 000697 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 545 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 624 (1348)
...++..|.+.+ +..|..++.+|+.+. .......+...|+ |++|.||..++-+||++..
T Consensus 24 ~~~L~~~l~d~~--~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~VR~~a~~aL~~i~~- 82 (111)
T d1te4a_ 24 FEPLLESLSNED--WRIRGAAAWIIGNFQ-----------DERAVEPLIKLLE-------DDSGFVRSGAARSLEQIGG- 82 (111)
T ss_dssp HHHHHHGGGCSC--HHHHHHHHHHHGGGC-----------SHHHHHHHHHHHH-------HCCTHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHCC-
T ss_conf 999999974998--789999999987610-----------1232799873302-------3033799999999998676-
Q ss_pred CHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 54888841025804666321069997789999999974
Q 000697 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 662 (1348)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~~ 662 (1348)
+. +...+..+++|++|.||.+++.+|.+
T Consensus 83 -~~---------~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 83 -ER---------VRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp -HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -CC---------HHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf -11---------49999998829989999999999876
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.21 E-value=0.011 Score=31.85 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=7.2
Q ss_pred HHHHCCCCCHHHHHHHH
Q ss_conf 63210699977899999
Q 000697 641 YVPLLSEPQPEVRASAV 657 (1348)
Q Consensus 641 l~~ll~D~sP~VRaa~v 657 (1348)
+..+++|+.++||.+++
T Consensus 143 L~~L~~D~d~~VR~~aA 159 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVA 159 (233)
T ss_dssp GGGTTTCSCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH
T ss_conf 99883489789999999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.13 E-value=0.028 Score=28.70 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=118.7
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-C---CEEEEEECCCCC
Q ss_conf 99589--99999997899499998799938889627999999837999986089989999968-9---829998345777
Q 000697 1042 LLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-N---GNIRIWKDYDQK 1115 (1348)
Q Consensus 1042 ~fspd--g~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~-D---G~IrIWdl~~~~ 1115 (1348)
..+|+ |+.++-.+ +|.|.+.|+.+++.. .+..+. ..+....| +|||+.|+-... + ....||......
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~---~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNL---GVINNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSS---SEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCC---CCCCCEEE--CCCCCEEEEEEEECCCCCCEEEEEEEECC
T ss_conf 258887999999990-996899989999879-976699---85267798--78999899998628987722899998259
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 8505885010235789962125048999359996999987------9829999877896035531599999817999764
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~------Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s 1189 (1348)
+..+.++.. .+.............|++++..++.... ...+...+..... . ...... . .... +..
T Consensus 78 g~~~~lt~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~-~~~~-~~~ 148 (281)
T d1k32a2 78 GEIKRITYF---SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-F-VPLNLG--P-ATHI-LFA 148 (281)
T ss_dssp TEEEECCCC---CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-E-EECCSC--S-CSEE-EEE
T ss_pred CCEEEEEEC---CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCE-E-EEECCC--C-CCEE-EEC
T ss_conf 952886416---88754764443431027988779999713787652024651587760-6-880178--6-5234-646
Q ss_pred CCCCEEEEEECCC-----------EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCC--CEEEEE
Q ss_conf 9999999996798-----------099998889970257415788788785999992299999999997899--399998
Q 000697 1190 VHGGQLAAGFVDG-----------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG--DIQFLD 1256 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG-----------~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG--~I~IWD 1256 (1348)
.++..+.....+. ........... ..... . .........+.++ ..+.....++ .|.++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d 220 (281)
T d1k32a2 149 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIV-D---MSTHVSSPVIVGH---RIYFITDIDGFGQIYSTD 220 (281)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEE-C---CSSCCEEEEEETT---EEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCC-EEECC-C---CCCCCCEEEEECC---CCCEECCCCCCCCEEEEE
T ss_conf 99849886204664044420588620444113661-22404-7---7666421331035---320001134552128996
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf 688973169990589986999990799999999679909999769926899945
Q 000697 1257 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1257 lr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~g~~l~~i~~ 1310 (1348)
+... ....+..+. ......|+|+|..|+.. .++.|+++|+++.....+..
T Consensus 221 ~~g~--~~~~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 221 LDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp TTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred CCCC--CEEEEECCC-CCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEECC
T ss_conf 8999--659810589-86443286798999998-59999999899998788425
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.95 E-value=0.071 Score=25.78 Aligned_cols=234 Identities=14% Similarity=0.248 Sum_probs=139.6
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCE
Q ss_conf 89999589999999978994999987999388896279999998379999860899899999689829998345777850
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~DG~IrIWdl~~~~~~~ 1118 (1348)
.+.-.||..+.||.-+ ..++.|+|+++.++++.+.... .|.-=.|+ +.+.|+..+.. .|.-|++.... .+
T Consensus 66 dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----~VvfWkWi---s~~~L~lVT~t-aVYHW~~~g~s-~P 135 (327)
T d1utca2 66 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWI---SLNTVALVTDN-AVYHWSMEGES-QP 135 (327)
T ss_dssp SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEES---SSSEEEEECSS-EEEEEESSSSC-CC
T ss_pred HHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCC----CCEEEEEC---CCCEEEEECCC-CEEEECCCCCC-CC
T ss_conf 6653088875799962-8868998446822111587688----85799944---79889999188-16997356999-85
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE---C----CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 588501023578996212504899935999699998---7----982999987789603553159999981799976499
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---E----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg---~----Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~d 1191 (1348)
..+ +..|..-..+-.....-+++.+.++..| . .|.+.+|..++.. -+.+.+|... ...+ ..+
T Consensus 136 ~k~-----fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~-F~~~---~~~ 204 (327)
T d1utca2 136 VKM-----FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAAS-FAQF---KME 204 (327)
T ss_dssp EEE-----EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEE-EEEE---CCT
T ss_pred HHH-----HHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCCCEEEE-EEEE---ECC
T ss_conf 266-----2321012486389989899998899995713788305888899802286--7523203465-6888---707
Q ss_pred C-----CEEEEE---ECCCEEEEEECCCCCE--------EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 9-----999999---6798099998889970--------25741578878878599999229999999999789939999
Q 000697 1192 G-----GQLAAG---FVDGSVRLYDVRTPDM--------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1192 g-----~~LvsG---s~DG~IrIwDlr~~~~--------~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IW 1255 (1348)
| .+|+.+ ...+.+++.++..... .+..+-......+--.++..++. ...+..-+.-|.+.+|
T Consensus 205 g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k--ygiiyviTK~G~i~ly 282 (327)
T d1utca2 205 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK--HDVVFLITKYGYIHLY 282 (327)
T ss_dssp TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT--TTEEEEEETTSEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC--CCEEEEEECCCEEEEE
T ss_conf 99887309999987898747999986887557888753268877796346884779996433--7999999667589999
Q ss_pred ECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 86889731699905899869999907999999996799099
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1296 (1348)
Q Consensus 1256 Dlr~~~~~i~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~ 1296 (1348)
|+.++ .++..-+.....|...+-+.+..-+++...+|.|.
T Consensus 283 DleTg-t~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 283 DLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTTC-CEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ECCCC-CEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 75666-28999404788448962678886089987897699
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.78 E-value=0.078 Score=25.48 Aligned_cols=223 Identities=8% Similarity=0.066 Sum_probs=135.2
Q ss_pred EEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 799998608-9989999968982999834577785058850102357899621250489993599969999879829999
Q 000697 1084 SKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1348)
Q Consensus 1084 tsI~f~ns~-d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~Dg~I~IW 1162 (1348)
.+..| .+ ++.+..+--..+.|..|+..+ +..... .+ ...+.+ +.+..+ +.+++++.+| +..+
T Consensus 21 Egp~w--d~~~~~l~wvDi~~~~I~r~d~~~--g~~~~~----~~---~~~~~~----i~~~~d-g~l~va~~~g-l~~~ 83 (295)
T d2ghsa1 21 EGPTF--DPASGTAWWFNILERELHELHLAS--GRKTVH----AL---PFMGSA----LAKISD-SKQLIASDDG-LFLR 83 (295)
T ss_dssp EEEEE--ETTTTEEEEEEGGGTEEEEEETTT--TEEEEE----EC---SSCEEE----EEEEET-TEEEEEETTE-EEEE
T ss_pred ECCEE--ECCCCEEEEEECCCCEEEEEECCC--CEEEEE----EC---CCCCEE----EEEECC-CCEEEEEECC-CEEE
T ss_conf 58759--899999999987899999998998--959999----89---998179----899659-9889997376-3895
Q ss_pred ECCCCCEEEEEECC---CCCCCEEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 87789603553159---9999817999764999999999679----8099998889970257415788788785999992
Q 000697 1163 DLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1163 Dl~t~~~~i~~l~~---~~~~~VtsL~~~s~dg~~LvsGs~D----G~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~s 1235 (1348)
|..+++ ....... .....++.+ ...++|++.++...+ +.-.+|....++ ........ ..-..+.|+
T Consensus 84 d~~tg~-~~~l~~~~~~~~~~~~nd~-~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~----~~~Ng~~~s 156 (295)
T d2ghsa1 84 DTATGV-LTLHAELESDLPGNRSNDG-RMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADI----SIPNSICFS 156 (295)
T ss_dssp ETTTCC-EEEEECSSTTCTTEEEEEE-EECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEE----SSEEEEEEC
T ss_pred ECCCCE-EEEEEEEECCCCCCCCEEE-EECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEECC----CCCCEEEEC
T ss_conf 046451-3578664047876610135-7979999988742643133330576622996-89986506----876402465
Q ss_pred CCCCCCE-EEEEECCCCEEEEECCCCC-----CCE--EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 2999999-9999789939999868897-----316--9990589986999990799999999679909999769926899
Q 000697 1236 PGLDPAK-IVSASQAGDIQFLDIRNHK-----DAY--LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~-LvSgs~DG~I~IWDlr~~~-----~~i--~tl~~h~~~ItsLafspdg~~LasgS~Dg~I~Iwd~~g~~l~~ 1307 (1348)
++ ++. +++-+..+.|..+++.... +.. ..+....+....+++..+|.+.++.-..+.|..|+.+|+.+..
T Consensus 157 ~d--~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~ 234 (295)
T d2ghsa1 157 PD--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIAR 234 (295)
T ss_dssp TT--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEE
T ss_pred CC--CCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCEEEE
T ss_conf 87--7668985156632467645355553245357884167555666326786999989532078846885699928668
Q ss_pred EECCCCCCCCCCCCCEEEEEEE-CCCCEE-EEEEC
Q ss_conf 9455786454566783899994-799799-99988
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFH-PYQVLL-AAGSA 1340 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafs-pdg~~L-atgs~ 1340 (1348)
+.. .. ..+++++|- ++...| +|.+.
T Consensus 235 i~l-P~-------~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 235 YEV-PG-------KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEC-SC-------SBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CC-------CCEEEEEEECCCCCEEEEEECC
T ss_conf 638-99-------8527989828999999999787
|
| >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Caspase-like superfamily: Caspase-like family: Caspase catalytic domain domain: Caspase-9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.083 Score=25.29 Aligned_cols=154 Identities=9% Similarity=-0.009 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH-HCCC-CCCEEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 1459999999999999985333452001599988999999986-0269-9950999983789898888870898418987
Q 000697 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTC-RRYA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYT 219 (1348)
Q Consensus 142 ~~~~~~~i~~~l~~~y~~~~~~~~~~~~~~p~~~~~~~~~~~~-r~~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~ 219 (1348)
+.+=.+.|.+.|+ .+ .-.+....|.+.+++++....+ ++.. ..+.++|.|-|||+.....+....++....
T Consensus 44 a~~Da~~l~~~l~----~l--GF~V~~~~nlt~~~~~~~l~~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~- 116 (277)
T d1nw9b_ 44 SNIDCEKLRRRFS----SL--HFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDG- 116 (277)
T ss_dssp HHHHHHHHHHHHH----HT--TEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTS-
T ss_pred CHHHHHHHHHHHH----HC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-
T ss_conf 1999999999998----88--9989995189999999999986663146888799999478764456454576137766-
Q ss_pred EEEEC-------CHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCC---------------------------CCCCCC
Q ss_conf 03203-------44766532199969999299430689999850037---------------------------888999
Q 000697 220 QYIPL-------PISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW---------------------------GASNYS 265 (1348)
Q Consensus 220 ~y~p~-------~~~~l~~~~~~p~~~v~dc~~ag~~~~~~~~~~~~---------------------------~~~~~~ 265 (1348)
+.+++ ....+..-.+.|.+||+||...|.+-......... ......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (277)
T d1nw9b_ 117 CPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSL 196 (277)
T ss_dssp CEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf 50027889987677663541457379998624687656663113567543444444344432100012344333441015
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHH
Q ss_conf 99765079985288687999999990344311403699
Q 000697 266 GSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPIT 303 (1348)
Q Consensus 266 ~~~~~~~~~~ac~~~e~lp~~~~lP~D~ftscl~tP~~ 303 (1348)
+...|.+...||..+...-.+++ .--.||..|..-++
T Consensus 197 p~~~d~~i~~st~~g~~a~~~~~-~gS~f~~~L~~~l~ 233 (277)
T d1nw9b_ 197 PTPSDIFVSYSTFPGFVSWRDPK-SGSWYVETLDDIFE 233 (277)
T ss_dssp CCSCSEEEEEECCCCBSSTTCTT-SCBHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHHHH
T ss_conf 77665069971565348744898-89899999999999
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.034 Score=28.09 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHCHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 44569999995317999---999998899999999999731155488884102580466632106999778999999997
Q 000697 585 EAGLIHVCLKHLQGSMP---NDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 585 ~~~~~~~~~~~l~~~~~---~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~al~ 661 (1348)
+-.++.++.++|....+ .+...+|.+-+=+|+=+|.|+..+|++|.+.-+.++-+.+..+++++.|+||.+|+.|++
T Consensus 390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 469 (477)
T d1ho8a_ 390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 469 (477)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 54899999999862044555545788233313350077999978533679988283999998864999799999999999
Q ss_pred HHCC
Q ss_conf 4003
Q 000697 662 TLLD 665 (1348)
Q Consensus 662 ~~i~ 665 (1348)
.++.
T Consensus 470 klm~ 473 (477)
T d1ho8a_ 470 AIIG 473 (477)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.17 E-value=0.15 Score=23.34 Aligned_cols=289 Identities=8% Similarity=0.090 Sum_probs=137.7
Q ss_pred CCCCCCCCC---CCEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEEEE--EE-CCCCCCCCEEEEEEE
Q ss_conf 111136789---9828999958999999997899-----------499998799938889--62-799999983799998
Q 000697 1027 IACWDTRFE---KGTKTALLQPFSPIVVAADENE-----------RIKIWNYEEDTLLNS--FD-NHDFPDKGISKLCLV 1089 (1348)
Q Consensus 1027 i~~Wd~~~~---~~I~sl~fspdg~~Latgs~dg-----------~I~IWd~~t~~~i~~--l~-~h~~~~~~ItsI~f~ 1089 (1348)
...|..... .+........+++.++.|+.+. .+.+||..+++.... .. .+. ....+..+
T Consensus 8 ~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~---~~~~~~~~- 83 (387)
T d1k3ia3 8 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD---MFCPGISM- 83 (387)
T ss_dssp SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC---CSSCEEEE-
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCC---CCEEEEEE-
T ss_conf 87167868898610178999259999999840576667887760689999888896866677898744---52568999-
Q ss_pred EECCCCEEEEEECC-CEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC------CEEEEE
Q ss_conf 60899899999689-82999834577785058850102357899621250489993599969999879------829999
Q 000697 1090 NELDVSLLLVASCN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------SSIMLW 1162 (1348)
Q Consensus 1090 ns~d~~~Lvtgs~D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~D------g~I~IW 1162 (1348)
..++.+++.|+.+ ..+.+||..+ ..... .......-.. .......++..++.+|.+ ..+.+|
T Consensus 84 -~~~g~i~v~Gg~~~~~~~~yd~~~--~~w~~------~~~~~~~r~~--~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 84 -DGNGQIVVTGGNDAKKTSLYDSSS--DSWIP------GPDMQVARGY--QSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp -CTTSCEEEECSSSTTCEEEEEGGG--TEEEE------CCCCSSCCSS--CEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred -ECCCCEEEEECCCCCCEEEECCCC--CCCCC------CCCCCCCCCC--CCEEEECCCCEEEECCCCCCCCCCCEEEEE
T ss_conf -468868986368886216756755--74421------5656642101--303553178266521366333543205663
Q ss_pred ECCCCCEEEEEECCC---------------CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCCC
Q ss_conf 877896035531599---------------9998179997649999999996798099998889970257415--78878
Q 000697 1163 DLEKEQQMVNPIPSS---------------SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQ 1225 (1348)
Q Consensus 1163 Dl~t~~~~i~~l~~~---------------~~~~VtsL~~~s~dg~~LvsGs~DG~IrIwDlr~~~~~v~~~~--~~~~h 1225 (1348)
|..+.+ - ..+... .+. -..+ +...++..++.+..++.+..+|............ ....+
T Consensus 153 d~~~~~-W-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (387)
T d1k3ia3 153 SPSSKT-W-TSLPNAKVNPMLTADKQGLYRSDN-HAWL-FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 228 (387)
T ss_dssp ETTTTE-E-EEETTSCSGGGCCCCTTGGGTTTC-SCCE-EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred CCCCCC-E-EECCCCCCCCCCCCCCCCEEECCC-EEEE-EEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCC
T ss_conf 488895-5-115887644311346651365042-2699-97079877874686774781486667173166556676657
Q ss_pred --CCCEEEEEEECCCCCCEEEEEECCC--------CEEEEECCCCCCCEEEEEC-----CCCCEEEEEEECCCCEEEEEE
Q ss_conf --8785999992299999999997899--------3999986889731699905-----899869999907999999996
Q 000697 1226 --VERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA-----HRGSLSALAVHRHAPIIASGS 1290 (1348)
Q Consensus 1226 --~~~I~si~~sp~~~g~~LvSgs~DG--------~I~IWDlr~~~~~i~tl~~-----h~~~ItsLafspdg~~LasgS 1290 (1348)
...-.++.+... +++.++.|+... ...+.+............. ....-.+....+++++++.|+
T Consensus 229 ~~~~~~~~~~~~~~-~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG 307 (387)
T d1k3ia3 229 PDAMCGNAVMYDAV-KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307 (387)
T ss_dssp CCCBTCEEEEEETT-TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCCEEEEECC-CCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECC
T ss_conf 63222637886135-88247887536788775210000011111356788406036656654343356605874999888
Q ss_pred CC-----------CCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 79-----------909999769926899945578645456678389999479979999988
Q 000697 1291 AK-----------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1291 ~D-----------g~I~Iwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.+ ..+.+||.....-..+.. .. ..+... ......+++++++.|+.
T Consensus 308 ~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~-~~---~~R~~H-s~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 308 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP-NS---IVRVYH-SISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECCC-CS---SCCCTT-EEEEECTTSCEEEEECC
T ss_pred CCCCCCCCCCCEECEEEEEECCCCEEEECCC-CC---CCCCCE-EEEEECCCCEEEEEECC
T ss_conf 4567668899470107989799991887889-99---755312-79999889999999698
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.90 E-value=0.062 Score=26.19 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=11.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 663210699977899999999
Q 000697 640 IYVPLLSEPQPEVRASAVFSL 660 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~al 660 (1348)
.+..+++|+.|+||.+++-.|
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L 186 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL 186 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHC
T ss_conf 999870599889999999845
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.19 Score=22.71 Aligned_cols=235 Identities=8% Similarity=0.045 Sum_probs=127.1
Q ss_pred CEEEEEECCCCEEEEECCCCC-----EEEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEEECCCCCCCEEEE
Q ss_conf 999999789949999879993-----88896279999998379999860899899999-689829998345777850588
Q 000697 1048 PIVVAADENERIKIWNYEEDT-----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQKLV 1121 (1348)
Q Consensus 1048 ~~Latgs~dg~I~IWd~~t~~-----~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtg-s~DG~IrIWdl~~~~~~~~lv 1121 (1348)
.+|+.+. .+.|+-.+++... ....+..+. ..+.+++| ....+.++-. ..++.|+..++.. +..+.+
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~---~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g--~~~~~v 73 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPA---KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHG--GEPTTI 73 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEE---EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSS--CCCEEE
T ss_pred CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCC---CCEEEEEE--EECCCEEEEEECCCCEEEEEECCC--CCCEEE
T ss_conf 8999948-982999978886655445310012687---75799999--858999999989999199997665--872898
Q ss_pred EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 501023578996212504899935999699998-7982999987789603553159999981799976499999999967
Q 000697 1122 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1200 (1348)
Q Consensus 1122 s~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs~ 1200 (1348)
+........+ +++...++.++.+. ..+.|.+.++.... +...+..... ....++..+..+.++.+-..
T Consensus 74 -----~~~~~~~p~~----iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~-~p~~l~vdp~~g~ly~t~~~ 142 (263)
T d1npea_ 74 -----IRQDLGSPEG----IALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLV-NPRGIVTDPVRGNLYWTDWN 142 (263)
T ss_dssp -----ECTTCCCEEE----EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCS-SEEEEEEETTTTEEEEEECC
T ss_pred -----EEECCCCCCE----EEEECCCCEEEEECCCCCEEEEEECCCCE-EEEEECCCCC-CCCEEEEECCCCCEEEEECC
T ss_conf -----8701264207----99963688688842678979988058816-7777125666-87279992566927995348
Q ss_pred CC--EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEE-ECCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 98--09999888997025741578878878599999229999999999-7899399998688973169990589986999
Q 000697 1201 DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1277 (1348)
Q Consensus 1201 DG--~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSg-s~DG~I~IWDlr~~~~~i~tl~~h~~~ItsL 1277 (1348)
.+ .|.-.++..... ..... ..-....++++.+. ++.|+.. ...+.|...++... .....+.+. ....++
T Consensus 143 ~~~~~I~r~~~dG~~~-~~i~~---~~~~~P~glaiD~~--~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~-~~P~~l 214 (263)
T d1npea_ 143 RDNPKIETSHMDGTNR-RILAQ---DNLGLPNGLTFDAF--SSQLCWVDAGTHRAECLNPAQP-GRRKVLEGL-QYPFAV 214 (263)
T ss_dssp SSSCEEEEEETTSCCC-EEEEC---TTCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTEE-EEEEEEECC-CSEEEE
T ss_pred CCCCEEEEECCCCCCC-EEEEE---ECCCCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCC-CEEEEECCC-CCCEEE
T ss_conf 9976899966789972-36553---03555530799504--7589999289999999999999-769998899-986899
Q ss_pred EEECCCCEEEEEECCCCEEEEEC-CCCEEEEEEC
Q ss_conf 99079999999967990999976-9926899945
Q 000697 1278 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1278 afspdg~~LasgS~Dg~I~Iwd~-~g~~l~~i~~ 1310 (1348)
++. .+.++.+-...+.|...+. .++.+..+..
T Consensus 215 av~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~ 247 (263)
T d1npea_ 215 TSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (263)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EEE-CCEEEEEECCCCEEEEEECCCCCCCEEECC
T ss_conf 999-999999999999799998989951069898
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.14 E-value=0.31 Score=21.05 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=113.0
Q ss_pred CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCC
Q ss_conf 828999958999999997-89949999879993888962799999983799998608998999-9968982999834577
Q 000697 1037 GTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs-~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lv-tgs~DG~IrIWdl~~~ 1114 (1348)
.+..++|+..++.+.-++ .++.|+..++........+.... ..+.++++ ..-++.|+ +-...+.|.+.++..
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~---~~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg- 110 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDG- 110 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTS-
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECC---CCCCEEEE--ECCCCEEEEECCCCCEEEEEECCC-
T ss_conf 579999985899999998999919999766587289887012---64207999--636886888426789799880588-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC---CEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 785058850102357899621250489993599969999879---82999987789603553159999981799976499
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~D---g~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~d 1191 (1348)
...+.+ .......... ++..+..+.++..... +.|..-++.... ........-. ...+++....+
T Consensus 111 -~~~~~l-----~~~~l~~p~~----l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~-~P~glaiD~~~ 178 (263)
T d1npea_ 111 -TQRRVL-----FDTGLVNPRG----IVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLG-LPNGLTFDAFS 178 (263)
T ss_dssp -CSCEEE-----ECSSCSSEEE----EEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCS-CEEEEEEETTT
T ss_pred -CEEEEE-----ECCCCCCCCE----EEEECCCCCEEEEECCCCCCEEEEECCCCCC-CEEEEEECCC-CCCEEEEEECC
T ss_conf -167777-----1256668727----9992566927995348997689996678997-2365530355-55307995047
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-CC
Q ss_conf 99999996798099998889970257415788788785999992299999999997899399998688973169990-58
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AH 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG~IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~LvSgs~DG~I~IWDlr~~~~~i~tl~-~h 1270 (1348)
+.+.++-...+.|...|..... ........ ....++++. + +...++-...+.|...|...+ +....+. ..
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~----~~P~~lav~-~--~~lYwtd~~~~~I~~~~~~~g-~~~~~~~~~~ 249 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPG-RRKVLEGL----QYPFAVTSY-G--KNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHK 249 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEE-EEEEEECC----CSEEEEEEE-T--TEEEEEETTTTEEEEEETTTT-EEEEEECCSS
T ss_pred CEEEEEECCCCEEEEEECCCCC-EEEEECCC----CCCEEEEEE-C--CEEEEEECCCCEEEEEECCCC-CCCEEECCCC
T ss_conf 5899992899999999999997-69998899----986899999-9--999999999997999989899-5106989888
Q ss_pred CCCEEEEEEEC
Q ss_conf 99869999907
Q 000697 1271 RGSLSALAVHR 1281 (1348)
Q Consensus 1271 ~~~ItsLafsp 1281 (1348)
.....++++.+
T Consensus 250 ~~~~~gi~v~~ 260 (263)
T d1npea_ 250 QTRLYGITIAL 260 (263)
T ss_dssp CCCCCCEEEEC
T ss_pred CCCCCEEEEEC
T ss_conf 99856589838
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.94 E-value=0.38 Score=20.44 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99778999999997400347677889988998876389999999-999999652067996339999999999997
Q 000697 648 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEI-SIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 648 ~sP~VRaa~v~al~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~ 721 (1348)
..|.|=|-|++=+|.|+..++ ... ...|. ..=..++.+.++..|.||+|++.++++++.
T Consensus 414 ~D~~~lAVAc~DiGefvr~~P--------------~gr-~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 414 QEKIIIQVALNDITHVVELLP--------------ESI-DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------THH-HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHHHCC--------------CHH-HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 882333133500779999785--------------336-799882839999988649997999999999999998
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.19 E-value=0.42 Score=20.10 Aligned_cols=65 Identities=5% Similarity=0.003 Sum_probs=28.1
Q ss_pred ECC--CCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC-C-----CEEEEE
Q ss_conf 089--98999996898299983457778505885010235789962125048999359996999987-9-----829999
Q 000697 1091 ELD--VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V-----SSIMLW 1162 (1348)
Q Consensus 1091 s~d--~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llsgg~-D-----g~I~IW 1162 (1348)
+|| |+.++-.+ +|.|.+.++.. ++.+. +..+...... ..|+|++..|+-... + ..|.++
T Consensus 7 sPdi~G~~v~f~~-~~dl~~~d~~~--g~~~~------Lt~~~~~~~~----p~~SPDG~~iaf~~~~~~~~~~~~i~~~ 73 (281)
T d1k32a2 7 NPDIHGDRIIFVC-CDDLWEHDLKS--GSTRK------IVSNLGVINN----ARFFPDGRKIAIRVMRGSSLNTADLYFY 73 (281)
T ss_dssp EEEEETTEEEEEE-TTEEEEEETTT--CCEEE------EECSSSEEEE----EEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred CCCCCCCEEEEEE-CCCEEEEECCC--CCEEE------EECCCCCCCC----EEECCCCCEEEEEEEECCCCCCEEEEEE
T ss_conf 8887999999990-99689998999--98799------7669985267----7987899989999862898772289999
Q ss_pred ECCCCC
Q ss_conf 877896
Q 000697 1163 DLEKEQ 1168 (1348)
Q Consensus 1163 Dl~t~~ 1168 (1348)
+...+.
T Consensus 74 ~~~~g~ 79 (281)
T d1k32a2 74 NGENGE 79 (281)
T ss_dssp ETTTTE
T ss_pred EECCCC
T ss_conf 825995
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=0.5 Score=19.53 Aligned_cols=236 Identities=10% Similarity=0.089 Sum_probs=135.1
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCC--CEEEEEEEE
Q ss_conf 99999789949999879993888962799999983799998608998999996-898299983457778--505885010
Q 000697 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKD--KQKLVTAFS 1125 (1348)
Q Consensus 1049 ~Latgs~dg~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs-~DG~IrIWdl~~~~~--~~~lvs~~~ 1125 (1348)
+|+.+. ...|+-.++++......+. .. ..+.++.| ....+.++-.. ..+.|.-.++..... ..+.+
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~---~~~~~id~--d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~---- 71 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NL---RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---- 71 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SC---SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEE----
T ss_pred EEEEEC-CCEEEEEECCCCCCEEEEC-CC---CCEEEEEE--EECCCEEEEEECCCCEEEEEEECCCCCCCCEEEE----
T ss_conf 999978-7718999899985266417-99---85599999--8089999999997997999993578887614899----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEE-CCCE
Q ss_conf 23578996212504899935999699998-798299998778960355315999998179997649999999996-7980
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGS 1203 (1348)
Q Consensus 1126 ~l~~h~~~V~s~~~~v~ws~~~~~Llsgg-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~ 1203 (1348)
+........+ +++...++.++.+. ..+.|.+.++.... ....+...... ...++..+..+.++++.. ..+.
T Consensus 72 -~~~~~~~p~g----lAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~-P~~l~vd~~~g~ly~~~~~~~~~ 144 (266)
T d1ijqa1 72 -ISRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSK-PRAIVVDPVHGFMYWTDWGTPAK 144 (266)
T ss_dssp -ECSSCSCCCE----EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCC-EEEEEEETTTTEEEEEECSSSCE
T ss_pred -EECCCCCCCE----EEEEECCCEEEEEECCCCEEEEEECCCCE-EEEEECCCCCC-CCEEEEECCCCEEEEECCCCCCC
T ss_conf -8489998546----89864265289995489999857648953-78887279988-33699980039488712699730
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEE-EEECCCCEEEEECCCCCCCEEEEECC--CCCEEEEEEE
Q ss_conf 99998889970257415788788785999992299999999-99789939999868897316999058--9986999990
Q 000697 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVH 1280 (1348)
Q Consensus 1204 IrIwDlr~~~~~v~~~~~~~~h~~~I~si~~sp~~~g~~Lv-Sgs~DG~I~IWDlr~~~~~i~tl~~h--~~~ItsLafs 1280 (1348)
|.-.++.... ....... .-....++++.+. +..|+ +-...+.|...++... ......... .....++++.
T Consensus 145 I~r~~~dGs~-~~~l~~~---~~~~p~gl~iD~~--~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~ 217 (266)
T d1ijqa1 145 IKKGGLNGVD-IYSLVTE---NIQWPNGITLDLL--SGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF 217 (266)
T ss_dssp EEEEETTSCC-EEEEECS---SCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE
T ss_pred EEEECCCCCC-EECCCCC---CCCEEEEEEEECC--CCEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCCCCEEEEEE
T ss_conf 2686368883-4412004---5320169986133--5699995289679999989999-779999389855664799998
Q ss_pred CCCCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 7999999996799099997-69926899945
Q 000697 1281 RHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1281 pdg~~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
. +.++.+-..++.|...+ .++.....+..
T Consensus 218 ~-~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 218 E-DKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred C-CEEEEEECCCCEEEEEECCCCCCEEEEEC
T ss_conf 9-99999989999699999989961599776
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.95 E-value=0.55 Score=19.24 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 99999996799099997-69926899945
Q 000697 1283 APIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1283 g~~LasgS~Dg~I~Iwd-~~g~~l~~i~~ 1310 (1348)
+.++++|+.|+.++.+| .+|+.+-++..
T Consensus 475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 99799977899699999999868789989
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=83.99 E-value=0.67 Score=18.62 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=115.2
Q ss_pred EEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECC------CEEEEEEC
Q ss_conf 899995899999999789-94999987999388896279999998379999860899899999689------82999834
Q 000697 1039 KTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWKD 1111 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~d-g~I~IWd~~t~~~i~~l~~h~~~~~~ItsI~f~ns~d~~~Lvtgs~D------G~IrIWdl 1111 (1348)
....+.+++.+++.|+.+ ..+.+||..+......-.... + ..-.+.+. -.|+.+++.|+.+ ..+.+||.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~-r~~~~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-A-RGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-C-CSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCC-C-CCCCCEEE--ECCCCEEEECCCCCCCCCCCEEEEECC
T ss_conf 6899946886898636888621675675574421565664-2-10130355--317826652136633354320566348
Q ss_pred CCCCCCEEEEEEEECCC----CCCCCCCCCCEEEEE-ECCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCC-----CC
Q ss_conf 57778505885010235----789962125048999-3599969999879829999877896035531--599-----99
Q 000697 1112 YDQKDKQKLVTAFSSIQ----GHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQMVNPI--PSS-----SD 1179 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~----~h~~~V~s~~~~v~w-s~~~~~Llsgg~Dg~I~IWDl~t~~~~i~~l--~~~-----~~ 1179 (1348)
.+ .+........... .+...+........+ .+++..+..++..+.+.++|..+.. ....- ... ..
T Consensus 155 ~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 155 SS--KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp TT--TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCC
T ss_pred CC--CCEEECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCC-EEECCCCCCCCCCCCCC
T ss_conf 88--9551158876443113466513650422699970798778746867747814866671-73166556676657632
Q ss_pred CCEEEEEEECCCCCEEEEEECCC--------EEEEEECCCCCEEEEEECCC--CCCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 98179997649999999996798--------09999888997025741578--878878599999229999999999789
Q 000697 1180 CSISALTASQVHGGQLAAGFVDG--------SVRLYDVRTPDMLVCSTRPH--TQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG--------~IrIwDlr~~~~~v~~~~~~--~~h~~~I~si~~sp~~~g~~LvSgs~D 1249 (1348)
..-.++.....++++++.|+... ...+.+..........+... ......-.+....++ +++++.|+.+
T Consensus 232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~d--g~i~v~GG~~ 309 (387)
T d1k3ia3 232 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD--GSTFITGGQR 309 (387)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT--SCEEEECCBS
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCC--CEEEEECCCC
T ss_conf 22637886135882478875367887752100000111113567884060366566543433566058--7499988845
Q ss_pred C-----------CEEEEECCCCCCCEEEEECC---CCCEEEEEEECCCCEEEEEEC
Q ss_conf 9-----------39999868897316999058---998699999079999999967
Q 000697 1250 G-----------DIQFLDIRNHKDAYLTIDAH---RGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1250 G-----------~I~IWDlr~~~~~i~tl~~h---~~~ItsLafspdg~~LasgS~ 1291 (1348)
+ .+.+||.... ....+... +..-....+.++|++++.|+.
T Consensus 310 ~~~~~~~~~~~~~ve~Ydp~~~--~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 310 RGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCCCCEECEEEEEECCCC--EEEECCCCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 6766889947010798979999--18878899975531279999889999999698
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