Citrus Sinensis ID: 000714

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330-----

MKMGLRDRTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALADPFIKLFNGVKGRCC

ccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHccccccccc

cccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHccHHHHHHHHHHHHccccHcHHHHHHccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHccccHcHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHEHEcccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHcHHHccccccccccc

mkmglrdrttsmedpdgtLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAfsavgshsqAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGgcippllgllksssaEGQIAAAKTIYAVSqggakdyvgskifstegVVPVLWEQLKnglksgnvvDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARReiagsngipaminatiapskefmQGEYAQALQENAMCALANISGGLSNVISSLGqslescsspaQVADTLGALASALMIYdskaestkpsdplivEQTLVnqfkprlpflVQERTIEALASLygnpllsikLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLsnenddskwaitaaggipplVQILEsgsakakeDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLtsdlpeskVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLvvlagspvleVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLEsasgsvatsEALDALAILSrsggasghvkpAWQVlaefpksitpivssiadatplLQDKAIEILSRLCrdqpavlgdevtgasgcISSIARRVIsctnpkvkiGGAALLICAAKVNHQRIVEdlnhsnscapLIQSLVTMLSVveasplrnqgnddkeAISIYRYTseearnggesesstaVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQftqmdykedSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLlgcadadvQDLLDLSEefalvrypdqvALERLFRVEDIRVGATSRKAIPALVDllkpipdrpgapflALGFLIQLAkdcpsnkivMVEAGALEALTKYLslgpqdatEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSenpsraladpfiklfngvkgrcc

mkmglrdrttsmedpdgTLASVAQCIEQLRqssssvqekEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARReiagsngipaMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSstkeetqakSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEAsplrnqgnddkeaISIYRYTseearnggesESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRvedirvgatsrkaipaLVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSenpsraladpfiklfngvkgrcc

MKMGLRDRTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVllggcippllgllKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIsslgqslescssPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRegiqllisllglsseqqqeCSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVansgaagglisllgcaDADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALADPFIKLFNGVKGRCC

******************************************LRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG*********************************GIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSL************VADTLGALASALMIYD***********LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE***********SILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI***************LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE****************IY*****************AVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALADPFIKLFNGVK****

*******************ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE*TKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV*****LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLE******ATSEALDALAILSRSGG*****KPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS*ALADPFIKLFNGVKGRCC

**************PDGTLASVAQCIEQL***********YSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSL***********QVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE**********ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST*********SALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTS***********STAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALADPFIKLFNGVKGRCC

************EDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALADPFIKLFNGVK**CC

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1335	2.2.26 [Sep-21-2011]
Q9SNC6		660	U-box domain-containing p	no	no	0.108	0.219	0.321	1e-09
O22193		826	U-box domain-containing p	no	no	0.095	0.153	0.404	1e-09
Q9ZV31		654	U-box domain-containing p	no	no	0.154	0.314	0.286	2e-07
Q8GWV5		760	U-box domain-containing p	no	no	0.128	0.226	0.307	2e-07
Q5VRH9		611	U-box domain-containing p	no	no	0.101	0.220	0.324	4e-07
Q5XEZ8		707	U-box domain-containing p	no	no	0.054	0.103	0.405	4e-07
Q8GUG9		612	U-box domain-containing p	no	no	0.104	0.227	0.319	1e-06
Q0IMG9		694	E3 ubiquitin-protein liga	no	no	0.081	0.157	0.372	2e-06
A2ZLU6		694	Protein spotted leaf 11 O	N/A	no	0.081	0.157	0.372	2e-06
Q757R0		568	Vacuolar protein 8 OS=Ash	yes	no	0.158	0.373	0.284	1e-05

>sp\|Q9SNC6\|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1	Back alignment and function desciption

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 48/193 (24%)

Query: 415 LLVGLITMATNEVQEELVRALLKLC---NNEGSLWRALQGREGIQLLISLLGLSSEQQQE 471
           LLVGL++   + +QE  V ALL L    NN+G++  A      I  ++ +L   S + +E
Sbjct: 398 LLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSA----GAIPGIVQVLKKGSMEARE 453

Query: 472 CSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC----NHSE 527
            + A L  LS   D++K  I A G IPPLV +L  G+ + K+D+A+ L NLC    N  +
Sbjct: 454 NAAATLFSLSV-IDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGK 512

Query: 528 DIRACV------------------------------------ESADAVPALLWLLKNGSA 551
            IRA V                                     S+DAVP+L+  ++ GS 
Sbjct: 513 AIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSP 572

Query: 552 NGKEIAAKTLNHL 564
             +E AA  L HL
Sbjct: 573 RNRENAAAVLVHL 585

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O22193\|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3	Back alignment and function description

>sp\|Q9ZV31\|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|Q8GWV5\|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2	Back alignment and function description

>sp\|Q5VRH9\|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|Q5XEZ8\|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1	Back alignment and function description

>sp\|Q8GUG9\|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2	Back alignment and function description

>sp\|Q0IMG9\|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2	Back alignment and function description

>sp\|A2ZLU6\|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2	Back alignment and function description

>sp\|Q757R0\|VAC8_ASHGO Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VAC8 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1335
224083759		2143	predicted protein [Populus trichocarpa]	0.987	0.615	0.862	0.0
255576178		2098	ubiquitin-protein ligase, putative [Rici	0.978	0.622	0.867	0.0
224096231		2116	predicted protein [Populus trichocarpa]	0.961	0.606	0.851	0.0
359480838		2179	PREDICTED: uncharacterized protein LOC10	0.988	0.605	0.847	0.0
356538029		2240	PREDICTED: uncharacterized protein LOC10	0.986	0.587	0.837	0.0
356569261		2164	PREDICTED: uncharacterized protein LOC10	0.986	0.608	0.837	0.0
449451471		2130	PREDICTED: uncharacterized protein LOC10	0.986	0.618	0.838	0.0
449496450		2124	PREDICTED: uncharacterized protein LOC10	0.986	0.620	0.837	0.0
356528503		2151	PREDICTED: uncharacterized protein LOC10	0.997	0.618	0.814	0.0
356511119		2151	PREDICTED: uncharacterized protein LOC10	0.997	0.618	0.812	0.0

>gi\|224083759\|ref\|XP_002307113.1\| predicted protein [Populus trichocarpa] gi\|222856562\|gb\|EEE94109.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2249 bits (5827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1140/1321 (86%), Positives = 1221/1321 (92%), Gaps = 3/1321 (0%)

Query: 1    MKMGLRDRTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAV 60
            MKMG+RDRT SMEDPDGTLASVAQCIEQLR+SSSSVQEKEY+LRQL EL++TRENAFSAV
Sbjct: 42   MKMGVRDRTGSMEDPDGTLASVAQCIEQLRRSSSSVQEKEYALRQLRELVETRENAFSAV 101

Query: 61   GSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA 120
            GSHSQAVPVLVSLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS 
Sbjct: 102  GSHSQAVPVLVSLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSE 161

Query: 121  EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 180
            EGQIAAAKTIYAVSQGGAKD+VGSKIFSTEGVVPVLWE L+NGLK+G +VDNLLTGAL+N
Sbjct: 162  EGQIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWELLRNGLKTGKLVDNLLTGALKN 221

Query: 181  LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADAT 240
            LS+STEGFW+AT+QAGG+DILVKLLT GQS TQA++CFLLACMM ED S+CS+VLAA+AT
Sbjct: 222  LSSSTEGFWSATIQAGGVDILVKLLTTGQSDTQANICFLLACMMMEDESICSKVLAAEAT 281

Query: 241  KQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQG 300
            KQLLKLLG GNEASVRAEAAGALKSLS  CKDAR+EIA SNGIPA+INATIAPSKEFMQG
Sbjct: 282  KQLLKLLGPGNEASVRAEAAGALKSLSAQCKDARQEIAKSNGIPALINATIAPSKEFMQG 341

Query: 301  EYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE 360
            EYAQALQE+AMCALANISGGLS VISSLGQSLESCSSPAQ ADTLGALASALMIYDSKAE
Sbjct: 342  EYAQALQEHAMCALANISGGLSFVISSLGQSLESCSSPAQTADTLGALASALMIYDSKAE 401

Query: 361  STKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI 420
            ST+ SDP+++EQTLVNQF P LP+LVQERTIEALASLYGN +LS+KL NSEAKRLLVGLI
Sbjct: 402  STRASDPVVIEQTLVNQFNPHLPYLVQERTIEALASLYGNAILSVKLANSEAKRLLVGLI 461

Query: 421  TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 480
            TMATNEVQ+ELVRALL LCNNEGSLWR+LQGREG+QLLISLLGLSSEQQQEC+VALLCLL
Sbjct: 462  TMATNEVQDELVRALLALCNNEGSLWRSLQGREGVQLLISLLGLSSEQQQECAVALLCLL 521

Query: 481  SNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVP 540
            SNEND+SKWAITAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVP
Sbjct: 522  SNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVP 581

Query: 541  ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLS 600
            ALLWLLKNGS NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLS
Sbjct: 582  ALLWLLKNGSLNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLS 641

Query: 601  VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTL 660
            VV  SD+LREGSAANDA+ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI+VKTL
Sbjct: 642  VVHLSDVLREGSAANDAIETMIKILSSTKEETQAKSASALAGIFETRKDLRESSISVKTL 701

Query: 661  WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQ 720
            WSVMKLL+V SE IL E+S CLA+IFLS++ENR+VAAVARDALSPL+ LA S  LEVAEQ
Sbjct: 702  WSVMKLLNVESENILAESSHCLASIFLSIKENRDVAAVARDALSPLIALANSSTLEVAEQ 761

Query: 721  ATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTIT 780
            ATCALANLILD EVS+KAI  EII+PATRVL EGTISGKT AAAAIARLLHSR+ID +IT
Sbjct: 762  ATCALANLILDGEVSKKAIPNEIIVPATRVLREGTISGKTHAAAAIARLLHSRRIDNSIT 821

Query: 781  DCVNRAGTVLALVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSI 839
            DCVN AGTVLALVSFLESA G S ATSEAL ALAILSRS GASGH+KPAW VLAEFP  I
Sbjct: 822  DCVNHAGTVLALVSFLESAIGRSAATSEALAALAILSRSEGASGHIKPAWAVLAEFPNHI 881

Query: 840  TPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVK 899
            +PIVSSIADATPLLQDKAIEILSRLCRDQP VLG+ V  ASGCI S+ARR I  T+PKVK
Sbjct: 882  SPIVSSIADATPLLQDKAIEILSRLCRDQPFVLGNAVASASGCIPSVARRAIDSTSPKVK 941

Query: 900  IGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISI 959
            IGGAALLICAAKV+HQR+VEDLN SNSC  LIQSLVTML   + SP  N  +DD+E ISI
Sbjct: 942  IGGAALLICAAKVSHQRVVEDLNQSNSCNHLIQSLVTMLCSADTSPSGNLVDDDREVISI 1001

Query: 960  YRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISD 1019
            YR+  E     GES  +TAVI+  NLA+WLL VLACH EK KIVIMEAGA++VLT+RIS 
Sbjct: 1002 YRHAKE--GESGESHKATAVIYDYNLAVWLLSVLACHGEKSKIVIMEAGAVEVLTNRISS 1059

Query: 1020 SLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFA 1079
               Q++Q D+ EDSSIWICALLLAILFQDRDIIRAHATMK+IP LANLLKSEESANRYFA
Sbjct: 1060 CYLQYSQSDFSEDSSIWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFA 1119

Query: 1080 AQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVAL 1139
            AQA+ASLVCNGSRGTLLSVANSGAAGGLISLLGCAD D+ DLL+LSEEFALV YPDQVAL
Sbjct: 1120 AQAIASLVCNGSRGTLLSVANSGAAGGLISLLGCADGDISDLLELSEEFALVCYPDQVAL 1179

Query: 1140 ERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEA 1199
            ERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALG L QLAKDCP NK VMVE+
Sbjct: 1180 ERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLNQLAKDCPPNKTVMVES 1239

Query: 1200 GALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGAR 1259
            G LEALTKYLSLG QDATEEAATDLLGILFSSAEIRRHE+AF AVSQLVAVLR+GGR AR
Sbjct: 1240 GILEALTKYLSLGLQDATEEAATDLLGILFSSAEIRRHEAAFGAVSQLVAVLRMGGRAAR 1299

Query: 1260 YSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319
            YSAAKALESLFSADHIRNA++ARQAVQPLVEILNTGLE+EQHAAIAALVRLLSENPSRAL
Sbjct: 1300 YSAAKALESLFSADHIRNADTARQAVQPLVEILNTGLEKEQHAAIAALVRLLSENPSRAL 1359

Query: 1320 A 1320
            A
Sbjct: 1360 A 1360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255576178\|ref\|XP_002528983.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223531573\|gb\|EEF33402.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224096231\|ref\|XP_002310584.1\| predicted protein [Populus trichocarpa] gi\|222853487\|gb\|EEE91034.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359480838\|ref\|XP_002276798.2\| PREDICTED: uncharacterized protein LOC100264630 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356538029\|ref\|XP_003537507.1\| PREDICTED: uncharacterized protein LOC100816765 [Glycine max]	Back alignment and taxonomy information

>gi\|356569261\|ref\|XP_003552822.1\| PREDICTED: uncharacterized protein LOC100818900 [Glycine max]	Back alignment and taxonomy information

>gi\|449451471\|ref\|XP_004143485.1\| PREDICTED: uncharacterized protein LOC101213526 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449496450\|ref\|XP_004160137.1\| PREDICTED: uncharacterized protein LOC101230042 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356528503\|ref\|XP_003532842.1\| PREDICTED: uncharacterized protein LOC100794002 [Glycine max]	Back alignment and taxonomy information

>gi\|356511119\|ref\|XP_003524277.1\| PREDICTED: uncharacterized protein LOC100807370 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1335
TAIR\|locus:2827868		2150	CSI1 "cellulose synthase-inter	0.990	0.614	0.733	0.0
TAIR\|locus:2204700		2136	AT1G77460 "AT1G77460" [Arabido	0.982	0.613	0.407	1.9e-265
TAIR\|locus:2205866		2114	AT1G44120 [Arabidopsis thalian	0.973	0.614	0.352	6.6e-210
ASPGD\|ASPL0000008980		579	AN12408 [Emericella nidulans (	0.310	0.715	0.229	2.9e-09
TAIR\|locus:2013990		628	AT1G71020 [Arabidopsis thalian	0.122	0.259	0.348	4.4e-06
TAIR\|locus:2045334		829	PUB4 "plant U-box 4" [Arabidop	0.286	0.460	0.219	4.6e-08
TAIR\|locus:2017719		612	AT1G23030 [Arabidopsis thalian	0.143	0.312	0.26	4.9e-08
TAIR\|locus:2178818		357	AT5G58680 "AT5G58680" [Arabido	0.143	0.535	0.278	1.3e-07
SGD\|S000000739		578	VAC8 "Phosphorylated and palmi	0.282	0.652	0.254	4.2e-07
TAIR\|locus:2082682		632	PUB14 "plant U-box 14" [Arabid	0.114	0.242	0.327	2.1e-06

TAIR\|locus:2827868 CSI1 "cellulose synthase-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4748 (1676.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 985/1342 (73%), Positives = 1112/1342 (82%)

Query:     2 KMGLRDRTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVG 61
             KM LRDRTTSMEDPDGTLASVAQCIEQLRQ SSS QE+EY L+QLL+LI+ RENAFSAVG
Sbjct:    43 KMSLRDRTTSMEDPDGTLASVAQCIEQLRQGSSSAQEREYCLKQLLDLIEMRENAFSAVG 102

Query:    62 SHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVXXXXXXXXXXXXXKSSSAE 121
             SHSQAVPVLVSLLRSGS+ VKIQAATVLGSLCKENELRVKV             KSSS E
Sbjct:   103 SHSQAVPVLVSLLRSGSVGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSVE 162

Query:   122 GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181
             GQIAAAKTIYAVS+GG KD+VGSKIFSTEGVVPVLW+QL++G K G V D LLTGAL+NL
Sbjct:   163 GQIAAAKTIYAVSEGGVKDHVGSKIFSTEGVVPVLWDQLRSGNKKGEV-DGLLTGALKNL 221

Query:   182 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATK 241
             S++TEGFW+ T++AGG+D+LVKLLT GQSST ++VCFLLACMM ED SVCS VL AD TK
Sbjct:   222 SSTTEGFWSETIRAGGVDVLVKLLTSGQSSTLSNVCFLLACMMMEDASVCSSVLTADITK 281

Query:   242 QLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 301
             QLLKLLGSGNEA VRAEAA ALKSLS   K+A+REIA SNGIP +INATIAPSKEFMQGE
Sbjct:   282 QLLKLLGSGNEAPVRAEAAAALKSLSAQSKEAKREIANSNGIPVLINATIAPSKEFMQGE 341

Query:   302 YAQALQENAMCALANISGGLSNVIXXXXXXXXXXXXPAQVADTLGALASALMIYDSKAES 361
             YAQALQENAMCALANISGGLS VI            PAQ ADTLGALASALMIYD KAE+
Sbjct:   342 YAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQTADTLGALASALMIYDGKAET 401

Query:   362 TKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 421
             T+ SDPL+VEQTL+ QFKPRLPFLVQERTIEALASLYGN +LS+KL NS+AKRLLVGLIT
Sbjct:   402 TRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSVKLSNSDAKRLLVGLIT 461

Query:   422 MATNEVQEELVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLS 481
             MA NEVQ+ELV+ALL LCN+EGSLW+ALQGR                   C+VALLCLLS
Sbjct:   462 MAVNEVQDELVKALLMLCNHEGSLWQALQGREGIQLLISLLGLSSEQQQECAVALLCLLS 521

Query:   482 NENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 541
             NEND+SKWAITAAGGIPPLVQILE+GSAKA+EDSA+ILRNLCNHSEDIRACVESADAVPA
Sbjct:   522 NENDESKWAITAAGGIPPLVQILETGSAKAREDSATILRNLCNHSEDIRACVESADAVPA 581

Query:   542 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSV 601
             LLWLLKNGS NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESK+YVLDALKSMLSV
Sbjct:   582 LLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKIYVLDALKSMLSV 641

Query:   602 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW 661
             V F+D+LREGSA+NDA+ETMIK++SS KEETQA SASALA IF++RKDLRES++A+KTL 
Sbjct:   642 VPFNDMLREGSASNDAIETMIKLMSSGKEETQANSASALAAIFQSRKDLRESALALKTLL 701

Query:   662 SVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 721
             S +KLL+V SE ILVE+ RCLAAI LS++ENR+VA  AR+AL  +V LA S VLEVAEQ 
Sbjct:   702 SAIKLLNVDSERILVESCRCLAAILLSIKENRDVAISAREALPTIVSLANSSVLEVAEQG 761

Query:   722 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITD 781
              CALANLILDSEVSEK I E+IIL ATR+L EGT+SGKTLAAAAIARLL  R+ID  +TD
Sbjct:   762 MCALANLILDSEVSEKVIVEDIILSATRILREGTVSGKTLAAAAIARLLSRRRIDSALTD 821

Query:   782 CVNRAGTVLALVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSIT 840
              VNRAGTVL LVS LESA G S A SEALDALAI SRSG A+G+VKPAW VLAE P S+ 
Sbjct:   822 SVNRAGTVLTLVSLLESADGRSDAISEALDALAIFSRSG-ANGNVKPAWAVLAESPNSMA 880

Query:   841 PIVSSIAD-ATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVK 899
             PIVSSI   A P LQDKAIE+LSRLCRDQP VLG+ V  A  C+SSIA+RVI+  +PK+K
Sbjct:   881 PIVSSIVSVANPSLQDKAIEVLSRLCRDQPIVLGNMVNNARDCVSSIAKRVINTRDPKIK 940

Query:   900 IGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISI 959
             IGGAA++ICAAKV+ Q+++E+LN +  CA  +Q+LV +L  V+     +Q  D+K+ I I
Sbjct:   941 IGGAAIIICAAKVDDQKMIENLNETQLCAKFVQALVGILDSVQ-----DQEKDEKDKICI 995

Query:   960 YRYTSE-------EARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDV 1012
               +  E       EA    E  +   VI G+NLAIWLL VL+CHDEK + VI+E+  +++
Sbjct:   996 CIHPKEKEEDEEEEATENREGSTGATVISGDNLAIWLLSVLSCHDEKSRAVILESEGIEL 1055

Query:  1013 LTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEE 1072
             +TDRI +   +F Q D  ED++IW+CALLLAILFQDR+I RAHATMKA+P+L+NL+KSEE
Sbjct:  1056 ITDRIGN---RFLQADNGEDANIWVCALLLAILFQDREITRAHATMKAVPVLSNLVKSEE 1112

Query:  1073 SANRYFAAQAVASLVCNGSRGTLLSVXXXXXXXXXXXXXXXXDADVQDLLDLSEEFALVR 1132
              A+RYFAAQA+ASLVCNGSRGTLLSV                D D+++LL LS+EF LVR
Sbjct:  1113 YADRYFAAQALASLVCNGSRGTLLSVANSGAAAGFISLLGCSDDDIKELLQLSQEFTLVR 1172

Query:  1133 YPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSN 1192
             YPDQVALERLFRVEDIRVGATSRKAIP LV+LLKPIPDRPGAP L+L  L QLA DCP N
Sbjct:  1173 YPDQVALERLFRVEDIRVGATSRKAIPLLVELLKPIPDRPGAPLLSLNLLTQLAGDCPQN 1232

Query:  1193 KIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLR 1252
              IVMVE+GALE L+KYLSLGPQD  EEAAT LLGILFSSAEIRRHESAF AVSQLVAVLR
Sbjct:  1233 MIVMVESGALEGLSKYLSLGPQDEQEEAATGLLGILFSSAEIRRHESAFGAVSQLVAVLR 1292

Query:  1253 LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLS 1312
             LGGRGARYSAAKAL+SLF+ADHIRNAES+RQAVQPLVEILNTG EREQHAAIAALVRLLS
Sbjct:  1293 LGGRGARYSAAKALDSLFTADHIRNAESSRQAVQPLVEILNTGSEREQHAAIAALVRLLS 1352

Query:  1313 ENPSRALADPFIKLFNGVKGRC 1334
             +NPSRALA   +++ N V   C
Sbjct:  1353 DNPSRALAVADVEM-NAVDVLC 1373

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030244 "cellulose biosynthetic process" evidence=IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0051211 "anisotropic cell growth" evidence=IMP

TAIR\|locus:2204700 AT1G77460 "AT1G77460" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205866 AT1G44120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

SGD\|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

TAIR\|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00050193	hypothetical protein (2143 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1335
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	0.0
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-19
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-10
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-10
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-09
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-08
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-07
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-06
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-05
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-04
pfam00514		41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04
COG5064		526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.002

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

 Score = 2085 bits (5405), Expect = 0.0
 Identities = 854/1321 (64%), Positives = 1025/1321 (77%), Gaps = 19/1321 (1%)

Query: 8    RTTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAV 67
            RT+ M+DPDGTLASVAQCIEQLR  SSS QEKE +  +LLEL  TRE A  A+GSHSQA+
Sbjct: 1    RTSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAM 60

Query: 68   PVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAA 127
            P+LVSLLRSG+L  K+ AA VLG LCKE +LRVKVLLGGCIPPLL LLKS SAE Q AAA
Sbjct: 61   PLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAA 120

Query: 128  KTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEG 187
            + IYAVS GG  D+VGSKIFSTEGVVP LW+QL+ G K   VV+ LLTGALRNL  ST+G
Sbjct: 121  EAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDG 180

Query: 188  FWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 247
            FW+AT++AGG+DILVKLL+ G S  QA+   LLA +M    S  S+VL A A KQLLKLL
Sbjct: 181  FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240

Query: 248  GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQ 307
            G GNE SVRAEAAGAL++LS   K+A++ IA + GIPA+INAT+APSKEFMQGE+AQALQ
Sbjct: 241  GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQ 300

Query: 308  ENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 367
            ENAM ALANI GG+S +I  LG+  ES  SPA +ADTLGALA ALM++DS AEST+  DP
Sbjct: 301  ENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDP 360

Query: 368  LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV 427
             ++EQ LV   KPR   LVQER IEALASLYGN  LS KL ++EAK++LVGLITMAT +V
Sbjct: 361  TVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADV 420

Query: 428  QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS 487
            QEEL+RAL  LC  +G LW AL GREG+QLLISLLGLSSEQQQE +VALL +L++E D+S
Sbjct: 421  QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480

Query: 488  KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 547
            KWAITAAGGIPPLVQ+LE+GS KAKEDSA++L NLC HSEDIRACVESA AVPALLWLLK
Sbjct: 481  KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK 540

Query: 548  NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDI 607
            NG   G+EIAAKTL  L+  +D ATISQLTALL  DLPESKV+VLD L  +LSV S  D+
Sbjct: 541  NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600

Query: 608  LREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL 667
            +REGSAANDA+ T+I++LSS+KEETQ K+AS LA IF +R+DL ES    + +   +KLL
Sbjct: 601  VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL 660

Query: 668  DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 727
               +E +  +++R LAA+  S++ENR+V+  A DA+ PL+ LA S  +EVAEQA CALAN
Sbjct: 661  TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720

Query: 728  LILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAG 787
            L+ D EV+ +A+AE+IILP TRVL EGT+ GK  AA A+A+LL    +D  + D V   G
Sbjct: 721  LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780

Query: 788  TVLALVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSI 846
            TVLALV  L S    S ATSEAL+ALA+L+R+ G +    P W VLAE P S+ P+V  +
Sbjct: 781  TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL 840

Query: 847  ADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALL 906
            A+  PL+QDKAIEILSRLCRDQP VLGD +  AS CISS+A R+I+ ++ +VKIGG ALL
Sbjct: 841  AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALL 900

Query: 907  ICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEE 966
            ICAAK + Q ++E L+ S     LIQ+LV ML          + N  KE++SI   T   
Sbjct: 901  ICAAKEHRQLVMEALDESGYLKLLIQALVDML----------KQNSKKESLSIEIQTPRG 950

Query: 967  ARN------GGESES-STAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISD 1019
                     G + E    A I G  +A+WLL V+A HD K K+ IMEAG ++VLT++++ 
Sbjct: 951  FLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLAS 1010

Query: 1020 SLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFA 1079
              S   Q ++++  SIWI ALLLAILFQDRD++RA ATM+AIP LANLLKSEE+ +RYFA
Sbjct: 1011 YTSN-RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFA 1069

Query: 1080 AQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVAL 1139
            AQA+ASLVCNGSRGTLL+VANSGA GGLISLLGCA++D+ +L+ LSEEF+LVR PDQVAL
Sbjct: 1070 AQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVAL 1129

Query: 1140 ERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEA 1199
            ERLFRVEDIRVGAT+RKAIP LVDLLKPIPDRPGAP LALG L QLA+    NK+ M EA
Sbjct: 1130 ERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEA 1189

Query: 1200 GALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGAR 1259
            GAL+ALTKYLSLGPQD+TEEAA++LL ILFSS E+RRHESAF AV+QLVAVLRLG R AR
Sbjct: 1190 GALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSAR 1249

Query: 1260 YSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319
            YSAA+AL+ LFSA+HIR++E ARQAVQPLVE+LNTG E EQHAAI AL++L S NPS+AL
Sbjct: 1250 YSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKAL 1309

Query: 1320 A 1320
            A
Sbjct: 1310 A 1310

Length = 2102

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat	Back alignment and domain information

>gnl\|CDD\|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1335
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.96
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.9
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.88
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.83
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.76
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.72
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.7
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.67
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.62
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.6
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.59
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.43
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.41
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.35
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.34
PRK09687		280	putative lyase; Provisional	99.32
PRK09687		280	putative lyase; Provisional	99.29
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.26
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.25
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.24
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.22
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.22
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.22
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.2
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.2
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.19
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.09
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.06
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.03
PTZ00429		746	beta-adaptin; Provisional	98.99
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.98
PTZ00429		746	beta-adaptin; Provisional	98.94
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.92
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.86
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.82
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.76
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.74
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	98.74
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.71
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.7
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.67
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.64
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.54
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.49
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.46
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.42
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.4
PF05536		543	Neurochondrin: Neurochondrin	98.4
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.38
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.32
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.31
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.31
TIGR02270		410	conserved hypothetical protein. Members are found	98.2
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.19
TIGR02270		410	conserved hypothetical protein. Members are found	98.19
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.16
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.15
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.14
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.12
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.09
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.08
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.07
PF05536		543	Neurochondrin: Neurochondrin	98.06
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.03
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.94
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.89
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.88
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.85
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.8
KOG4646		173	consensus Uncharacterized conserved protein, conta	97.8
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.78
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.74
KOG4646		173	consensus Uncharacterized conserved protein, conta	97.71
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.69
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.68
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.65
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.61
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.59
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.58
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.53
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.5
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.5
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.47
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	97.46
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.41
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	97.36
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.36
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.25
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.22
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	97.21
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.21
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.15
KOG2734		536	consensus Uncharacterized conserved protein [Funct	97.07
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	97.04
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.94
PRK14707		2710	hypothetical protein; Provisional	96.9
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.87
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	96.87
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	96.85
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.82
COG5369		743	Uncharacterized conserved protein [Function unknow	96.79
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	96.76
KOG0567		289	consensus HEAT repeat-containing protein [General	96.75
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	96.67
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	96.6
KOG2734		536	consensus Uncharacterized conserved protein [Funct	96.56
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	96.44
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	96.4
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.39
KOG2259		823	consensus Uncharacterized conserved protein [Funct	96.39
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.33
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.16
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.09
KOG0567		289	consensus HEAT repeat-containing protein [General	95.95
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	95.92
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.91
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	95.91
KOG2259		823	consensus Uncharacterized conserved protein [Funct	95.88
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.88
COG5369		743	Uncharacterized conserved protein [Function unknow	95.87
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.85
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.85
PRK14707		2710	hypothetical protein; Provisional	95.76
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	95.58
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	95.54
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.46
PF05004		309	IFRD: Interferon-related developmental regulator (	95.09
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.07
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.01
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.97
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.5
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	94.42
KOG1788		2799	consensus Uncharacterized conserved protein [Funct	94.38
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	94.33
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.19
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	93.7
PF05004		309	IFRD: Interferon-related developmental regulator (	93.36
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.08
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	92.98
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.78
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	92.67
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.57
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	92.46
KOG3036		293	consensus Protein involved in cell differentiation	92.13
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	92.02
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.22
KOG2062		929	consensus 26S proteasome regulatory complex, subun	91.11
PF08045		257	CDC14: Cell division control protein 14, SIN compo	90.97
KOG2062		929	consensus 26S proteasome regulatory complex, subun	90.5
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.14
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.45
PF08045		257	CDC14: Cell division control protein 14, SIN compo	89.29
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.22
PF07814		361	WAPL: Wings apart-like protein regulation of heter	89.1
KOG2956		516	consensus CLIP-associating protein [General functi	89.03
PF07814		361	WAPL: Wings apart-like protein regulation of heter	88.23
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.42
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	87.38
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	87.31
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	86.93
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	86.66
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	86.65
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.51
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.14
KOG4653		982	consensus Uncharacterized conserved protein [Funct	85.73
KOG3036		293	consensus Protein involved in cell differentiation	85.65
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.6
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.35
KOG2956		516	consensus CLIP-associating protein [General functi	85.3
PF14225		262	MOR2-PAG1_C: Cell morphogenesis C-terminal	85.14
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.03
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	84.97
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.91
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	84.18
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	84.12
KOG2611		698	consensus Neurochondrin/leucine-rich protein (Neur	83.68
KOG0414		1251	consensus Chromosome condensation complex Condensi	83.3
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	83.18
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	83.13
KOG2025		892	consensus Chromosome condensation complex Condensi	82.97
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	81.43
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	80.86
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	80.6
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	80.54

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.4e-184  Score=1787.55  Aligned_cols=1307  Identities=65%  Similarity=0.921  Sum_probs=1226.7

Q ss_pred             CCCCCCchhHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHH
Q 000714           10 TSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVL   89 (1335)
Q Consensus        10 ~~~~~~~~~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L   89 (1335)
                      .+||||+++..+|..++++|++.+++.++|++|+..|+.|+++++++|..|+...|++|.|+.+|++++..+|.+++.+|
T Consensus         3 ~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL   82 (2102)
T PLN03200          3 SEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVL   82 (2102)
T ss_pred             ccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            46999999999999999999987778899999999999999999999999987799999999999999999999999999


Q ss_pred             HHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhh
Q 000714           90 GSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV  169 (1335)
Q Consensus        90 ~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~  169 (1335)
                      .+++.+++++.+++..|+||+|+.+|++++++.|+.|+.+|++++..+..|+.+..+++..|+||+|++++++++..+..
T Consensus        83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~  162 (2102)
T PLN03200         83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV  162 (2102)
T ss_pred             HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence            99999999999999999999999999999999999999999999994322444446788999999999999998766666


Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcC
Q 000714          170 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS  249 (1335)
Q Consensus       170 v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s  249 (1335)
                      +++.++.+|.|||...++++..+++.|+|+.++.+|+++++..+..++.+|.+++...++.+..+++.|+||.|+++|++
T Consensus       163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence            77888999999999999998999999999999999999999999999999988987767788999999999999999987


Q ss_pred             CCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhc
Q 000714          250 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG  329 (1335)
Q Consensus       250 ~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~  329 (1335)
                      +++..+|..|+++|++|+++++++++.+++.||+|.|++++.++++++++++.+..++++|+++|.|+++|.+.++.+|+
T Consensus       243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~  322 (2102)
T PLN03200        243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG  322 (2102)
T ss_pred             CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence            66668999999999999998999999999999999999999999888888888889999999999999999999999999


Q ss_pred             ccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc
Q 000714          330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN  409 (1335)
Q Consensus       330 ~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~  409 (1335)
                      ++.++++...++++.+|++.|+++.++...+....+++..+...|++|+++..+..+++.+.++|..++.|+.+++.+.+
T Consensus       323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~  402 (2102)
T PLN03200        323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH  402 (2102)
T ss_pred             HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence            99988888888899999999999998876666667788888999999999998887899999999999999999999999


Q ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714          410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW  489 (1335)
Q Consensus       410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~  489 (1335)
                      .++++.|+.||...+.++|..++++|++|+.++++.++.+.+.|++|.|+++|++++..+|+.|+++|+||+..+++++.
T Consensus       403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999988888999


Q ss_pred             HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714          490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD  569 (1335)
Q Consensus       490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~  569 (1335)
                      .+.++|+||+|+++|++++.++|+.|+|+|+||+.++++++..+.++|++++|+++|++++++.|+.|+++|.++....+
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999877888888899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 000714          570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD  649 (1335)
Q Consensus       570 ~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~  649 (1335)
                      ...+++++.+|.++++..+.++..+++++......++..+.+....++++.|+++++++++.+++.|+++|.+++.++++
T Consensus       563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            99999999999999999999999999999887777776666666789999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714          650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI  729 (1335)
Q Consensus       650 ~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~  729 (1335)
                      ++..++..|++++++.+|++++.+++++++++|.+++.+..+.++..+.+.|++++|++++++++.++++.++.+|.|++
T Consensus       643 ~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl  722 (2102)
T PLN03200        643 LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL  722 (2102)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998777777767899999999999999999999999999999999


Q ss_pred             CCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCC-CCCCchhH
Q 000714          730 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEA  808 (1335)
Q Consensus       730 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~-~~~~~~~a  808 (1335)
                      .+++.+.++...|++++|++++++|+.++|++|+|+|.+|.++++.+++..+++++.|++.+|+.+++..+ +.+...++
T Consensus       723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~a  802 (2102)
T PLN03200        723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA  802 (2102)
T ss_pred             cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999 77777899


Q ss_pred             HHHHHHHHHhCCCCCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCCccchhhhcccccHHHHHH
Q 000714          809 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIAR  888 (1335)
Q Consensus       809 l~~L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~~~g~~i~~~g~~~~~~~~  888 (1335)
                      +++|..+++.+.+.++++|||..+.|+|+++++|++|+..++|.+|+|+++||++||+||+.+.|+.+....+|+.+++.
T Consensus       803 l~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~  882 (2102)
T PLN03200        803 LEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLAD  882 (2102)
T ss_pred             HHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCchhhhhhHHHHHHhhccccchhhcccccccchhHHHHHHHhhhhcccCCcccc-CCCchhhhHHhhcCCchhh
Q 000714          889 RVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRN-QGNDDKEAISIYRYTSEEA  967 (1335)
Q Consensus       889 ~~l~s~~~~~k~~a~~~~i~~~k~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  967 (1335)
                      |+++|++.++|+||+.++||++|.++|++++.+++++++..+|+.||||+++++.++  + +..+.+..-..-++  ..-
T Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~  958 (2102)
T PLN03200        883 RIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKE--SLSIEIQTPRGFLESN--LFA  958 (2102)
T ss_pred             HHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCccc--ccceeecCCccchhhh--hhc
Confidence            999999999999999999999999999999999999999999999999999987773  2 11111000000000  001


Q ss_pred             ccCCccccCcchhchhhHHHHHHHHHhcCCCccchhHhhcchhHHhHHHhhccccccccccccccchhHHHHHHHHHHhc
Q 000714          968 RNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQ 1047 (1335)
Q Consensus       968 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 1047 (1335)
                      ..+.+.-.++..+.|+++|+|||++||+||++||++|||+|+||+|||||++|... +|++++|++++|||+||||||||
T Consensus       959 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~ 1037 (2102)
T PLN03200        959 DGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQ 1037 (2102)
T ss_pred             cCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcC
Confidence            12234444566777999999999999999999999999999999999999999666 99999999999999999999999


Q ss_pred             chhhhhhhhhhchHHHHHHHhcccchhhhHHHHHHHHHhhhcCCCCcchhhcccCcccchhhhhcccccchhhhhhhhHH
Q 000714         1048 DRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEE 1127 (1335)
Q Consensus      1048 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1335)
                      ||+++|+|++|++||+|+.+|||++.+|||||||+||||||||||||.|+|+|||||.|+|+|+||+|+||++|++|+||
T Consensus      1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e 1117 (2102)
T PLN03200       1038 DRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEE 1117 (2102)
T ss_pred             ChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCcHHHHHhhhccccccchhhhhhhhhhHHhhcCCCCCCCCchhHHHHHHHHhhhcCCCcceeeeecChHHHHHH
Q 000714         1128 FALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTK 1207 (1335)
Q Consensus      1128 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~l~~ 1207 (1335)
                      |+|++|||+++||+||++||||+|+||||+||+|||||+|++|||++|+.|++.|++|+.+++.|+..|+|+|+++.|+|
T Consensus      1118 ~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k 1197 (2102)
T PLN03200       1118 FSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK 1197 (2102)
T ss_pred             hhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCcchHHHHHHHHHHhhcChhhhhchhhHhhHHHHHHHHHhCCcchHhHHHHHHHhhcchhhhhhHHHHhhhhHH
Q 000714         1208 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQP 1287 (1335)
Q Consensus      1208 ~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 1287 (1335)
                      ++|++++++.+..+.++|++||.|++.+++.++.+|++||+.|||+|++.+|++|+++|++||++|++|+++.|+|||+|
T Consensus      1198 vLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~p 1277 (2102)
T PLN03200       1198 YLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQP 1277 (2102)
T ss_pred             HHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCchhHHHHHHHHHHHHhhcCCCCccchh
Q 000714         1288 LVEILNTGLEREQHAAIAALVRLLSENPSRALAD 1321 (1335)
Q Consensus      1288 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1321 (1335)
                      |++||+++++..|++++.||+||.+||++|+..-
T Consensus      1278 Lv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~ 1311 (2102)
T PLN03200       1278 LVEMLNTGSESEQHAAIGALIKLSSGNPSKALAI 1311 (2102)
T ss_pred             HHHHhcccchhhhHHHHHHHHHHHcCCCChHhHh
Confidence            9999999999999999999999999999987654

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1335
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-66
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-20
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-14
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-10
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-08
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-53
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-43
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-34
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	4e-32
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	8e-20
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	7e-19
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	4e-18
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-16
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-08
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-53
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-52
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-36
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-26
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-25
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-23
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-19
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-17
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-14
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-09
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-52
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-52
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-44
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-36
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-25
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-21
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-19
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-16
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	4e-33
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	3e-30
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	7e-26
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	4e-23
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	6e-22
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	4e-19
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	5e-11
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	3e-10
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-30
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-26
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-18
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-17
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-07
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-05
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-04
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-30
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-26
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-14
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-11
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-06
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-04
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-29
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	1e-23
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	3e-23
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	4e-22
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	8e-22
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-14
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-14
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-11
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-09
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-09
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	7e-09
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-06
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	2e-28
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	9e-28
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-23
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	5e-22
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-12
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	4e-12
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	3e-11
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	6e-10
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-28
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-27
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-22
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-19
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-18
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-18
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-15
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-09
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-09
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-08
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-06
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-26
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-23
3nmz_A		458	APC variant protein; protein-protein complex, arma	6e-22
3nmz_A		458	APC variant protein; protein-protein complex, arma	5e-17
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-14
3nmz_A		458	APC variant protein; protein-protein complex, arma	1e-12
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-12
3nmz_A		458	APC variant protein; protein-protein complex, arma	5e-04
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	8e-25
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	9e-23
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	9e-23
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	1e-22
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	3e-20
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	7e-20
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-13
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	3e-13
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	9e-08
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	4e-06
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	1e-04
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-22
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-15
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-12
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-12
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-06
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-21
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-21
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	8e-18
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	6e-11
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	3e-10
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	3e-09
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	7e-09
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-08
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	9e-08
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	4e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	5e-05
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-13
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-13
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-13
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-11
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-08
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-08
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-06
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-06
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-05
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	8e-13
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	1e-06
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-06
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-04
3grl_A		651	General vesicular transport factor P115; vesicle t	7e-04

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

 Score =  241 bits (615), Expect = 1e-66
 Identities = 122/791 (15%), Positives = 250/791 (31%), Gaps = 55/791 (6%)

Query: 18  TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG 77
           T   V Q ++     ++ + ++  +   L+ L   +E   + +      +  + SL +  
Sbjct: 4   TSTKVKQMMDLTFDLATPIDKRRAAANNLVVL--AKEQTGAELLYKDHCIAKVASLTKVE 61

Query: 78  S-LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAA-----KTIY 131
               + +    ++ +LC+ +  R K +L     P    +     E  ++ A       + 
Sbjct: 62  KDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILN 121

Query: 132 AVSQGGAKDYVGSKIFSTE-------GVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS 184
           A+S    K                   ++  L   + +   SG   D ++    RN+  +
Sbjct: 122 ALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT 181

Query: 185 TEGFWAATVQAGGIDILVKLLTLGQ-----------SSTQAHVCFLLACMMEEDVSVCSR 233
              +    V+  G+  L+ + +  +            S+       LA + E      ++
Sbjct: 182 ALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK 241

Query: 234 VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAP 293
               D   + +K      +   +     A+ +L +   D   ++    GI  MI A    
Sbjct: 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT 301

Query: 294 SKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 353
             E  Q    + L   A  +  + +  L      + + L    +       L  L     
Sbjct: 302 DDELQQRVACECL--IAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGS 359

Query: 354 IYDSKAESTKPSD---PLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL-EN 409
                A      D     + E       KP     ++    + LA L  +     KL E+
Sbjct: 360 YGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIED 419

Query: 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQ 469
             +   L+ L           +V   + LCN         + +E +  +I L   + +  
Sbjct: 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAY-------EKQEMLPEMIELAKFAKQHI 472

Query: 470 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 529
            E          N+       +   G    L  + ++ S  ++E  A +L  +C   +++
Sbjct: 473 PEEHELDDVDFINKR---ITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKEL 528

Query: 530 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD----------TATISQLTAL 579
           R  V     V ALL +   G+  GK  A + L  +    +             I  L  L
Sbjct: 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588

Query: 580 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 639
           L  D   + +   ++L ++ ++ S ++ +R+       V  +   L          +A  
Sbjct: 589 LQQD--CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646

Query: 640 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 699
           L  +  +   ++        +  +  L +   E      +  LA I     +  E     
Sbjct: 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706

Query: 700 RDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGK 759
              L  L  L  +P   V  +    + N+I   E   K + E  I+     L +     +
Sbjct: 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

Query: 760 TLAAAAIARLL 770
             A     + L
Sbjct: 767 AKAREVATQCL 777

PyMOL of 3now

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1335
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-25
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-17
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-12
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-10
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-24
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-15
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-12
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-10
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-08
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-06
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-04
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-17
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-16
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.003
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-13
d1xqra1		264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	9e-08
d1xqra1		264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-04

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 7e-25
 Identities = 60/470 (12%), Positives = 130/470 (27%), Gaps = 30/470 (6%)

Query: 67  VPVLVSLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIA 125
           +P  V  L S     +   A  +   C ++   + +V   G I  L+ LL+S +   Q A
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 126 AAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 185
           AA  +  +      +         +  +      L+        +   LTG L NLS++ 
Sbjct: 64  AAGALRNLVFRSTTN---KLETRRQNGIREAVSLLRR--TGNAEIQKQLTGLLWNLSSTD 118

Query: 186 EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 245
                  + A  + +L   + +  S        +   +++ +V         +AT  L  
Sbjct: 119 --ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV-------FFNATGCLRN 169

Query: 246 LLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQA 305
           L  +          +G + SL  + ++       +       +                A
Sbjct: 170 LSSADAGRQTMRNYSGLIDSLMAYVQNCV-----AASRCDDKSVENCMCVLHNLSYRLDA 224

Query: 306 LQENAMCALANISGGLSNVISSLGQSLESCSSPAQV-ADTLGALASALMIYDSKAESTKP 364
                   L   +       SS G              D                  +  
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 365 SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT 424
               +       +           + + A   L  + +  +     +    +  L+    
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 425 NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS------SEQQQECSVALLC 478
           ++V       L  +  +       + G +    +  LL         SE     +   + 
Sbjct: 345 SDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 479 LLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSE 527
            L            ++  +  ++ +  S  S KA E +  +L ++ +  E
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

PyMOL of d1xm9a1

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1335
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.97
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.96
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.93
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.9
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.89
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.88
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.87
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.82
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.8
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.74
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.69
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.42
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.42
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.42
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.16
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	99.02
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.4
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.99
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.97
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	97.23
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	96.68
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	94.21
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	84.36

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=343.94  Aligned_cols=506  Identities=21%  Similarity=0.190  Sum_probs=400.4

Q ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             89479899986059999999999999974119436899982-4991889983117-999999999999999640699883
Q 000714           64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLL-GGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQGGAKDY  141 (1335)
Q Consensus        64 ~gav~~Li~lL~s~~~~vk~~aa~~L~~L~~~~~~r~~i~~-~g~i~~Lv~lL~s-~~~e~~~~Aa~aL~~Ls~~~~~d~  141 (1335)
                      .+++|.|+.+|++++..++.+++.++++++.++..+..++. .|+++.|+.+|+. ++.+.++.|+.+|.+++.    +.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~----~~   91 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR   91 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----SH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC----CC
T ss_conf             97999999987299999999999999999845577899987133999999998479999999999999999958----91


Q ss_pred             CCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             22212640497089999853278871149999999999810398146899996098899999762599569999999999
Q 000714          142 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA  221 (1335)
Q Consensus       142 ~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~~Ls~~~~~~~~~i~~~G~I~~Lv~lL~s~~~~v~~~Aa~~L~  221 (1335)
                      ..+..+++.|++|.|+.+|++++   +.++..++++|.+++.+++..+..+.+.|+++.|+.++.+++++++..++.++.
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  168 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             66999998798999999857979---899999999999865132011367876588148999887057688888899998


Q ss_pred             HHHHCCCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf             97414811014673026189999995489979899999999983001898789999977993999998419870000146
Q 000714          222 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE  301 (1335)
Q Consensus       222 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~~~~i~~~Ggi~~Lv~lL~~~~~e~~~~~  301 (1335)
                      +++..++..+..+.+.|++++|+.++.+.+...++..++.++.+++. +++++..+++.|+++.|+.++.+++       
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~-------  240 (529)
T d1jdha_         169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS-------  240 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSC-------
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCC-------
T ss_conf             87630047888887605636899999861048999999998751101-3323304565433346999862540-------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             67999999999999841599312431100113799735787686556788876202456789999032599999750889
Q 000714          302 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR  381 (1335)
Q Consensus       302 ~~~~i~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~LL~~~  381 (1335)
                        ..++.+++.++.|++....                                                           
T Consensus       241 --~~~~~~a~~~l~~ls~~~~-----------------------------------------------------------  259 (529)
T d1jdha_         241 --QRLVQNCLWTLRNLSDAAT-----------------------------------------------------------  259 (529)
T ss_dssp             --HHHHHHHHHHHHHHHTTCT-----------------------------------------------------------
T ss_pred             --HHHHHHHHHHHHHCCCCCC-----------------------------------------------------------
T ss_conf             --1555301567775043211-----------------------------------------------------------


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             84668999999999985896002351036618989997718999999999999998421068103888626509999997
Q 000714          382 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL  461 (1335)
Q Consensus       382 ~~~~vq~~a~~aL~~L~~~~~~~~~i~~~g~i~~Lv~LL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l  461 (1335)
                                             ......++++.|+.++++.+..++..++.+|.+++..+...+..+.+.++++.|+..
T Consensus       260 -----------------------~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~  316 (529)
T d1jdha_         260 -----------------------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT  316 (529)
T ss_dssp             -----------------------TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             -----------------------CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----------------------025664010144541245428899999998875012203788888875007899999


Q ss_pred             HC--CCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             26--89988999999999982048967---4999985299798999620599-689999999999983059256999982
Q 000714          462 LG--LSSEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES  535 (1335)
Q Consensus       462 L~--s~~~~v~~~A~~aL~nLs~~~~~---~r~~i~~~g~I~~Lv~LL~~~~-~~vqe~Aa~aL~nLa~~~~~~r~~i~~  535 (1335)
                      +.  ++++.+++.++++|++++...+.   .+..+...++++.++.++..++ ..++..+++++.|++.. ++.+..+.+
T Consensus       317 l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~  395 (529)
T d1jdha_         317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE  395 (529)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHH
T ss_conf             9840011137889998850022000000035666776456124789871531278999999987500003-566666653


Q ss_pred             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf             69689999974129978999999999996225997718999988607991229999999999662137427998731002
Q 000714          536 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN  615 (1335)
Q Consensus       536 ~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Li~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~i~~~i~~~  615 (1335)
                      .|+++.|++++.++....++.++.+.........                                              
T Consensus       396 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  429 (529)
T d1jdha_         396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG----------------------------------------------  429 (529)
T ss_dssp             TTHHHHHHHHHHHHHHHHC-----------CBTT----------------------------------------------
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC----------------------------------------------
T ss_conf             2657999999866788999999860346776412----------------------------------------------


Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             15999999623999999999999999984289135799993399288998530489568999999999998048034599
Q 000714          616 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV  695 (1335)
Q Consensus       616 ~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~i~~~g~v~~Li~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~  695 (1335)
                                 ...+++...++.++.+++.. ..++..+.+.|++++|+.++.+.++.++..++.++.++. .++...+ 
T Consensus       430 -----------~~~~~~~~~~~~al~~la~~-~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~-  495 (529)
T d1jdha_         430 -----------VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAE-  495 (529)
T ss_dssp             -----------BCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSHHHHH-
T ss_pred             -----------CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCHHHHH-
T ss_conf             -----------13199999999999998449-888999997888999999867999899999999999986-5946699-


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9992799288999716999989999999999971
Q 000714          696 AAVARDALSPLVVLAGSPVLEVAEQATCALANLI  729 (1335)
Q Consensus       696 ~i~~~g~i~~Lv~LL~~~~~~vk~~Aa~aL~nL~  729 (1335)
                      .+.+.|++++|+++++++++.+++.++.+|++|.
T Consensus       496 ~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             9998888999999857999999999999999749

PyMOL of d1jdha_

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure