Citrus Sinensis ID: 000719

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330---
MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
cccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccEEEHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccc
cccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHcHHccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHEEEEEEHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccc
MAVNHQQQSLWREVLELTKTaqdrntdplTWAIQLSStlnsaadgdgptlpsTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSfaslvngpnydkiMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDaslddegllefasdknfkwptrpqdmeidgidgfidkrsehheglfrANTTMAIELIGEFLQNKVTSRILYLAHmnmpshwggFIERLRLLALKSAALrnskvitpEALLQLASDtrgdlgrksktapqkechavafpgslmslagqcngtsrsalwlpIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQrerdpsegpvpridsslcmvLSVTTLTVADIIEEEEselideteqspsnlpkdkqapgrrrKDLVTSLQLLgdfedmltpppfvRSIANQAAAKAIMFISGltvgngyyesvsmnglatsclGNMRHLIVEACIARNLldtsaylwpgyvnasdsnqvpcsiatqmsgwsslmkgspltpsltnalvvtpasslAEIEKVYEIAvngsddekICAATVLCGASlvrgwsvqeNTILFIIKllsppvpadysgseshLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICevfgssipnaswtlssgeefscyavFSNAFTILVRLWrfhkppleqltvdmplvasqlspeYLLLVRNSklasfgtspkdqmkskrfsknikfstdpifmdsfpklKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKinrsgtpltsatsgstnssgsgledvsiklkvpawdileatPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVtrglwkpafmngtdwpspatnlSSIEQQIKKILAatgvdvptvavggnspatlplPLAALVSLTITFKLDKASDRFLALVGLGLsslasscpwpcmpivASLWAQKVKRWNDFlvfsasgtvfhynTDAVVQLLKSCFtstlgltsshnysnggvgallghgfgshfsggispvgpgiLYLRVHRSVRDVMFMKEEILSILMHCVRDiascglpreKLEKLKktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVqeggesgcmvGMLGGYALAYFAVFCATFawgvdsesraskkrptvlgTHLEFLASALDRKisvgcdcatwRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
mavnhqqqsLWREVLELTKtaqdrntdpLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFasdknfkwptrpqdMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRnskvitpealLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPsegpvpridsslcmVLSVTTLTVADIIEEEESelideteqspsnlpkdkqapgrrrKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLasfgtspkdqmkskrfsknikfstdpifmdsFPKLKRWYRQNEECIASTltglvhgtSVHLIVDALLTKMFRKINRsgtpltsatsgstnssgsglEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEklkktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSesraskkrptvLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIErlrllalksaalrNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADiieeeeselideteQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLtsatsgstnssgsgLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNspatlplplaalvsltITFKLDKASDRFlalvglglsslassCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNggvgallghgfgshfsggISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSlaaamtraklaaslGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEElaltllgvggvgamgaaaqlIVESKI
**********WREVLEL**********PLTWAIQLS****************TELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQL*******************CHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQ************IDSSLCMVLSVTTLTVADII********************************VTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLM****LTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSK********************IKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKI************************VSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD*********PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIV****
**************LELTK*****NTDPLTWAIQLSSTL**********LPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLL**************************************ANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLAL************PEALLQLASDTRGDLGRKSKTAPQKECH*VAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE**************************DLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTV****************CLGNMRHLIVEACIARNLLDTSAYLWPGYVNAS******************LMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPV******S***LIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASW**SSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRN*****************************IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMF********************************KVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIAS***************************AMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWF*******************LGGYALAYFAVFCATFAWGV*************LGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESK*
********SLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTR***********QKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE*************************KDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASF***********RFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSG******************EDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD********RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
********SLWREVLELTKT**DRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFK********************SEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEES*******************PGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLAS******************KFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINR***********************SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLK*TKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHG******ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
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MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1333 2.2.26 [Sep-21-2011]
F4IN691275 Mediator of RNA polymeras yes no 0.936 0.978 0.606 0.0
Q9LUG91309 Mediator of RNA polymeras no no 0.974 0.992 0.576 0.0
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1 Back     alignment and function desciption
 Score = 1545 bits (3999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 821/1354 (60%), Positives = 991/1354 (73%), Gaps = 106/1354 (7%)

Query: 1    MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLV 60
            MA +  Q SLW  V  L ++AQ++N DPL WA+QL  TL SA    G +LPS +LA  LV
Sbjct: 1    MAPSEFQPSLWESVTSLIRSAQEKNVDPLHWALQLRLTLASA----GISLPSPDLAQFLV 56

Query: 61   SHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHA 120
            +HI W+NH P++WK LEKA+++ IVPP LVLALLS RVI NR+LHPAAYRLY+E L RHA
Sbjct: 57   THIFWENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHA 116

Query: 121  FSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEG 180
            FSF  L+  P Y K MNSIDD+L+LS+ FG++  E G +L+ FVFS+VW+LLDASLD+EG
Sbjct: 117  FSFMPLIRAPGYHKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEG 176

Query: 181  LLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTS 240
            LLE  S+K  KWP+ P DM++DG++  + KR+E+H+ L +ANT MAIELI EFLQNKVTS
Sbjct: 177  LLELTSNKRSKWPSSPHDMDLDGLENSV-KRNENHDALEKANTEMAIELIQEFLQNKVTS 235

Query: 241  RILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTA 300
            RIL+LA  NM                                             +SKT 
Sbjct: 236  RILHLASQNM---------------------------------------------ESKTI 250

Query: 301  PQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVK 360
            P+ E HA+   GS ++L      TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVK
Sbjct: 251  PRGEFHAIVSSGSKLAL------TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVK 304

Query: 361  ALQVVNGTTWHDTFLG-------------------LWIAALRLLQRERDPSEGPVPRIDS 401
            ALQ  N T+WHD FL                     ++  L +L  ERDP EGPVPR D+
Sbjct: 305  ALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDT 364

Query: 402  SLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFE 461
             LC++LSVT L VA+IIEEEES+ ID+T  SPSN  K+K+  G+ R+ L+ SLQ LGD+E
Sbjct: 365  FLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYE 422

Query: 462  DMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIA 521
             +LTPP  V+S+ANQAAAKAIMFISG+T  NG YE+ SM+  A+ C           C  
Sbjct: 423  SLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKV 471

Query: 522  R-NLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSL 580
            R +L     ++  G         + C+I    S WS +MKGSPLTPSLTN+L+ TPASSL
Sbjct: 472  RFSLFTLKMFVVMGVY-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSL 520

Query: 581  AEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSE 640
            AEIEK+YE+A  GS+DEKI  A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS 
Sbjct: 521  AEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSY 580

Query: 641  SHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSG 700
            SHLI  A  LN LLVGIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +G
Sbjct: 581  SHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTG 640

Query: 701  EEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTS 760
            E  S +AVFS AFT+L+RLWRF  PPL+ +  D+P V  Q SPEYLLLVRN +L  FG S
Sbjct: 641  ELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKS 700

Query: 761  PKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDAL 820
            PKD+M  +RFSK I  S DPIFMDSFP+LK+WYRQ++EC+AS L+ L  G+ VH IVD+L
Sbjct: 701  PKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSL 760

Query: 821  LTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACA 880
            L+ MF+K N+ G+   + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACA
Sbjct: 761  LSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACA 820

Query: 881  HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 940
            HG LSPRELATGLK L+D LPATL T+VSYFS+EVTRGLWKP  MNGTDWPSPA NL+S+
Sbjct: 821  HGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASV 880

Query: 941  EQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLS 1000
            EQQI+KILAATGVDVP +   G S ATLPLPLAALVSLTIT+KLDKA++RFL LVG  L 
Sbjct: 881  EQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALD 940

Query: 1001 SLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT 1060
            SLA++CPWPCMPIV SLW QKVKRW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT
Sbjct: 941  SLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLT 1000

Query: 1061 -SSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHC 1119
             +S   S GGVGALLGHGFGS +SGGIS   PGILY++VHRS+RDVMF+ EEILS+LM  
Sbjct: 1001 PTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFS 1060

Query: 1120 VRDIASCGLPREKLEKLKKTKHGMRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLV 1177
            V+ IA+  LP  + EKLKKTK G RY  GQVSL+ AM R KLAASLGASLVWISGG +LV
Sbjct: 1061 VKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLV 1120

Query: 1178 HSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKK 1237
             +L+ ETLPSWFISVHG   E  E G MV ML GYALAYFA+  + FAWGVDS   ASK+
Sbjct: 1121 QALIKETLPSWFISVHG---EEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKR 1177

Query: 1238 RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLS 1297
            RP VL  HLEF+ SAL+ KIS+GCD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLS
Sbjct: 1178 RPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLS 1237

Query: 1298 KGLRQWDEEELALTLLGVGGVGAMGAAAQLIVES 1331
            K LRQW+E++LAL LL  GG+G MGAA +LIVE+
Sbjct: 1238 KSLRQWNEQDLALALLCAGGLGTMGAATELIVET 1271
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1333
2960867111388 unnamed protein product [Vitis vinifera] 0.989 0.950 0.723 0.0
3594798641321 PREDICTED: uncharacterized protein LOC10 0.977 0.986 0.716 0.0
2241286681315 predicted protein [Populus trichocarpa] 0.972 0.986 0.708 0.0
2240688031295 predicted protein [Populus trichocarpa] 0.950 0.978 0.703 0.0
2555514871325 conserved hypothetical protein [Ricinus 0.988 0.994 0.656 0.0
2254325121305 PREDICTED: uncharacterized protein LOC10 0.974 0.995 0.668 0.0
4494449091335 PREDICTED: mediator of RNA polymerase II 0.984 0.983 0.696 0.0
3565578741310 PREDICTED: uncharacterized protein LOC10 0.981 0.998 0.638 0.0
3565490151305 PREDICTED: uncharacterized protein LOC10 0.971 0.992 0.638 0.0
2241003111304 predicted protein [Populus trichocarpa] 0.976 0.998 0.632 0.0
>gi|296086711|emb|CBI32346.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1947 bits (5044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1325 (72%), Positives = 1109/1325 (83%), Gaps = 6/1325 (0%)

Query: 7    QQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD 66
            Q  LW  VLELTK+AQ+RN+DPL WA+QLSS LNSA    G +LPS ELAHLLVSHICW 
Sbjct: 67   QPGLWDSVLELTKSAQERNSDPLLWAVQLSSILNSA----GTSLPSPELAHLLVSHICWA 122

Query: 67   NHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126
            N+VPITWKFLEKA++ +I PP LVLALLS+RVI NR+L+PAAYRLY+E L RH FSF S 
Sbjct: 123  NNVPITWKFLEKAVSGRIAPPMLVLALLSSRVIPNRRLYPAAYRLYMELLKRHTFSFTSE 182

Query: 127  VNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186
            +NGPNY KIM SIDDVL+LSQIFGL+VCE G L+VEF+FS+VWQLLDASLDDEGLLE A 
Sbjct: 183  INGPNYQKIMKSIDDVLHLSQIFGLQVCEPGALVVEFIFSIVWQLLDASLDDEGLLELAP 242

Query: 187  DKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLA 246
            +K  KWPTR QDM+IDG D F +KR++  EGL + NT MAIE+IG+F QNKVTS+ILYLA
Sbjct: 243  EKKSKWPTRSQDMDIDGQDSFNEKRTDRQEGLCKVNTVMAIEIIGDFFQNKVTSKILYLA 302

Query: 247  HMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECH 306
              NM SHWG FI+RLR+LA  S ALRNSK I+P+ALLQL SD R  L R+ KT+ QK+ H
Sbjct: 303  RRNMFSHWGSFIQRLRVLAANSTALRNSKHISPDALLQLTSDARIVLTRECKTSLQKQFH 362

Query: 307  AVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVN 366
            AV   GSL+S AGQC+G S SALWLPID+FLED MD +QV ATSAVE LTGLVKALQ VN
Sbjct: 363  AVVASGSLISSAGQCHGVSWSALWLPIDMFLEDTMDDSQVVATSAVETLTGLVKALQAVN 422

Query: 367  GTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELI 426
            GT+WH+TFLG+WIAALRL+QRERDPSEGPVPR+D+ LCM+LS+T L + +IIEEEES LI
Sbjct: 423  GTSWHNTFLGVWIAALRLVQRERDPSEGPVPRLDTCLCMLLSITPLAIVNIIEEEESTLI 482

Query: 427  DETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFIS 486
            DE  +SP+NL K+KQ   + RKDL++SLQLLGD+E +LT P  +  +ANQA AKA+MF+S
Sbjct: 483  DEAGRSPTNLRKEKQISVKHRKDLISSLQLLGDYEGLLTVPQSLSLVANQAVAKAMMFVS 542

Query: 487  GLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPC 546
            G+T G+GY + +SMN L  +C GNMRHLIVEACIARNLLDTSAYLWPGYVN   SNQ+P 
Sbjct: 543  GVTSGSGYLDCMSMNDLPMNCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGR-SNQLPR 601

Query: 547  SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLC 606
            S+   M GWSSLMKGSPLTP + N LV TPASSLAEIEK+YEIAVNGSDDEKI AA +LC
Sbjct: 602  SVPGPMPGWSSLMKGSPLTPPMINVLVSTPASSLAEIEKIYEIAVNGSDDEKISAAAILC 661

Query: 607  GASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIF 666
            GASLVRGW++QE+T+ FI KLLSPPVPADYSG++SHLIGYA  LN LLVGISSVDC+QI+
Sbjct: 662  GASLVRGWNIQEHTVFFITKLLSPPVPADYSGTDSHLIGYAPFLNVLLVGISSVDCVQIY 721

Query: 667  SLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPP 726
            SLHG VP LA ALMPICEVFGS  P  S TL++GEE S + VFSNAF +L+RLWRF+ PP
Sbjct: 722  SLHGLVPQLAGALMPICEVFGSCAPKVSCTLTTGEEISSHQVFSNAFNLLLRLWRFNHPP 781

Query: 727  LEQ-LTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDS 785
            LE  +  D+P V SQL+PEYLLLVRNS+LA+ G + K   K +R S+    S +PIFMDS
Sbjct: 782  LEHVMGGDIPPVGSQLTPEYLLLVRNSQLANSGNTTKGPFKYRRPSRISSPSPEPIFMDS 841

Query: 786  FPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNS 845
            FPKLK WYRQ++ CIAS L+GLVHGT VH +VDA+L  MFRK+ R G PLT   SGS+NS
Sbjct: 842  FPKLKLWYRQHQACIASALSGLVHGTPVHQVVDAVLNMMFRKMGRGGQPLTPTASGSSNS 901

Query: 846  SGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLA 905
            SGSG ED S++LK+PAWDILEA PFVLDAAL ACAHGRLSPRELATGLK+LSD LPA+LA
Sbjct: 902  SGSGPEDASLRLKLPAWDILEAIPFVLDAALTACAHGRLSPRELATGLKDLSDFLPASLA 961

Query: 906  TVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSP 965
            T+ SYFSAEVTRG+WKPAFMNGTDWPSPA NLS +EQQIKK+LAATGVDVP++A  G+SP
Sbjct: 962  TIASYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQQIKKVLAATGVDVPSLAAVGSSP 1021

Query: 966  ATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRW 1025
            ATLPLPLAALVSLTIT+KLD+A++R L +VG  L+SLA+ CPWPCMPI+ASLWAQKVKRW
Sbjct: 1022 ATLPLPLAALVSLTITYKLDRATERLLTVVGPALNSLAAGCPWPCMPIIASLWAQKVKRW 1081

Query: 1026 NDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGG 1085
             D+L+FSAS TVFH+ +DAVVQLLKSCFTSTLGL SS   SNGGVGALLGHGFGSH+SGG
Sbjct: 1082 ADYLIFSASRTVFHHKSDAVVQLLKSCFTSTLGLNSSPVSSNGGVGALLGHGFGSHYSGG 1141

Query: 1086 ISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRY 1145
            +SPV PGILYLRVHR VRDVMFM E +LS+LM  VRDIASCGLP+E+LEKLKKTK+GMRY
Sbjct: 1142 MSPVAPGILYLRVHRDVRDVMFMTEVVLSLLMQSVRDIASCGLPKERLEKLKKTKYGMRY 1201

Query: 1146 GQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCM 1205
            GQVSLAAAMTR KLAASLGAS+VWISGG +LV SL+ ETLPSWFISVHG   EG ES  M
Sbjct: 1202 GQVSLAAAMTRVKLAASLGASIVWISGGLTLVQSLIKETLPSWFISVHGSEHEGTESEEM 1261

Query: 1206 VGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCAT 1265
              MLGGYALAYFAV C TFAWGVD  S ASK+RP VLG HLEFLA+ALD KIS+GC   T
Sbjct: 1262 AAMLGGYALAYFAVLCGTFAWGVDLMSPASKRRPKVLGAHLEFLANALDGKISLGCVWGT 1321

Query: 1266 WRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAA 1325
            WRAYV   VTL+VGCTP W+ E++V+ LKR+SKGLRQW+EEELA+ LLG+GG+ AMGAAA
Sbjct: 1322 WRAYVPALVTLMVGCTPAWIPEVDVEVLKRVSKGLRQWNEEELAIALLGLGGIHAMGAAA 1381

Query: 1326 QLIVE 1330
            ++IVE
Sbjct: 1382 EVIVE 1386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479864|ref|XP_002271735.2| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128668|ref|XP_002320389.1| predicted protein [Populus trichocarpa] gi|222861162|gb|EEE98704.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068803|ref|XP_002302829.1| predicted protein [Populus trichocarpa] gi|222844555|gb|EEE82102.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551487|ref|XP_002516789.1| conserved hypothetical protein [Ricinus communis] gi|223543877|gb|EEF45403.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225432512|ref|XP_002277484.1| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera] gi|297736973|emb|CBI26174.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444909|ref|XP_004140216.1| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557874|ref|XP_003547235.1| PREDICTED: uncharacterized protein LOC100782680 [Glycine max] Back     alignment and taxonomy information
>gi|356549015|ref|XP_003542894.1| PREDICTED: uncharacterized protein LOC100812937 [Glycine max] Back     alignment and taxonomy information
>gi|224100311|ref|XP_002311827.1| predicted protein [Populus trichocarpa] gi|222851647|gb|EEE89194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1333
TAIR|locus:20880501309 RFR1 "AT3G23590" [Arabidopsis 0.642 0.654 0.560 0.0
TAIR|locus:20393561275 REF4 "AT2G48110" [Arabidopsis 0.564 0.590 0.612 0.0
TAIR|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2492 (882.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 484/863 (56%), Positives = 611/863 (70%)

Query:   447 RKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATS 506
             R DLVTSLQ+LGDF  +L PP  V S AN+AA KAI+F+SG  VG   ++ ++M  +  +
Sbjct:   425 RDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCFDVINMKDMPVN 484

Query:   507 CLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTP 566
             C GNMRHLIVEACIARN+LD SAY WPGYVN    NQ+P S+  ++  WSS +KG+PL  
Sbjct:   485 CSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQSLPNEVPCWSSFVKGAPLNA 543

Query:   567 SLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIK 626
             ++ N LV  PASSLAE+EK++E+AV GSDDEKI AATVLCGASL RGW++QE+T+ ++ +
Sbjct:   544 AMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEYLTR 603

Query:   627 LLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVF 686
             LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIFSLHG VP LA +LMPICE F
Sbjct:   604 LLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQLACSLMPICEEF 663

Query:   687 GSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYL 746
             GS  P+ SWTL SGE  S Y+VFSNAFT+L++LWRF+ PP+E    D+P V SQL+PE+L
Sbjct:   664 GSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHL 723

Query:   747 LLVRNSKLASFGTSPKDQMKSKRFSKNIKF-STDPIFMDSFPKLKRWYRQNEECIASTLT 805
             L VRNS L S     +D+ + KR S+  +  S  P+F+DSFPKLK WYRQ++ CIA+TL+
Sbjct:   724 LSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDSFPKLKVWYRQHQRCIAATLS 782

Query:   806 GLVHGTSVHLIVDALLTKMFRKINRSGTPLXXXXXXXXXXXXXXLEDVSIKLKVPAWDIL 865
             GL HG+ VH  V+ALL   F K+  S T L               ED +I+ + PAWDIL
Sbjct:   783 GLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSSSGAASEDSNIRPEFPAWDIL 841

Query:   866 EATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFM 925
             +A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LAT+VSYFSAEV+RG+WKP FM
Sbjct:   842 KAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVFM 901

Query:   926 NGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNXXXXXXXXXXXXXXXXITFKLD 985
             NG DWPSPATNLS++E+ I KILA TGVD+P++A GG+                IT+K+D
Sbjct:   902 NGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKID 961

Query:   986 KASDRFXXXXXXXXXXXXXXCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAV 1045
             KAS+RF              CPWPCMPIVASLW QK KRW DFLVFSAS TVF +N DAV
Sbjct:   962 KASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNQDAV 1021

Query:  1046 VQLLKSCFTSTLGLTSSHNYSNXXXXXXXXXXXXXXXXXXISPVGPGILYLRVHRSVRDV 1105
             +QLL++CF++TLGL ++   ++                  ISPV PGILYLR++R++RD 
Sbjct:  1022 IQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDT 1081

Query:  1106 MFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSXXXXXXXXXXXXXXGA 1165
             + + EEILS+L+H V DIA   L +EKLEKLK  K+G RYGQ S               A
Sbjct:  1082 VSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQSSLATAMTQVKLAASLSA 1141

Query:  1166 SLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFA 1225
             SLVW++GG  +VH L+ ET+PSWF+S     +E G S  +V  L G+ALAYF V C    
Sbjct:  1142 SLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSD-LVAELRGHALAYFVVLCGALT 1200

Query:  1226 WGVDSESRASKKR-PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTW 1284
             WGVDS S ASK+R   +LG+HLEF+ASALD KISVGC+ ATWR Y+SG V+L+V C P W
Sbjct:  1201 WGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGLVSLMVSCLPLW 1260

Query:  1285 MLEINVDALKRLSKGLRQWDEEE 1307
             + EI+ + LK LS GLR+W ++E
Sbjct:  1261 VTEIDTEVLKSLSNGLRKWGKDE 1283
GO:0003674 "molecular_function" evidence=ND
GO:0016592 "mediator complex" evidence=IDA
GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4IN69MD33B_ARATHNo assigned EC number0.60630.93620.9788yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023679001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (1323 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1333
PF11277990 Med24_N: Mediator complex subunit 24 N-terminal; I 95.83
PRK02866147 cyanate hydratase; Validated 81.72
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans Back     alignment and domain information 
Probab=95.83  E-value=1.3  Score=57.04  Aligned_cols=601  Identities=21%  Similarity=0.247  Sum_probs=333.6

Q ss_pred             HHhhCCCchhHHHHHHHHhhhcCCCCCCCCCcHHHHHHHHHhhhcCC-CCcchHHHHHHHHhcCCCChHHHHHhhhcccc
Q 000719           21 AQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDN-HVPITWKFLEKALTLKIVPPSLVLALLSTRVI   99 (1333)
Q Consensus        21 AQer~~~PLlWA~evas~l~sa~~~~Gv~LPS~ELA~~LVs~LCfdn-n~Ps~WKfLe~AlssrLv~PLhvLALLSsRVI   99 (1333)
                      |=.++-+|..|++-+=..+..     |++-=-.+||+.|+.+..-+. ..|-+=.||++|+++++|+...||.-++--- 
T Consensus        13 aW~ERw~d~~w~i~iK~~~~~-----g~~~d~~~LAe~LL~qa~iG~~Pn~LiLSYLk~al~sqlvs~~~vl~~I~k~~-   86 (990)
T PF11277_consen   13 AWRERWTDIQWGINIKKIIPR-----GVSGDIYNLAECLLQQAFIGPSPNPLILSYLKYALSSQLVSYAAVLEAISKFD-   86 (990)
T ss_pred             HHHhcCChhhHHHHHHHHccC-----CCcccHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcchhHHHHHHHHhhcc-
Confidence            334456889999999888864     333233679999999877663 6677999999999999999999887664321 


Q ss_pred             cCcccchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhccccc
Q 000719          100 SNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDE  179 (1333)
Q Consensus       100 P~R~~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~L~Da~LdD~  179 (1333)
                        ...+|.--.=-||++...-=      ...|+-|                   .|-++ +--=+++++.-|+-+.-.-.
T Consensus        87 --~f~k~~c~~~ll~~l~~~~~------~~sC~gk-------------------~EE~i-L~~Alls~v~WLL~~~~~~l  138 (990)
T PF11277_consen   87 --DFSKPHCINALLELLESIID------GLSCRGK-------------------AEECI-LCRALLSLVHWLLQCYEYSL  138 (990)
T ss_pred             --ccchhHHHHHHHHHHHHhcC------CcccCCc-------------------chHHH-HHHHHHHHHHHHHHHHHHHH
Confidence              13445555555555543111      1111111                   22222 22224555554444331100


Q ss_pred             CcccccccCCCCCCCCCCcccccCCCCccccccchhhhhccchhHHHHHHHHHHHhhhhHHHHHHHHhhcCCCchhhHHH
Q 000719          180 GLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIE  259 (1333)
Q Consensus       180 Gl~~~~~~~~~~~~~~~qdMeiDg~~~~~~kr~e~~E~Lrk~NT~mAiEvI~~fl~nK~ts~iLrL~~~Nmpe~w~~f~Q  259 (1333)
                             +       +.+|+.    +.    ..++.+     +.-+..+++++++++++...+||+++.|=|+-|+...|
T Consensus       139 -------~-------~~~e~~----~~----~~~~e~-----~l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q  191 (990)
T PF11277_consen  139 -------E-------KLRENN----EL----SAEQEE-----ILEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQ  191 (990)
T ss_pred             -------H-------HHhhcC----CC----cchHHH-----HHHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHH
Confidence                   0       011110    00    122333     44567899999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHhhhccCCChHHHHHhhhhcccc--cCCCcc-ccCccceeeeccCCccccccccccCcccccccchhHHh
Q 000719          260 RLRLLALKSAALRNSKVITPEALLQLASDTRGD--LGRKSK-TAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLF  336 (1333)
Q Consensus       260 RLqllea~s~al~~~k~~~~~~l~~L~~~~~~v--~~~e~k-~~~~~~~~~~~~~~s~~s~~g~~~Gas~SAlWlPfDiy  336 (1333)
                      +..-|+......  .-+..+..+.+-..++...  ...+-+ .+..+..+.+   .++            =..+    |+
T Consensus       192 ~~~~l~~~l~~~--~~~~~~~tL~~~l~kl~sl~~~~~~m~~v~~~~~~e~~---~~s------------VqaL----I~  250 (990)
T PF11277_consen  192 KCAKLKNSLSNS--GFVKSNVTLRDQLEKLASLEKSIPSMKPVNSEQLSETI---FPS------------VQAL----IA  250 (990)
T ss_pred             HHHHHHHHhccc--ccccCchHHHHHHHHHHHHHhcCccccCCCcccCCCCC---cch------------HHHH----HH
Confidence            999988743331  1112344444444443331  111100 1111111100   000            0122    34


Q ss_pred             hhhccCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhhhhhhhhhHhh
Q 000719          337 LEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD  416 (1333)
Q Consensus       337 lEdaMDG~qv~~tSaIEiL~~liKtlQ~vN~asW~dtFlaLWiaaLRLVQReRdp~EGPiPhldsrLCMLLsI~pLaIa~  416 (1333)
                      +|-.|     +.++-++-+.+-...+|.+.+=++.+-|.=+|=|.+=-.-   |..||.   -|++.|   +.+-|=|=.
T Consensus       251 vE~ll-----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EIirACfl~L~---e~~~ts---~E~~w~---AFtFlKlPq  316 (990)
T PF11277_consen  251 VEVLL-----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEIIRACFLGLI---ESPETS---EELKWC---AFTFLKLPQ  316 (990)
T ss_pred             HHHHH-----ccCccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHH
Confidence            44433     4578888888888999999999999999999988775332   222444   578888   555455555


Q ss_pred             hhhhhhhhccccccCCCCCCCCCCCCCccchhhhHHHhhhhcccccccCCchhhhhHHHHHHHHHHHHHhccccCCCccc
Q 000719          417 IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYE  496 (1333)
Q Consensus       417 IieEe~~~~~~~~~~~p~~~~~~k~~~~~~R~~LisSLQvLG~y~gLL~PP~~vv~aANqAA~KAa~FiSg~~~~~g~~~  496 (1333)
                      ||.+=-......+   +++    +  ++.-..+++.++..|=++..||-                               
T Consensus       317 Il~~L~~~~~~~~---~~d----~--~~~~~~dl~~Afe~Ll~~~pLLD-------------------------------  356 (990)
T PF11277_consen  317 ILKQLHALSRGDK---PQD----K--IAEYSEDLVEAFELLLQLTPLLD-------------------------------  356 (990)
T ss_pred             HHHHHHHhccCCC---ccc----c--cccccHHHHHHHHHHHccchhhH-------------------------------
Confidence            5554333211000   011    1  34556789999999998888871                               


Q ss_pred             cccCCCCcccccCchhHHHHHHHhhhcccccc--ceecccccccCCCCCccCCccccCCCccccccCCCCChhhhhhhhc
Q 000719          497 SVSMNGLATSCLGNMRHLIVEACIARNLLDTS--AYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVV  574 (1333)
Q Consensus       497 ~~~~~d~~~~~~GNmrHLIVEaCIaRnLlDtS--~Y~WpGyv~~~~~~~~~~s~p~q~s~Ws~fM~GspLt~~L~naLv~  574 (1333)
                         .  +.+||.-|.--.+.|-|-..|||+-+  .++     ...+.         +.+++                   
T Consensus       357 ---~--~D~kc~Cn~v~~LL~e~~K~~lise~~~k~l-----~~kR~---------~~~~~-------------------  398 (990)
T PF11277_consen  357 ---K--MDQKCNCNCVECLLNELVKLGLISESQVKNL-----LAKRE---------EMSPG-------------------  398 (990)
T ss_pred             ---H--HhhhcCCcHHHHHHHHHHHcCcccHHHHHHH-----HHHhh---------hhhhh-------------------
Confidence               1  22578889999999999999999865  211     11000         00001                   


Q ss_pred             CCCCcHHHHHHHHHHHccCCchhhhhhhhhhcccccccccchhhHHHHHHHHhcCCCCCCCCCCCcccccchhhHHHHHH
Q 000719          575 TPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLL  654 (1333)
Q Consensus       575 tPAsSlaElEKly~iA~~GS~eEk~aAA~ILCGASL~RGWniQEH~v~~vvkLLSppvP~~~sg~~s~li~~~pmLn~ll  654 (1333)
                                 +++.- |+..  +.-.--||.          -|-++-=|+|.|+    +||+-...-+++   ||+-++
T Consensus       399 -----------l~~~~-n~~~--qp~~~lIlR----------AE~tl~~IlKtl~----ad~~k~~e~ll~---vL~~ml  447 (990)
T PF11277_consen  399 -----------LQKLE-NTNQ--QPNPKLILR----------AEPTLTGILKTLD----ADYSKSQEGLLG---VLCQML  447 (990)
T ss_pred             -----------hhhcc-cCCC--CCCcceEEe----------cccHHHHHHHHhc----cccccchHHHHH---HHHhhc
Confidence                       11111 1111  101111111          2667777888887    566543332222   344444


Q ss_pred             hcCCcccce-eeeccccchhhhHhhhhhhhhhhcCCCCCCCcccCCCCccchhhhHHHHHHHHHHHhhcCCCchhhcccC
Q 000719          655 VGISSVDCI-QIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVD  733 (1333)
Q Consensus       655 ~GissvD~v-hI~SlhGlvP~~Aa~LMPiCEvFGS~~P~~~~t~~~gee~S~~~VFS~AFl~LlRLWkF~~PPlE~l~~~  733 (1333)
                      +| +|.|.| -...--|=.+.+|..|.=+=|.--.+ |.-.-    -...+-...|=.-|+.|-|.=+-|-         
T Consensus       448 sG-~SfdlilAaAa~~GkLk~FaskLIk~Ne~~K~~-~~e~~----K~a~~Ra~LFDiSFLMLc~i~q~YG---------  512 (990)
T PF11277_consen  448 SG-KSFDLILAAAAVTGKLKSFASKLIKCNEFSKQI-SGEGS----KSAQTRALLFDISFLMLCSIVQTYG---------  512 (990)
T ss_pred             cC-CcHHHHHHHHHHcccHHHHHHHHHhhccccccC-Ccccc----ccchhHHHHHhhHHHHHHHHHHHcC---------
Confidence            43 344443 12233566777777777666654331 11110    0123445678888888877655442         


Q ss_pred             CCccccCCCchhhhhhcccccccCCCCccchhcccccccccccCCCcccccccchhhHHHhhhhh----HHHHhhhcccc
Q 000719          734 MPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEE----CIASTLTGLVH  809 (1333)
Q Consensus       734 g~~vgs~lt~eyLLllrN~~~~~~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLk~WY~Q~qa----CiAStlSgl~~  809 (1333)
                           +|.-+.                               .+.     |||  ...|+++.--    +. |.-..+..
T Consensus       513 -----sevvls-------------------------------e~~-----~Sf--Fe~Wv~~~m~e~~~~~-sP~~~~~~  548 (990)
T PF11277_consen  513 -----SEVVLS-------------------------------ENG-----DSF--FEKWVRECMPEEGKSK-SPDQPLAL  548 (990)
T ss_pred             -----CcEEEC-------------------------------CCC-----CcH--HHHHHHHhcccccCCC-Chhhhhhc
Confidence                 221000                               000     111  3456654210    00 00011111


Q ss_pred             CChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCCCCCccccccCCcchh-HHhhhhhhHHHHHHhhhccCCCCchh
Q 000719          810 GTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAW-DILEATPFVLDAALAACAHGRLSPRE  888 (1333)
Q Consensus       810 g~pvhqv~~~lL~mm~~K~nk~g~~~~~~ss~sSsSs~~~~dD~~~rp~lPAW-eiLEAvPfVlda~LTACaHGrLS~Rd  888 (1333)
                        |=...+|.+|+.+    |+                   ++  ..+|.---| ||--.+|.|+-=+|.|=-+|-+|.-|
T Consensus       549 --~d~~~vd~ll~~l----~~-------------------~~--~~k~~~~kW~eiC~~iP~~i~eiL~AwE~g~ls~~~  601 (990)
T PF11277_consen  549 --CDPAKVDSLLAQL----NS-------------------SQ--EFKLSQVKWHEICLNIPGAIKEILNAWENGTLSIEE  601 (990)
T ss_pred             --cCchhHHHHHHHh----cC-------------------cc--ccCcccCcHHHHHHhhHHHHHHHHHHHHhCcccHHH
Confidence              2234667777662    22                   12  244433445 78899999999999999999999988


Q ss_pred             h---hhhhhhhhhccc-hhHHHHHHHhh
Q 000719          889 L---ATGLKELSDCLP-ATLATVVSYFS  912 (1333)
Q Consensus       889 L---~TGLrdL~DFLP-ASlatIvSYfS  912 (1333)
                      +   +.++||=+-+|| .--|-+.+|-.
T Consensus       602 Vk~ild~ik~~~~~l~VCa~awLcay~~  629 (990)
T PF11277_consen  602 VKRILDNIKGKMCCLSVCAAAWLCAYMR  629 (990)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            5   778888777777 33445566654

It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
>PRK02866 cyanate hydratase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1333
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 5e-08
 Identities = 61/403 (15%), Positives = 116/403 (28%), Gaps = 112/403 (27%)

Query: 690  IPNASWTLSSGEEFSCYAVFSNAFTILVRL-WRFHKPPLEQLTVDMPLVASQLSPEYLLL 748
            + +   ++ S EE     +  +A +  +RL W       E   V    V   L   Y  L
Sbjct: 38   VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQK-FVEEVLRINYKFL 94

Query: 749  VRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGL- 807
            +  S + +    P    +     ++  ++ + +F     K      Q    +   L  L 
Sbjct: 95   M--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELR 148

Query: 808  ------VHGT-----SVHLIVDAL-----LTKMFRKINRSGTPLTSATSGSTNSSGSGLE 851
                  + G      +  + +D         KM  KI             + NS  + LE
Sbjct: 149  PAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVLE 200

Query: 852  DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPR----ELATGLKEL------SDCLP 901
                        +L+   + +D    + +    + +     +   L+ L       +CL 
Sbjct: 201  ------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL- 247

Query: 902  ATLATVVSYFSAEVTRGLWKP----AFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPT 957
              L          V   +       AF           NLS       KIL  T     T
Sbjct: 248  --L----------VLLNVQNAKAWNAF-----------NLSC------KILLTTRFKQVT 278

Query: 958  VAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASS-CPWPCMPIVAS 1016
              +   +   + L        ++T   D+     L  +      L          P   S
Sbjct: 279  DFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLS 331

Query: 1017 LWAQKVK----RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTS 1055
            + A+ ++     W+++          H N D +  +++S    
Sbjct: 332  IIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00