Citrus Sinensis ID: 000735
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | 2.2.26 [Sep-21-2011] | |||||||
| Q10251 | 1079 | Eukaryotic translation in | yes | no | 0.418 | 0.513 | 0.600 | 0.0 | |
| P39730 | 1002 | Eukaryotic translation in | yes | no | 0.398 | 0.525 | 0.577 | 0.0 | |
| O60841 | 1220 | Eukaryotic translation in | yes | no | 0.402 | 0.436 | 0.554 | 1e-180 | |
| Q05D44 | 1216 | Eukaryotic translation in | yes | no | 0.402 | 0.438 | 0.554 | 1e-179 | |
| B2GUV7 | 1216 | Eukaryotic translation in | yes | no | 0.402 | 0.438 | 0.554 | 1e-179 | |
| Q5RDE1 | 1220 | Eukaryotic translation in | yes | no | 0.402 | 0.436 | 0.540 | 1e-174 | |
| Q54XP6 | 1045 | Eukaryotic translation in | yes | no | 0.409 | 0.518 | 0.534 | 1e-174 | |
| A8A8D3 | 609 | Probable translation init | yes | no | 0.398 | 0.866 | 0.423 | 1e-118 | |
| A3DMS0 | 606 | Probable translation init | yes | no | 0.402 | 0.879 | 0.415 | 1e-113 | |
| Q9Y9B3 | 617 | Probable translation init | yes | no | 0.400 | 0.858 | 0.411 | 1e-109 |
| >sp|Q10251|IF2P_SCHPO Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/573 (60%), Positives = 439/573 (76%), Gaps = 19/573 (3%)
Query: 764 DAVTRKKEPAAKSKEPEVDATPKQA-------EENLRSPICCIMGHVDTGKTKLLDCIRG 816
DAV + SK +VD P+ A E +LRSPICCI+GHVDTGKTKLLD +R
Sbjct: 447 DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVDTGKTKLLDNLRR 506
Query: 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK--VPGLLVIDTPGHESFTNLR 874
+NVQEGEAGGITQQIGATYFP E+I+++T+ + L+ +PGLL+IDTPGHESFTNLR
Sbjct: 507 SNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESFTNLR 566
Query: 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934
SRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T F+VALNKVDRLYGW + ++ I
Sbjct: 567 SRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRLYGWHSIKDNAIQ 626
Query: 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994
++ +Q +Q EF R+ I+ QL EQG+N LY++NK+ G ++VPTSA SGEG+PD
Sbjct: 627 DSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFENKNLGRYVSLVPTSAQSGEGVPD 686
Query: 995 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1054
L+ LL+ TQ M +++ + L+CTVLEVKVIEG G TIDV+L NGVLHEGD+IV+CG+
Sbjct: 687 LVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLGATIDVILSNGVLHEGDRIVLCGM 746
Query: 1055 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114
GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G+KI A LE A+AG+ L VVGPD
Sbjct: 747 GGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLVVGPD 806
Query: 1115 DDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIG 1174
DD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK +KIPV+ ++IG
Sbjct: 807 DDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVASVNIG 864
Query: 1175 PVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1234
PV+KKDVMR + MLEK KEYA +L FDVKV +A +LAE+LGVKIF A++IYHLFD FTA
Sbjct: 865 PVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTA 924
Query: 1235 YINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC----I 1290
+ + E+K+ E++D AVFPCVLK + FNK+DPI+LGVDVVEG+ ++ TPI +
Sbjct: 925 HQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGVDVVEGVLRINTPIVAVKQL 982
Query: 1291 PQRD--FIDIGRIASIENNHKPVDTAKKGQKAA 1321
P + I++GR+AS+E NHKPVD KKGQ A
Sbjct: 983 PNGEPQIIELGRVASLEMNHKPVDKVKKGQAGA 1015
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN12 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/540 (57%), Positives = 409/540 (75%), Gaps = 13/540 (2%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 850
+LRSPICCI+GHVDTGKTKLLD IR TNVQ GEAGGITQQIGATYFP + I+ +T+ +
Sbjct: 402 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAE 461
Query: 851 N--ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
T VPGLLVIDTPGHESF+NLRSRGS LC+IAILV+DIMHGLE QTIES+ LL+ R
Sbjct: 462 YEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQTIESIKLLRDR 521
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
F+VALNK+DRLY WK N + +Q+ VQ EF R +I +L EQG+N+EL
Sbjct: 522 KAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEEFQSRYSKIQLELAEQGLNSEL 581
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIE 1028
Y++NK+ + +IVPTSA++GEG+PDLL LL++ TQK M ++L + + ++ T+LEVKV+E
Sbjct: 582 YFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVEATILEVKVVE 641
Query: 1029 GHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088
G GTTIDV+L NG L EGD+IV+CG+ GPIVT IRALLTP P++ELR+K Y+HHK++KA
Sbjct: 642 GFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYVHHKEVKA 701
Query: 1089 AQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAST 1148
A G+KI A LE A++G+ L VVGP+DD +++ ++ M+D+ ++ +D +G+GV VQAST
Sbjct: 702 ALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTTGKGVVVQAST 761
Query: 1149 LGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEA 1208
LGSLEALL+FLK +KIPV I +GPV+K+DVM+AS MLEK EYA +L FDVKV EA
Sbjct: 762 LGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVMLCFDVKVDKEA 819
Query: 1209 RELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKK 1268
+ AE+ G+KIF AD+IYHLFD FTAY L EE++++ D A+FPCVL+ L + NK+
Sbjct: 820 EQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKR 877
Query: 1269 DPIVLGVDVVEGIAKVGTPIC-------IPQRDFIDIGRIASIENNHKPVDTAKKGQKAA 1321
P+++GVDV+EG +VGTPIC +R + +G++ S+E NH+PV KKGQ AA
Sbjct: 878 GPMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPVQEVKKGQTAA 937
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Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4 | Back alignment and function description |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 298/537 (55%), Positives = 397/537 (73%), Gaps = 4/537 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQYIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKI 1161
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Homo sapiens (taxid: 9606) |
| >sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust.
Identities = 298/537 (55%), Positives = 397/537 (73%), Gaps = 4/537 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKI 1157
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Mus musculus (taxid: 10090) |
| >sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 630 bits (1625), Expect = e-179, Method: Compositional matrix adjust.
Identities = 298/537 (55%), Positives = 397/537 (73%), Gaps = 4/537 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKI 1157
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Rattus norvegicus (taxid: 10116) |
| >sp|Q5RDE1|IF2P_PONAB Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 614 bits (1584), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/537 (54%), Positives = 392/537 (72%), Gaps = 4/537 (0%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHG EPQ ++ NL K
Sbjct: 687 NFGRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGGEPQKMKPTNLPKP 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ F+VALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFMVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ + AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEKFKHIAVFPCKMKILPQYIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKI 1161
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Pongo abelii (taxid: 9601) |
| >sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1 | Back alignment and function description |
|---|
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/548 (53%), Positives = 396/548 (72%), Gaps = 6/548 (1%)
Query: 779 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 838
P D T A+++ RSPI CI+GHVDTGKT LLD IR TNVQ GEA GITQQIGA++ P
Sbjct: 445 PTTDPTTTFADKSYRSPIICILGHVDTGKTSLLDKIRNTNVQGGEARGITQQIGASFIPV 504
Query: 839 ENIRERTREL--KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 896
+ I+E+T+ K K+PGLL+IDTPGHESF NLRSRGSGLCD+AILV+DIMHGL+
Sbjct: 505 DAIKEQTKSFAEKIKMDFKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLQA 564
Query: 897 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956
QT+ES+NLL+MR T FIVALNKVDR+Y WK C N +A K Q+ EF+ ++ I+
Sbjct: 565 QTLESINLLRMRKTPFIVALNKVDRIYDWKPCVNTDFKEAYKIQSKSAAQEFDYKVKDII 624
Query: 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE 1016
L Q +N ELY++NKD + ++VPTSA +GEGI DL+L+++Q QK M++K+ F N+
Sbjct: 625 AALAGQELNAELYWRNKDHRKYVSLVPTSANTGEGISDLMLVVIQLMQKLMLDKVEFTNQ 684
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1076
LQCT+LEVKVIEG GTTIDVVLVNG L+EGD+IVV G GPI T+IR+LLTP P++E RV
Sbjct: 685 LQCTLLEVKVIEGFGTTIDVVLVNGTLNEGDKIVVSGFNGPIETSIRSLLTPPPLRESRV 744
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRID 1136
K +++HK I+AA GIKI A GLE A+ GT L+VVGP+DD+E ++ EA ++ SV++ ++
Sbjct: 745 KSQFINHKSIRAAMGIKIVAPGLEKAVPGTSLHVVGPNDDIEKIRAEAKREVDSVLNDVE 804
Query: 1137 KSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYAT 1196
SG GV VQASTLGSLEA L FLK +KIPV+ ++IGPVHKK +M AS+ML+K +YA
Sbjct: 805 TSGIGVSVQASTLGSLEAFLNFLKK--IKIPVANVAIGPVHKKHIMNASIMLDKDPKYAI 862
Query: 1197 ILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCV 1256
+LAFDVK+ A + A E+ V++ + IY ++ + +KE+ + E A V+PC+
Sbjct: 863 LLAFDVKIEESAIQAANEMKVQVLSDETIYLFEEKLKKHFGAIKEKLRAETASICVWPCI 922
Query: 1257 LKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKK 1316
L++ VF +PI++GV V EG ++GTPIC+P+ + D+G++ I+ N K V AKK
Sbjct: 923 LEV--TNVFRNSNPILVGVRVKEGTLRIGTPICVPESNCADVGKVIGIKLNEKDVTLAKK 980
Query: 1317 GQKAAIKV 1324
++ +
Sbjct: 981 DDVVSVAI 988
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Dictyostelium discoideum (taxid: 44689) |
| >sp|A8A8D3|IF2P_IGNH4 Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/538 (42%), Positives = 345/538 (64%), Gaps = 10/538 (1%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK- 849
LR PI ++GHVD GKT LLD IRGT V E G ITQ IGA+ P + I + T LK
Sbjct: 11 RLRQPIVAVLGHVDHGKTTLLDKIRGTVVALKEPGQITQHIGASLVPTDVIEKVTEPLKK 70
Query: 850 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L++PGLL IDTPGHE F+NLR RG + D+AILVVD+ G +PQT E++ +LK
Sbjct: 71 IIPTVKLELPGLLFIDTPGHEIFSNLRRRGGAVADLAILVVDLNEGFQPQTYEAVEILKQ 130
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
R F+VA NK+DR+ GW++ + P + + ++Q+ +V+ + ++ +I+ +L + G ++E
Sbjct: 131 RRVPFVVAANKIDRIPGWRSYPDQPFLISYRKQSEEVRERLDNKIYEIMGELAKLGFDSE 190
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEVKV 1026
+ + + IVP SA +GEGIP+LL +L Q+ M +L + + ++EVK
Sbjct: 191 RFDRITNFTRQIAIVPISAKTGEGIPELLAVLAGLAQRYMKGRLKYVEGPAKGVIMEVKE 250
Query: 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086
G+G+TID ++ +G++ +GD IVV G++GPIVT +RALL P P+ E+R + +++
Sbjct: 251 EPGYGSTIDTIIYDGIIRQGDTIVVGGIEGPIVTKVRALLVPAPLTEMRATKRFEPVEEV 310
Query: 1087 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1146
AA G+KI A GLE A+AG +YVV + LE++KE+ +++ VM DK EGV V+A
Sbjct: 311 SAAAGVKIVAPGLEKAVAGAPVYVVDSPEKLEELKEQVKREVEEVMIETDK--EGVIVKA 368
Query: 1147 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
TLG+LEAL++FLK+ IPV +GPV K+D++ A + K KEY ILAF+VKV P
Sbjct: 369 DTLGTLEALVQFLKNRG--IPVRMARVGPVTKRDIVEAMTVKSKNKEYGVILAFNVKVLP 426
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
EA+ELAE+ G+KIF ++IY L ++F ++ L+EE+KR+ + V P ++ILP VF
Sbjct: 427 EAKELAEKEGIKIFQHNVIYRLIEEFEEWLKALREEEKRKVLETLVRPGKIRILPGFVFR 486
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+ DP ++GV+V+ G+ K P+ + D +G I I++ + V A+ GQ+ AI +
Sbjct: 487 RSDPAIVGVEVLGGVIKPKYPLM--KEDGSRVGSILQIQDKGQSVPEARAGQQVAISI 542
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) (taxid: 453591) |
| >sp|A3DMS0|IF2P_STAMF Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/544 (41%), Positives = 338/544 (62%), Gaps = 11/544 (2%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 845
K + +R PI ++GHVD GKT LLD IRGT V + E G ITQ +GA+ PA +R+
Sbjct: 5 KSGKSWIRQPIVVVLGHVDHGKTTLLDKIRGTAVAKKEPGEITQHVGASIVPASVLRKVA 64
Query: 846 RELK---ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
LK +++PGLL +DTPGHE F+NLR RG + DIAILVVDIM G +PQT ES+
Sbjct: 65 EPLKKYFPKLKIEIPGLLFVDTPGHELFSNLRRRGGSVADIAILVVDIMEGFQPQTWESI 124
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
+LK R FIVA NK+DR+ GWK + P ++ I++Q+ + + + ++++QL E
Sbjct: 125 QILKERKVPFIVAANKIDRIPGWKPNHDQPFLETIRKQDPRIVSRLEELIYRLISQLYEA 184
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE-LQCTV 1021
G E + + KD T IVP SA +GEG+P+LL LL Q+ M ++L E + V
Sbjct: 185 GFMAERFDRVKDFRTTVAIVPVSAKTGEGVPELLALLTGLVQRFMKKRLVTSEEPAKGVV 244
Query: 1022 LEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTY 1080
LEVK G GTTIDV++ +GV+ GD IVV G PIVT +RALL P P++++R G +
Sbjct: 245 LEVKEEPGLGTTIDVIIYDGVIRRGDTIVVGGKDKPIVTKVRALLMPRPLQDMRAHEGKF 304
Query: 1081 LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGE 1140
+ +Q+ AA G+KI+A L++A+AG+ ++VV +D +E+ + E+++SV RI
Sbjct: 305 VSVEQVVAATGVKISAPDLDNALAGSPIFVVPSEDKIEEYIKIVKEEIESV--RIKTDNI 362
Query: 1141 GVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1200
GV V+A TLG+LEA++E LK + IPV +GPV K DV+ ASV + EY I+AF
Sbjct: 363 GVVVKADTLGTLEAVVEALKRE--NIPVRLADVGPVSKNDVLEASVSKNHRPEYGVIIAF 420
Query: 1201 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKIL 1260
+VK+ PEA E A VKIF ++IY L + + ++ L+E++K + + + P ++IL
Sbjct: 421 NVKILPEAEEYAARENVKIFRHNVIYKLIEDYIGWVKQLREQEKIKELESLIRPGKIRIL 480
Query: 1261 PNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKA 1320
P +F + +P ++GV+V+ G+ K G P+ ++D + +G I I + + A+ GQ
Sbjct: 481 PGYIFRRSNPAIVGVEVIGGVIKPGYPLM--RKDGMRLGTIMQIRDRDNVLKEARAGQSV 538
Query: 1321 AIKV 1324
AI +
Sbjct: 539 AISI 542
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550) |
| >sp|Q9Y9B3|IF2P_AERPE Probable translation initiation factor IF-2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/540 (41%), Positives = 328/540 (60%), Gaps = 10/540 (1%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 848
E LR PI ++GHVD GKT LLD IR T V EAGGITQ IGA+ PA+ I + L
Sbjct: 11 ERRLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPL 70
Query: 849 K--ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 906
K L +PGLL IDTPGHE F+NLR RG + D AILVVDIM G +PQT E+L LLK
Sbjct: 71 KKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELLK 130
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
R F++A NK+DR+ GWK +AP ++ I++Q+ V+ R+ +IV ++ E G+
Sbjct: 131 ERRVPFLIAANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLPA 190
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEVK 1025
EL+ + KD IVP SA +GEGIP+LL +L TQ + E+L + + VLEVK
Sbjct: 191 ELFTRIKDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVK 250
Query: 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTYLHHK 1084
++G GT +D V+ +GVL + D IVV G +GPIVT +RALL P P++++R + ++
Sbjct: 251 EMQGFGTVVDAVIYDGVLKKEDIIVVGGREGPIVTRVRALLMPAPLQDIRSREARFVQVD 310
Query: 1085 QIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCV 1144
++ AA G++I A GL+ IAG+ +Y +++ + E +++ + R + GV V
Sbjct: 311 RVYAAAGVRIAAPGLDDVIAGSPIYAAESEEEARKLMEAVQREIEELRFRTENI--GVVV 368
Query: 1145 QASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKV 1204
+A TLG+LEAL+E L+ V PV IGPV + DV+ A+V + +LAF+VKV
Sbjct: 369 KADTLGTLEALVEALRRRGV--PVRLADIGPVSRSDVLDAAVTRKIDPYLGVVLAFNVKV 426
Query: 1205 TPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264
PEA E A GVKIF +IY L + + ++ KE ++ +A + + P +ILP V
Sbjct: 427 LPEAEEEASRAGVKIFRESMIYKLIEDYEEWVKKEKEAERLKALNSLIRPGKFRILPGYV 486
Query: 1265 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
F + DP ++GV+V+ G+ + G P+ Q ++GRI +I++ + ++ A+ G A+ +
Sbjct: 487 FRRSDPAIVGVEVLGGVIRPGYPVMDSQGR--ELGRIMAIKDRDRSLEEARLGAAVAVSI 544
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | ||||||
| 359493041 | 1393 | PREDICTED: uncharacterized protein LOC10 | 0.815 | 0.775 | 0.700 | 0.0 | |
| 224120424 | 1331 | predicted protein [Populus trichocarpa] | 0.703 | 0.699 | 0.753 | 0.0 | |
| 449443744 | 1370 | PREDICTED: uncharacterized protein LOC10 | 0.711 | 0.687 | 0.726 | 0.0 | |
| 449475431 | 1370 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.711 | 0.687 | 0.725 | 0.0 | |
| 357443693 | 1438 | Eukaryotic translation initiation factor | 0.802 | 0.739 | 0.674 | 0.0 | |
| 297842433 | 1252 | hypothetical protein ARALYDRAFT_895554 [ | 0.790 | 0.836 | 0.644 | 0.0 | |
| 255574361 | 1263 | translation initiation factor if-2, puta | 0.879 | 0.921 | 0.600 | 0.0 | |
| 6143896 | 1280 | putative translation initiation factor I | 0.789 | 0.816 | 0.655 | 0.0 | |
| 42563275 | 1294 | translation initiation factor eIF-5B [Ar | 0.790 | 0.808 | 0.649 | 0.0 | |
| 23452071 | 861 | translation initiation factor [Pisum sat | 0.555 | 0.854 | 0.753 | 0.0 |
| >gi|359493041|ref|XP_002267014.2| PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1283 bits (3319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1173 (70%), Positives = 923/1173 (78%), Gaps = 93/1173 (7%)
Query: 228 DKDEEDEP--VIFTDKKKKSKKSGKNS-STFDLLVNENDDV------KEDKDE-DDEPIT 277
+K E D+P + FT KKK SK + K S+FD+L +E D + ++ DE DD P+
Sbjct: 178 NKSENDDPPVIAFTGKKKSSKGNKKGGVSSFDVL-DEADGIDSTISEQQSVDEADDAPVI 236
Query: 278 FTDKKKKSNK-----GGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSK 332
FT KKK S G +S+F+ L D+D DEK ++DE+ I F+ KKK + SSK
Sbjct: 237 FTGKKKSSKANKKGGGNVFAASSFEGLGEGDKDSDEKNEEDEDIASIAFSGKKKSSNSSK 296
Query: 333 KTVSSFS----------EVLLDEENVVED--------------------APVLS------ 356
KT + FS +V + E VED VLS
Sbjct: 297 KTSNIFSVASDDEDKDEDVSVSEAAQVEDEEDASKIAFSGKKKSSKKKNNNVLSETGLGT 356
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKG-EVVAQTSKNKKKKKEKEKPRSERTAQEEDDL 415
D++ V+++Q S + E +D K NK V +TSKNKKKKK +S RTAQEEDDL
Sbjct: 357 DLADVVESEQPSVGTVDNEGNDSKSNKQVSGVVETSKNKKKKK-----KSGRTAQEEDDL 411
Query: 416 EKILAELGQGPA------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKK 469
+KILAELG+G + PQEEKVQVQP EPV DA EK GEEE ESAA+KKKKKKK
Sbjct: 412 DKILAELGEGSSSLKPTTPQEEKVQVQP-EPVQAADATVEKEGEEEGVESAAAKKKKKKK 470
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
EKEKEKKAAAAA G E E K+ + KSK P+KK+ K VREMQEALARRKEAEE
Sbjct: 471 EKEKEKKAAAAA----AAAGAVEVKEEKQVETKSKVPDKKLPKHVREMQEALARRKEAEE 526
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKKREEEERLRKEEEER+R EELER AEEAKRRKKE+EKEKLLKKKQEGKLLTGKQKEEA
Sbjct: 527 RKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEA 586
Query: 590 RRLEAMRNQFLAK--GIPLPTGDKEAASKRPKYQTKKKSAH-HQANGAVPLKEDSIESKE 646
RR EAMRNQ LA G+P+ TGD A +KRPKYQTKK +H QANGA P K D E+ E
Sbjct: 587 RRREAMRNQILANAGGLPISTGD--APTKRPKYQTKKVKSHPSQANGAAPSKPD--ENTE 642
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
++ ET+ EVD E EK+EE +S+ VEEK EI +A +EN VEEE+DD++ + AKSWD
Sbjct: 643 AKESLPETVSEVDSLEPEKLEEVDSVDVEEKLEITNATEENGVEEEEDDEEWD--AKSWD 700
Query: 707 D--VNLNVKGAFDDEEADSEPEPLVKKEIK-SAIPSPRD-----AAEKPAVAVKKAIPEQ 758
D V L K AF DEEADSE EP+V+KE K +A+P+ R+ AA K ++ K A+P Q
Sbjct: 701 DAVVTLPDKSAFADEEADSETEPVVRKETKVAALPASRNVGVTTAAAKTSIVPKTAVPTQ 760
Query: 759 PLKSQDAVTRKKE-------PAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLL 811
P+K+QD + K + + K P DA+P+ EENLRSPICCIMGHVDTGKTKLL
Sbjct: 761 PIKTQDVRSEKSQIEIEVTNKSRKKAAPSSDASPQGTEENLRSPICCIMGHVDTGKTKLL 820
Query: 812 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871
DCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFT
Sbjct: 821 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADANLKVPGLLVIDTPGHESFT 880
Query: 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931
NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK CRN+
Sbjct: 881 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNS 940
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
PI KA+KQQ+ DVQNEFNMRL QI+TQ KEQG+NTELYYKNK+ GETF+IVPTSAISGEG
Sbjct: 941 PIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEG 1000
Query: 992 IPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV 1051
IPDLLLLLV WTQKTMVEKLT+ +E+QCTVLEVKV+EGHGTTIDVVLVNGVLHEGDQIVV
Sbjct: 1001 IPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVV 1060
Query: 1052 CGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111
CG+QGPIV TIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV
Sbjct: 1061 CGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1120
Query: 1112 GPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGI 1171
GPDDDLED+KE AMEDMKSV+SRIDKSGEGV VQASTLGSLEALLEFLKS AV IPVSGI
Sbjct: 1121 GPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGI 1180
Query: 1172 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQ 1231
IGPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+++GVKIFIADIIYHLFDQ
Sbjct: 1181 GIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQ 1240
Query: 1232 FTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIP 1291
F AYI+NLKEEKKREAADEAVFPCVLKI+PNC+FNKKDPIVLGVDV+EGIAKVGTPICIP
Sbjct: 1241 FKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIP 1300
Query: 1292 QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
QRDFIDIGRIASIENNHKPVD AKKGQ+ AIK+
Sbjct: 1301 QRDFIDIGRIASIENNHKPVDIAKKGQRVAIKI 1333
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120424|ref|XP_002318326.1| predicted protein [Populus trichocarpa] gi|222858999|gb|EEE96546.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1244 bits (3218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/982 (75%), Positives = 818/982 (83%), Gaps = 51/982 (5%)
Query: 372 SIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA---- 427
+IVE++D KV K E VA+TSKNKKKKK K S RTAQEEDDL+KILAELG G +
Sbjct: 312 NIVEANDSKVTKSEAVAETSKNKKKKKGK----SGRTAQEEDDLDKILAELGGGASTLKP 367
Query: 428 ----PQEEKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
PQEEK+ VQP EPVA PDA E+ EE KKK+K+KEK+ AAA
Sbjct: 368 SESPPQEEKLNVQP-EPVAVPDALVEKEGEEEKEESAAAKKKKKKKEKEKEKKVAAAAAA 426
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
AA E ++ K+E E KK D K K EKK+ K VREMQEALARRKE EERK +EEEE+
Sbjct: 427 AAKEEKLEEAKAETSEPKKTDAKGKAAEKKLPKHVREMQEALARRKEMEERKAKEEEEKR 486
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
RKEEEER R EELERQAEEA+RRKKE+EKEKLLKKKQEGKLLTGKQKEE RRLEAMRNQ
Sbjct: 487 RKEEEERLRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQI 546
Query: 600 LAK-GIPLPTGDKE-AASKRPKYQTKK-KSAHHQANGAVPLK-EDSIESKEKEQEKQETL 655
LA GI +PT D++ A +KRP+YQTKK K AHHQANG +K E+ +E+K KEQE+QE +
Sbjct: 547 LANAGITVPTADRDNAPTKRPRYQTKKSKPAHHQANG---IKIEEHVEAKGKEQEEQEEV 603
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
EV+ E EK E E EEK E+A P+EN +EE+DDD EEWDAKSWDDVNLNVKGA
Sbjct: 604 HEVETVELEKAEPVE----EEKTEVASVPEENGMEEDDDD--EEWDAKSWDDVNLNVKGA 657
Query: 716 FDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDA---------- 765
FDDEE DSEPEP++KKE KS++P+ R A KPA+AV+K + QP+ S+D
Sbjct: 658 FDDEE-DSEPEPVLKKETKSSVPASRGADAKPAIAVRKPVTSQPMDSRDVENKKIQTEVE 716
Query: 766 ---VTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG 822
RKK+ A K+K DA PKQ EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG
Sbjct: 717 VSDKNRKKDAAVKNKGAVSDAIPKQGEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG 776
Query: 823 EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCD 882
EAGGITQQIGATYFPAENIRERT+ELKA+A L VPGLLVIDTPGHESFTNLRSRGSGLCD
Sbjct: 777 EAGGITQQIGATYFPAENIRERTKELKADAKLNVPGLLVIDTPGHESFTNLRSRGSGLCD 836
Query: 883 IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942
IAILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLY WK RNAPI KA+KQQ+
Sbjct: 837 IAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYAWKAQRNAPIRKALKQQSK 896
Query: 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
DVQNEF+ RL++++TQ KEQG+NTELYYKNKD GETFNIVPTSAISGEGIPDLLLLL+QW
Sbjct: 897 DVQNEFDRRLMEVITQFKEQGLNTELYYKNKDMGETFNIVPTSAISGEGIPDLLLLLIQW 956
Query: 1003 TQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062
+QKTM+EKLTFRNE CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV GPIVTTI
Sbjct: 957 SQKTMIEKLTFRNE--CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV-----GPIVTTI 1009
Query: 1063 RALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKE 1122
RALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGTGLYVVG DDD+EDVKE
Sbjct: 1010 RALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTGLYVVGRDDDVEDVKE 1069
Query: 1123 EAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVM 1182
AMEDMKSVMSRIDK+GEGV VQASTLGSLEALLEFLKS AV IPVSGI IGPVHKKDVM
Sbjct: 1070 SAMEDMKSVMSRIDKTGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVM 1129
Query: 1183 RASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEE 1242
++SVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI NLKEE
Sbjct: 1130 KSSVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIQNLKEE 1189
Query: 1243 KKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIA 1302
KKREAADEAVFPCVL+I+P C+FNKKDPI+LGVDV+EGI KVGTP+C+PQ+++IDIGRIA
Sbjct: 1190 KKREAADEAVFPCVLEIIPECIFNKKDPIILGVDVLEGILKVGTPLCVPQKEYIDIGRIA 1249
Query: 1303 SIENNHKPVDTAKKGQKAAIKV 1324
SIE N K VD AKKGQK AIK+
Sbjct: 1250 SIEFNKKSVDYAKKGQKVAIKI 1271
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443744|ref|XP_004139637.1| PREDICTED: uncharacterized protein LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/988 (72%), Positives = 819/988 (82%), Gaps = 46/988 (4%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAIP--SPRDAAEKPAVAV--KKAIPEQPLKSQDAVTRK 769
+F DEE +SEPE +KK+ K+ + ++ + A+A +K +P Q +KSQD +K
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKALAAPSQKGLPSQSIKSQDIENKK 742
Query: 770 K-------------EPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 816
K E A + K DATP Q EENLRSPICCIMGHVDTGKTKLLDCIRG
Sbjct: 743 KQDGVEVADKGKRKEDAVRKKASISDATPVQQEENLRSPICCIMGHVDTGKTKLLDCIRG 802
Query: 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876
TNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A LKVPGLL+IDTPGHESFTNLRSR
Sbjct: 803 TNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSR 862
Query: 877 GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936
GSGLCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWK+ RNAPI+K
Sbjct: 863 GSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKSIRNAPILKT 922
Query: 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
+KQQ DVQNEFNMRL+QI+TQ KEQG+NTELYYKNK+ GETF+IVPTSA++GEGIPD+L
Sbjct: 923 MKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDML 982
Query: 997 LLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG 1056
LLLVQW QKTM +KLT+ +E+QCTVLEVKV+EGHGTTIDV+LVNGVLHEGDQIVVCG+QG
Sbjct: 983 LLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQG 1042
Query: 1057 PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDD 1116
PIVT+IRALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGT L+VVGP+DD
Sbjct: 1043 PIVTSIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDD 1102
Query: 1117 LEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPV 1176
LED+K+ AMEDMKSV+SRIDK+GEGVCVQASTLGSLEALLEFLKS AV IPVSGISIGPV
Sbjct: 1103 LEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPV 1162
Query: 1177 HKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYI 1236
HKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI
Sbjct: 1163 HKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYI 1222
Query: 1237 NNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFI 1296
+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKDPIVLGVDV+EGIAKVGTPICIPQR+FI
Sbjct: 1223 DNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFI 1282
Query: 1297 DIGRIASIENNHKPVDTAKKGQKAAIKV 1324
DIGRIASIENNHKPVD AKKGQK AIK+
Sbjct: 1283 DIGRIASIENNHKPVDYAKKGQKIAIKI 1310
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475431|ref|XP_004154455.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1197 bits (3097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/988 (72%), Positives = 818/988 (82%), Gaps = 46/988 (4%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKXAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAIP--SPRDAAEKPAVAV--KKAIPEQPLKSQDAVTRK 769
+F DEE +SEPE +KK+ K+ + ++ + A+A +K +P Q +KSQD +K
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKALAAPSQKGLPSQSIKSQDIENKK 742
Query: 770 K-------------EPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 816
K E A + K DATP Q EENLRSPICCIMGHVDTGKTKLLDCIRG
Sbjct: 743 KQDGVEVADKGKRKEDAVRKKASISDATPVQQEENLRSPICCIMGHVDTGKTKLLDCIRG 802
Query: 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876
TNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A LKVPGLL+IDTPGHESFTNLRSR
Sbjct: 803 TNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSR 862
Query: 877 GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936
GSGLCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWK+ RNAPI+K
Sbjct: 863 GSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKSIRNAPILKT 922
Query: 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
+KQQ DVQNEFNMRL+QI+TQ KEQG+NTELYY NK+ GETF+IVPTSA++GEGIPD+L
Sbjct: 923 MKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYXNKEMGETFSIVPTSAVTGEGIPDML 982
Query: 997 LLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG 1056
LLLVQW QKTM +KLT+ +E+QCTVLEVKV+EGHGTTIDV+LVNGVLHEGDQIVVCG+QG
Sbjct: 983 LLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQG 1042
Query: 1057 PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDD 1116
PIVT+IRALLTPHPMKELRVKGTYLHHK+IKAAQGIKIT QGLEHAIAGT L+VVGP+DD
Sbjct: 1043 PIVTSIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDD 1102
Query: 1117 LEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPV 1176
LED+K+ AMEDMKSV+SRIDK+GEGVCVQASTLGSLEALLEFLKS AV IPVSGISIGPV
Sbjct: 1103 LEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPV 1162
Query: 1177 HKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYI 1236
HKKDVM+ASVMLEKKKEYATILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI
Sbjct: 1163 HKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYI 1222
Query: 1237 NNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFI 1296
+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKDPIVLGVDV+EGIAKVGTPICIPQR+FI
Sbjct: 1223 DNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFI 1282
Query: 1297 DIGRIASIENNHKPVDTAKKGQKAAIKV 1324
DIGRIASIENNHKPVD AKKGQK AIK+
Sbjct: 1283 DIGRIASIENNHKPVDYAKKGQKIAIKI 1310
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357443693|ref|XP_003592124.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] gi|355481172|gb|AES62375.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1128 (67%), Positives = 876/1128 (77%), Gaps = 65/1128 (5%)
Query: 229 KDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKED------KDEDDEPITFTDKK 282
K +EDEPV+F+ KKK SK K +S+ ++ENDD +E+ +D+DDEPITF+ KK
Sbjct: 187 KSDEDEPVVFSGKKKPSKGWKKGASSLFSALDENDDGEEESKNEKVEDDDDEPITFSGKK 246
Query: 283 KKSNK----GGRMRSSAF---DLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTV 335
KKS+K G S A D + + +KDE+D FT KKK +K +
Sbjct: 247 KKSSKGSKKAGVSLSKAIPEEDSVSVSESAKGGDYEKDEDDVSFAFTGKKKSSKKKSGSA 306
Query: 336 SSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKK 395
++ V ++ S+ V+ ++ S D+ ++K E V TSKNKK
Sbjct: 307 AA---------KVSDEIEFGSESVNVVEAEKPSVDNG-------NISKSEEVVGTSKNKK 350
Query: 396 KKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQ---------EEKVQVQPPEPV--APP 444
K K+K S RT +EEDDL+K+LAELG+ PA ++KVQ P PV + P
Sbjct: 351 KNKKK----SGRTKEEEDDLDKLLAELGEAPATAQPAAAPPQQDDKVQ---PVPVVGSAP 403
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA----AAAAAEDKQQGKSEAVETKKND 500
A+ EK GE+E ESAA+KKKKKKKEKEKEKKAA +A + + K+EA+E KKND
Sbjct: 404 GASGEKEGEDETVESAATKKKKKKKEKEKEKKAAAAAAGSAPVVEAVEEKAEAIEPKKND 463
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
K+K +KK+ K VREMQE LARRKEAEE+KK+EEEE+ RKEEEER+R+EELERQAEEAK
Sbjct: 464 SKTKAADKKVPKHVREMQELLARRKEAEEKKKKEEEEKQRKEEEERRRIEELERQAEEAK 523
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRP 618
RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMR Q L G+ LP D SK+P
Sbjct: 524 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPGADTGGPSKKP 583
Query: 619 KYQTKK-KSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEK 677
YQTKK KS + NGA +K E+ E ET ++D E EKVEE ES+ +E+K
Sbjct: 584 IYQTKKGKSTNRNHNGAAAVK------TEENVEATETTADLDTEELEKVEEVESVQMEDK 637
Query: 678 PEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
E+ + EV +EDDD ++EWDAKSWDDVNLN +GAF DEE DSEPEP+VKKEIK+ I
Sbjct: 638 VELPEV--VEEVVDEDDDVEDEWDAKSWDDVNLNDRGAFADEEVDSEPEPIVKKEIKNGI 695
Query: 738 PSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATP-KQAEENLRSPI 796
PS A K A E + Q E K +P++ A P K +E NLRSPI
Sbjct: 696 PSKNAAGATNKPVTKPAAEETEDRKQ--AKVVVEDKKKKHDPQLSAVPSKPSEGNLRSPI 753
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+ATLKV
Sbjct: 754 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKV 813
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
PGLLVIDTPGHESF NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL
Sbjct: 814 PGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 873
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
NKVDRLYGWKTCRNAPI KA+ QQ+ DVQNEFNMR+ QIVTQ KEQG+NTELYYKNK+ G
Sbjct: 874 NKVDRLYGWKTCRNAPIRKAMTQQSKDVQNEFNMRVTQIVTQFKEQGLNTELYYKNKEMG 933
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDV 1036
ETF+IVPTSAISGEGIPD+LLLLVQWTQKTM EKLT+ E+QCTVLEVKVIEGHGTTIDV
Sbjct: 934 ETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDV 993
Query: 1037 VLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096
VLVNGVLHEGDQIVV G+QGPIVTTIRALLTPHPMKELRVKG+Y+HHK+IKAA GIKITA
Sbjct: 994 VLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITA 1053
Query: 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALL 1156
QGLEHAIAG LYVV PDDDLE +K+ A+ED++SV+SRID+SGEGVCVQASTLGSLEALL
Sbjct: 1054 QGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALL 1113
Query: 1157 EFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELG 1216
EFLK+ V IPVS I+IGPVHKKDVM+ASVMLEKK+EYATILAFDVKVTPEAR+LAEELG
Sbjct: 1114 EFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELG 1173
Query: 1217 VKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVD 1276
VKIFIADIIYHLFDQF AY++N+KEEKK+E+ADEAVFPCVLKILPNCVFNKKDPIVLGVD
Sbjct: 1174 VKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVD 1233
Query: 1277 VVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
++EGI K+GTPICIP ++FIDIGRIASIENNHKPVD AKKGQK AIK+
Sbjct: 1234 ILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKI 1281
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842433|ref|XP_002889098.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] gi|297334939|gb|EFH65357.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1118 (64%), Positives = 838/1118 (74%), Gaps = 71/1118 (6%)
Query: 254 TFDLLVN--ENDDVKEDKDEDDEP-ITFTDKKKKSNKGGR-MRSSAFDLLENEDEDDDEK 309
+F LL + E DD + + D+DDEP I+FT KK SNKG + SAFD L + D+EK
Sbjct: 100 SFALLADKEEEDDNESNGDKDDEPVISFTGKKHASNKGKKGFAVSAFDALGGDK--DEEK 157
Query: 310 KDKDEED-EPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQS 368
D DEE PIIF+ KKKK+ S K ++ LLDEE +D S + K
Sbjct: 158 VDGDEEQVYPIIFSGKKKKSSKSSKKTTN-KVALLDEEEG-------TDASTSRLGKNTM 209
Query: 369 GDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSE---------------------- 406
GD +E KG V + + E + ++
Sbjct: 210 GDEESLEITFSGKKKGSSVLASVGDDSVAYETSQAKTPDTKSVEVIETGKSKKKKKKNKS 269
Query: 407 -RTAQEEDDLEKILAELGQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
RTA+EE D + +L E G+ PA P EEKVQ QP PVAP + ADEK GEEE
Sbjct: 270 GRTAEEEYDFDNVLEEFGETPAAGRPASSTPGEEKVQAQPG-PVAPVENADEKEGEEETV 328
Query: 458 ESAASKKKKKKKEKEKEKK------AAAAAAAEDKQQ-GKSEAVETKKNDGKSKGPEKKM 510
++AA+KKKKKKKEKEKEKK ++ A E KQ+ +E ++ KK D K K EKK+
Sbjct: 329 KTAAAKKKKKKKEKEKEKKAAAAAATSSVEAKEGKQEESVTEPLQEKKKDAKGKAAEKKI 388
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
K V+EMQEALARR+EAEERKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEK
Sbjct: 389 PKHVKEMQEALARRQEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEK 448
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSA 627
LL+KKQEGKLLT KQK EA + EA +NQ LA G LP D + +SKRP Y KKKSA
Sbjct: 449 LLRKKQEGKLLTAKQKSEALKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSA 508
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
H + +ED +E KE + ++ +TL EV + +T KV+ ES +EK E AD +EN
Sbjct: 509 HQKGIDTYVQREDEVEPKENKADEPDTLGEVGLTDTGKVDLIESANTDEKSEPADVAQEN 568
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAA-EK 746
+EE+D EWDAKSWD V+LN+KG FDDEE EP+P+VKKE+K A+ D+ K
Sbjct: 569 GIEEDD-----EWDAKSWDTVDLNLKGEFDDEE--EEPQPVVKKELKDAVSKAHDSGMSK 621
Query: 747 PAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTG 806
P AV KA+ E + A K+ K P ++ ENLRS ICCIMGHVDTG
Sbjct: 622 PRTAVVKAMSE----VEHATPTKRAKKGKGLAP--SEFIEEGGENLRSIICCIMGHVDTG 675
Query: 807 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866
KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA+A +KVPGLLVIDTPG
Sbjct: 676 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKIKVPGLLVIDTPG 735
Query: 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926
HESFTNLRSRGS LCD+AILVVDIMH LEPQTIESL+LL+MRNTEFIVALNKVD LYGWK
Sbjct: 736 HESFTNLRSRGSSLCDLAILVVDIMHELEPQTIESLSLLRMRNTEFIVALNKVDLLYGWK 795
Query: 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSA 986
TC+NAPIVKA+KQQ+ DV NEFN+RL +I+TQ KEQG+NTELYYKNK+ GETF+IVPTSA
Sbjct: 796 TCKNAPIVKAMKQQSKDVTNEFNLRLTRIITQFKEQGLNTELYYKNKEMGETFSIVPTSA 855
Query: 987 ISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1046
SGEGIPDLLLLLVQW QKTM EKLT+ ++++CTVLEVKVIEGHGTTIDVVLVNG LHEG
Sbjct: 856 KSGEGIPDLLLLLVQWAQKTMFEKLTYVDKVKCTVLEVKVIEGHGTTIDVVLVNGELHEG 915
Query: 1047 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGT 1106
DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT
Sbjct: 916 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGT 975
Query: 1107 GLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKI 1166
L+VVGPDDD+E +KE AMEDM+SV+SRID SGEGV VQASTLGSLEALLEFLKS AV I
Sbjct: 976 SLHVVGPDDDIEAIKESAMEDMESVLSRIDNSGEGVYVQASTLGSLEALLEFLKSPAVNI 1035
Query: 1167 PVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIY 1226
PVSGI IGPVHKKD+M+A VMLEKKKEYATILAFDVKVT EARELA+E+GVKIF ADIIY
Sbjct: 1036 PVSGIGIGPVHKKDIMKAGVMLEKKKEYATILAFDVKVTTEARELADEMGVKIFCADIIY 1095
Query: 1227 HLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGT 1286
LFDQF AYI N+KEEK +E+A EAVFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GT
Sbjct: 1096 RLFDQFKAYIENIKEEKMKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGT 1155
Query: 1287 PICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
PIC+P R+FIDIGRIASIENNHKPVD A+KG++ AIK+
Sbjct: 1156 PICVPGREFIDIGRIASIENNHKPVDYAEKGEEVAIKI 1193
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574361|ref|XP_002528094.1| translation initiation factor if-2, putative [Ricinus communis] gi|223532483|gb|EEF34273.1| translation initiation factor if-2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1363 (60%), Positives = 943/1363 (69%), Gaps = 199/1363 (14%)
Query: 1 MGRKKPSVRDEANLPAVAQGGGKSKKKAVVIDDDEYSIGTELTEEPQEEEAVNNNKKKKG 60
MGRKKP+ DE P G K K+ A IDDDEY+I T L+EE ++ V+ KKKG
Sbjct: 1 MGRKKPT--DEN--PQGGGGKSKKKQLA--IDDDEYNIDTGLSEELNDK--VSLTGKKKG 52
Query: 61 KKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGNNALSKSAFELLEGADK 120
KKGNQK+LQ +++ EE + + + +VF+GKKKSKGKKNG + S S F LL D
Sbjct: 53 KKGNQKSLQPDEEKEDVEE--DGEIQDLVFSGKKKSKGKKNGTASVFSASQFGLLRDEDN 110
Query: 121 DDD-----DDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESE 175
D++ D GDK S+ + + S K+ KK SGSLF+AAAFDA+D +E E
Sbjct: 111 DNNDDEETSDLLGDKNSEVEDEPVVSFTGKKKASKKPNKTSGSLFSAAAFDALDDDNEGE 170
Query: 176 VIDDDHSVEESDDDDDDVVEKSKKGGKKKS----GTTGFSASAFDLLDDEDEDVREDKDE 231
ID S E +DD D V+E + K K G++ F+A+ LDD
Sbjct: 171 EID--KSEEGNDDYDMPVIEFTGKKKSSKGAKKVGSSVFTAATLHGLDD----------- 217
Query: 232 EDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRM 291
N++V D+DEDD ITF+ KKK S K G
Sbjct: 218 ------------------------------NEEVNGDEDEDDGAITFSGKKKSSKKAGNK 247
Query: 292 RSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVED 351
SSA LLE E+++ E + +D + + +F+ +++ +
Sbjct: 248 FSSA--LLEEENDE--------EASATVKISDDIAEAEDDDGAAITFTG---KKKSSKKK 294
Query: 352 APVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQE 411
V DV+ +QQ+G ++E+ D KGE V +TSKNKKKKK K S RTAQE
Sbjct: 295 GKVNDDVA-----EQQTG---VLEAKD----KGEEVVETSKNKKKKKNK----SGRTAQE 338
Query: 412 EDDLEKILAELGQG--------PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK 463
E+DL+KILAELG+G PQEE QV E V P +A+ EK GEEEKEESAA+K
Sbjct: 339 EEDLDKILAELGEGLPTEKPSASTPQEESNQVHL-EQVPPENASGEKEGEEEKEESAAAK 397
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET--------KKNDGKSKGPEKKMSKQVR 515
KKKKKKEKEKEKKAAA AAA QGK E VE KK+D K K +KK+ K VR
Sbjct: 398 KKKKKKEKEKEKKAAAVAAAAAASQGKEEIVEQAKAETKEPKKSDAKGKAADKKVPKHVR 457
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
EMQEALARRKE EERK REEEE+ RKEEEER+R EELERQAEEA+RRKKE+EKEKLLKKK
Sbjct: 458 EMQEALARRKELEERKAREEEEKRRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKK 517
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAK-GIPLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
QEGKLLTGKQKEE RRLEAMRNQ LA GI +P DKE A TK+ H +
Sbjct: 518 QEGKLLTGKQKEEQRRLEAMRNQILANAGITIPAADKEGAP------TKRPKYHTK---- 567
Query: 635 VPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
+SK V K+EE + +E
Sbjct: 568 --------KSKPAANHHANDAAPV------KLEENNGMEEDED----------------- 596
Query: 695 DDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKA 754
DEEWDAKSWDDVNLNVKGAFDDEE DSEP+ KKE+K+A P+ R+A + P
Sbjct: 597 --DEEWDAKSWDDVNLNVKGAFDDEEIDSEPK---KKEVKNAAPASRNAGQTP------- 644
Query: 755 IPEQPLKSQDAVTRKKEP-------------AAKSKEPEVDATPKQAEENLRSPICCIMG 801
IP Q +KSQDA +K P AAK+K P DATPK++EENLRSPICCIMG
Sbjct: 645 IPSQSVKSQDAAIKKPHPEVDDSGKNRTKDAAAKNKTPPSDATPKESEENLRSPICCIMG 704
Query: 802 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861
HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLV
Sbjct: 705 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLV 764
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNK+DR
Sbjct: 765 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKMDR 824
Query: 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI 981
LYGWK CRNAPIVKA+KQQ+ DVQNEFN RL + M+ EL+
Sbjct: 825 LYGWKVCRNAPIVKAMKQQSKDVQNEFNRRLTGV--------MHIELFLN---------- 866
Query: 982 VPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041
GEGIPDLLLLLVQWTQKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG
Sbjct: 867 ------GGEGIPDLLLLLVQWTQKTMVEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNG 920
Query: 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH 1101
VLHEGDQIVVCG QGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKI+AQGLEH
Sbjct: 921 VLHEGDQIVVCGFQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKISAQGLEH 980
Query: 1102 AIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS 1161
A+AGTGLYVVGPDD+LED+KE AMED++SVM+RI+K EGV VQASTLGSLEALLEFLKS
Sbjct: 981 ALAGTGLYVVGPDDNLEDIKEAAMEDVRSVMNRIEKRDEGVYVQASTLGSLEALLEFLKS 1040
Query: 1162 DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFI 1221
AV IPVSGI IGPVHKKDVM+ASVMLEKKKEYATILAFDVKV+ E RELA++LGVKIF+
Sbjct: 1041 PAVGIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVSQETRELADDLGVKIFM 1100
Query: 1222 ADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGI 1281
ADIIYHLFDQF AYI+NLKEEKK+EAADEAVFPCVLKILPNC+FNKKDPIVLGV+V +GI
Sbjct: 1101 ADIIYHLFDQFKAYIDNLKEEKKKEAADEAVFPCVLKILPNCIFNKKDPIVLGVEVTDGI 1160
Query: 1282 AKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
KVGTPIC+P +DFIDIGR+ASIENN+K VD AKKGQ AIK+
Sbjct: 1161 VKVGTPICVPDKDFIDIGRVASIENNYKAVDYAKKGQSVAIKL 1203
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6143896|gb|AAF04442.1|AC010718_11 putative translation initiation factor IF-2; 73082-68138 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1098 (65%), Positives = 845/1098 (76%), Gaps = 53/1098 (4%)
Query: 270 DEDDEP-ITFTDKKKKSNKG----GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT-D 323
D+DDEP I+FT KK S KG +SAFD L ++D+D +E + +EE+ PI F+
Sbjct: 134 DKDDEPVISFTGKKHASKKGKKGGNSFAASAFDALGSDDDDTEEVHEDEEEESPITFSGK 193
Query: 324 KKKKTKSSKKTVSSFSEVLLDEE------------NVVED--APVLS-------DVSGAV 362
KKK +KSSKK +SF+ LLDEE N +ED +P ++
Sbjct: 194 KKKSSKSSKKNTNSFTADLLDEEEGTDASNSRDDENTIEDEESPEVTFSGKKKSSKKKGG 253
Query: 363 DTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAEL 422
GD S+ + K V +T K+KKKKK + S RT QEE+DL+K+LA L
Sbjct: 254 SVLASVGDDSVADETKTSDTKNVEVVETGKSKKKKKNNK---SGRTVQEEEDLDKLLAAL 310
Query: 423 GQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
G+ PA P EEK PEPVAP + A EK GEEE + KKKK+K++++K
Sbjct: 311 GETPAAERPASSTPVEEKAA--QPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKKA 368
Query: 475 KKAAAAAAAEDKQQGK-----SEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
AAAA ++ + ++ K +E ++ KK D K K EKK+ K VREMQEALARR+EAEE
Sbjct: 369 AAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEE 428
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEKLL+KK EGKLLT KQK EA
Sbjct: 429 RKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAKQKTEA 488
Query: 590 RRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKE 646
++ EA +NQ LA G LP D + +SKRP Y KKKS+ + ED +E KE
Sbjct: 489 QKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDTSVQGEDEVEPKE 548
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
+ ++Q+TL EV + +T KV+ E + +E AD +EN VEE+D++ +EWDAKSW
Sbjct: 549 NQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDEE--DEWDAKSWG 606
Query: 707 DVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDAV 766
V+LN+KG FDDEE E +P+VKKE+K AI D+ KP +A KA PE ++
Sbjct: 607 TVDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSG-KPLIAAVKATPEVEDATRTKR 663
Query: 767 TRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG 826
+ + A+K + + + EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG
Sbjct: 664 ATRAKDASKKGKGLAPSESIEGEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG 723
Query: 827 ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAIL 886
ITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGS LCD+AIL
Sbjct: 724 ITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAIL 783
Query: 887 VVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946
VVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWKTC+NAPIVKA+KQQN DV N
Sbjct: 784 VVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTCKNAPIVKAMKQQNKDVIN 843
Query: 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006
EFN+RL I+ + +EQG+NTELYYKNKD G+TF+IVPTSAISGEG+PDLLL LVQW QKT
Sbjct: 844 EFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSIVPTSAISGEGVPDLLLWLVQWAQKT 903
Query: 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066
MVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIVVCGLQGPIVTTIRALL
Sbjct: 904 MVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALL 963
Query: 1067 TPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAME 1126
TPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEHAIAGT L+VVGPDDD+E +KE AME
Sbjct: 964 TPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEHAIAGTALHVVGPDDDIEAIKESAME 1023
Query: 1127 DMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASV 1186
DM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS AVKIPVSGI IGPVHKKDVM+A V
Sbjct: 1024 DMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKSPAVKIPVSGIGIGPVHKKDVMKAGV 1083
Query: 1187 MLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE 1246
MLE+KKEYATILAFDVKVT EARELA+E+GVKIF ADIIYHLFD F AYI N+KEEKK+E
Sbjct: 1084 MLERKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYHLFDLFKAYIENIKEEKKKE 1143
Query: 1247 AADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIEN 1306
+ADEAVFPCVL+ILPNCVFNKKDPIVLGVDV+EGI K+GTPIC+P R+FIDIGRIASIEN
Sbjct: 1144 SADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGILKIGTPICVPGREFIDIGRIASIEN 1203
Query: 1307 NHKPVDTAKKGQKAAIKV 1324
NHKPVD AKKG K AIK+
Sbjct: 1204 NHKPVDYAKKGNKVAIKI 1221
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563275|ref|NP_177807.3| translation initiation factor eIF-5B [Arabidopsis thaliana] gi|332197770|gb|AEE35891.1| translation initiation factor eIF-5B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1111 (64%), Positives = 847/1111 (76%), Gaps = 65/1111 (5%)
Query: 270 DEDDEP-ITFTDKKKKSNKG----GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT-D 323
D+DDEP I+FT KK S KG +SAFD L ++D+D +E + +EE+ PI F+
Sbjct: 134 DKDDEPVISFTGKKHASKKGKKGGNSFAASAFDALGSDDDDTEEVHEDEEEESPITFSGK 193
Query: 324 KKKKTKSSKKTVSSFSEVLLDEE------------NVVED--APVLS-------DVSGAV 362
KKK +KSSKK +SF+ LLDEE N +ED +P ++
Sbjct: 194 KKKSSKSSKKNTNSFTADLLDEEEGTDASNSRDDENTIEDEESPEVTFSGKKKSSKKKGG 253
Query: 363 DTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAEL 422
GD S+ + K V +T K+KKKKK + S RT QEE+DL+K+LA L
Sbjct: 254 SVLASVGDDSVADETKTSDTKNVEVVETGKSKKKKKNNK---SGRTVQEEEDLDKLLAAL 310
Query: 423 GQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
G+ PA P EEK PEPVAP + A EK GEEE + KKKK+K++++K
Sbjct: 311 GETPAAERPASSTPVEEKAA--QPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKKA 368
Query: 475 KKAAAAAAAEDKQQGK-----SEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
AAAA ++ + ++ K +E ++ KK D K K EKK+ K VREMQEALARR+EAEE
Sbjct: 369 AAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEE 428
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEKLL+KK EGKLLT KQK EA
Sbjct: 429 RKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAKQKTEA 488
Query: 590 RRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKE 646
++ EA +NQ LA G LP D + +SKRP Y KKKS+ + ED +E KE
Sbjct: 489 QKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDTSVQGEDEVEPKE 548
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
+ ++Q+TL EV + +T KV+ E + +E AD +EN VEE+D++ +EWDAKSW
Sbjct: 549 NQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDEE--DEWDAKSWG 606
Query: 707 DVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDA---AEKPA----------VAVKK 753
V+LN+KG FDDEE E +P+VKKE+K AI D+ AEKP +A K
Sbjct: 607 TVDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVK 664
Query: 754 AIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
A PE ++ + + A+K + + + EENLRSPICCIMGHVDTGKTKLLDC
Sbjct: 665 ATPEVEDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSPICCIMGHVDTGKTKLLDC 724
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNL
Sbjct: 725 IRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNL 784
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDRLYGWKTC+NAPI
Sbjct: 785 RSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTCKNAPI 844
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
VKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD G+TF+IVPTSAISGEG+P
Sbjct: 845 VKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSIVPTSAISGEGVP 904
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
DLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIVVCG
Sbjct: 905 DLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIVVCG 964
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
LQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEHAIAGT L+VVGP
Sbjct: 965 LQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEHAIAGTALHVVGP 1024
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
DDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS AVKIPVSGI I
Sbjct: 1025 DDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKSPAVKIPVSGIGI 1084
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+GVKIF ADIIYHLFD F
Sbjct: 1085 GPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYHLFDLFK 1144
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AYI N+KEEKK+E+ADEAVFPCVL+ILPNCVFNKKDPIVLGVDV+EGI K+GTPIC+P R
Sbjct: 1145 AYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGILKIGTPICVPGR 1204
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+FIDIGRIASIENNHKPVD AKKG K AIK+
Sbjct: 1205 EFIDIGRIASIENNHKPVDYAKKGNKVAIKI 1235
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|23452071|gb|AAN32916.1| translation initiation factor [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/751 (75%), Positives = 637/751 (84%), Gaps = 15/751 (1%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGA 634
GKLLTGKQKEEARRLEAMR Q L G+ LP GD A +K+P YQTKK KS NGA
Sbjct: 62 GKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDTGAPAKKPIYQTKKGKSTSRNYNGA 121
Query: 635 VPLKED-SIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEED 693
+K D SIE+KE T ++D E +KVEE S+ E+ E+ +A E+ VEE+D
Sbjct: 122 ASVKADESIEAKE-------TTADLDSEEPKKVEEVVSVQKEDIIELPEAVVEDRVEEDD 174
Query: 694 DDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKK 753
+D+ + A+SWDDVNLN KGAF DEE DSEPE +VKKEIK+ IP+ A V+ K
Sbjct: 175 VEDEWD--ARSWDDVNLNDKGAFADEEVDSEPELIVKKEIKTGIPAKNAGATSKTVS--K 230
Query: 754 AIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813
+ E+ + A + K + + A K ++ NLRSPICCIMGHVDTGKTKLLDC
Sbjct: 231 HVAEEIEDRKQAKIGVEAKKKKQDQQQSAAFSKPSDANLRSPICCIMGHVDTGKTKLLDC 290
Query: 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873
IRGTNVQEGEAGGITQQIGATYFPAENIR+RT+ELKA+ATLKVPGLLVIDTPGHESF NL
Sbjct: 291 IRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFNNL 350
Query: 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933
RSRGSGLCDIAILVVDIMHGLEPQT ESL+LLKMRNTEFIVALNKVDRLYGWKTCRNAPI
Sbjct: 351 RSRGSGLCDIAILVVDIMHGLEPQTKESLDLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 410
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
KA+ QQ+ DVQNEFNMRL QIVT+ KEQG+NT LYYKNK+ GETF+IVPTSAISGEGIP
Sbjct: 411 RKAMLQQSKDVQNEFNMRLDQIVTEFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIP 470
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053
D+LLLLVQWTQKTM+EKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV G
Sbjct: 471 DMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVAG 530
Query: 1054 LQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGP 1113
+QGPIVT+IRALLTPHPMKELRVKG+Y+HHK+IKAA GIKITAQGLEHAIAG LYVV P
Sbjct: 531 MQGPIVTSIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKP 590
Query: 1114 DDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISI 1173
DDDLE +K A+ED++SV+SRID+SGEGVCVQASTLGSLEALLEFLK+ AV IPVS ISI
Sbjct: 591 DDDLEHIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPAVNIPVSAISI 650
Query: 1174 GPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFT 1233
GPVHKKDVM+ASVMLEKK+EY+TILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF
Sbjct: 651 GPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFK 710
Query: 1234 AYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQR 1293
AY+ N+K+EKK+E+ADEAVFPCVLKILPNCVFNKKDPIVLGVD++EGI K+GTPICIP +
Sbjct: 711 AYMENIKDEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQ 770
Query: 1294 DFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
DFIDIGRIASIENNHKPVD AKKGQK AIK+
Sbjct: 771 DFIDIGRIASIENNHKPVDYAKKGQKVAIKI 801
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | ||||||
| TAIR|locus:2030116 | 1294 | AT1G76810 [Arabidopsis thalian | 0.561 | 0.574 | 0.686 | 9.2e-291 | |
| TAIR|locus:2030126 | 1166 | AT1G76820 [Arabidopsis thalian | 0.555 | 0.630 | 0.663 | 1.2e-271 | |
| TAIR|locus:2030041 | 1191 | AT1G76720 "AT1G76720" [Arabido | 0.545 | 0.606 | 0.646 | 2e-260 | |
| TAIR|locus:2199562 | 1092 | AT1G21160 "AT1G21160" [Arabido | 0.555 | 0.673 | 0.585 | 8.6e-236 | |
| POMBASE|SPAC56F8.03 | 1079 | SPAC56F8.03 "translation initi | 0.420 | 0.516 | 0.587 | 3e-185 | |
| ASPGD|ASPL0000017318 | 1072 | AN4038 [Emericella nidulans (t | 0.407 | 0.502 | 0.594 | 1.5e-177 | |
| TAIR|locus:2042097 | 480 | AT2G27700 [Arabidopsis thalian | 0.337 | 0.931 | 0.748 | 5.1e-177 | |
| FB|FBgn0026259 | 1144 | eIF5B "eIF5B" [Drosophila mela | 0.408 | 0.472 | 0.561 | 8.3e-177 | |
| UNIPROTKB|F1N6Y7 | 1220 | EIF5B "Uncharacterized protein | 0.402 | 0.436 | 0.543 | 3e-171 | |
| UNIPROTKB|J9P504 | 1219 | EIF5B "Uncharacterized protein | 0.402 | 0.437 | 0.543 | 1e-170 |
| TAIR|locus:2030116 AT1G76810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2541 (899.5 bits), Expect = 9.2e-291, Sum P(5) = 9.2e-291
Identities = 524/763 (68%), Positives = 583/763 (76%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D + +SKRP Y KKKS+ +
Sbjct: 477 GKLLTAKQKTEAQKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDT 536
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
TL EV + +T KV+ E + +E A
Sbjct: 537 SVQGEDEVEPKENQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEEDDE 596
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXX- 753
V+LN+KG FDDEE E +P+VKKE+K AI D
Sbjct: 597 EDEWDAKSWGT--VDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSEPEAEKPTAKP 652
Query: 754 XXXXQPL----KS----QDAV-TRXXXXXXXXXXXXVDATPKQA---EENLRSPICCIMG 801
+PL K+ +DA T+ P ++ EENLRSPICCIMG
Sbjct: 653 AGTGKPLIAAVKATPEVEDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSPICCIMG 712
Query: 802 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861
HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLV
Sbjct: 713 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLV 772
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
IDTPGHESFTNLRSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDR
Sbjct: 773 IDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDR 832
Query: 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI 981
LYGWKTC+NAPIVKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD G+TF+I
Sbjct: 833 LYGWKTCKNAPIVKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSI 892
Query: 982 VPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041
VPTSAISGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG
Sbjct: 893 VPTSAISGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNG 952
Query: 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH 1101
LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEH
Sbjct: 953 ELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEH 1012
Query: 1102 AIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS 1161
AIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS
Sbjct: 1013 AIAGTALHVVGPDDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKS 1072
Query: 1162 DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFI 1221
AVKIPVSGI IGPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+GVKIF
Sbjct: 1073 PAVKIPVSGIGIGPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEMGVKIFC 1132
Query: 1222 ADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGI 1281
ADIIYHLFD F AYI N+ VFPCVL+ILPNCVFNKKDPIVLGVDV+EGI
Sbjct: 1133 ADIIYHLFDLFKAYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGI 1192
Query: 1282 AKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
K+GTPIC+P R+FIDIGRIASIENNHKPVD AKKG K AIK+
Sbjct: 1193 LKIGTPICVPGREFIDIGRIASIENNHKPVDYAKKGNKVAIKI 1235
|
|
| TAIR|locus:2030126 AT1G76820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2435 (862.2 bits), Expect = 1.2e-271, Sum P(4) = 1.2e-271
Identities = 500/754 (66%), Positives = 567/754 (75%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKE---AASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D + +SKRP Y KKKS+ + N
Sbjct: 366 GKLLTAKQKSEAQKREAFKNQLLAAGGGLPVADDDDDATSSKRPIYANKKKSSRQKGNDT 425
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
L EV +TEKV+ ES + EK
Sbjct: 426 -----SVQVEGEVEPKENHALGEVGSADTEKVDLLESANLGEK----SGGPADVAQENGV 476
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXXX 754
V+L ++G FDD+E E + +VKKE K+
Sbjct: 477 EEDDEWDAKSWDNVDLKIRGDFDDKE--EEAQHVVKKEFKAHYSDHETEKPTAKPAGMSK 534
Query: 755 XXXQPLKS----QDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
+K+ +DA T+ + ++ E LRS ICCIMGHVD+GKTKL
Sbjct: 535 LETAAVKAISEVEDAATQTKRAKKGKCLAPNEFI-EEGGEKLRSIICCIMGHVDSGKTKL 593
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870
LDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERTRELKA+A LKVPGLLVIDTPGHESF
Sbjct: 594 LDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERTRELKADAKLKVPGLLVIDTPGHESF 653
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRGS LCD+AILVVDI HGL+PQTIESLNLL+MRNTEFI+ALNKVDRLYGWKTC+N
Sbjct: 654 TNLRSRGSSLCDLAILVVDITHGLQPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTCKN 713
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
APIVKA+KQQN DV NEFN+RL +I+ + +EQG+NTELYYKNKD GETF+IVPTSAISGE
Sbjct: 714 APIVKAMKQQNKDVINEFNLRLKKIINEFQEQGLNTELYYKNKDMGETFSIVPTSAISGE 773
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIV
Sbjct: 774 GVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIV 833
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT L+V
Sbjct: 834 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGTSLHV 893
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSG 1170
VGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ STLGSLEALLEFLK+ AV IPVSG
Sbjct: 894 VGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQTSTLGSLEALLEFLKTPAVNIPVSG 953
Query: 1171 ISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFD 1230
I IGPVHKKD+M+A VMLEKKKEYATILAFDVKVT EARELA+E+GVKIF ADIIY LF+
Sbjct: 954 IGIGPVHKKDIMKAGVMLEKKKEYATILAFDVKVTTEARELADEMGVKIFCADIIYQLFN 1013
Query: 1231 QFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI 1290
QF YI N+ VFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GTPIC+
Sbjct: 1014 QFQVYIENIKEEKKKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGTPICV 1073
Query: 1291 PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
P R+F DIGRIASIENNHKPVD A+KG + AIK+
Sbjct: 1074 PGREFTDIGRIASIENNHKPVDYAEKGDEVAIKI 1107
|
|
| TAIR|locus:2030041 AT1G76720 "AT1G76720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2307 (817.2 bits), Expect = 2.0e-260, Sum P(5) = 2.0e-260
Identities = 488/755 (64%), Positives = 552/755 (73%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDK---EAASKRPKYQTKKKSAHHQANGA 634
GKLLT KQK EA++ EA +NQ LA G LP D +SKRP Y KKK + + N
Sbjct: 420 GKLLTAKQKTEAQKREAFKNQLLAAGRGLPVADDVGDATSSKRPIYANKKKPSRQKGNDT 479
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
TL EV +TEKV+ ES EK A
Sbjct: 480 ---SVQVEDEVEPQENHAATLGEVGSEDTEKVDLLESANTGEKSGPADVAQENGVEEDDE 536
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDXXXXXXXXXXXX 754
N+++K DD+E E +P+VKKE+K+
Sbjct: 537 WDAKSWD-------NVDLK--IDDKE--EEAQPVVKKELKAHDSDHETEKPTAKPAGMSK 585
Query: 755 XXXQPLKS----QDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
+K+ +DA T+ + K+ ENLRS ICCIMGHVD+GKTKL
Sbjct: 586 LTTGAVKAISEVEDAATQTKRAKKGKCLAPSEFI-KEGGENLRSIICCIMGHVDSGKTKL 644
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870
LDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERTRELKA+A LKVPGLLVIDTPGHESF
Sbjct: 645 LDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERTRELKADAKLKVPGLLVIDTPGHESF 704
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRGS LCD+AILVVDI HGLEPQTIESLNLL+MRNTEFI+ALNKVDRLYGWKTC+N
Sbjct: 705 TNLRSRGSSLCDLAILVVDIKHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTCKN 764
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
APIVKA+KQQN DV NEFN+RL I+TQ KEQG+NTE+YYKNK+ GETF+IVPTSA SGE
Sbjct: 765 APIVKAMKQQNKDVTNEFNIRLTDIITQFKEQGLNTEIYYKNKEMGETFSIVPTSAKSGE 824
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG LHEGDQIV
Sbjct: 825 GVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIV 884
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQGIKITAQGLEHAIAGT L+V
Sbjct: 885 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGTSLHV 944
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVS- 1169
VGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ STLGSLEALLEFLK+ AV IPVS
Sbjct: 945 VGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQTSTLGSLEALLEFLKTPAVNIPVSE 1004
Query: 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLF 1229
G + G D ++KEYATILAFDVKVT EARELA+E+GVKIF ADIIY LF
Sbjct: 1005 GYNEG---WSDA-------REEKEYATILAFDVKVTTEARELADEMGVKIFCADIIYQLF 1054
Query: 1230 DQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC 1289
+QF YI N+ VFPCVL+ILPNCVFNK+DPI+LGV V +GI K+GTPIC
Sbjct: 1055 NQFQVYIENIKEEKKKESAGEAVFPCVLQILPNCVFNKRDPIILGVKVHDGILKIGTPIC 1114
Query: 1290 IPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+P R+F DIGRIASIENNHKPVD A+KG + AIK+
Sbjct: 1115 VPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKI 1149
|
|
| TAIR|locus:2199562 AT1G21160 "AT1G21160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2142 (759.1 bits), Expect = 8.6e-236, Sum P(5) = 8.6e-236
Identities = 447/764 (58%), Positives = 542/764 (70%)
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA-ASKRPKYQTKKKSAHHQAN--GA 634
G +LT KQK +A + EA R + L L DK +SKRP Y K K A +AN +
Sbjct: 282 GLILTAKQKRDAAKNEAFRKRVLTDAGSLLVADKNGDSSKRPIYGNKNKLACKKANDPAS 341
Query: 635 VPLXXXXXXXXXXXXXXXXTLLEVDVGETEKVEEGESLTVEEKPEIAXXXXXXXXXXXXX 694
V TL ++ E +V ES+ EE E
Sbjct: 342 VQAKGDGETKENHAADEPCTLPDLVSVEDRRVGIIESVDTEETHE----------SVDVS 391
Query: 695 XXXXXXXXXXXXXVNLNVKGAFDDEEADSEPEPLVKKEIKS-------AIP-SPRDXXXX 746
N +KG DDEE +P+P+ KK +K ++P + R
Sbjct: 392 QENGDEEDVWDAKTNFTIKGDSDDEE--EKPQPVFKKGLKDTASKAHDSVPGADRPTVKP 449
Query: 747 XXXXXXXXXXXQPLKSQDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTG 806
+ + D TR ++ K+ EENLRSPICCIMGHVD+G
Sbjct: 450 GGSGKPKTAAKKAMPKVDDTTRPKDTSKKDEGLVLNELAKEVEENLRSPICCIMGHVDSG 509
Query: 807 KTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866
KTKLLDCIRGTNVQEGEAGGITQQIGAT+FPAENIRERT+EL+ANA LKVPG+LVIDTPG
Sbjct: 510 KTKLLDCIRGTNVQEGEAGGITQQIGATFFPAENIRERTKELQANAKLKVPGILVIDTPG 569
Query: 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926
HESFTNLRSRGS LCD+AILVVDIM GLEPQTIESLNLL+ RN +FI+ALNKVDRLYGW+
Sbjct: 570 HESFTNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRNVKFIIALNKVDRLYGWE 629
Query: 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSA 986
+NAPI K + QQ DV EF MRL ++ Q +EQG+N+ LYYKN++ GET +I+P SA
Sbjct: 630 KSKNAPIRKTMMQQTGDVVKEFKMRLNRVQNQFQEQGLNSMLYYKNREMGETISILPASA 689
Query: 987 ISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1046
ISGEGIPDLLL LVQW QKTMVEKLT+ +++QCTVLEVKVIEGHG T+DVVLVNGVL EG
Sbjct: 690 ISGEGIPDLLLFLVQWAQKTMVEKLTYVDKVQCTVLEVKVIEGHGITVDVVLVNGVLREG 749
Query: 1047 DQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGT 1106
DQIVVCG QGPIVTTIR+LLTP+PM E+RV GTY+ H+++KAAQGIKI AQGLEHAIAGT
Sbjct: 750 DQIVVCGSQGPIVTTIRSLLTPYPMNEMRVTGTYMPHREVKAAQGIKIAAQGLEHAIAGT 809
Query: 1107 GLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKI 1166
L+V+GP++D+E+ K+ AMED++SVM+RIDKSGEGV VQASTLGSLEALLEFLKS VKI
Sbjct: 810 ALHVIGPNEDMEEAKKNAMEDIESVMNRIDKSGEGVYVQASTLGSLEALLEFLKSSDVKI 869
Query: 1167 PVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIY 1226
PVSGI IGPVHKKD+M+A VMLEKKKE+ATILAFDVK++ EARELA+++GVKIF D IY
Sbjct: 870 PVSGIGIGPVHKKDIMKAGVMLEKKKEFATILAFDVKISAEARELADKMGVKIFCDDTIY 929
Query: 1227 HLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGT 1286
LFD+F +YI + VFPC+L+ILPN ++N++DPI+LGV V +GI KVGT
Sbjct: 930 CLFDKFKSYIEGIKEEKKKETACEAVFPCILQILPNHIYNQRDPIILGVKVNDGILKVGT 989
Query: 1287 PICIPQRD-----FIDIGRIASIENNHK-PVDTAKKGQKAAIKV 1324
PICI +R F+DIGR++SI+NN+ PVD A+KGQ+ AIK+
Sbjct: 990 PICIVKRIENVRVFMDIGRVSSIKNNNNMPVDYARKGQEVAIKI 1033
|
|
| POMBASE|SPAC56F8.03 SPAC56F8.03 "translation initiation factor IF2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1705 (605.2 bits), Expect = 3.0e-185, Sum P(4) = 3.0e-185
Identities = 339/577 (58%), Positives = 429/577 (74%)
Query: 760 LKSQDAVTRXXXXXXXXXXXXVDATPKQA-------EENLRSPICCIMGHVDTGKTKLLD 812
+KS DAV VD P+ A E +LRSPICCI+GHVDTGKTKLLD
Sbjct: 444 IKS-DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVDTGKTKLLD 502
Query: 813 CIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK--VPGLLVIDTPGHESF 870
+R +NVQEGEAGGITQQIGATYFP E+I+++T+ + L+ +PGLL+IDTPGHESF
Sbjct: 503 NLRRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESF 562
Query: 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930
TNLRSRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T F+VALNKVDRLYGW + ++
Sbjct: 563 TNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRLYGWHSIKD 622
Query: 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE 990
I ++ +Q +Q EF R+ I+ QL EQG+N LY++NK+ G ++VPTSA SGE
Sbjct: 623 NAIQDSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFENKNLGRYVSLVPTSAQSGE 682
Query: 991 GIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIV 1050
G+PDL+ LL+ TQ M +++ + L+CTVLEVKVIEG G TIDV+L NGVLHEGD+IV
Sbjct: 683 GVPDLVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLGATIDVILSNGVLHEGDRIV 742
Query: 1051 VCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
+CG+ GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G+KI A LE A+AG+ L V
Sbjct: 743 LCGMGGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLV 802
Query: 1111 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSG 1170
VGPDDD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK +KIPV+
Sbjct: 803 VGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVAS 860
Query: 1171 ISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFD 1230
++IGPV+KKDVMR + MLEK KEYA +L FDVKV +A +LAE+LGVKIF A++IYHLFD
Sbjct: 861 VNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFD 920
Query: 1231 QFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC- 1289
FTA+ + VFPCVLK + FNK+DPI+LGVDVVEG+ ++ TPI
Sbjct: 921 AFTAHQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGVDVVEGVLRINTPIVA 978
Query: 1290 ---IPQRD--FIDIGRIASIENNHKPVDTAKKGQKAA 1321
+P + I++GR+AS+E NHKPVD KKGQ A
Sbjct: 979 VKQLPNGEPQIIELGRVASLEMNHKPVDKVKKGQAGA 1015
|
|
| ASPGD|ASPL0000017318 AN4038 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 329/553 (59%), Positives = 415/553 (75%)
Query: 782 DATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI 841
+A ++++NLRSPICCI+GHVDTGKTKLLD IR TNVQEGEAGGITQQIGATYFP + +
Sbjct: 468 EALAARSKDNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVDAL 527
Query: 842 RERTRELKANATL--KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
R++T + + + K+PGLLVIDTPGHESF+NLRSRGS LC+IAILVVDIMHGLEPQT+
Sbjct: 528 RQKTAVVNKDGSFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTL 587
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL 959
ES+ LL+ R T FIVALNK+DRLYGWK N +++ Q+ VQNEF RL +
Sbjct: 588 ESMRLLRERRTPFIVALNKIDRLYGWKKIDNNGFQESLAMQSKGVQNEFRTRLERTKLLF 647
Query: 960 KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1019
EQG N+EL+Y+NK ++VPTSA +GEG+PD+L LL TQ+ M L + +E++C
Sbjct: 648 AEQGFNSELFYENKSMARNVSLVPTSAHTGEGVPDMLKLLTTLTQERMTNSLMYLSEVEC 707
Query: 1020 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079
TVLEVKVIEG GTTIDVVL NG+L EGD+IV+CGL GPI T IRALLTP P+KELR+K
Sbjct: 708 TVLEVKVIEGLGTTIDVVLSNGILREGDRIVLCGLNGPIATNIRALLTPAPLKELRLKSQ 767
Query: 1080 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSG 1139
Y+H+K++KAA G+KI A LEHAIAG+ L VVGPDDD ED++EE M D+++++S++ K
Sbjct: 768 YVHNKEVKAALGVKIAANDLEHAIAGSRLMVVGPDDDEEDIEEEVMSDLENLLSKVSKDQ 827
Query: 1140 EGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILA 1199
GV VQASTLGSLEALLEFL+ KIPV+ ISIGPV+K+DVM MLEK KEYA +L
Sbjct: 828 RGVSVQASTLGSLEALLEFLRVS--KIPVANISIGPVYKRDVMMCGTMLEKAKEYAVMLC 885
Query: 1200 FDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 1259
FDVKV EA+ A+++GVKIF ADIIYHLFD FT ++ L VFPCVLK
Sbjct: 886 FDVKVDKEAQAYADDVGVKIFTADIIYHLFDDFTKHMAELTERKKEEAKLLAVFPCVLKT 945
Query: 1260 LPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQ-------RDFIDIGRIASIENNHKPVD 1312
+ VFNKKDPIV+GVDVVEG ++ TPI + ++ +++GR+A IE +HKPV+
Sbjct: 946 V--AVFNKKDPIVIGVDVVEGSLRLHTPIAAIKTNATTGAKEVVELGRVAGIERDHKPVN 1003
Query: 1313 TAKKGQKA-AIKV 1324
K+GQ + A+K+
Sbjct: 1004 VVKRGQPSVAVKI 1016
|
|
| TAIR|locus:2042097 AT2G27700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1719 (610.2 bits), Expect = 5.1e-177, P = 5.1e-177
Identities = 337/450 (74%), Positives = 389/450 (86%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 848
E+ +RSPICC+MGH+DTGKTKLLD I G NVQEGEAGG TQ++GATY A NI E+T EL
Sbjct: 31 EDKVRSPICCMMGHIDTGKTKLLDYITG-NVQEGEAGGTTQKMGATYLSARNILEKTMEL 89
Query: 849 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
K++ LKVP L IDTPG+E +TNLRSRG GLCD AILVVDIMHGLEPQTIE LNLL+M+
Sbjct: 90 KSDTKLKVPRPLFIDTPGYEFYTNLRSRGLGLCDFAILVVDIMHGLEPQTIECLNLLRMK 149
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
NTEFI+ALNKVDRLYGW+ C NAPI++A+KQQ DV NEFNMRL +I+ Q KEQG+N+EL
Sbjct: 150 NTEFIIALNKVDRLYGWRICENAPILEAMKQQTKDVINEFNMRLNEIINQFKEQGLNSEL 209
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL-TFRNELQ-CTVLEVKV 1026
YYKNK+ GETF+IVPT AISGEGIPDLLLLLVQ TQKTMVEKL T+ +++Q CTVLEVKV
Sbjct: 210 YYKNKEMGETFSIVPTCAISGEGIPDLLLLLVQLTQKTMVEKLITYVDKVQQCTVLEVKV 269
Query: 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086
+EG+GTTIDVVLVNG LHEG QIVVCGLQGPIVTTIRALLTPHP+KEL V G ++HH+ I
Sbjct: 270 MEGYGTTIDVVLVNGELHEGGQIVVCGLQGPIVTTIRALLTPHPIKELHVNGNHVHHEVI 329
Query: 1087 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1146
KAA+ I I A+ LEH I GT L+VVGPDDD+E +KE MED+ SV+SRIDKSGEGV +QA
Sbjct: 330 KAAECINIIAKDLEHVIVGTALHVVGPDDDIEAIKELVMEDVNSVLSRIDKSGEGVYIQA 389
Query: 1147 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
STLGSLEALLEFLKS AVK+PV GI IGPV KKDVM+A VMLE+KKE+ATILA DV+VT
Sbjct: 390 STLGSLEALLEFLKSPAVKLPVGGIGIGPVQKKDVMKAGVMLERKKEFATILALDVEVTT 449
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYI 1236
EARELA+E+ VKIF +DI+YHLFDQ+ AYI
Sbjct: 450 EARELADEMEVKIFCSDIMYHLFDQYQAYI 479
|
|
| FB|FBgn0026259 eIF5B "eIF5B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1560 (554.2 bits), Expect = 8.3e-177, Sum P(5) = 8.3e-177
Identities = 306/545 (56%), Positives = 395/545 (72%)
Query: 782 DATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI 841
+A K++ + LR+ + C++GHVDTGKTK+LD +R T+VQ+ EAGGITQQIGAT P E I
Sbjct: 543 EAEKKRSTDELRAGVVCVLGHVDTGKTKILDKLRRTHVQDSEAGGITQQIGATNVPIEAI 602
Query: 842 RERTRELKANATL--KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+E+T+ +KA A ++PGLL+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTI
Sbjct: 603 KEQTKYVKAAAGFEHRLPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 662
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL 959
ES+ LLK + FIVALNK+DRLY WK + +K+Q ++ Q EF R ++ Q
Sbjct: 663 ESIQLLKKKKCPFIVALNKIDRLYDWKQLARRDVRDVLKEQQSNTQLEFQQRTKDVILQF 722
Query: 960 KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1019
EQG+N L+Y+N D ++VPTSAISGEG+ +LL ++ + Q + ++L + ELQ
Sbjct: 723 AEQGLNAALFYENTDPKTYISLVPTSAISGEGMGNLLFMIADFCQNMLAKRLMYSEELQA 782
Query: 1020 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079
TVLEVK + G GTTID +L+NG L EG +VV G GPIVT IR+LL P PMKELRVK
Sbjct: 783 TVLEVKALPGLGTTIDAILINGKLREGQTMVVAGTDGPIVTQIRSLLMPQPMKELRVKNA 842
Query: 1080 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSG 1139
Y+ +K++KAAQG+KI A+ LE AIAG L + D++E EE ++KS +S I +
Sbjct: 843 YVEYKEVKAAQGVKIAAKDLEKAIAGINLLIAHKPDEVEICTEEVARELKSALSHIKLAQ 902
Query: 1140 EGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILA 1199
GV VQASTLGSLEALLEFL++ KIP S I IGPV K+DVM+AS MLE + +YATILA
Sbjct: 903 TGVHVQASTLGSLEALLEFLRTS--KIPYSAIRIGPVVKRDVMKASTMLEHEAQYATILA 960
Query: 1200 FDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 1259
FDVK+ EA+E+A+ LGVKIF ADIIYHLFD+FTAY L VFPC L+I
Sbjct: 961 FDVKIEREAQEMADSLGVKIFQADIIYHLFDKFTAYREELKQKKREEFRSVAVFPCKLRI 1020
Query: 1260 LPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQK 1319
LP VFN +DPIV+GV V GI KVGTPIC+P ++F+DIG + SIE+NHK ++ A+KGQ+
Sbjct: 1021 LPQFVFNSRDPIVMGVMVENGIVKVGTPICVPSKEFVDIGIVTSIESNHKQIEFARKGQE 1080
Query: 1320 AAIKV 1324
+K+
Sbjct: 1081 ICVKI 1085
|
|
| UNIPROTKB|F1N6Y7 EIF5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 3.0e-171, Sum P(5) = 3.0e-171
Identities = 292/537 (54%), Positives = 391/537 (72%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTRDEFEERAKAIIVEFAQQGLNAA 806
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLICLLVELTQTMLSKRLAQCEELRAQVMEVKAL 866
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEVPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNS 1104
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEVNHKQVDVAKKGQEVCVKI 1161
|
|
| UNIPROTKB|J9P504 EIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1514 (538.0 bits), Expect = 1.0e-170, Sum P(5) = 1.0e-170
Identities = 292/537 (54%), Positives = 391/537 (72%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 626 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 685
Query: 850 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 686 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 745
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 746 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 805
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 806 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 865
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 866 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 925
Query: 1088 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1147
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 926 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 985
Query: 1148 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1207
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 986 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1043
Query: 1208 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1267
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1044 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1103
Query: 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +K+
Sbjct: 1104 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKI 1160
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_XII0050 | hypothetical protein (1332 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XVI.1402.1 | hypothetical protein (482 aa) | • | • | • | • | 0.522 | ||||
 | gw1.VI.2308.1 | hypothetical protein (550 aa) | • | • | • | 0.484 | |||||
 | estExt_fgenesh4_pm.C_LG_VIII0372 | SubName- Full=Putative uncharacterized protein; (160 aa) | • | • | 0.479 | ||||||
 | estExt_Genewise1_v1.C_LG_X0940 | SubName- Full=Putative uncharacterized protein; (159 aa) | • | • | 0.475 | ||||||
 | estExt_Genewise1_v1.C_LG_VI0968 | SubName- Full=Putative uncharacterized protein; (160 aa) | • | 0.474 | |||||||
 | estExt_fgenesh4_pm.C_LG_XVIII0351 | SubName- Full=Putative uncharacterized protein; (160 aa) | • | 0.473 | |||||||
 | grail3.0035003102 | hypothetical protein (152 aa) | • | • | 0.446 | ||||||
 | estExt_fgenesh4_pg.C_LG_II1328 | SubName- Full=Putative uncharacterized protein; (152 aa) | • | • | 0.445 | ||||||
 | eugene3.00121232 | hypothetical protein (152 aa) | • | • | 0.439 | ||||||
 | grail3.0005049701 | SubName- Full=Putative uncharacterized protein; (152 aa) | • | • | 0.436 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1324 | |||
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 0.0 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-139 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 1e-136 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 1e-125 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 3e-81 | |
| cd03703 | 110 | cd03703, aeIF5B_II, aeIF5B_II: This family represe | 2e-53 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-43 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 3e-42 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 3e-40 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 4e-39 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-27 | |
| pfam11987 | 109 | pfam11987, IF-2, Translation-initiation factor 2 | 7e-22 | |
| cd03701 | 95 | cd03701, IF2_IF5B_II, IF2_IF5B_II: This family rep | 2e-21 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-15 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-15 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 1e-14 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 9e-14 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-12 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 4e-12 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 1e-11 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 2e-10 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 2e-10 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 3e-10 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 4e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-10 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-09 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 1e-08 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 3e-08 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 5e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-07 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 4e-07 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 5e-07 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 5e-07 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 6e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 9e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-06 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-06 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-06 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| cd04163 | 168 | cd04163, Era, E | 3e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-06 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 4e-06 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 4e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-06 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 5e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 6e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 7e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-06 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 7e-06 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 8e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-05 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 1e-05 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 1e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 1e-05 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 2e-05 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 2e-05 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 2e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-05 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 2e-05 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 2e-05 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 3e-05 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 4e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-05 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 6e-05 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 7e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 7e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-05 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 8e-05 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 8e-05 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 9e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 9e-05 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 9e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-04 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 1e-04 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-04 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 1e-04 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 1e-04 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 1e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 1e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 2e-04 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 2e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 2e-04 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-04 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 3e-04 | |
| PRK05703 | 424 | PRK05703, flhF, flagellar biosynthesis regulator F | 3e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 3e-04 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 3e-04 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 4e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 4e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 6e-04 | |
| PTZ00266 | 1021 | PTZ00266, PTZ00266, NIMA-related protein kinase; P | 6e-04 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 7e-04 | |
| PRK13808 | 333 | PRK13808, PRK13808, adenylate kinase; Provisional | 7e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 7e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| COG5258 | 527 | COG5258, GTPBP1, GTPase [General function predicti | 8e-04 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 8e-04 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 9e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 0.001 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.001 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.001 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.001 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.001 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.002 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 0.002 | |
| pfam12569 | 516 | pfam12569, NARP1, NMDA receptor-regulated protein | 0.002 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.002 | |
| pfam06375 | 561 | pfam06375, BLVR, Bovine leukaemia virus receptor ( | 0.002 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 0.003 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.003 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.003 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 0.003 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.003 | |
| pfam14303 | 147 | pfam14303, NAM-associated, No apical meristem-asso | 0.003 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.003 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 0.003 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.003 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.004 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.004 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.004 | |
| PRK12329 | 449 | PRK12329, nusA, transcription elongation factor Nu | 0.004 | |
| PRK05325 | 401 | PRK05325, PRK05325, hypothetical protein; Provisio | 0.004 | |
| pfam04935 | 206 | pfam04935, SURF6, Surfeit locus protein 6 | 0.004 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 574 bits (1481), Expect = 0.0
Identities = 252/539 (46%), Positives = 348/539 (64%), Gaps = 12/539 (2%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 848
E+ LR PI ++GHVD GKT LLD IRGT V EAGGITQ IGAT P + I + L
Sbjct: 1 EKKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPL 60
Query: 849 K--ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 906
K LK+PGLL IDTPGHE+FTNLR RG L DIAILVVDI G +PQTIE++N+LK
Sbjct: 61 KKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILK 120
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
R T F+VA NK+DR+ GWK+ +AP +++I++Q+ VQ E +L +++ QL E G +
Sbjct: 121 RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSA 180
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEV 1024
+ + + KD +T IVP SA +GEGIPDLL++L Q+ + E+L E + TVLEV
Sbjct: 181 DRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEV 240
Query: 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHH 1083
K G GTTIDV+L +G L +GD IVV G GPIVT +RALL P P+ E+R + +
Sbjct: 241 KEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPV 300
Query: 1084 KQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVC 1143
++ AA G+KI+A LE A+AG+ L VV D+D+E+VKEE E+++ + RI+ EGV
Sbjct: 301 DEVVAAAGVKISAPDLEDALAGSPLRVV-RDEDVEEVKEEVEEEIEEI--RIETDEEGVV 357
Query: 1144 VQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVK 1203
V+A TLGSLEAL+ L+ + IP+ +G + K+DV+ AS + EK Y ILAF+VK
Sbjct: 358 VKADTLGSLEALVNELREE--GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVK 415
Query: 1204 VTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNC 1263
V P+A E AE+ VKIF D+IY L + + ++ KE +K + ++ V P ++ILP
Sbjct: 416 VLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGY 475
Query: 1264 VFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAI 1322
VF + DP ++GV+V+ G K G P+ + D +G I I++ + V AK G + AI
Sbjct: 476 VFRQSDPAIVGVEVLGGTIKPGVPLI--KEDGKRVGTIKQIQDQGENVKEAKAGMEVAI 532
|
Length = 586 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 436 bits (1122), Expect = e-139
Identities = 221/539 (41%), Positives = 335/539 (62%), Gaps = 12/539 (2%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 850
LRSPI ++GHVD GKT LLD IRG+ V + EAGGITQ IGAT P + I +L
Sbjct: 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLK 60
Query: 851 N--ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
LK+PGLL IDTPGHE+FTNLR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 61 KFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY 120
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
T F+VA NK+DR+ GW++ P +++ +Q VQ + ++ +V +L E+G E
Sbjct: 121 KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAER 180
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKV 1026
+ + D +T I+P SAI+GEGIP+LL +L Q+ + E+L E + T+LEVK
Sbjct: 181 FDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240
Query: 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK-Q 1085
G G TID V+ +G+L +GD I + G IVT +RALL P P++E+R +
Sbjct: 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDE 300
Query: 1086 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1145
+ AA G+KI A GL+ +AG+ + VV D+++E VKEE +++++ + +ID EGV V+
Sbjct: 301 VVAAAGVKIAAPGLDDVMAGSPIRVV-TDEEIEKVKEEILKEVEEI--KIDTDEEGVVVK 357
Query: 1146 ASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVT 1205
A TLGSLEAL+ L+ V I + IG V K+DV+ A + ++ + Y I+AF+VKV
Sbjct: 358 ADTLGSLEALVNELRDMGVPIKKA--DIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVL 415
Query: 1206 PEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265
P A + ++ +K+F +IIY L ++F +I ++EEKKR+ + + P ++++P VF
Sbjct: 416 PGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475
Query: 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+ P ++GV+V+ G+ + G P+ D +G + S+++ + V +A GQ+ AI +
Sbjct: 476 RQSKPAIVGVEVLTGVIRQGYPLMKD--DGETVGTVRSMQDKGENVKSASAGQEVAIAI 532
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-136
Identities = 182/540 (33%), Positives = 258/540 (47%), Gaps = 66/540 (12%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
LR P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA P + I
Sbjct: 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---------- 52
Query: 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
K+PG+ IDTPGHE+FT +R+RG+ + DIAILVV G+ PQTIE++N K
Sbjct: 53 ---KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP 109
Query: 912 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 971
+VA+NK+D+ A K + +L+E G+ E +
Sbjct: 110 IVVAINKIDKP-------EANPDK-------------------VKQELQEYGLVPEEWG- 142
Query: 972 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031
G+ VP SA +GEGI +LL L++ + + K + TV+EVK+ +G G
Sbjct: 143 ----GDV-IFVPVSAKTGEGIDELLELILLLAEV-LELKANPEGPARGTVIEVKLDKGLG 196
Query: 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1091
V++ +G L +GD IV G G + T + L P L ++ AA
Sbjct: 197 PVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGD 256
Query: 1092 IKITAQGLEHAIAGTGLYVVG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTL 1149
+ I + + A A L VV + K E E + + R + V ++A T
Sbjct: 257 VFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQ 316
Query: 1150 GSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
GSLEAL LK D VK+ + +G + + DVM A+ A I+ F+V+V P
Sbjct: 317 GSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASD------AVIIGFNVRVDP 370
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
EAR LAE GVKI D+IY L + A + + E +K+E + LP
Sbjct: 371 EARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP----- 425
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQKAAIKV 1324
K + G V EG+ K G P+ + RD + I G + S++ V +KGQ+ I +
Sbjct: 426 -KVGAIAGCMVTEGVIKRGAPVRV-VRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAI 483
|
Length = 509 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-125
Identities = 211/522 (40%), Positives = 323/522 (61%), Gaps = 11/522 (2%)
Query: 808 TKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTP 865
T LLD IR T V + EAGGITQ IGAT P + I++ L A +K+PGLL IDTP
Sbjct: 475 TTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP 534
Query: 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925
GHE+FT+LR RG L D+A+LVVDI G +PQTIE++N+L+ T F+VA NK+D + GW
Sbjct: 535 GHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGW 594
Query: 926 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 985
+ P + +Q+ E ++L +++ +L E G + + + + +D T IVP S
Sbjct: 595 NISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVS 654
Query: 986 AISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVIEGHGTTIDVVLVNGVL 1043
A +GEGIP+LL+++ QK + E+L E + T+LEVK +G GTTID ++ +G L
Sbjct: 655 AKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTL 714
Query: 1044 HEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV-KGTYLHHKQIKAAQGIKITAQGLEHA 1102
GD IVV G IVT +RALL P P+ E+R + + ++ AA G+KI A GLE
Sbjct: 715 RRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774
Query: 1103 IAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSD 1162
+AG+ + +V + +E KEE M++++ DK EG+ ++A TLGSLEAL L+
Sbjct: 775 LAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDK--EGILIKADTLGSLEALANELRKA 832
Query: 1163 AVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIA 1222
+ I + +G + KKDV+ A ++ Y IL F+VKV PEA+E AE+ GVKIF+
Sbjct: 833 GIPIKKA--EVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVD 890
Query: 1223 DIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIA 1282
+IIY L + +T ++ +E+KKRE ++ + P ++++LP+C+F + +P ++GV+V+EG
Sbjct: 891 NIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPAIVGVEVLEGTL 950
Query: 1283 KVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+VG + + D + +G + SI++ + V AK G+ AI +
Sbjct: 951 RVGVTLI--KEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAI 990
|
Length = 1049 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 3e-81
Identities = 85/211 (40%), Positives = 113/211 (53%), Gaps = 43/211 (20%)
Query: 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854
P+ +MGHVD GKT LLD IR TNV GEAGGITQ IGA P + +
Sbjct: 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPID--------------V 46
Query: 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
K+PG+ IDTPGHE+FTN+R+RG+ + DIAILVV G+ PQTIE++N K N IV
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974
A+NK+D+ YG R+ +++L G ++
Sbjct: 107 AINKIDKPYG--------------------TEADPERVKNELSELGLVG---------EE 137
Query: 975 RGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005
G +IVP SA +GEGI DLL ++ +
Sbjct: 138 WGGDVSIVPISAKTGEGIDDLLEAILLLAEV 168
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|239674 cd03703, aeIF5B_II, aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-53
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1076
LQ TVLEVK EG GTTIDV+L +G L EGD IVVCGL GPIVT +RALL P P+KELRV
Sbjct: 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRV 60
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAME 1126
K ++H K++KAA G+KI A LE AIAG+ L VVGP+D++E++KEE ME
Sbjct: 61 KSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEVME 110
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. Length = 110 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-43
Identities = 159/516 (30%), Positives = 226/516 (43%), Gaps = 139/516 (26%)
Query: 774 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA 833
K D + R P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA
Sbjct: 231 VKLVSLLEDDDEEDLVP--RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGA 288
Query: 834 TYFPAENIRERTRELKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIM 891
Y ++ G + +DTPGHE+FT +R+RG+ + DI +LVV
Sbjct: 289 -Y-----------------QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAAD 330
Query: 892 HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951
G+ PQTIE++N K IVA+NK+D+ +
Sbjct: 331 DGVMPQTIEAINHAKAAGVPIIVAINKIDK------------------PGANPDR----- 367
Query: 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE 1009
+ +L E G+ E + G+T VP SA +GEGI +LL +LL E
Sbjct: 368 ---VKQELSEYGLVPEEW-----GGDTI-FVPVSAKTGEGIDELLEAILLQ-------AE 411
Query: 1010 KLTFRNELQC--------TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061
L EL+ TV+E K+ +G G V++ NG L GD IVV G TT
Sbjct: 412 VL----ELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGD-IVVAG------TT 460
Query: 1062 ---IRALLTPHPMKELRVKGTYLHHKQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD 1116
+RA++ + K++K A + GL AG VV +D
Sbjct: 461 YGRVRAMVDD-------------NGKRVKEAGPSTPVEILGLSGVPQAGDEFVVV---ED 504
Query: 1117 LEDVKEEA-------------------MEDMKSVMSRIDKSGEG----VCVQASTLGSLE 1153
+ +E A +E++ M K GE + ++A GS+E
Sbjct: 505 EKKAREIAEYRQEKAREKKLARQQRVSLENLFEQM----KEGEVKELNLIIKADVQGSVE 560
Query: 1154 AL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARE 1210
AL LE L +D VK+ + +G + + DV A+ A I+ F+V+ +AR+
Sbjct: 561 ALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARK 614
Query: 1211 LAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE 1246
LAE+ GV I IIY L D A ++ + E + E
Sbjct: 615 LAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEE 650
|
Length = 746 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 3e-42
Identities = 156/551 (28%), Positives = 245/551 (44%), Gaps = 93/551 (16%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R P+ IMGHVD GKT LLD IR T V +GEAGGITQ IGA + E+ + T
Sbjct: 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMIT------- 138
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
+DTPGHE+FT++R+RG+ + DI +LVV G+ PQTIE+++ K N
Sbjct: 139 --------FLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI 190
Query: 913 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN 972
IVA+NK+D+ + N D ++ +L E G+ E +
Sbjct: 191 IVAINKIDK----------------PEANPD----------RVKQELSEYGLVPEDW--- 221
Query: 973 KDRGETFNIVPTSAISGEGIPDLL-LLLVQWTQKTMVEKLTFRNELQC--TVLEVKVIEG 1029
G+T VP SA++G+GI +LL ++L+Q + VE+L Q V+E ++ +G
Sbjct: 222 --GGDTI-FVPVSALTGDGIDELLDMILLQ----SEVEELKANPNGQASGVVIEAQLDKG 274
Query: 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI----RALLTPHPMKELRVKGTYLHHKQ 1085
G V++ +G L GD +VV G + I +++ P K + + G
Sbjct: 275 RGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSKPVEILGL-----S 329
Query: 1086 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEE--AMEDMKSVMSRIDKSGEGVC 1143
A G + E G + ++++ + + +
Sbjct: 330 DVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNII 389
Query: 1144 VQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1200
++A GSLEA+ LE L ++ VK+ V +G + + D+ AS A I+ F
Sbjct: 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASA------SNAIIIGF 443
Query: 1201 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL-----KEEKKREAADEAVFPC 1255
+V+ A+ +AE V I +IY L D+ A + + +EE +A VF
Sbjct: 444 NVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVF-- 501
Query: 1256 VLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDT 1313
K + G V EG+ K G P+ + RD + I G I S++ V
Sbjct: 502 ---------NVPKIGNIAGCYVTEGVIKRGNPLRV-IRDGVVIFEGEIDSLKRFKDDVKE 551
Query: 1314 AKKGQKAAIKV 1324
G + I +
Sbjct: 552 VSNGYECGIGI 562
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 3e-40
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 62/226 (27%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRG----------------TNVQEGEAGGITQQIGATYF 836
R I+GHVD GKT L D + ++E GIT +I A F
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 837 PAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 896
+ + +IDTPGH FT RG+ D AILVVD + G+ P
Sbjct: 62 ETKKRL----------------INIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMP 105
Query: 897 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956
QT E L L K IV +NK+DR+ E +V
Sbjct: 106 QTREHLLLAKTLGVPIIVFINKIDRVDD---------------------AELEE----VV 140
Query: 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
++ + + + GET +VP SA++GEGI +LL L +
Sbjct: 141 EEISRELLEKYGF-----GGETVPVVPGSALTGEGIDELLEALDLY 181
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 4e-39
Identities = 138/519 (26%), Positives = 222/519 (42%), Gaps = 102/519 (19%)
Query: 765 AVTRKKEPAAKSKEPEVDATPKQAEENL-RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE 823
+ +++ K +D T E ++ R PI I+GHVD GKT LLD IR T + + E
Sbjct: 214 NIISEEKNNINEKTSNLDNTSAFTENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE 273
Query: 824 AGGITQQIGA--TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 881
AGGITQ+IGA F ++ ++ ++ +DTPGHE+F+++RSRG+ +
Sbjct: 274 AGGITQKIGAYEVEFEYKDENQK--------------IVFLDTPGHEAFSSMRSRGANVT 319
Query: 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941
DIAIL++ G++PQTIE++N ++ N IVA+NK+D+ N
Sbjct: 320 DIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDK----------------ANAN 363
Query: 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
T+ +I QL + + E G ++P SA G I LL ++
Sbjct: 364 TE----------RIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETIL- 406
Query: 1002 WTQKTMVEKLTFR----NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP 1057
+ E + Q +LE + + G +++ NG LH GD IV
Sbjct: 407 ----LLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIV------- 455
Query: 1058 IVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA-GTGLYVVGPDDD 1116
++R L +K A + GL A G V + +
Sbjct: 456 ---------IGTSYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKE 506
Query: 1117 -LEDVKEEAMEDMKSVMSRI------------DKSGEGVCVQASTLGSLEALLEFL---K 1160
+ + + K RI +K + ++ T GS+EA++ +
Sbjct: 507 AKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIP 566
Query: 1161 SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIF 1220
V++ + S+G V + DV AS A ILAF+ + P A++ A +L + I
Sbjct: 567 QKKVQLNILYASLGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIK 620
Query: 1221 IADIIYHLFDQFTAYINNLK--EEKKR---EAADEAVFP 1254
+IY L + A + +L E KK EA + VFP
Sbjct: 621 EYQVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFP 659
|
Length = 742 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 62/207 (29%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
++GHVD GKT L + G ++ E R T + + P
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDR-RGTRKETFLDTLKEERERGITIKTGV-VEFEWP 60
Query: 858 GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915
+ IDTPGHE F+ RG D A+LVVD G+EPQT E LN+ IVA
Sbjct: 61 KRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVA 120
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
+NK+DR+ + +F+ L +I LK G +
Sbjct: 121 VNKIDRV---------------------GEEDFDEVLREIKELLKLIG-------FTFLK 152
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQW 1002
G+ I+P SA++GEGI +LL +V+
Sbjct: 153 GKDVPIIPISALTGEGIEELLDAIVEH 179
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|221359 pfam11987, IF-2, Translation-initiation factor 2 | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 7e-22
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 1125 MEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDV 1181
+ED+ + + + ++A GSLEA+ + L+ +D VK+ + +G + + DV
Sbjct: 3 LEDLFEQIKEGEVKELNLILKADVQGSLEAIKDSLEKLSTDEVKVNIIHAGVGAITESDV 62
Query: 1182 MRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1234
M AS A I+ F+V+ +AR+LAE+ GV I IIY L D A
Sbjct: 63 MLASAS------NAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKA 109
|
IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyzes the hydrolysis of GTP following initiation-complex formation. Length = 109 |
| >gnl|CDD|239672 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-21
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR----ALLTPHPMKE 1073
+ TV+E K+ +G G V++ NG L +GD IV G G I T + ALL P
Sbjct: 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTP 61
Query: 1074 LRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110
+ + KA G+ + A E G+ V
Sbjct: 62 VEI---LGLKDVPKAGDGVLVVASEKEAKEIGSYRLV 95
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. Length = 95 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (200), Expect = 3e-15
Identities = 129/577 (22%), Positives = 246/577 (42%), Gaps = 63/577 (10%)
Query: 221 EDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTD 280
E+E E+ + +E + ++++ + + D L + K D+ + E D
Sbjct: 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
Query: 281 KKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSE 340
+ KK + + A E + D K K EE + K + ++ + ++ +
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 341 VLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEK 400
E+ E + K+++ ++ +D K K + + + + KKK E
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK--KADELKKAAAAKKKADEA 1423
Query: 401 EKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESA 460
+K E+ +E + E D A +K E +K E A
Sbjct: 1424 KKKAEEKKKADEAK---------------------KKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 461 ASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEA 520
K ++ KK E +KKA A A++ ++ K+E + K ++ K KK + + ++ +EA
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Query: 521 LARRKEAEERKKREEEERLR--KEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
K+A+E KK EE ++ K+ EE+K+ +EL ++AEE ++ +EK+K + KK +E
Sbjct: 1522 ----KKADEAKKAEEAKKADEAKKAEEKKKADEL-KKAEEL-KKAEEKKKAEEAKKAEED 1575
Query: 579 KLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLK 638
K + ++ EEA++ E R + + K K +K+ + K
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA------------- 1622
Query: 639 EDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDE 698
E +K +E+++ + ++ E E+ ++ E L E+ A +E + EED E
Sbjct: 1623 ----EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Query: 699 EWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAE--KPAVAVKKAIP 756
E K A +DE+ +E +E K A + AE K A +KKA
Sbjct: 1679 E------------AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Query: 757 EQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLR 793
E +K+++A +E K++E + D K+ +L+
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (199), Expect = 4e-15
Identities = 100/434 (23%), Positives = 183/434 (42%), Gaps = 33/434 (7%)
Query: 383 KGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE---LGQGPAPQEEKVQVQPPE 439
K E V + + KK +E +K ER +E E+ Q EE + +
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKN 499
ADE EEK+++ +KKK ++ +K E K A A + K +A E KK
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER------KRLEELE 553
+K + + + +E ++ +E K++ + +K EE++ K+ EE +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 554 RQAEEAKRRKKEKEKEKLLKKKQEGKLLT---GKQKEEARRLEAMRNQF----LAKGIPL 606
++A+E K+ K+K KKK E K K+ EEA++ + + + A+
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 607 PTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKV 666
+ + A + K + K A A K+ + E+K+ + K++ E +K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
Query: 667 EEG----------ESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAF 716
+E E+ EEK + + K E+++ ++ E K+ +D N+ ++ A
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA- 1583
Query: 717 DDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKS 776
EEA E +++ +K + AE+ A + I + LK + +K E K
Sbjct: 1584 --EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 777 KEPEVDATPKQAEE 790
+ E K+AEE
Sbjct: 1642 EAEEK----KKAEE 1651
|
Length = 2084 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 1e-14
Identities = 65/262 (24%), Positives = 97/262 (37%), Gaps = 54/262 (20%)
Query: 801 GHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GHVD GKT LL + G E + G+T +G YFP +
Sbjct: 7 GHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------------YRL 52
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 916
G ID PGHE F + G G D A+LVVD G+ QT E L +L + IV +
Sbjct: 53 GF--IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
K DR+ N + M + QI L
Sbjct: 111 TKADRV------------------NEEEIKRTEMFMKQI---LNSYIFLKNA-------- 141
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDV 1036
I TSA +G+GI +L L + ++ + L+ + ++G GT +
Sbjct: 142 ---KIFKTSAKTGQGIGELKKELKNLLES--LDIKRIQKPLRMAIDRAFKVKGAGTVVTG 196
Query: 1037 VLVNGVLHEGDQIVVCGLQGPI 1058
+G + GD + + + +
Sbjct: 197 TAFSGEVKVGDNLRLLPINHEV 218
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 54/199 (27%), Positives = 76/199 (38%), Gaps = 52/199 (26%)
Query: 801 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GH+D GKT L+ + G + E + GIT +G Y L L
Sbjct: 6 GHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD----------LPDGKRLGF- 54
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 916
ID PGHE F G+G D +LVV G+ PQT E L +L+ + + +V L
Sbjct: 55 ----IDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKGLVVL 110
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
K D V + RL + ++ E T L
Sbjct: 111 TKADL----------------------VDED---RLELVEEEILELLAGTFL-------- 137
Query: 977 ETFNIVPTSAISGEGIPDL 995
I P S+++GEGI +L
Sbjct: 138 ADAPIFPVSSVTGEGIEEL 156
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (177), Expect = 2e-12
Identities = 145/664 (21%), Positives = 288/664 (43%), Gaps = 57/664 (8%)
Query: 44 EEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGG 103
E + +E +KKK + + + + D++K + E A+ KKK++ K
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA----KKKAEEAKKKA 1331
Query: 104 NNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAA 163
+ A K+ + + + D+ + + A++ K +E KK
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA----------- 1380
Query: 164 AFDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDE 223
DA +E E D + +++++D E K KK + DE +
Sbjct: 1381 --DAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 224 DVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKK 283
E+ + DE ++ KK++++ K + E E K + +E + KK
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAE-------EAKKADEAKKKAEEAKKADEAKK 1490
Query: 284 KSNKGGRMRSSAFDLLENEDEDDDEKK-DKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVL 342
K+ + + A E + + D+ KK ++ ++ + ++ KK +KK
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA-------- 1542
Query: 343 LDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNK-----KKK 397
+E+ ++ ++ A + K+ E + + K E + + + K
Sbjct: 1543 -EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
Query: 398 KEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
+E++K ++E + E+ KI AE + +EEK +V+ + + + ++ +E
Sbjct: 1602 EEEKKMKAEEAKKAEE--AKIKAE--ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
E+ ++ KK +E +KKA A AE+ ++ +EA+ K + E K ++++++
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL-------KKEAEEAKKAEELKKK 1710
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
+ +K+AEE KK EEE K EE +K EE +++AEEAK+ ++EK+K LKK++E
Sbjct: 1711 EAE--EKKKAEELKK-AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPL 637
K ++++EA E + + + + + K+ K + N + +
Sbjct: 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM 1827
Query: 638 KEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDD 697
EDS KE K L E D E K + + E+ + AD KE +++E+D+++
Sbjct: 1828 -EDS-AIKEVADSKNMQLEEADAFEKHKFNK-NNENGEDGNKEADFNKEKDLKEDDEEEI 1884
Query: 698 EEWD 701
EE D
Sbjct: 1885 EEAD 1888
|
Length = 2084 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 54/219 (24%)
Query: 801 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
GHVD GKT LL I G N + E + G+T +G Y+P + R V
Sbjct: 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR-------------VL 53
Query: 858 GLLVIDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVA 915
G ID PGHE F +N+ + G G D A+LVV G+ QT E L +L++ N VA
Sbjct: 54 GF--IDVPGHEKFLSNMLA-GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVA 110
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L K DR+ + + +++ Q+ L+E G
Sbjct: 111 LTKADRV-------DEARIAEVRR--------------QVKAVLREYGF----------- 138
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014
+ T+A G GI L L+Q ++ + FR
Sbjct: 139 -AEAKLFVTAATEGRGIDALREHLLQLPEREHAAQHRFR 176
|
Length = 614 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 58/216 (26%), Positives = 80/216 (37%), Gaps = 67/216 (31%)
Query: 798 CIMGHVDTGKTKLLDCI---------RGTNVQ-------EGEAGGITQQIGATYFPAENI 841
I+ H+D GK+ L D + R Q E E G IT I
Sbjct: 4 SIIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERG-IT------------I 50
Query: 842 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+ + L A LL +IDTPGH F+ SR C+ A+LVVD G+E QT+
Sbjct: 51 KAQAVRLFYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLA 110
Query: 901 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ L N E I +NK+D A +KQ+ DV
Sbjct: 111 NFYLALENNLEIIPVINKID-------LPAAD-PDRVKQEIEDV---------------- 146
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
G++ + SA +G G+ DLL
Sbjct: 147 -LGLDAS------------EAILVSAKTGLGVEDLL 169
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--------YFPAENIRERTRELK 849
I+ H+D GKT L + I GI +IG + E +ER +
Sbjct: 14 GIVAHIDAGKTTLTERI-------LFYTGIISKIGEVHDGAATMDWMEQE--QERGITIT 64
Query: 850 ANAT---LKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 905
+ AT K + +IDTPGH FT R + D A++VVD + G+EPQT
Sbjct: 65 SAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA 124
Query: 906 KMRNTEFIVALNKVDRL 922
I+ +NK+DRL
Sbjct: 125 DKYGVPRILFVNKMDRL 141
|
Length = 697 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 48/218 (22%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-----YFPAENIRERT------- 845
CI+ HVD GKT L D + + G I++++ E R T
Sbjct: 4 CIIAHVDHGKTTLSDSLLASA------GIISEKLAGKARYLDTREDEQERGITIKSSAIS 57
Query: 846 --RELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
E + L+ +ID+PGH F++ + L D A++VVD + G+ QT L
Sbjct: 58 LYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVL 117
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK-- 960
+ ++ +NK+DRL I + + + RL++IV +
Sbjct: 118 RQALEERVKPVLVINKIDRL--------------ILELKLSPEEAYQ-RLLRIVEDVNAI 162
Query: 961 ------EQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992
E+ + + +G N+ SA+ G G
Sbjct: 163 IETYAPEEFKQEKWKFS-PQKG---NVAFGSALDGWGF 196
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 44/207 (21%)
Query: 799 IMGHVDTGKTKLLDCIRGT--------NVQEGEAGGITQQIG--ATYFPAENIRERTREL 848
++GHVD+GKT L + N Q E G IT +G + E +
Sbjct: 5 LLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG-ITLDLGFSSFEVDKPKHLE---DN 60
Query: 849 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
+ LV D PGH S G+ + D+ +LVVD G++ QT E L + ++
Sbjct: 61 ENPQIENYQITLV-DCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLVIGELL 119
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
IV LNK+D + + R +K Q+
Sbjct: 120 CKPLIVVLNKIDLIPEEERKRKIEKMKKRLQKTL-------------------------- 153
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDL 995
K R + I+P SA GEG +L
Sbjct: 154 ---EKTRLKDSPIIPVSAKPGEGEAEL 177
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-10
Identities = 53/200 (26%), Positives = 72/200 (36%), Gaps = 56/200 (28%)
Query: 800 MGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
GH+D GKT LL + G + E + GIT +G Y E+
Sbjct: 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGV-------------- 51
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVA 915
+ ID PGH F + G G D A+LVV GL QT E L +L + + I+
Sbjct: 52 --MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIV 109
Query: 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L K DR+ R+ Q + Q+ L
Sbjct: 110 LTKADRVD-------------------------EARIEQKIKQILAD---LSL------- 134
Query: 976 GETFNIVPTSAISGEGIPDL 995
I TSA +G GI +L
Sbjct: 135 -ANAKIFKTSAKTGRGIEEL 153
|
Length = 447 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAG-GITQQIGATYFPAENIRERTRELKANATLKVP 857
I+G + GK+ LL+ + G + E G T+ I E + K N
Sbjct: 6 IVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYV-----TTVIEEDGKTYKFN------ 54
Query: 858 GLLVIDTPGHESFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
++DT G E + +R + DI ILV+D+ LE QT E ++ +
Sbjct: 55 ---LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-GV 110
Query: 911 EFIVALNKVD 920
I+ NK+D
Sbjct: 111 PIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 5e-09
Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 42/310 (13%)
Query: 419 LAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA 478
L +L +G + E + E P A+ + GEE E+ + + K E E E +
Sbjct: 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 479 AAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEER 538
A E + +G+ EA E KG + + EA E E E EE
Sbjct: 687 AERKGEQEGEGEIEAKE-----ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
+ E E + E+E + + + + + + + + + EG++ G+ E
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM---------- 791
Query: 599 FLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
GD+ A K + + G + D E K+ E +QE E
Sbjct: 792 ---------KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKD-ETGEQELNAE- 840
Query: 659 DVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDD 718
+ GE ++ E+G V+ E E EEE+++++EE + + ++
Sbjct: 841 NQGEAKQDEKG----VDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE------------EE 884
Query: 719 EEADSEPEPL 728
EE + EPL
Sbjct: 885 EEEEENEEPL 894
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA-TLKV 856
CI GH+ GKT LLD + + + + + ++ +ER +K+N +L +
Sbjct: 4 CIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLVL 63
Query: 857 PG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+ +IDTPGH +F + + LCD +LVVD++ GL T +
Sbjct: 64 EDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQEG 123
Query: 910 TEFIVALNKVDRL 922
++ +NK+DRL
Sbjct: 124 LPMVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-08
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
I+ H+D GK+ L D + ++ G I++ ++ + ++ RER +KA A L
Sbjct: 7 SIIAHIDHGKSTLADRL----LEY--TGAISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L +IDTPGH F+ SR C+ A+L+VD G+E QT+ ++ L
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120
Query: 908 RNTEFIVALNKVD 920
+ E I +NK+D
Sbjct: 121 NDLEIIPVINKID 133
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-08
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA--- 852
I+ H+D GK+ L D + ++ GG+++ ++ A + +I RER +KA A
Sbjct: 13 SIIAHIDHGKSTLADRL----LEL--TGGLSEREMRAQVLDSMDIERERGITIKAQAVRL 66
Query: 853 TLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
K L +IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L
Sbjct: 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 126
Query: 908 RNTEFIVALNKVD 920
N E I LNK+D
Sbjct: 127 NNLEIIPVLNKID 139
|
Length = 603 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 34/184 (18%), Positives = 77/184 (41%), Gaps = 2/184 (1%)
Query: 420 AELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
+ Q P +K Q + + + A+++ E+ + ++ +K ++ ++AA
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
A + KQ +++A + + K++ +K +K+ + Q + +A K++ E
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+K E E K E + +A+ + + K + + K E + A EA R
Sbjct: 173 KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA--KAAAEAAAKAEAEAAAAAAAEAERKAD 230
Query: 600 LAKG 603
A+
Sbjct: 231 EAEL 234
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 76/318 (23%), Positives = 146/318 (45%), Gaps = 34/318 (10%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A SK K+++KE E+ + ERT + D LE IL EL + Q + ++ Q + A
Sbjct: 165 AGISKYKERRKETER-KLERTRENLDRLEDILNELER----QLKSLERQ-------AEKA 212
Query: 448 D---EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQ---QGKSEAVETKKNDG 501
+ E E + E A + ++ +E E+ AE++ + + +E K +
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
Query: 502 KSKGPEKKMSKQVREMQEAL------ARRKEAEERKKREEEERLRKEEEERK-RLEELER 554
+ + E + +++ E+Q+ L R E +++ RE L ++ EE + +LEELE
Sbjct: 273 RLEVSE--LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
+ +E E E EKL + K+E + L + +E LE + ++ L +
Sbjct: 331 KLDELAEELAELE-EKLEELKEELESLEAELEELEAELEELESRLEE----LEEQLETLR 385
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
SK + + + S +++ E + +E+ Q++ E LL E +++E ++
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELE 443
Query: 675 EEKPEIADAPKENEVEEE 692
E + E+ + +E E EE
Sbjct: 444 ELEEELEELQEELERLEE 461
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGHE F+ R D A++V+D G+EPQT + + ++R I +NK+D
Sbjct: 75 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLD 134
Query: 921 R 921
R
Sbjct: 135 R 135
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 915
+ DTPGHE +T + G+ D+AIL+VD G+ QT I +LL +R+ +VA
Sbjct: 90 IADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI--ASLLGIRH--VVVA 145
Query: 916 LNKVDRLYGWKTCRNAPIVKA 936
+NK+D L + IV
Sbjct: 146 VNKMD-LVDYSEEVFEAIVAD 165
|
Length = 431 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 95/556 (17%), Positives = 195/556 (35%), Gaps = 72/556 (12%)
Query: 248 SGKNSSTFDLLVNENDDVKED-----KDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENE 302
SG + +NE+DD++E + ++ +S+ G + S ENE
Sbjct: 3820 SGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVS--ENE 3877
Query: 303 DED-DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGA 361
+ D ++E +D DEE I + +S +E L DE N +
Sbjct: 3878 NSDSEEENQDLDEEVNDI-----------PEDLSNSLNEKLWDEPN--------EEDLLE 3918
Query: 362 VDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE 421
+ K ++ ESD V+K + +++KE E+ S+ +++ I
Sbjct: 3919 TEQKSNEQSAANNESD--LVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
Query: 422 LGQGPAPQE-----EKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKE 472
Q P E E +++ E D+ D + +E KEE+ A +K E
Sbjct: 3977 NSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADA-----EKDEPM 4031
Query: 473 KEKKAAAAAAAEDKQQGKSEAVETKKNDGK--SKGPEKKMSKQVREMQEALARRKEAEER 530
+++ D+ + + + ++D K G E + V+E +E+ +++E
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE----ENVQENEESTEDGVKSDEE 4087
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK----EKEKLLKKKQEGKLLTGK-- 584
++ E + + K + + EA +K E E+L ++ T
Sbjct: 4088 LEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGE 4147
Query: 585 ----QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
Q++ + EAM + ++Q + + +
Sbjct: 4148 FEQVQEDTSTPKEAMSEADRQY--------QSLGDHLREWQQANRIHEWEDLT----ESQ 4195
Query: 641 SIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKE-NEVEEEDDDDDEE 699
S + E + E D+ E+ + +++ P N +D+ DE
Sbjct: 4196 SQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEV 4255
Query: 700 WDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQP 759
D + D +++ ++ +E + + E + D ++ K P P
Sbjct: 4256 GDKQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVKITPAMP 4315
Query: 760 LKSQDAVTRKKEPAAK 775
+ + K E + K
Sbjct: 4316 IDEARDLWNKHEDSTK 4331
|
Length = 4600 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 69/316 (21%), Positives = 114/316 (36%), Gaps = 68/316 (21%)
Query: 797 CCIMGHVDTGKTKLL-----DC--IRGTNVQEGEAGGITQQIGATYF-------PAENIR 842
+GHVD GK+ L+ D I +++ E + F E R
Sbjct: 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEE--R 67
Query: 843 ER--TRELK-ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD-------IMH 892
ER T ++ + +ID PGH F G+ D+A+LVVD
Sbjct: 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF 127
Query: 893 GLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951
G+ QT E L + + IVA+NK+D L W + F
Sbjct: 128 GVGGQTREHAFLARTLGIKQLIVAVNKMD-LVSWD------------------EERFEE- 167
Query: 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
+V V++L + + Y KD +P S G+ + + + T++E L
Sbjct: 168 IVSEVSKLLKM-----VGYNPKD----VPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL 218
Query: 1012 --------TFRNELQCTVLEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTI 1062
L+ + +V I G G T+ V V GV+ G ++ + +V +
Sbjct: 219 DQLEPPERPLDKPLRLPIQDVYSISGIG-TVPVGRVESGVIKPGQKVTF--MPAGVVGEV 275
Query: 1063 RALLTPHPMKELRVKG 1078
+++ H G
Sbjct: 276 KSIEMHHEEISQAEPG 291
|
Length = 428 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 9e-07
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM-QEALA 522
++K K E+++K AE+ QQ ++ E K K + ++ KQ E ++A
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK---KKQEGK 579
++K+AEE + K E E KR ++A ++K E E K KK+
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Query: 580 LLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
K EA++ + A EA + K + K+A +A
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 429 QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQ 488
+++K Q Q E A E++ + EKE AA ++KK+ +E K+ A E +
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Query: 489 GKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKR 548
+ A K + + A A +K A E KK+ E E +K E K+
Sbjct: 141 AAAAA---------------KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Query: 549 LEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
E E A+ A KK+ E E K E K
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216
|
Length = 387 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 861 VIDTPGHESFT-NLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
+ DTPGHE +T N+ + G+ D+AIL+VD G+ QT I S LL +R +V
Sbjct: 82 IADTPGHEQYTRNMVT-GASTADLAILLVDARKGVLEQTRRHSYIAS--LLGIR--HVVV 136
Query: 915 ALNKVD 920
A+NK+D
Sbjct: 137 AVNKMD 142
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
G Q+ Q +P A + +K E++ EE+ + ++ ++KE E++AAA AA
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ +Q +A E +K Q A+ K+A E K + E E +K +
Sbjct: 105 KQAEQAAKQAEEKQK-------------------QAEEAKAKQAAEAKAKAEAEAEKKAK 145
Query: 544 EERKRLEELERQ---AEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL 600
EE K+ E E + A EAK++ E +K+ + K + K K E + +A +
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK-AEAKAKAKAEEAKAKAEAAKAK 204
Query: 601 AKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIE-SKEKEQEKQE 653
A EAA+K +A + D + EKQ
Sbjct: 205 A--------AAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQG 250
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
+V DTPGHE +T + G+ D+A+L+VD G+ QT I S LL +R+ ++
Sbjct: 83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIAS--LLGIRH--VVL 138
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQ 939
A+NK+D L + I K
Sbjct: 139 AVNKMD-LVDYDEEVFENIKKDYLA 162
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 26/135 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-NATLKV 856
++G GK+ LL+ + +G ++ TR+ L
Sbjct: 1 VVVGRGGVGKSSLLNAL----------------LGGEVGEVSDVPGTTRDPDVYVKELDK 44
Query: 857 PG--LLVIDTPGHESFTNLRSRGSGL-----CDIAILVVDIMHG--LEPQTIESLNLLKM 907
L+++DTPG + F L D+ +LVVD E + L L+
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 908 RNTEFIVALNKVDRL 922
I+ NK+D L
Sbjct: 105 EGIPIILVGNKIDLL 119
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 48/279 (17%), Positives = 106/279 (37%), Gaps = 2/279 (0%)
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
P A A E E KEE ++ K++K+K+KEK + K++ K + +
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLR-KEEEERKRLEELERQA 556
K K K E+ ++ + +E + + ++ K++ + + EEE++R E
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
Query: 557 EEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASK 616
+ + +E+EK ++ + T +E+ R + ++ + + P AS
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASP 265
Query: 617 RPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ +K+ + + P + + K + + + + V + S + E
Sbjct: 266 ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK-RKEIVTVLQDAQGVGKIVSNVILE 324
Query: 677 KPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
+ D EN V E + + + +G
Sbjct: 325 GKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGG 363
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 66/331 (19%), Positives = 135/331 (40%), Gaps = 20/331 (6%)
Query: 381 VNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEP 440
+ + + KKK+++ K ++ E+++L + Q +E K+ Q
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQ---- 744
Query: 441 VAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND 500
+++ EE+ ++++K + KEK+ A +K + + E E K
Sbjct: 745 ----KIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQ 800
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL-------- 552
+ ++ K+ E+ E E EE+ K EE E L E +E ++LE+L
Sbjct: 801 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 860
Query: 553 -ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN-QFLAKGIPLPTGD 610
E +E ++ ++E+L ++K + +L + ++KE+ + E Q
Sbjct: 861 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEI 920
Query: 611 KEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGE 670
+E ++ K +S + +++ E ++E+E++ L + E V
Sbjct: 921 EERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMA 980
Query: 671 SLTVEEKPEI--ADAPKENEVEEEDDDDDEE 699
EEK E D K+ +EEE + E
Sbjct: 981 IAEFEEKEERYNKDELKKERLEEEKKELLRE 1011
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069
L+ V +V +G GT + +G L +GD++ V G + +++L
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK 53
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 3/156 (1%)
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
+E++ E ++E A K+ ++ K + +E + E+ + K E E + +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE---AKRR 562
+++ ++ E++E L KE E K E EER EE + L ELE EE
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
E+ +E ++E L + E LE ++ +
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKRE 405
|
Length = 1163 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 45/147 (30%)
Query: 862 IDTPG-HESFTNLRSR-------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+DTPG H+ L R D+ + VVD + L LLK T I
Sbjct: 56 VDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPVI 115
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
+ LNK+D +K + L+ ++ +LKE E
Sbjct: 116 LVLNKIDL---------------VKDKE---------DLLPLLEKLKELHPFAE------ 145
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLV 1000
I P SA+ GE + +LL +V
Sbjct: 146 -------IFPISALKGENVDELLEYIV 165
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 27/164 (16%), Positives = 70/164 (42%)
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
V EEE + A ++ +++ + E E+ AAA A E K + + A + + +
Sbjct: 34 HSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAE 93
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
+ + A A + + +K ++++ + ++++ KR + + + ++ +
Sbjct: 94 AAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRR 153
Query: 567 EKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGD 610
+ +KK++ + T K E E + LA+ + + +
Sbjct: 154 RGRRRRRKKKKKQKPTEKIPREVVIPETITVAELAEKMAVKAAE 197
|
Length = 746 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 58/270 (21%), Positives = 99/270 (36%), Gaps = 75/270 (27%)
Query: 799 IMGHVDTGKTKLLDCI--------RGTNVQEGEAG----------GITQQIGATYFPAEN 840
I+ H+D GKT + I + V G A GIT Q AT ++
Sbjct: 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCFWKD 63
Query: 841 IRERTRELKANATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMHGLE 895
R + +IDTPGH FT +LR + D A+ V D + G++
Sbjct: 64 HR----------------INIIDTPGHVDFTIEVERSLR-----VLDGAVAVFDAVAGVQ 102
Query: 896 PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955
PQT I +NK+DR A + ++Q ++ + V +
Sbjct: 103 PQTETVWRQADRYGVPRIAFVNKMDRT-------GADFYRVVEQ----IREKLGANPVPL 151
Query: 956 VTQLKEQG--------MNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007
+ + + + Y + + GE IP+ LL + ++ +
Sbjct: 152 QLPIGAEDDFEGVVDLIEMKALYWDGELGEKIEETD--------IPEDLLEEAEEAREEL 203
Query: 1008 VEKLTFRNELQCTVLEVKVIEGHGTTIDVV 1037
+E L E+ ++E K +EG T + +
Sbjct: 204 IETLA---EVDDELME-KYLEGEEITEEEI 229
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 7 IIAHVDHGKTTLVDA-------------LLKQSG-TFRENEEVGERVMDSNDLERERGIT 52
Query: 848 -LKANATLKVPG--LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
L N + + +IDTPGH F R + D +L+VD G PQT L
Sbjct: 53 ILAKNTAITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 112
Query: 905 LKMRNTEFIVALNKVDR 921
+ IV +NK+DR
Sbjct: 113 ALEAGLKPIVVINKIDR 129
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 389 QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+++KK++++ E ++ + E++ + A QE+K Q E A A
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA---EEAAKQAALK 130
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+K EE ++AA+ K K + E ++ AA AAAE K++ ++EA + + K K
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK---- 186
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
EA A K A E KK+ E E +K E K+ E +A AK + K
Sbjct: 187 ---------AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Query: 569 EKLLKKKQEGKLLTGKQKEEA 589
+ + + +
Sbjct: 238 AEKAAAAKAAEKAAAAKAAAE 258
|
Length = 387 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
DTPGHE F+ R D A++V+D G+EPQT++ + ++R+ +NK+DR
Sbjct: 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145
|
Length = 528 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 40/147 (27%), Positives = 80/147 (54%), Gaps = 16/147 (10%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E EE A ++ KKE E KK A A E+ + ++E E + + +++ +K+ K+
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF-EKELRERRNE--LQKLEKR 90
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ + +E L R+ E E+++ E E+ KE+E ++ +ELE++ EE + E++ ++L +
Sbjct: 91 LLQKEENLDRKLELLEKREEELEK---KEKELEQKQQELEKKEEELE-ELIEEQLQELER 146
Query: 574 KKQEGKLLTGKQKEEARR--LEAMRNQ 598
++G EEA+ LE + +
Sbjct: 147 -------ISGLTAEEAKEILLEKVEEE 166
|
Length = 520 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-06
Identities = 56/306 (18%), Positives = 116/306 (37%), Gaps = 36/306 (11%)
Query: 259 VNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEP 318
V E + E E+ E T + + GG E E E + + +++ E + P
Sbjct: 635 VAEAEHTGERTGEEGERPTEAEGENGEESGGEA--------EQEGETETKGENESEGEIP 686
Query: 319 IIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQ-QSGDSSIVESD 377
++K + + + + ++ + E + ++ G D + ++G+ D
Sbjct: 687 ---AERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Query: 378 DFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQP 437
+ +GE K + E E R E + E + E E +G E +++
Sbjct: 744 E---GEGEAEG------KHEVETEGDRKETEHEGETEAEGKEDE-DEGEIQAGEDGEMKG 793
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
E + + EK+E + + + K++ AE++ + K + +
Sbjct: 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDE-KGV 852
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
G S G + + +E EE ++ EEEE +EEEE + E L +
Sbjct: 853 DGGGGSDGGDSE-------------EEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWP 899
Query: 558 EAKRRK 563
E ++++
Sbjct: 900 ETRQKQ 905
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 49/273 (17%), Positives = 112/273 (41%), Gaps = 25/273 (9%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +KE E+ E + EE+ LE++ EL +E + +++ ++ E
Sbjct: 235 KELRKELEELEEELSRLEEE-LEELQEEL------EEAEKEIE---------ELKSELEE 278
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E ++ + KE+ +E + + E ++ ++E E ++ + K + + ++
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Query: 514 VREMQ---EALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+ E + E L + E K E EE+L EE + L E R+ + + + +
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKK------ 624
L + K+E + L + + + RLE ++ + L E + + +
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458
Query: 625 KSAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657
+ + + ++ ++ EKE E L+
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLD 491
|
Length = 1163 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 456 KEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET---KKNDGKSKGPEKKMSK 512
K+ K +K +EK+K+++ AE +Q+ E E +K +K K K
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E + ER +EE + R +E E K+L++ +++ EE +R++++K++E+
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 573 KKKQ 576
+K++
Sbjct: 216 RKQK 219
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 9/63 (14%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVALN 917
DTPGHE +T + G+ CD+AIL++D G+ QT I + LL +++ +VA+N
Sbjct: 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIAT--LLGIKH--LVVAVN 168
Query: 918 KVD 920
K+D
Sbjct: 169 KMD 171
|
Length = 474 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 43/289 (14%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
+ K+K + + + E+ + L + ++E+++ E + + + E
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKE 274
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
++EE ++++ K KE++ + + +++ + + K+++ + K EK++ K+
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 514 VREM-----QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
E+ + K E ++ E+ E+L+++ E+ + +++ E + K K
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
E+ L+ K E + E + + E + + + + + +E+ + T++K
Sbjct: 395 EEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEK--- 451
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEK 677
+ + K + + + E + ET+ V+ E L +
Sbjct: 452 --------EELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLL 492
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 55/251 (21%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 42 LTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKN 101
LT E EEE K G + + G+E EE + +K G +
Sbjct: 159 LTAEEAEEEMKRRKKTANGFQLMMMKAAKNGPAAFGDEDEETE--------GEKGGGGRG 210
Query: 102 GGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFA 161
+ +G + D +D ++ SK K LA K + KKG K G
Sbjct: 211 KDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG--KRGGDDD 268
Query: 162 AAAFDAVDG---GSESEVIDDDHSVEESDDDDDDVV--EKSKKGGKKKSGTTGFSASAFD 216
A +D+ DG G E + I D + ++ +D + E K ++ + S
Sbjct: 269 ADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEES----- 323
Query: 217 LLDDEDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPI 276
+E+++ E + + K KK+ +S + +D D D +D
Sbjct: 324 ---EEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD------SGDDSDDSDIDGEDSVS 374
Query: 277 TFTDKKKKSNK 287
T KK+K K
Sbjct: 375 LVTAKKQKEPK 385
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 178 DDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASA--FDLLDDEDEDVREDKDEEDEP 235
DD ++ +D D+ K KK K+ DD DE +D D+E
Sbjct: 224 DDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGRE 283
Query: 236 VIFTDKKKKS-------KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKG 288
+ S + + +++D +E ++E +E KK K K
Sbjct: 284 EDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Query: 289 GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSS 337
+ + + D +++ DD + D D ED + T KK+K ++ V S
Sbjct: 344 LKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDS 392
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
KG +++ K+ + +E ++ +ER K+ E+ERL K +E++K+ EE E+QA+ ++++
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL-KAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E+ ++ ++K++ + K EA +L+A K E A + +
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA--KKKAEEAAKAAEEAKAKAEAAAA 192
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADA 683
KK A +A A + E+K K ++K E E +K ++ + A
Sbjct: 193 KKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAA 252
Query: 684 PKENEVEEEDD 694
++ DD
Sbjct: 253 ERKAAAAALDD 263
|
Length = 387 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 10/298 (3%)
Query: 380 KVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPE 439
K++ E V + K K + ++ E E+ E + ++++ + P+
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKK-KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
P + A EK +EKE+ K ++ + +E+EK+++ A + K K + K+
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ K + + +E + +E ++ E EE + + E
Sbjct: 190 PPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRS 249
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRP 618
+ KK + + +E ++R E L P + A +
Sbjct: 250 SSSLKKPDPSPSMASP---------ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK 300
Query: 619 KYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ + Q G + K ++++ + ++E + V GE +
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDG 358
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-05
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
E+E E+KA A A + + E +E KK + + +K + + +E Q+A+ K+
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE-EDKLLEEAEKEAQQAIKEAKKEA 586
Query: 529 ERKKREEEERLRKE---------EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
+ +E + + E RKRL + + E+ K KK+KEK++ LK E K
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK--KKQKEKQEELKVGDEVK 644
Query: 580 LLTGKQK 586
L+ QK
Sbjct: 645 YLSLGQK 651
|
Length = 782 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 36/142 (25%)
Query: 799 IMGHVDTGKTKLLDCI--------------RGTNV-----QEGEAGGITQQIGATYFPAE 839
I+ H+D GKT L + I GT V QE E GIT + AT +
Sbjct: 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQER-GITIESAATSCDWD 71
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
N R + +IDTPGH FT R + D A++V D + G++PQT
Sbjct: 72 NHR----------------INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE 115
Query: 900 ESLNLLKMRNTEFIVALNKVDR 921
++ +NK+DR
Sbjct: 116 TVWRQADRYGIPRLIFINKMDR 137
|
Length = 687 |
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 45/283 (15%)
Query: 353 PVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEE 412
P S V K + S V ++ + + +A+ K K K + EE
Sbjct: 79 PAPSVKKRHVKKKSKKKKSKQVSRK--ELLRLKKLARGKKGGKAKLLNASKDNYDLWGEE 136
Query: 413 DDLEK---ILAELGQGPAPQEEKVQV-QPPEPVAPPDAA--------------------D 448
+ + +L + Q K V P +A
Sbjct: 137 EPPDTPKWPKKDLAEHTLEQVAKKTVKTAPISLAANGKPVPAVEVPHAGASYNPSFEDHQ 196
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
E + EE ++E A KK+++ + E++K A A + +E +DG+ + ++
Sbjct: 197 ELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDE 256
Query: 509 KMSKQVREMQEALARRKEAE---------ERKKREEEERLRKEEEERKRLEELER----- 554
+ E + + + E++++E E ++E++ +K+L +L R
Sbjct: 257 SAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIA 316
Query: 555 ----QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLE 593
Q E+A+ RKKE+ KE+ KKK + + L GK K LE
Sbjct: 317 KEVAQKEKARARKKEQRKERGEKKKLKRRKL-GKHKYPEPPLE 358
|
This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 39/217 (17%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 453 EEEKEESAASKKKKKKKEKEKEK-KAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
+ E ++ +K+ E E+E ++ A ++++ + E ++N K++ +++
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
KQ +++Q RL+ E+R++LE + Q+ +A +++ + +L
Sbjct: 144 KQAQDLQ------------------TRLKTLAEQRRQLEA-QAQSLQASQKQLQASATQL 184
Query: 572 LKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ + KL + + ++EA+ L N A+ L A Q + Q
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQI-SQK 243
Query: 632 NGAVPLKEDSI---ESKEKEQEKQETLLEVDVGETEK 665
+ + + I E + + E + LE +V + E
Sbjct: 244 AQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
|
Length = 499 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 799 IMGHVDTGKTKLLD--CIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLK 855
I+ H D GKT + + + G +Q G G Q A E ++R + + ++
Sbjct: 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISI-TTSVMQ 74
Query: 856 VP--GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
P LV +DTPGHE F+ R D ++V+D G+E +T + + + ++R+T
Sbjct: 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP 134
Query: 912 FIVALNKVDR 921
+NK+DR
Sbjct: 135 IFTFMNKLDR 144
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 34/120 (28%)
Query: 884 AILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943
+L++D HG P +E L L+ F++ L K D+L
Sbjct: 85 VVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKL--------------------- 123
Query: 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003
++E L +I +L ++ S+ G GI +L L+ +W
Sbjct: 124 KKSELAKVLKKIKEELNL-------------FNILPPVILFSSKKGTGIDELRALIAEWL 170
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921
DTPGHE F+ R D A++V+D G+EPQT + + + ++R+T +NK+DR
Sbjct: 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDR 143
|
Length = 526 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-05
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 45/148 (30%)
Query: 862 IDTPG-HESFTNL-----RSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+DTPG H+ L ++ S L D+ + VVD + P L LK T I
Sbjct: 58 VDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI 117
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
+ LNK+D +K + L+ ++ +L E E
Sbjct: 118 LVLNKIDL---------------VKDKE---------ELLPLLEELSELMDFAE------ 147
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
IVP SA+ G+ + +LL ++ +
Sbjct: 148 -------IVPISALKGDNVDELLDVIAK 168
|
Length = 292 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 20/143 (13%), Positives = 56/143 (39%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++G E K S+ ++++ +KE+ K + A A ++ E K + E+
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
A EA + K+ ++K+ + +++ + K + K
Sbjct: 85 AAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRG 144
Query: 569 EKLLKKKQEGKLLTGKQKEEARR 591
+ +++ ++K++ ++
Sbjct: 145 KGGKGRRRRRGRRRRRKKKKKQK 167
|
Length = 746 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 437 PPEPVAPPDAA---DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEA 493
P A D ++ KK KKE+E++KK A +KQ+ +E
Sbjct: 30 EPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQR-AAEQ 88
Query: 494 VETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLE-EL 552
K+ + ++ + ++A K+AEE++K+ EE + ++ E + + E E
Sbjct: 89 ARQKELEQRAAAEK--------AAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Query: 553 ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
E++A+E +++ E+E + + + K K+K EA
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 511 SKQVREMQEAL-ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+++ E+ +L +E E+ K EE E L KE E K EELE + E+ +E+E +
Sbjct: 515 KEKLNELIASLEELERELEQ--KAEEAEALLKEAE--KLKEELEEKKEKL----QEEEDK 566
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHH 629
L + ++E + + K+EA + + L KG E A
Sbjct: 567 LLEEAEKEAQQAIKEAKKEADEIIK-ELRQLQKGGYASVKAHEL-----------IEARK 614
Query: 630 QANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEV 689
+ N A KE + K+K++EKQE E+ VG+ K L++ +K E+ P + E
Sbjct: 615 RLNKANEKKE---KKKKKQKEKQE---ELKVGDEVKY-----LSLGQKGEVLSIPDDKEA 663
Query: 690 EEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPR 741
+ + + V + D E+ + KK K+ P PR
Sbjct: 664 IVQA------------GIMKMKVPLS-DLEKIQKPKKKKKKK-PKTVKPKPR 701
|
Length = 782 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++ EE K+E+ KK+ + KE+ K A E K++ ++ + + ++
Sbjct: 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR 94
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQA----EEAK---- 560
KM ++ + + KE ++K +E+ EE ++ EELER + EEAK
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILL 154
Query: 561 ---RRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
+ E KL+K+ +E + KEEA +
Sbjct: 155 EEVEEEARHEAAKLIKEIEE------EAKEEADK 182
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 5/195 (2%)
Query: 407 RTAQEEDDLEKILAELGQGPAPQ-EEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
R ++ +K + + EE Q E E++ +E+++ A +K
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE--KKMSKQVREMQEALAR 523
+ + E++++++ A AAAE K++ ++ + K K KK +++ + E
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKA 185
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTG 583
+ EA KK+ E E E+ + E + E K +EK KKK K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKA--EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 584 KQKEEARRLEAMRNQ 598
K A+ E
Sbjct: 244 KAAAAAKAAERKAAA 258
|
Length = 387 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 6e-05
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L + E I LNK+D
Sbjct: 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKID 137
|
Length = 600 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 13/273 (4%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
E K S + K+ +K + A + GK E E ++ + K ++K
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP--- 124
Query: 514 VREMQEALARRKEAEE-RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+E + ++EA+E R +E+E+ K+ EE + EE +++ + + +K +K
Sbjct: 125 -KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKP 183
Query: 573 KKKQEGKLLTGKQKEEARRLEA-----MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
K++ KQ++ AR + D+E + + ++S+
Sbjct: 184 PNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSS 243
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
+ LK+ E +E+ + + + +P P+
Sbjct: 244 EISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPA---PPRVK 300
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEE 720
E D + K +V L K + D+++
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDD 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K ++++K+KE+ +E ++ ++ L +L + + K Q Q + A
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEK----ERLKAQEQQKQAEEAEKQA 127
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ ++E++ A+ ++KKK E K K AA AA + + K +A E K +
Sbjct: 128 QLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK----AAEEA 183
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
K ++ ++A A K A E+ K E E + + E++ EE ++ K + +
Sbjct: 184 KAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 568 KEKLLKKKQEGK 579
K K E K
Sbjct: 244 KAAAAAKAAERK 255
|
Length = 387 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 10/207 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND--GKSKGPEKKM 510
E++K+ +++ +E E + + D+ + +E K + + + E ++
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 511 SKQVREMQEALARRKEAE---ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK--E 565
+ E++E +R +E E E + + + + +E LE + E + R++ +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
Query: 566 KEKEKLLKKKQEGKL--LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E E+LLKK +E +L L + +E LE ++ + L +E
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQE 650
++ Q + E E+ E E
Sbjct: 481 ERE-LAQLQARLDSLERLQENLEGFSE 506
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 55/309 (17%), Positives = 105/309 (33%), Gaps = 35/309 (11%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKK-- 466
A+ E+ EK+ +G + +KV Q P+ AP + E EE+ S +
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 467 ------KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND---GKSKGPEKKMSKQVREM 517
K K + KK A AAA E +++ + ++ + + KM + V
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETV--- 1289
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR-------KKEKEKEK 570
+A+ R+ A +K + +++ AE K++ +K +
Sbjct: 1290 -KAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKP 1348
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
K+ G + + L M A GI +K+ R KK +
Sbjct: 1349 PAAAKKRGP---ATVQSGQKLLTEMLKPAEAIGIS---PEKKVRKMRASPFNKKSGSVLG 1402
Query: 631 ANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVE 690
E S +++ + ++ ++ V E+E
Sbjct: 1403 RAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDS-------ESESA 1455
Query: 691 EEDDDDDEE 699
++ D DD+E
Sbjct: 1456 DDSDFDDDE 1464
|
Length = 1465 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANATLK 855
+GHVD GKT L I T V ++ GA + I E+ R + N
Sbjct: 8 IGHVDHGKTTLTAAI--TKVL-------AKKGGAKAKKYDEIDKAPEEKARGITINTAH- 57
Query: 856 VPGLLV-----------IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
V +D PGH + G+ D AILVV G PQT E L L
Sbjct: 58 -----VEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL 112
Query: 905 LKMRNTE-FIVALNKVD 920
+ +V LNK D
Sbjct: 113 ARQVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 59/267 (22%), Positives = 118/267 (44%), Gaps = 5/267 (1%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKV 451
K+ + K++ R++ A++ + K AE+ + EK + P + A +
Sbjct: 5 KDLEDLKKEAARRAKEEARKRL-VAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRA 63
Query: 452 GEEEKEESAASKKKKKKKEKE--KEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKK 509
K ++AA K+K++ +E +E+KA A A A + K+ A+ +K +G + E++
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 510 MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+ + A + A ++KRE E + +EEEE + + + A AK + K+
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQ 183
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKK--KSA 627
K + + + +T ++K +A+ A + A + + + K +A
Sbjct: 184 KAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAA 243
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQET 654
+A A K E K++E+ KQE
Sbjct: 244 KAKAAAAARAKTKGAEGKKEEEPKQEE 270
|
Length = 430 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 44/244 (18%), Positives = 94/244 (38%), Gaps = 19/244 (7%)
Query: 386 VVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPD 445
+ K +K+ + + + LEK L L A E ++
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI---------ET 85
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
A D K ++ + A + +E+E+ ++ A AA ++ G++ + ++
Sbjct: 86 ADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA-LQRSGRNPPPALLVSPEDAQR 144
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL--ERQAEEAKRRK 563
+++ + A A R +A + ++ + E+ L L E++A++AK +
Sbjct: 145 -SVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E++K L + +L ++K E R R L I + + AA R
Sbjct: 204 LLEERKKTLAQLNS-ELSADQKKLEELRANESR---LKNEI--ASAEAAAAKAREAAAAA 257
Query: 624 KKSA 627
+ +A
Sbjct: 258 EAAA 261
|
Length = 420 |
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 23/202 (11%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ K + + + ++E E K S A++ K +E +
Sbjct: 70 KLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELL 129
Query: 486 KQQGKSEAVET-----------KKNDGKSKGPEK----------KMSKQVREMQEALARR 524
K+ V+ K D E ++SK++ E++
Sbjct: 130 KETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEE 189
Query: 525 KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E ++KREE + EEE RLE E E+ R + E+EKE+L KK +E KL
Sbjct: 190 LERALKEKREELLS-KLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE-KLRQEL 247
Query: 585 QKEEARRLEAMRNQFLAKGIPL 606
+++ + ++N+ + I L
Sbjct: 248 ERQAEAHEQKLKNELALQAIEL 269
|
Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 376 SDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQV 435
+ + V+ E++ + K+ + K S +EE E+ E + + E+
Sbjct: 10 AKELGVSSKELLEK----LKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAA 65
Query: 436 QPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVE 495
E A +AA EE E +AA++ + E E + A AAA ++ +
Sbjct: 66 AEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKG 125
Query: 496 TKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE 551
K K K + K+ + + RR+ R+K++++++ ++ + E
Sbjct: 126 PKPKKKKPKRKAARGGKRGKG-GKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180
|
Length = 746 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 64/325 (19%), Positives = 130/325 (40%), Gaps = 45/325 (13%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E A SK K++K+E E+ + ERT + + LE +L EL +
Sbjct: 162 EEAAGVSKYKERKEEAER-KLERTEENLERLEDLLEELEK-------------------- 200
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+ EK E A K ++ ++ K + ++ A ++ + E E ++ + +
Sbjct: 201 --------QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK 564
+++ +++ E ++ + K E + E EE + E ++ +EELE + + R +
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312
Query: 565 EKE-------------KEKLLKKKQEGKLLTGKQKEEARR---LEAMRNQFLAKGIPLPT 608
E E KEK+ K+E + +E + LE + + K L
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Query: 609 GDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+E + + ++ + + + IES E+ E+ LE E +++E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 669 GESLTVEEKPEIADAPKENEVEEED 693
E E+ + +E E + E+
Sbjct: 433 ELEELQTELEELNEELEELEEQLEE 457
|
Length = 1163 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-04
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK + K KE E++A ++ K EA KK E + + +E E
Sbjct: 26 KKIAEAKIKEAEEEAKRI-----LEEAKKEAEAIKK--------EALL--EAKE--EIHK 68
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKE--KEKEKLLKKKQEGKL 580
R E E+ + E + E+ ++ E L+R+ E ++R++E K++++L +K+QE +
Sbjct: 69 LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE- 127
Query: 581 LTGKQKEEARRLEAMRNQFL 600
K++EE L + Q L
Sbjct: 128 ---KKEEELEELIEEQLQEL 144
|
Length = 520 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
ES K+ ++ ++E +KK A A+ K + + ++++ + K E K + +
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
++ AE +K+ E+ ++ ++ + + L+ + +A + K+ K EKE K+ +
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
K K++ A L+ + Q A+ P + S P Y K
Sbjct: 327 QK----KREPVAEDLQKTKPQVEAQ--PTSLNEDAIDSSNPVYGLK 366
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 68/253 (26%)
Query: 799 IMGHVDTGKTKLLDCI---------RGTNVQEGEA----------GGITQQIGATYFPAE 839
I+ HVD GKT L + + G+ V +G GIT F E
Sbjct: 4 ILAHVDAGKTTLTESLLYTSGAIRELGS-VDKGTTRTDSMELERQRGITIFSAVASFQWE 62
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+ + + +IDTPGH F R + D AILV+ + G++ QT
Sbjct: 63 DTK----------------VNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR 106
Query: 900 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ---------------QNTDV 944
LL+ N I+ +NK+DR + + IK+ N
Sbjct: 107 ILFRLLRKLNIPTIIFVNKIDRA---GADLEK-VYQEIKEKLSPDIVPMQKVGLYPNICD 162
Query: 945 QNEFNMRLVQIVTQLKEQGM----------NTELYYKNKDRGETFNIVPT---SAISGEG 991
N + ++ V + ++ + EL + R + ++ P SA+ G G
Sbjct: 163 TNNIDDEQIETVAEGNDELLEKYLSGGPLEELELDNELSARIQKASLFPVYHGSALKGIG 222
Query: 992 IPDLLLLLVQWTQ 1004
I +LL +
Sbjct: 223 IDELLEGITNLFP 235
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 915
V DTPGHE +T G+ D+AI++VD G+ QT I S LL +R+ ++A
Sbjct: 108 VADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIAS--LLGIRH--VVLA 163
Query: 916 LNKVDRLYGW 925
+NK+D L +
Sbjct: 164 VNKMD-LVDY 172
|
Length = 632 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 799 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT-- 853
I H+D GKT + I G + GE AT E +ER + + AT
Sbjct: 15 ISAHIDAGKTTTTERILFYTGRIHKIGE----VHDGAATMDWMEQEKERGITITSAATTV 70
Query: 854 -LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
K + +IDTPGH FT R + D A+ V+D + G++PQ+
Sbjct: 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR 130
Query: 913 IVALNKVDR-----LYGWKTCRNAPIVKAIKQQ-NTDVQNEFNMRLVQIVTQLKEQGMNT 966
I +NK+D+ L + A+ Q ++ F ++ +V
Sbjct: 131 IAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFI-GVIDLVEM-------- 181
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKV 1026
+ Y+ N D+G + IP LL + ++ +VE + +E L K
Sbjct: 182 KAYFFNGDKGTKAIE--------KEIPSDLLEQAKELRENLVEAVAEFDE----ELMEKY 229
Query: 1027 IEGHGTTIDVV---LVNGVLHEGDQIVVCG 1053
+EG TI+ + + GVL+ V+CG
Sbjct: 230 LEGEELTIEEIKNAIRKGVLNCEFFPVLCG 259
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 801 GHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIG---ATYFPAENIRER---TRELKAN 851
GHVD GKT L + G E GI+ ++G A + T E
Sbjct: 11 GHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCP 70
Query: 852 ATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK 906
LL +D PGHE+ G+ L D A+LV+ +PQT E L L+
Sbjct: 71 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE 130
Query: 907 MRNTE-FIVALNKVD 920
+ + ++ NK+D
Sbjct: 131 IIGIKNIVIVQNKID 145
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 39/278 (14%), Positives = 75/278 (26%), Gaps = 42/278 (15%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
E QEE K++ K K ++ K ++ E+ ++ K +
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS-----SADKSKKASVVG 1196
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
N+ + E + DK D+ + + +K K
Sbjct: 1197 NSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSS----------------- 1239
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+S+ + S E++D+ D + K K SA
Sbjct: 1240 ----VKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPK-----RVSAVQYSPPPPSK 1290
Query: 225 VREDK----DEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTD 280
+ + + P KK+ K
Sbjct: 1291 RPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS----- 1345
Query: 281 KKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEP 318
+ S R R D + ++DDD + D E+++
Sbjct: 1346 ASQSSRLLRRPRKKKSD--SSSEDDDDSEVDDSEDEDD 1381
|
Length = 1388 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 15/267 (5%)
Query: 469 KEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEA 527
KE+ + A A D +G +EA T + G+ + + E A ++
Sbjct: 613 KEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGE 672
Query: 528 EERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK-------KQEGKL 580
E K E E E + ++ E E +A+EA + + + +E + + EG++
Sbjct: 673 TETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEI 732
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
TG++ EE + + K GD++ + + + K + G + ED
Sbjct: 733 ETGEEGEEVE--DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE--GEIQAGED 788
Query: 641 SIESKEKEQEKQETLLEVDVGETEKVE-EGESLTVEEKPEIADAPKENEVEEEDDDDDEE 699
E K E + + E + EK E EG+S T + E+ D E E+ E+ + ++
Sbjct: 789 -GEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQ 847
Query: 700 WDAKSWDDVNLNVKGAFDDEEADSEPE 726
D K D + G ++EE + E E
Sbjct: 848 -DEKGVDGGGGSDGGDSEEEEEEEEEE 873
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKA--AAAAAAEDKQQGKSEAVETKKNDGK 502
+ E EEK E + + ++E E+ +K A A +Q K E N
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL-- 314
Query: 503 SKGPEKKMSKQVREMQEALARRKEAEERKKR--EEEERLRKE-EEERKRLEELERQAEEA 559
E+++ + +++E ++ E E E+ E L++E E LEELE + EE
Sbjct: 315 ----ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ R +E E++ L + + L + +E + + E R +
Sbjct: 371 ESRLEELEEQ-LETLRSKVAQLELQIASLNNEIERLEAR------------LERLEDRRE 417
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
++ + LKE E +E E+E +E E++ E E E L E
Sbjct: 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 34/276 (12%)
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
+ + EEE EE ++ +++ +E E++ + A K + + E +E K+
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR------- 788
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKE 565
+ +QE L +E E +R + R+ E +R E LE++ EE + +E
Sbjct: 789 ---------QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839
Query: 566 KEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
E EKL + ++E + L + +E LE + + +E + + + +K+
Sbjct: 840 LE-EKLDELEEELEELEKELEELKEELEELEAEK-----------EELEDELKELEEEKE 887
Query: 626 SAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPK 685
+ E + ++E EK LE + E++E EE E +
Sbjct: 888 ELEEELREL----ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL 943
Query: 686 ENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEA 721
E E+E E + +EE ++ VNL +++ E
Sbjct: 944 ETELEREIERLEEE--IEALGPVNLRAIEEYEEVEE 977
|
Length = 1163 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 53/311 (17%), Positives = 114/311 (36%), Gaps = 36/311 (11%)
Query: 392 KNKKKKKEKEKPRSERTAQEE---DDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+ +KKEKE + + T ++ +DL+K L + QEE + + +
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEE----QEEVEEKEIAKEQRLK---- 1159
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+ + K +K K K+KEKK ++A + K+ + +D K K +K
Sbjct: 1160 -------SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+K + + + ++EE+ K ++ + + ++ ++
Sbjct: 1213 PDNK-----------KSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
L K EGK ++ A + G + +K+ + + S
Sbjct: 1262 SDDLSK--EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLA 1319
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
K+ + + K K + KQ + + ++ + E+ D E +
Sbjct: 1320 ALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED-----DDDSEVD 1374
Query: 689 VEEEDDDDDEE 699
E++DD+D+E
Sbjct: 1375 DSEDEDDEDDE 1385
|
Length = 1388 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 881 CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940
D+A+LVVD G +E + LK R +IV +NK+D + ++ ++++
Sbjct: 86 TDLALLVVDAGVGPGEYELELIEELKERKIPYIVVINKID------LGEESAELEKLEKK 139
Query: 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000
+ SA++GEGI +L ++
Sbjct: 140 ------------------------------------FGLPPIFVSALTGEGIDELKEAII 163
Query: 1001 Q-----WTQKTMVEKL 1011
+ + + T+V L
Sbjct: 164 ELLPEDFEEPTIVGDL 179
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 27/221 (12%), Positives = 73/221 (33%), Gaps = 11/221 (4%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ AEE K++ ++ K + + +E ++A E+K++ E+ + L+
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
K + + + + AK K+ K + +
Sbjct: 61 GMVKDTDDATESDIPKKKTKT---AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
I+ + + + + D+ + + ++ + +E + D E+E ++E +
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Query: 696 DDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736
++ D + +D+ K +A
Sbjct: 178 LEKLSDDDDFVWD--------EDDSEALRQARKDAKLTATA 210
|
Length = 509 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 58/274 (21%), Positives = 88/274 (32%), Gaps = 49/274 (17%)
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL----LKKKQEGK 579
+K+AEE K R E + R E E+ R ++ AE + K+ L KK +
Sbjct: 445 KKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQ 504
Query: 580 LLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKE 639
+ K + AA + K Q + + A QA A K+
Sbjct: 505 PIVIKAGARPDNSAVI-----------------AAREARKAQARARQAEKQAAAAADPKK 547
Query: 640 DSIE-----SKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
++ +K K+ +Q E EE + IA A K + ++
Sbjct: 548 AAVAAAIARAKAKKAAQQAA-------NAEAEEEVDPKKAAVAAAIARA-KAKKAAQQAA 599
Query: 695 DDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKA 754
+ E D V A A ++ PR AA A+A KA
Sbjct: 600 SAEPEEQVAEVDPKKAAVAAAI--ARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKA 657
Query: 755 IPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQA 788
RK + EPE PK+A
Sbjct: 658 -------------RKAAQQQANAEPEEAEDPKKA 678
|
Length = 695 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-04
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 800 MGHVDTGKTKLLDCI--------RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+GH GKT L + I R V++G + P E RER + +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTM-------DFMPEE--RERGISITSA 51
Query: 852 AT-LKVPGLLV--IDTPGHESFT-NLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLL 905
AT + G + IDTPGH FT + L D A++VV + G+EPQT
Sbjct: 52 ATTCEWKGHKINLIDTPGHVDFTGEVER---ALRVLDGAVVVVCAVGGVEPQTETVWRQA 108
Query: 906 KMRNTEFIVALNKVDR 921
+ I+ +NK+DR
Sbjct: 109 EKYGVPRIIFVNKMDR 124
|
Length = 668 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 74/409 (18%), Positives = 147/409 (35%), Gaps = 13/409 (3%)
Query: 186 SDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDEDVREDKDEEDEPVIFTDKKKKS 245
D + K + K K S + L ++ E + E +
Sbjct: 627 EGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKE------LLAEQ 680
Query: 246 KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDED 305
+ K S + K E K + + + NE+
Sbjct: 681 ELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELK 740
Query: 306 DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTK 365
E+K K++E+E KK++ + K +S + L +EE E V +
Sbjct: 741 LLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKE-EKLKA 799
Query: 366 QQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQ- 424
Q+ ++ E + E + ++K KE+E +EE LEK+ E +
Sbjct: 800 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 859
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
++ +Q + E+ +++ ES K+K++KKE E+E + +
Sbjct: 860 LEEEITKEELLQELLLK---EEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEK 916
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
+ + + A E PE+ + ++ E ++ ++E EER KR +
Sbjct: 917 ENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNV 976
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLE 593
+ E E +E + K E +KE+L ++K+E ++ + +
Sbjct: 977 NLMAIAEFEE--KEERYNKDELKKERLEEEKKELLREIIEETCQRFKEF 1023
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 10/226 (4%)
Query: 375 ESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQ 434
E ++ + +K E+ + + KE ++ E+ QEE+ E + + +
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 435 VQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
E + K E+E ++ ++ +K+ KE E K A E++ + E +
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Query: 495 ETKKND------GKSKGPEKKMSKQVREMQEAL----ARRKEAEERKKREEEERLRKEEE 544
E + + +S+ + E++ + E ++ E+ + K+EE
Sbjct: 370 EQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEE 429
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEAR 590
+ E E + + +EKE+ + K L K+ E+
Sbjct: 430 LKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLL 475
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER +E
Sbjct: 10 IIAHVDHGKTTLVDAL-------------LKQSG-TFREREEVAERVMDSNDLEKERGIT 55
Query: 848 -LKANATLKVPGLL--VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 904
L N + G ++DTPGH F R + D +L+VD G PQT L
Sbjct: 56 ILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 115
Query: 905 LKMRNTEFIVALNKVDR 921
+ IV +NK+DR
Sbjct: 116 ALALGLKPIVVINKIDR 132
|
Length = 603 |
| >gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E+ K ++EK K K+ + A +++ + ++ PE K +
Sbjct: 53 EDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPS 112
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEK-EKLLKK 574
+ + AE + ++E + LR E +E K LE+ + +R E + K LK+
Sbjct: 113 EPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKR 172
|
Length = 424 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER-KRLEELERQAEEAKRRKKEK 566
++ ++V + +E + ++R+EE + +KEE+++ +R +L + + E +R+ +EK
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
Query: 567 EKEKLLKK 574
E++K +K
Sbjct: 315 ERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090
GT + +G L +GD++V+ + +L H V G A
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAG---------ANA 51
Query: 1091 GIKITAQGLEHAIAG 1105
GI + GL+ G
Sbjct: 52 GIILAGIGLKDIKRG 66
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 38/142 (26%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 847
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 6 IIAHVDHGKTTLVD-------------ALLKQSG-TFRANEAVAERVMDSNDLERERGIT 51
Query: 848 -LKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT----IE 900
L N ++ G + +DTPGH F R G+ D +L+VD G PQT +
Sbjct: 52 ILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKK 111
Query: 901 SLNL-LKMRNTEFIVALNKVDR 921
+L L LK IV +NK+DR
Sbjct: 112 ALELGLKP-----IVVINKIDR 128
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 37/217 (17%), Positives = 89/217 (41%), Gaps = 18/217 (8%)
Query: 382 NKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPV 441
+ + + + + +E E+ E + E E++ ++ ++
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL------ 356
Query: 442 APPDAADEKVGEEEKEESAASKKKKKKKEKEKEK----KAAAAAAAEDKQQGKSEAVETK 497
+E E E++ SA ++ ++ E +E+ +A A + ++ K E +
Sbjct: 357 ------EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + + ++++E++ L + E E EE + EE R RL+ELER E
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER--E 468
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
A+ +++ + EK L + ++ ++ + A
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
|
Length = 1163 |
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 510 MSKQVREMQEALARRK---EAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR---- 562
+ +++ +M+E + R + E E E EE+L++EEEE + LE+ + EE RR
Sbjct: 10 LEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEE 69
Query: 563 --KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAK 602
E+E+E+L + E K +EE + EA Q +
Sbjct: 70 AAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQE 111
|
This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244 |
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 11/225 (4%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKE-KKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
DA + E++ E A ++ + K E E ++ A AE ++ K ET+
Sbjct: 222 DAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAW 281
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERK-----KREEEERLRKEEEERKRLEELERQAEE 558
K ++ ++Q + E + ++A+ + K E +R ER++ ELE Q
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA-----RRLEAMRNQFLAKGIPLPTGDKEA 613
+++ ++ K G Q E A EA R + A ++E
Sbjct: 342 YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQ 401
Query: 614 ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
+ + K A QA E E + E E + L E
Sbjct: 402 VEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEA 446
|
Length = 548 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-04
Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 27/268 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D +E + E+E+ E K+++ K K K K A+ + K E + K + KSK
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGK----ASKLRKPKLKKKEKKKKKSSADKSK 1190
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR-----EEEERLRKEEEERKRLEELERQAEEA 559
+ + + E + + +K +E++ +K + ++ ++ L+ + +
Sbjct: 1191 KASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ ++ ++ +EGK ++ A + G + +K+
Sbjct: 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPE 679
+ + S K+ + + K K + KQ + +
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ------------------ASASQSSRL 1352
Query: 680 IADAPKENEVEEEDDDDDEEWDAKSWDD 707
+ K+ +DDDD E D +D
Sbjct: 1353 LRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
|
Length = 1388 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 522 ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
RK + R+ EEEE++ K EE +R EE + + EE K+ ++E + KL ++Q KL
Sbjct: 257 VLRKVDKTRE--EEEEKILKAAEE-ERQEEAQEKKEEKKKEEREAKLAKLSPEEQR-KLE 312
Query: 582 TGKQKEEARR 591
++K++AR+
Sbjct: 313 EKERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 6e-04
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 478 AAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE----ERKKR 533
A+ + +D++ + A +G G K + +++ A RK E E+K+
Sbjct: 401 ASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRI 460
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL-------LTGKQK 586
E ER +E ER+R+E +ER+ E +R ++E+ + L++ + +L L +
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRL 520
Query: 587 EEARR----LEAMRNQFLAKGIP 605
E+ARR L+ M N A G P
Sbjct: 521 EKARRNSYFLKGMENGLSAGGGP 543
|
Length = 1021 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELKANA----- 852
I+ H+D GKT L D N+ G AG I++++ G + + +E+ R + NA
Sbjct: 24 IVAHIDHGKTTLSD-----NLLAG-AGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 853 --TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
+ L+ IDTPGH F +R D AI+VV + G+ PQT L
Sbjct: 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE 137
Query: 909 NTEFIVALNKVDRL 922
N + ++ +NKVDRL
Sbjct: 138 NVKPVLFINKVDRL 151
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 414 DLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEK 473
++ ++LA +G A + K A + ++ ++ AA KK +
Sbjct: 186 EIGRVLAAVGAANAKKAAKTPAAKSGA-KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKT 244
Query: 474 EKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKR 533
KAA A K+ K A KK K+ K +K + + A+ K+ +K
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ A+ KR K K+ +K+ KK+
Sbjct: 305 AGSKAKAT--------------AKAPKRGAKGKKAKKVTKKR 332
|
Length = 333 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVG----------------EEEKEESAASKKKKKKK 469
P P E V P A + G EE K + + K + K
Sbjct: 541 PTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKP 600
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK---- 525
E++++++ D+ + + + +G+ E + +++ + Q A R
Sbjct: 601 ERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAE 660
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
E+ + ++E+++ + E +R+R +E + +EAK
Sbjct: 661 VTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAK 695
|
Length = 1068 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 8e-04
Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 4/258 (1%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E + +E ++ KK E + K+ + E + + + +++
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEI 254
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ + + A+ K+ +EEE+ +K +EE +L E + +++ K E+ K
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Query: 573 KKKQEGKLLTGK-QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+K +E + K +KE + E + + E + + ++K +
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE---KPEIADAPKENE 688
K +S + K+E L + E E E EE K E + K E
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE 434
Query: 689 VEEEDDDDDEEWDAKSWD 706
EE + + + +
Sbjct: 435 ELEESLETKQGKLTEEKE 452
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 74/357 (20%), Positives = 128/357 (35%), Gaps = 67/357 (18%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL---------- 848
+ GHVD GK+ L+ + + +G+ + E R + ++
Sbjct: 122 VAGHVDHGKSTLVGVLVTGRLDDGDGA---TRSYLDVQKHEVERGLSADISLRVYGFDDG 178
Query: 849 ----------KANATLKVPG----LLVIDTPGHESF--TNLRSRGSGLCDIAILVVDIMH 892
+A V + +DT GHE + T +R D +LVV
Sbjct: 179 KVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD 238
Query: 893 GLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952
G+ T E L + IV + K+D + R +V+ I ++
Sbjct: 239 GVTKMTKEHLGIALAMELPVIVVVTKIDMV---PDDRFQGVVEEISAL---------LKR 286
Query: 953 V-QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
V +I +K+ K I TS+++GEG+ DLL K
Sbjct: 287 VGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL-DLLDEFFLLLPKRRR--W 343
Query: 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP- 1070
+ ++ + G GT + + +G+LH GD LL P
Sbjct: 344 DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGD---------------TVLLGPFKD 388
Query: 1071 --MKELRVKGTYLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGPDDDLEDVKE 1122
+E+ VK +HH ++ +A+ I I +G+E G+ V+ D + V+E
Sbjct: 389 GKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGM-VLSAGADPKAVRE 444
|
Length = 527 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 8e-04
Identities = 43/255 (16%), Positives = 109/255 (42%), Gaps = 6/255 (2%)
Query: 294 SAFDLLENEDEDDDEKKDKDEEDEPIIFT---DKKKKTKSSKKTVSSFSEVLLDEENVVE 350
S D ++ D++++E++D+ EDE I D +++SS + +S +E+ + E
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Query: 351 DAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQ 410
+ S T+++ D S V+ FK+++ + ++ +++ ++ E Q
Sbjct: 167 EEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQ 226
Query: 411 EEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKE 470
++ + K + G G ++++ E P D+K + E + K+ +
Sbjct: 227 DDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVK 286
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
KE + K +D+Q+ + E + K + + + + E+
Sbjct: 287 KEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDK---VKLDEPVLEGVDLESPKELSSFEK 343
Query: 531 KKREEEERLRKEEEE 545
++ + ++++ + E+E
Sbjct: 344 RQAKLKQQIEQLEKE 358
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 9e-04
Identities = 28/85 (32%), Positives = 56/85 (65%)
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
Q R +E +ER+++EE++RL +EE +R+ EE R+ EEA+R+++E+ +EK K K++
Sbjct: 34 QAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRK 93
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAK 602
+ +++EE R++ + + A+
Sbjct: 94 AEEEEKQEQEEQERIQKQKEEAEAR 118
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 0.001
Identities = 36/169 (21%), Positives = 51/169 (30%), Gaps = 9/169 (5%)
Query: 502 KSKGPEKK--MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
K G E K S E ++EAEE K E EE E EE + E E
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ + E + EA + K K+ K +
Sbjct: 85 AAEAAAAAEAAARPAEDE-----AARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAAR 139
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+ K + + + K+K EK EV + ET V E
Sbjct: 140 GGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR--EVVIPETITVAE 186
|
Length = 746 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 12/204 (5%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
+ EE +GK K+L+ +D+D E + + + KKK K KN
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
K + G D D D+ DS D +G+ S + S
Sbjct: 255 LDDDK---KGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLS------ 305
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+ E E +D EE ++++ + K K KK G D D D+
Sbjct: 306 -PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN--GLDKDDSDSGDDS 362
Query: 225 VREDKDEEDEPVIFTDKKKKSKKS 248
D D ED + T KK+K K
Sbjct: 363 DDSDIDGEDSVSLVTAKKQKEPKK 386
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
EE A ++ KKE E KK A A E+ + ++E ++
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL-----------------ERE 70
Query: 514 VREMQEALARRKEAEERKKREEEERL-RKEEEERKRLEELERQAEEAKRRKKEKEK---- 568
++E + L R ER+ + EE L RK E K+ E LE++ +E ++K ++
Sbjct: 71 LKERRNELQRL----ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126
Query: 569 --EKLLKKKQEGKLLTGKQKEEARR--LEAMRNQ 598
E + ++++E + ++G +EEA+ LE + +
Sbjct: 127 LEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 8/188 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E EK A + KK E K A AAA + + K A P+
Sbjct: 463 EREKAAREA--RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVI 520
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
RE ++A AR ++AE++ + + R + ++A + + +E+
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK--AKKAAQQAANAEAEEEVDPK 578
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQAN 632
K + K K+ A++ + + K+AA + K K A QAN
Sbjct: 579 KAAVAAAIARAKAKKAAQQAASAEPE----EQVAEVDPKKAAVAAAIARAKAKKAEQQAN 634
Query: 633 GAVPLKED 640
D
Sbjct: 635 AEPEEPVD 642
|
Length = 695 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
KK +K E ++A +++EAEE ++ E ++ K E ERK EELE + E+ K ++ K
Sbjct: 5 AKKRAKL--EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 567 EKEKLLKKKQE 577
E+E+ +K+QE
Sbjct: 63 EREEQARKEQE 73
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 465 KKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARR 524
K K++E+ +EK+ + + + ++ + + ++ +++ E++ + +
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 525 KEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
+ ER +RE +++RK+ +R+E LE++ EE K+R +E E++ +K L
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLEL 515
Query: 582 TGKQKE 587
+GK
Sbjct: 516 SGKGTP 521
|
Length = 652 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK+ K +EKE+E++ E K+ A E ++ E+K ++ RE + L
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERL---KALAEEEER--------ERKRKEERREGRAVLQ 77
Query: 523 RRKEAEERKKREEEERLRKEEEER----KRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
+ E E++++EE E +E E+ +R++E + + KR K++K +E++ + +E
Sbjct: 78 EQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEER 137
Query: 579 KLLTGKQKEEARRLEAMRNQFLAK 602
++KE R E ++ +
Sbjct: 138 IERKEEEKEREREEELKILEYQRE 161
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D E++ EE++ E+ ++K+KK +E ++ +++++ + E K + +
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQR- 160
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR----EEEERLRKEEEERKRLEELERQAEEAK 560
+K ++ E R++E E R +EE +EE + R + + + E +
Sbjct: 161 ---EKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKE 217
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEE-ARRLEAMRNQ 598
R+K+++E EK ++KQE + +Q EE RL+ R +
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK ++ +EA+ + K E+K REE ER +++E+ER+R E ER+AE A +
Sbjct: 575 SKLAKKREEAVEKAKREAEQKAREEREREKEKEKERER--EREREAERAAK 623
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 473 KEKKAAAAAAAEDKQQGKSEAVET-KKNDGKS-----KGPEKKMSKQVREMQEALARRKE 526
KE A A +KQ+ K + T ++N + + PE + + E+++ K
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPE--LHAENAEIKKTRTAEKN 341
Query: 527 AEE-RKKREEEERLRKEEE-ERKRLEELERQAEEAKRRKKEKE-KEKLLKKKQE 577
+ RKK ++R E E R+ +E A+ R+ + K+K L
Sbjct: 342 EAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASP 395
|
Length = 429 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 522 ARRKEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
RRKE E + +R E R E E ++L+ LERQAE+A+R K+ K + + L+
Sbjct: 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELEL---- 227
Query: 579 KLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLK 638
LL + +E LE ++ + KEA + + + + +
Sbjct: 228 ALLVLRLEELREELEELQEEL-----------KEAEEELEELTAELQELEEKLEE----L 272
Query: 639 EDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD--- 695
+ E+E E+ + L E ++E+ + + E + +E E + E+ +
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 696 DDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAE 745
D+ + ++ +K + EA+ E +E++S + + E
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 24/176 (13%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
+++ E+ + E + L++ + EL + +E++ + +E++ E
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL-----------EELEEELEEA 805
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
E+ A ++ + +++ + + E+ ++ + + E ++ + + +++ +++
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
E++ ++ + + E+EE + E L EL+ + E+ + R +E E +
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921
|
Length = 1163 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 8/210 (3%)
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
G Q+ + +K E+ EE + ++++ K+ EK+ A E
Sbjct: 58 GAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE--RLKAQE 115
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
++Q + + + + + +K + + ++ EA + AE K + E +K EE
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGI 604
K EE + +AE A +KK + + K +K + + E + E +
Sbjct: 176 AAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK------AEAEAKAKAEKKAEAAAEEKA 229
Query: 605 PLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
A +K K K+A +A A
Sbjct: 230 AAEKKKAAAKAKADKAAAAAKAAERKAAAA 259
|
Length = 387 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 45/208 (21%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
++K E+E+ R + +++ E+ +A L Q+E+ + D +E +E
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRA----QQEEAE----------DEREEL--DE 203
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
+ + + ++K+++KEKE+ ++ Q+ + E +E K+ ++ +
Sbjct: 204 LRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEER------LQEERAEE 257
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK 574
+E + ++ +E ++E E+ R + E +R ELE+Q EE + R+ + +E+L
Sbjct: 258 EAERERMLEKQAEDEELEQENAEKRRMKRLEHRR--ELEQQIEEKEERRAAEREEEL--- 312
Query: 575 KQEGKLLTGKQKEEARRLEAMRNQFLAK 602
+EG+ L ++ E R+E R + L +
Sbjct: 313 -EEGERLREEEAERQARIEEERQRLLKE 339
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 450 KVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEK 508
+ + EK + K+ K K +E + + ED + ++ E K+ + E+
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 509 KMSKQVREMQEALARR-KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ + EAL R E EE K+R EE + R E E LE L+ + EE +E
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL------RE 278
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
E+LL++ +E + + E LE + + + K KS
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGL-----------RALLEELEELLEKLKSL 327
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETL 655
+ E E+ E++ L
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNEL 355
|
Length = 908 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCI---RGT-----NVQEG--EAGGITQQIGATYFPAE 839
E LR+ I+ HVD GKT L+D + GT QE ++ + ++ G T A+
Sbjct: 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITIL-AK 59
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
N + + + N ++DTPGH F R + D +LVVD G PQT
Sbjct: 60 NTAIKWNDYRIN---------IVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR 110
Query: 900 ESLNLLKMRNTEFIVALNKVDR 921
+ IV +NKVDR
Sbjct: 111 FVTKKAFAYGLKPIVVINKVDR 132
|
Length = 607 |
| >gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA--AAAAAEDKQQGKSEAVETKKNDGK 502
D GEEE+ E+ ++KK ++K++KA A +K K +A K
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Query: 503 SKGPEKK 509
G KK
Sbjct: 449 PDGETKK 455
|
This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 443 PPDAADEKVGEEEKEESAASKKKKKKKE----------KEKEKKAAAAAAAEDKQQGKSE 492
P++ DE+ GE+E + KKKK+ K K+K+ AA + A + K
Sbjct: 65 EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEAL-ARRKEAEE-RKKREEEERLRKEEEERKRL- 549
+ K + +EA R KE E RKK + + R RKE+++ K L
Sbjct: 125 ERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELT 184
Query: 550 -EELERQAEEAKR-------RKKEKEKEKLLKKKQEGKLLTGKQKEE 588
EE +A+E +R R +E+E+E KKK + + L ++ E
Sbjct: 185 QEERLAEAKETERINLKSLERYEEQEEE---KKKAKIQALKKRRLYE 228
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR) | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 29/231 (12%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K +KKK+EKEK R + ++ +A PA + V + PE P D
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSLGTESDEDIA-----PAQMVDIVTEEMPENALPSDED 148
Query: 448 DEKVGEEEK-------------EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
D+ + + E+ K + + K EK A + K+ K E
Sbjct: 149 DKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKK 208
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL--------RKEEEER 546
E +K K K KK + + + AL + +E L E +
Sbjct: 209 EKEKERDKDK---KKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDE 265
Query: 547 KRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN 597
+ E E + K +KK++ KEK KKK++ + + ++N
Sbjct: 266 PKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQN 316
|
This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 3/165 (1%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSE--AVETKKNDGKSKGPEKKMSKQVREMQEA 520
+ + KE K E + KS VE ++ K + + + E +EA
Sbjct: 5 RVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEAR-KEEAKREAEEEAKAEAEEA 63
Query: 521 LARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL 580
A E E + + + E E R AE+ R E + KK K
Sbjct: 64 AAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
K K++ + +A R KG + +R K + +K
Sbjct: 124 KGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKP 168
|
Length = 746 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E Q ++ EK ++E+ A++ ++ +K E A E K + +
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA-EAKAKAEAEAEKKAK 145
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+ A ++ EE K ++AA + KKK E +K+ +A A A AE K + K+E + K K+K
Sbjct: 146 EEAKKQAEEEAKAKAAA-EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEE 536
+ +K EA A ERK E E
Sbjct: 205 AAAEAAAKA---EAEAAAAAAAEAERKADEAE 233
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 5/157 (3%)
Query: 502 KSKGPEKKMSKQVREMQEALA----RRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ +KK +Q E+Q+ A R K+ E+ + +E++ + EE ++ + ++QAE
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK-QKQAE 135
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR 617
EA + K K + + K EA++ A + EAA+K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Query: 618 PKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
KK A + A K+ + + K
Sbjct: 196 AAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
|
Length = 387 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 13/249 (5%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E KK+ + KE+ A + K E +K K + + + R
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
A + A ++KRE E + +EE+ + + + +A K+K + ++
Sbjct: 63 AAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEE 122
Query: 577 EGKLLTGKQKEEAR-RLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
E K A+ + A+ Q + ++E ++ K K +A +A A
Sbjct: 123 EKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAK---AKAAAAAKAKAAA 179
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
K+ + E+ E +E V E EK + K + A K+ + D
Sbjct: 180 LAKQKAAEAGEGTEE---------VTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDS 230
Query: 696 DDEEWDAKS 704
DE+ AK+
Sbjct: 231 GDEDAKAKA 239
|
Length = 430 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.003
Identities = 36/201 (17%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 334 TVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKN 393
VS + ++ VVE + D V+ ++ D ES + + + + +
Sbjct: 168 NVSDVDTDSISDKKVVE--ALREDNEKGVNFRRDMTDLKERESQE-DAKRAQQLKEELDK 224
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +K + +++ +D+ +K E+ Q QE K +P + +P + D++V E
Sbjct: 225 KQIDADKAQQKADFA---QDNADKQRDEVRQ--KQQEAKNLPKPADTSSPKE--DKQVAE 277
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+K E ++ + KK ++E KA A + KQ+ K+ E + + +++ + +++
Sbjct: 278 NQKREIEKAQIEIKKNDEEA-LKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAED 336
Query: 514 VREMQEALARRKEAEERKKRE 534
+++ + + + + +
Sbjct: 337 LQKTKPQVEAQPTSLNEDAID 357
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
K+ + K+ K+KK + ++ ++E + + + +K +K+ + A+
Sbjct: 21 KRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAK 80
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++EAE+ K++EE E E++R E +++A EAK K+EK+
Sbjct: 81 KEEAEKEKEKEERFMKALAEAEKERAELEKKKA-EAKLMKEEKK 123
|
This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 502 KSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK KK+ K V + ++ +R+E ++ KK++ +KEEEE + E+ E + EE +
Sbjct: 404 GSKKATKKIKKIVEKAEK---KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 562 -RKKEKEKEKLLKKKQ 576
++EKE+E+ KKKQ
Sbjct: 461 EAEEEKEEEEEKKKKQ 476
|
Length = 482 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVV--DIMHGLEPQTIESLNLLK-MRNTEFIVALN 917
++D PGH F G+ D A+LVV D G+ PQT E + L + + + IVA+N
Sbjct: 88 IVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147
Query: 918 KVD 920
K+D
Sbjct: 148 KMD 150
|
Length = 425 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 2/147 (1%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+G P A A + ++ +A + K + AAAAA A
Sbjct: 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA 118
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQ-VREMQEALARRKEAEERKKREEEERLRKE 542
+ ++ + +G +K + + EA A E E ++R+E R R +
Sbjct: 119 ASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRR-RGD 177
Query: 543 EEERKRLEELERQAEEAKRRKKEKEKE 569
E+R+ E + +R + +++
Sbjct: 178 REDRQAEAERGERGRREERGRDGDDRD 204
|
Length = 672 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 40/234 (17%), Positives = 96/234 (41%), Gaps = 20/234 (8%)
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTA-QEEDDL 415
G V T+ + + V ++ K + + A + ++++ +++ SE Q+E
Sbjct: 27 GSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLERLARREERRDERFSEALERQKEFKP 86
Query: 416 EKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK------------ 463
L + +E + + EE +E +K
Sbjct: 87 TSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEE 146
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
+K++KE E E++ + ++ G+ + K + + ++ + +
Sbjct: 147 CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLK 206
Query: 524 RKEA-------EERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+K+ E +KKREE ++ +EEE+R++ EE +R++ E + +++ KE+ +
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIE 260
|
Length = 431 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.004
Identities = 118/580 (20%), Positives = 244/580 (42%), Gaps = 42/580 (7%)
Query: 17 VAQGGGKSKKKAVVIDDDEYSIGTELTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSK 76
A+ ++ +++ + EE +++ K ++ KK ++ +AE+D K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 77 GEEGEENDAEAIVFTGKKKSKGKKNGGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKY 136
+E ++ A KKK+ K K A E + A++ D++ K + K
Sbjct: 1407 ADELKKAAAA------KKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 137 VSLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESEVIDDDHSVEESDDDDDDVVEK 196
A K K +E K K + A A +A E++ D+ D +K
Sbjct: 1459 AEEAKK-KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 197 SKKGGKKKSGTTGFSASAFDLLDDEDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFD 256
+++ K A D +E + D+ ++ E + ++KKK++++ K +
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
Query: 257 LLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEED 316
+ + + ++ K+ ++ E + +++K K + + ++ E+ E++ K E
Sbjct: 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
Query: 317 EPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVES 376
++KKK + KK +EEN ++ A + A + K+++ ++ E
Sbjct: 1638 LKKKEAEEKKKAEELKKA---------EEENKIKAA---EEAKKAEEDKKKAEEAKKAEE 1685
Query: 377 DDFK----VNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK 432
D+ K + K A+ ++ KKK+ +EK ++E + E++ KI AE + A +++K
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE-NKIKAEEAKKEAEEDKK 1744
Query: 433 VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSE 492
A + K EEEK++ A KK+++KK +E K+ A E ++ +
Sbjct: 1745 ------------KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE- 551
+E K + + +E + KE E+ +E + + EE E+
Sbjct: 1793 RMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKH 1852
Query: 552 -LERQAEEAKRRKKEKE--KEKLLKKKQEGKLLTGKQKEE 588
+ E + KE + KEK LK+ E ++ + E+
Sbjct: 1853 KFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK 1892
|
Length = 2084 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 65/352 (18%), Positives = 141/352 (40%), Gaps = 30/352 (8%)
Query: 365 KQQSGDSSIVESDDFKVNKGEVVAQTSKNKK-----KKKEKEKPRSERTAQEED--DLEK 417
K+ IV D V G V+ S +++E E+ + EE +LEK
Sbjct: 639 KKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
Query: 418 ILAEL---GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
LAEL + + E+++ + E A + + E E ++ + ++ E
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
Query: 475 KKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKRE 534
+A E ++ + E E + + + +++ ++++ ++EAL + E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 535 EEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
+ E +R+ ER+ E+ + + +E ++ + L + +E +E
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEE 870
Query: 595 MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
+ ++ A + ++ A R + + + + L+ + E +EK + +
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 655 L--LEVDVGE-TEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAK 703
L LEV + E++ E SLT+EE +E + +DD+EE +
Sbjct: 931 LEGLEVRIDNLQERLSEEYSLTLEEAE---------ALENKIEDDEEEARRR 973
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 27/136 (19%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
+++++ +E+ +E++ +++ ++EA E ++ +KK+ +++ E E
Sbjct: 86 RRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK-------QKKLREEIDEFNEERI 138
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLT 582
RKE E+ ++REEE ++ + + E+ EE ++ +KE+E +L +++
Sbjct: 139 ERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQE------ 192
Query: 583 GKQKEEARRLEAMRNQ 598
+ ++E L+ +R
Sbjct: 193 -EAEDEREELDELRAD 207
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
EK E +EE +K+ ++ E+E + A +++ + K E +E + + EK
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK-EK 551
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+Q++E L R ++ +E E LR ++ LEEL + +E K++ KE E+
Sbjct: 552 LQLQQLKEELRQLEDR----LQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
++ L + + E E L K ++ + + + K +
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVD 659
+ + E+ + +EK +E ++ E++
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELE 698
|
Length = 908 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 6/173 (3%)
Query: 423 GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAA 482
G A A AA + + E +AA + A AA+A
Sbjct: 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA 121
Query: 483 AEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE----AEERKKREEEER 538
E Q + G ++ + + E + A R E E R++ + E+
Sbjct: 122 PEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED- 180
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
R+ E ER E + + R + +E+ ++++ G+ G ++ RR
Sbjct: 181 -RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
Length = 672 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E+ + + ++ K+KEKE E+ + E +E + E K +
Sbjct: 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK-------EVKELE 234
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEE----EERKRLEELERQAEEAKRRKKEKE- 567
+++E E L + E+ E KR+ EE++R+ E E +K +EELE + +E K K++ E
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Query: 568 -------KEKLLKKKQEGKLLTGKQKEEARRLEA 594
E+ L + +E + + +EE +E
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
Length = 880 |
| >gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
K E + K AE +REEEE L++E EER E+ ER E+A+ R+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 572 LKKKQEGKLLTGKQKEEAR 590
+ + E + +++EEAR
Sbjct: 431 FEDEDELEEAQPEEEEEAR 449
|
Length = 449 |
| >gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ K + E +T++ + GP + K R ++EAL RR A R KR E L +E
Sbjct: 121 KKKGLKEIEEEKTRRAGYRRTGPPSNLDK-KRTLREALKRRI-ALGRPKRRELRELEEEL 178
Query: 544 EERKRLEELERQAEEAKRRKK 564
E + LEE+ER + +
Sbjct: 179 EALEALEEIERLRALRAKIDR 199
|
Length = 401 |
| >gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 46/200 (23%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKIL-AELGQGPAPQEEKVQVQPPEPVAPPDAADEK 450
+ +++K+E+ K R ++ +E E +E + + + + P A + K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 451 VGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKM 510
V + E++ K KKKK+K+K E +++ E E K + + K K
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKA 128
Query: 511 SKQV---------REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
+ + +++AL R+++ +++ K+E +ER K E+ K+ E +++ E K+
Sbjct: 129 LAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEK--KKAERQKKREENLKK 186
Query: 562 RKKEKEKEKLLKKKQEGKLL 581
RK +K+ +K K K++G++L
Sbjct: 187 RKDDKKNKKKKKAKKKGRIL 206
|
The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1324 | |||
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 100.0 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 100.0 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 100.0 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 100.0 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 100.0 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.97 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.97 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.97 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.97 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.97 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.97 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.97 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.97 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.97 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.97 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.97 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.97 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.97 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.97 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.97 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.97 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.96 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.96 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.96 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.96 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.96 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.96 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.95 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.95 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.95 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.95 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.95 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.94 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.94 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.94 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.93 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.93 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.93 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.93 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.92 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.92 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.92 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.92 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.92 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.92 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.91 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.91 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.91 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.9 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.9 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.89 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.89 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.89 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.88 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.88 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.88 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.87 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.86 | |
| PF11987 | 108 | IF-2: Translation-initiation factor 2; InterPro: I | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.86 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.86 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.86 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.85 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.85 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.85 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 99.85 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 99.84 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.84 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.84 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.84 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.82 | |
| cd03703 | 110 | aeIF5B_II aeIF5B_II: This family represents the do | 99.82 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.81 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.79 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.79 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.79 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.79 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.78 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.78 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.76 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.76 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.76 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.75 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.74 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.74 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.74 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.74 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.73 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.73 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.73 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.73 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.73 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.72 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.72 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.72 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.72 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.72 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.72 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.72 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.72 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.72 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.72 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.72 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.71 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.71 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.71 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.71 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.71 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.71 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.71 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.71 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.71 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.71 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.71 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.7 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.7 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.7 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.7 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.7 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.7 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.7 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.7 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.7 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.69 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.69 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.69 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.69 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.69 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.69 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.69 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.69 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.69 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.69 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.69 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.68 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.68 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.68 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.68 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.68 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.68 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.68 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.68 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.68 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.68 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.68 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.67 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.67 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.67 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.67 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.67 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.67 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.67 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.67 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.67 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.67 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.67 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.67 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.67 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.67 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.67 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.66 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.66 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.66 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.66 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.66 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.66 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.66 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.66 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.66 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.66 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.66 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.65 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.65 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.65 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.65 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.65 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.65 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.65 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.65 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.65 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.65 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.64 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.64 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.64 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.64 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.64 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.64 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.64 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.64 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.64 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.64 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.63 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.63 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.63 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.63 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.63 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.63 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.63 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.62 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 99.62 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.62 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.62 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.62 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.61 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.61 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.61 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.61 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.6 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.6 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.6 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.6 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.6 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.6 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.6 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.6 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.59 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.59 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.59 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.59 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.58 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.58 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.58 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.58 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.58 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.57 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.56 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.56 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.56 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.55 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.55 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.55 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.54 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.54 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.54 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.52 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.51 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.5 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.49 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.48 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.47 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.46 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.45 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.44 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.44 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.43 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.43 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.43 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.43 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.41 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.41 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.39 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.38 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.37 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.36 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.34 | |
| PF14578 | 81 | GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 | 99.34 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.33 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.33 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.3 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.3 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 99.29 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.28 | |
| PRK13768 | 253 | GTPase; Provisional | 99.27 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.27 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.26 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.25 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.24 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.24 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.24 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.24 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.23 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.23 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.23 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.21 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.2 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.2 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.18 | |
| PTZ00099 | 176 | rab6; Provisional | 99.18 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.17 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.14 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.13 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.13 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.08 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.06 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.06 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 99.04 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.03 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.01 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.01 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.0 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.97 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.96 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.92 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.9 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.89 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.89 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.87 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.86 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.84 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.83 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.82 | |
| cd03702 | 95 | IF2_mtIF2_II This family represents the domain II | 98.81 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 98.8 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.79 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.79 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.79 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.73 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.72 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.7 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.69 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.68 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.6 | |
| cd03701 | 95 | IF2_IF5B_II IF2_IF5B_II: This family represents th | 98.6 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.57 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.53 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.52 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.52 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.51 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.48 | |
| KOG0052 | 391 | consensus Translation elongation factor EF-1 alpha | 98.46 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.4 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.37 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.34 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.34 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 98.33 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.31 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.3 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.2 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.18 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.17 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.17 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.14 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.11 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.1 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.1 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 98.09 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.06 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.05 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.05 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.04 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.03 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.02 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.02 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.02 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.01 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 97.98 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.98 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.96 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.96 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.95 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.95 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.95 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.95 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 97.94 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.93 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.84 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.81 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.8 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.8 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.8 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.79 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.78 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.77 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.76 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.72 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 97.72 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 97.71 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.71 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.71 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.69 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.68 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.68 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.67 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.67 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.67 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.66 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.66 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 97.65 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.64 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.64 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.62 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.62 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.61 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.59 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 97.58 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.54 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 97.51 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.5 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.49 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.45 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.45 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.45 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.44 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.41 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.36 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.35 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 97.3 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.28 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.27 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 97.26 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.25 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 97.22 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.21 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 97.18 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.17 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 97.14 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.11 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.08 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.07 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.07 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.06 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.06 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.05 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.01 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 96.99 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 96.99 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 96.91 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.9 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.87 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 96.86 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 96.84 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.78 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.78 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 96.77 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 96.75 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.69 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.64 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.52 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 96.52 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.47 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 96.42 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.36 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 96.35 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.31 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 96.27 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 96.27 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 96.26 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.2 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 96.19 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.15 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.1 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 96.1 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 96.09 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 96.07 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.07 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 96.05 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.02 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 95.97 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 95.94 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 95.91 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 95.77 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.74 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 95.7 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 95.69 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 95.68 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 95.64 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.58 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.56 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 95.53 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 95.48 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 95.43 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 95.41 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.4 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 95.4 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 95.34 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 95.27 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 95.21 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 95.11 | |
| cd03688 | 113 | eIF2_gamma_II eIF2_gamma_II: this subfamily repres | 95.07 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 95.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.03 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.02 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 94.88 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 94.86 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 94.8 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 94.71 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 94.7 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 94.59 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.59 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 94.52 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.49 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 94.47 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 94.42 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 94.38 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.36 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 94.29 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 94.25 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 94.21 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 94.21 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 94.18 | |
| PF05729 | 166 | NACHT: NACHT domain | 94.16 |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-173 Score=1502.78 Aligned_cols=802 Identities=69% Similarity=1.034 Sum_probs=672.0
Q ss_pred hccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000735 497 KKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576 (1324)
Q Consensus 497 ~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~~ee~~~reEEe~~~~eEEer~~~ee~er~~~e~~~~k~~~~kek~~~~k~ 576 (1324)
.++....++..++.+..++++|+.++++++++|+++|++||+.|+++|++++++++++++++.+++++++++++++++++
T Consensus 199 ekk~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~Ka 278 (1064)
T KOG1144|consen 199 EKKEAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKA 278 (1064)
T ss_pred cccchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556667778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHhcC--CCCCCCCCCcccCCcccccccccccccCCCCCCCcccchhhhhhHHhhhhh
Q 000735 577 EGKLLTGKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654 (1324)
Q Consensus 577 e~k~~~~k~~~e~~~~~~~~~~~~~~g--~~~~~~~~~~~~kk~~~~~kkk~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 654 (1324)
+|+|||++|+++++++++++.+|+++| +.++..+ ...++||+|.+++++..+.....+++......++.+.. +
T Consensus 279 eGklLTakQK~~~a~aea~l~~ll~sg~~~~va~kd-g~~kKrpiY~nKKk~~rq~~~~~~s~~~~~~~~~~e~~-~--- 353 (1064)
T KOG1144|consen 279 EGKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKD-GDSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKENH-A--- 353 (1064)
T ss_pred hcccchHhhHHHHHHHHHHHHHHHhcCCCCCCCccc-CCcccCcccccccccccccccchhhhhhcccCchhhhc-c---
Confidence 999999999999999999999999997 4444333 34899999999998755443332221110000000000 0
Q ss_pred hhcccccccccccccccccccCCcc-ccCCCCCccccCCCCCcchhhhhccccccccccCCCCCCcccCCCCCchhhhhh
Q 000735 655 LLEVDVGETEKVEEGESLTVEEKPE-IADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEI 733 (1324)
Q Consensus 655 ~~~~~~~e~~~~~~~~~~~~~e~~~-~~~~~~e~~~eee~ed~~d~we~~s~dd~~~~~~~~~~dEE~e~e~~~~~k~e~ 733 (1324)
.++.+.+.+.++..+.+.+.+... +.+.+++.. ...+.|++.. +...+.+++|.++. ...+..++.
T Consensus 354 -~~~~~~d~~~~~~~e~~~~~e~e~~~~dv~~e~g------~~e~~~~~k~----~~~~~~d~dd~ee~--~~e~~~~e~ 420 (1064)
T KOG1144|consen 354 -GDVGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEG------EEEDDWDAKV----DLAIDGDDDDDEEE--LQEEVDKEL 420 (1064)
T ss_pred -CCCCCCcchhhccccccCCcccccCCCChhhhhc------ccchhhhccc----cccccccccchhhh--hchhhhhcc
Confidence 011111222222222222222221 111111111 1122366532 12222222222110 011111111
Q ss_pred cccCCCCCcccCCchhhccccCCCCCCCchhhhhhccchhhhcCCCcccCCCCccccCCCCCEEEEEcCCCCCHHHHHHH
Q 000735 734 KSAIPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDC 813 (1324)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~piV~IlGhvdaGKTTLLd~ 813 (1324)
+....+......+...+..+.. .+.++...+.++. +............++.++|+||||||||||+|||.||++
T Consensus 421 ~e~~~~~e~s~~~~~~a~~k~~----~~~~d~~t~~~~~--~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ 494 (1064)
T KOG1144|consen 421 KEAEEEEEDSEKPTEDAAVKAI----SKVEDAATRTKRA--KIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDK 494 (1064)
T ss_pred cccccchhhccccccccccccc----cccchhhhhhhhc--chhccCchhhccccchhcCCceEEEeecccccchHHHHH
Confidence 0000000000000000000000 0111111111111 122233334455677899999999999999999999999
Q ss_pred HHcCcccccccCceeeeeeeeEeccccccchhhhcccccc--ccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccc
Q 000735 814 IRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 814 L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~--~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~ 891 (1324)
||++||+.|++|||||+||++|||..+|+.++..+..... ++.|+|++||||||++|+|+|+||+++||++|||||+|
T Consensus 495 ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdIm 574 (1064)
T KOG1144|consen 495 IRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIM 574 (1064)
T ss_pred hhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehh
Confidence 9999999999999999999999999999999988877654 88999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc
Q 000735 892 HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 971 (1324)
Q Consensus 892 ~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~ 971 (1324)
||+.|||+++|++|+.+++||||++|||||+|+|..|++++|..+|..|..+++++|..|+..|+.+|+++|||+.+||.
T Consensus 575 hGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~Lyyk 654 (1064)
T KOG1144|consen 575 HGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYK 654 (1064)
T ss_pred ccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEE
Q 000735 972 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV 1051 (1324)
Q Consensus 972 ~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv 1051 (1324)
|.+++.+|++|||||++|+||++|+.+|++|+|.+|..+|.|.+.++|+||+|+.++|+|+||+++|.||+||.||+|||
T Consensus 655 Nk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~Ivv 734 (1064)
T KOG1144|consen 655 NKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVV 734 (1064)
T ss_pred cccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeeccccccccCCCceEEeCCCccHHHHHHHHHHHHHHH
Q 000735 1052 CGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSV 1131 (1324)
Q Consensus 1052 ~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gL~~~~aG~~l~v~~~~~~~~~~~~~~~~~~~~~ 1131 (1324)
||++|||+|+||+||+|+||+++||+|.|+||++|++|+||+|++.||+++++|++|+|+.++++++.+++.+|.+|.++
T Consensus 735 cG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~ 814 (1064)
T KOG1144|consen 735 CGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESV 814 (1064)
T ss_pred cCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCceEEEeCCcccHHHHHHHhccCCceeeEEEeeeCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHH
Q 000735 1132 MSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEAREL 1211 (1324)
Q Consensus 1132 ~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~ 1211 (1324)
|++|++++.||||||+|||||||||+||++ ++|||.++||||||++|||.|++|+++.+.||+||||+|+|..+|+.+
T Consensus 815 l~~Id~sgeGv~vqastlgslealleflk~--~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~ 892 (1064)
T KOG1144|consen 815 LSRIDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREAREL 892 (1064)
T ss_pred HHHhhccCCceEEEecccchHHHHHHHHhh--cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccccCCCCeEEEEEEeeceeecCCcEEec
Q 000735 1212 AEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIP 1291 (1324)
Q Consensus 1212 A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~a~~p~~~~i~~~~vf~~~~~~iaG~~V~~G~l~~~~~~~v~ 1291 (1324)
|+++||+||+++|||||||.|+.|+..+++.++++..+.|||||+|+|||+||||+++|+|+||.|..|+|++||||||+
T Consensus 893 Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~ 972 (1064)
T KOG1144|consen 893 ADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVP 972 (1064)
T ss_pred HHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1292 QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1292 ~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
..++|++|+|+||++||++|+.|++||+|||+|
T Consensus 973 ~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKi 1005 (1064)
T KOG1144|consen 973 KREFIDLGRVASIENNHKPVDYAKKGQEVAIKI 1005 (1064)
T ss_pred ccceeeeeeeeeecccCcccchhhcCCeEEEEE
Confidence 999999999999999999999999999999997
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-95 Score=890.14 Aligned_cols=527 Identities=42% Similarity=0.733 Sum_probs=476.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhc--cccccccCCCEEEEeCCCCc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v--~~~~~~~~~~I~IIDTPGHe 868 (1324)
.+|+|+|+||||+||||||||++|+++++..++.+|+|+++|++++++..+...+... .....+..++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4799999999999999999999999999999999999999999999876543211111 11122344579999999999
Q ss_pred chhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+..|.+++..+...+...|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998888999999988888888889
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhh--hcccccceeEEEEEE
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 1026 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l--~~~~~~~~~VlEvk~ 1026 (1324)
...+..+..+|.++|+..++|+...+|++.+++|||||+||+||++|+.+|..+.+..|...+ .+..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 888899999999999999999988899999999999999999999999999988888776554 346789999999999
Q ss_pred EcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecc-eeecccccccccceeeeccccccccCC
Q 000735 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1324)
Q Consensus 1027 i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~-~~~~~k~v~aa~gv~i~~~gL~~~~aG 1105 (1324)
+.|+|+|++++|.+|+|+.||+|++++++||++++||+|++|.|++++|+.+ .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999775 478899999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcccHHHHHHHhccCCceeeEEEeeeCccccchHHHHH
Q 000735 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1324)
Q Consensus 1106 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~v~~~DV~~A~ 1185 (1324)
+.|++++ ++++..+++.++.++..+ .+.....||||||||+||||||+++|.. ..|||++++|||||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9997774 445666666666655443 3556778999999999999999999997 5699999999999999999999
Q ss_pred hhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccc
Q 000735 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1324)
Q Consensus 1186 ~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~a~~p~~~~i~~~~vf 1265 (1324)
+|.++++.||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++..++.....+|||.++|++++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99998999999999999999999999999999999999999999999999999999988877788899999999999999
Q ss_pred cCCCCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1266 ~~~~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+.++|+||||+|++|+|++|++||.+++.+| |+|.||+|++++|.+|++|+||||+|
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i 532 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAI 532 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEE
Confidence 9999999999999999999999876566443 99999999999999999999999986
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-95 Score=848.14 Aligned_cols=476 Identities=38% Similarity=0.502 Sum_probs=415.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
.+|+|+||||||||||||||||+||.+++..+++||||||||+|+++++.. ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999997632 2367999999999999
Q ss_pred hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
++||.||++.||++||||++++|++|||+++|+|++.+++||||++||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCc
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~ 1030 (1324)
...+..+|.++||+++.| ++.+.|||+||+||+||++||..|+.+.+.. ..+..+..+..|+|+|++..+|+
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEVL-ELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-hhhcCCCCcceEEEEEEEeccCC
Confidence 245667888999998855 6789999999999999999999998766543 44556678899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeeccccccccCCCceEE
Q 000735 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110 (1324)
Q Consensus 1031 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gL~~~~aG~~l~v 1110 (1324)
|++++++|++|+|+.||.|++|+.+|++.+.++.++.|-+....+....+...+++++|.+..++++++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999988887777766677778888888889999999988888888877
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcccHHHHHHHhc---cCCceeeEEEeeeCccccchHHHHH
Q 000735 1111 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1185 (1324)
Q Consensus 1111 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~---~~~~~i~v~~~~vG~v~~~DV~~A~ 1185 (1324)
.. ...........++..+..+..+.+....||||||||+||||||..+|. .+++++.|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 65 222222333333333333333334556899999999999999998874 5778899999999999999999999
Q ss_pred hhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccc
Q 000735 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1324)
Q Consensus 1186 ~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~a~~p~~~~i~~~~vf 1265 (1324)
++ +|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++++..++......+|+.+.+++
T Consensus 356 as------~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~---- 425 (509)
T COG0532 356 AS------DAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP---- 425 (509)
T ss_pred hc------CCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccceEEEEEEEcC----
Confidence 84 69999999999999999999999999999999999999999999999998877654344565443333
Q ss_pred cCCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1266 NKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1266 ~~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+.|.|+||+|++|+|++|+++|+ |++.+||.|+|.||+|++++|.+|++|+||||+|
T Consensus 426 --k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i 483 (509)
T COG0532 426 --KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAI 483 (509)
T ss_pred --CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEe
Confidence 58999999999999999999997 6999999999999999999999999999999987
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-94 Score=914.55 Aligned_cols=521 Identities=40% Similarity=0.689 Sum_probs=481.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccc--cccccCCCEEEEeCCCCcchh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~--~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
-+..+|++| |||||++||+++++.+++||||||||+++++++.+...+..+.. ...++.++|+|||||||..|.
T Consensus 465 ~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~ 540 (1049)
T PRK14845 465 FIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT 540 (1049)
T ss_pred ceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH
Confidence 344688888 99999999999999999999999999999999876654443321 234567899999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++.++++.||++|||||+++|+++||.+++.++...++|+|||+||+|++++|..+++.+|..++..|...++.++..+
T Consensus 541 ~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~ 620 (1049)
T PRK14845 541 SLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK 620 (1049)
T ss_pred HHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhh--cccccceeEEEEEEEcC
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEG 1029 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~--~~~~~~~~VlEvk~i~G 1029 (1324)
+..++.+|.++|++++.||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|
T Consensus 621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG 700 (1049)
T PRK14845 621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKG 700 (1049)
T ss_pred HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999998888776654444 45678999999999999
Q ss_pred ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecc-eeecccccccccceeeeccccccccCCCce
Q 000735 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGL 1108 (1324)
Q Consensus 1030 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~-~~~~~k~v~aa~gv~i~~~gL~~~~aG~~l 1108 (1324)
+|+|++++|.+|+|++||+|++|++++|++++||+|++|.|++++|+.+ .|.+++++.++++|+|.++||+.+.+|+.|
T Consensus 701 ~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~ 780 (1049)
T PRK14845 701 LGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPI 780 (1049)
T ss_pred ceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeE
Confidence 9999999999999999999999999999999999999999999999766 788999999999999999999999999999
Q ss_pred EEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcccHHHHHHHhccCCceeeEEEeeeCccccchHHHHHhhh
Q 000735 1109 YVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVML 1188 (1324)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~v~~~DV~~A~~~~ 1188 (1324)
+|+.++++++.++++++.++.++ .+.....||||||||+||||||+.+|+. ..|||++++|||||++||++|++|+
T Consensus 781 ~v~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~ 856 (1049)
T PRK14845 781 RIVPTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYK 856 (1049)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhh
Confidence 99999999988888888877655 3556788999999999999999999997 6799999999999999999999999
Q ss_pred cccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccccCC
Q 000735 1189 EKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKK 1268 (1324)
Q Consensus 1189 ~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~a~~p~~~~i~~~~vf~~~ 1268 (1324)
+++++||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++.+++....++|||+++|+|.+||+.+
T Consensus 857 ~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~ 936 (1049)
T PRK14845 857 QENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRS 936 (1049)
T ss_pred ccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred CCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1269 DPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1269 ~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|+||||+|++|+|++|++||..++.+ +|+|.||+|++++|++|++|+||||+|
T Consensus 937 ~~~IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i 990 (1049)
T PRK14845 937 NPAIVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAI 990 (1049)
T ss_pred CCeEEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEE
Confidence 999999999999999999997656644 499999999999999999999999987
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-93 Score=879.42 Aligned_cols=528 Identities=47% Similarity=0.750 Sum_probs=478.8
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhh-cc-ccccccCCCEEEEeCCCC
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE-LK-ANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~-v~-~~~~~~~~~I~IIDTPGH 867 (1324)
..+|+|+|+||||+||||||||++|+++++..++.++|||++|++++++......... +. ....+..++|+|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 4689999999999999999999999999999999999999999999887543211100 00 012234467999999999
Q ss_pred cchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++|..++.++++.||++|||||+++|+++||++++.++...++|+|||+||||+++.|....+..|..++..+...++..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888889999999998999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhh--cccccceeEEEEE
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1025 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~--~~~~~~~~VlEvk 1025 (1324)
|...+..+..+|..+||+.++||....|++.+++||+||++|+||++|+..|+.+++..|...+. ...+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999999888899999999999999999999999998877776665454 4567899999999
Q ss_pred EEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceee-ecceeecccccccccceeeeccccccccC
Q 000735 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1324)
Q Consensus 1026 ~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~r-Vk~~~~~~k~v~aa~gv~i~~~gL~~~~a 1104 (1324)
.++|+|++++++|.+|+|++||.|++++.+||++++||+|++|.|++++| +.+.|.+++.+.++++++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999999999999999999999999 77788999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcccHHHHHHHhccCCceeeEEEeeeCccccchHHHH
Q 000735 1105 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1184 (1324)
Q Consensus 1105 G~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~v~~~DV~~A 1184 (1324)
|+.|+|+.+ +++..+...++.++..+. +.....||||||||+||||||+++|.. .+|||++++|||||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEIR--IETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhcc--ccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 556666666666665542 456778999999999999999999987 689999999999999999999
Q ss_pred HhhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhhccceeeceeEEeccccc
Q 000735 1185 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264 (1324)
Q Consensus 1185 ~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~a~~p~~~~i~~~~v 1264 (1324)
++|+++++.||+||||||+++++|+.+|++.||+|++|+|||||||+|++||.+++++...+....++|||.++|++.+|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999988877778889999999999999
Q ss_pred ccCCCCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1265 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1265 f~~~~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|+|++|++|++|+||||+|
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i 534 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISI 534 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEE
Confidence 99988999999999999999999875477 45799999999999999999999999986
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-86 Score=759.34 Aligned_cols=460 Identities=30% Similarity=0.468 Sum_probs=389.9
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
...|+|+|+||||||||||||||+||++.+..+++||||||||+|.++... +..|+|+|||||..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~---------------G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS---------------GKSITFLDTPGHAA 213 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC---------------CCEEEEecCCcHHH
Confidence 456999999999999999999999999999999999999999999987652 24599999999999
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
|..||.||+..+||+||||.+++|++|||.++|.+++..++|+||+|||||++ +++
T Consensus 214 F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~----------------- 269 (683)
T KOG1145|consen 214 FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GAN----------------- 269 (683)
T ss_pred HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCC-----------------
Confidence 99999999999999999999999999999999999999999999999999986 344
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcC
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G 1029 (1324)
+..++.+|..+|+..+ +||+++++||+||++|.||+.|.+.|+.+ ...|..+..+..+++++|+|++..+|
T Consensus 270 --pekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~-Ae~mdLkA~p~g~~eg~VIES~vdkg 340 (683)
T KOG1145|consen 270 --PEKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLL-AEVMDLKADPKGPAEGWVIESSVDKG 340 (683)
T ss_pred --HHHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHH-HHHhhcccCCCCCceEEEEEeeecCC
Confidence 3566778889998876 67999999999999999999999988754 35677788889999999999999999
Q ss_pred ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeecccccc-ccCCCc
Q 000735 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTG 1107 (1324)
Q Consensus 1030 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gL~~-~~aG~~ 1107 (1324)
+|.+++++|.+|||+.|+.+| || ..|++||+|++... +.+. +.++..+.+.||.. +++|+-
T Consensus 341 ~G~~aT~iVkrGTLkKG~vlV-~G---~~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP~aGD~ 403 (683)
T KOG1145|consen 341 RGPVATVIVKRGTLKKGSVLV-AG---KSWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLPIAGDE 403 (683)
T ss_pred ccceeEEEEeccccccccEEE-Ee---chhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCCCCCce
Confidence 999999999999999999655 64 44899999986542 2222 23455556668877 799999
Q ss_pred eEEeCCCccHHHHHHHHHH----------------HHH---HHH--------h-----hhhccC----CceEEEeCCccc
Q 000735 1108 LYVVGPDDDLEDVKEEAME----------------DMK---SVM--------S-----RIDKSG----EGVCVQASTLGS 1151 (1324)
Q Consensus 1108 l~v~~~~~~~~~~~~~~~~----------------~~~---~~~--------~-----~~~~~~----~~vivkadt~GS 1151 (1324)
++.|.+++.++.+-..... +.. +.+ . +++... .++|||+|++||
T Consensus 404 vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS 483 (683)
T KOG1145|consen 404 VLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGS 483 (683)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccch
Confidence 9999999877654221100 000 000 0 122222 569999999999
Q ss_pred HHHHHHHh---ccCCceeeEEEeeeCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHH
Q 000735 1152 LEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHL 1228 (1324)
Q Consensus 1152 lEAl~~~L---~~~~~~i~v~~~~vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L 1228 (1324)
+|||++.| .+++|+++|+++||||||++||.+|.+ +.|||+||||+.++.+.++|...||+|+.|||||||
T Consensus 484 ~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~L 557 (683)
T KOG1145|consen 484 AEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYRL 557 (683)
T ss_pred HHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehhHHHHH
Confidence 99999876 457899999999999999999999997 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHh-hccceeeceeEEecccccccCCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhc
Q 000735 1229 FDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN 1306 (1324)
Q Consensus 1229 ~d~~~~~~~~l~~~~~~e-~~~~a~~p~~~~i~~~~vf~~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~ 1306 (1324)
||++++.|.+.+++..++ ..|+|. ++.+|...--+++. .||||+|.+|.|.+.+.+++ |+|.+||.|.|.||+|
T Consensus 558 ieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F~i~~~rkr~-~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh 633 (683)
T KOG1145|consen 558 IEDVRELLSERLPPVEEQEVVGEAE---VLATFDIREKRKRV-PVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKH 633 (683)
T ss_pred HHHHHHHHHhhCCCceEEeecccee---eeeeEeeccccccc-cccceEeecceEeecceEEEEeCCcEEEEechhHHhh
Confidence 999999999998886554 568884 44544311112334 59999999999999999996 8999999999999999
Q ss_pred cCcccccccCCCceEEeC
Q 000735 1307 NHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1307 ~k~~v~~~~kG~e~gi~i 1324 (1324)
++++|.+|++|.||||.+
T Consensus 634 ~KedV~~vkkg~ECGl~~ 651 (683)
T KOG1145|consen 634 LKEDVTEVKKGHECGLTF 651 (683)
T ss_pred hhhhhhhhcCCCeeeeEe
Confidence 999999999999999974
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=745.20 Aligned_cols=457 Identities=32% Similarity=0.475 Sum_probs=377.3
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
...|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... ..|+|||||||++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 3569999999999999999999999999999999999999999987765321 1599999999999
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
|..+|.++++.+|++|||||+++|+++||.++|.++...++|+|||+||||+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999852 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcC
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G 1029 (1324)
..+...|..+|+... .|+..+++||+||++|.||++|+.+|+.+ ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 122334444454333 34566899999999999999999998643 22222233456789999999999999
Q ss_pred ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeecccccc-ccCCCce
Q 000735 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1108 (1324)
Q Consensus 1030 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gL~~-~~aG~~l 1108 (1324)
+|++++++|++|+|+.||.|+++ +.+++||+|++++.. ..+.+.+++ .+.+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~----~~~~kVr~l~~~~g~----------~v~~a~~g~--~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVG----AAYGRVRAMIDENGK----------SVKEAGPSK--PVEILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEEC----CCccEEEEEECCCCC----------CCCEECCCC--EEEEeCCCCCCCCCCEE
Confidence 99999999999999999999874 446789999875421 112334444 444558987 5999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEEeCCcccHHHHHHHhc---cCCceeeEE
Q 000735 1109 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1169 (1324)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~vivkadt~GSlEAl~~~L~---~~~~~i~v~ 1169 (1324)
+++.++++++.+.+..... +.+++..+. ....+|||||||+||||||+++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999988877664432221 222332322 244689999999999999998764 567899999
Q ss_pred EeeeCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHh-hc
Q 000735 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AA 1248 (1324)
Q Consensus 1170 ~~~vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e-~~ 1248 (1324)
+++||+||++||++|+++ +|+||||||+++++++++|++.||+|++|+|||||||+|++||.+++++...+ ..
T Consensus 419 ~~~vG~i~~~Dv~~a~~~------~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASAS------NAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHhc------CCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 999999999999999984 89999999999999999999999999999999999999999999999887544 34
Q ss_pred cceeeceeEEecccccccC-CCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1249 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1249 ~~a~~p~~~~i~~~~vf~~-~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
|.|. |+. ||+. +.|+||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|++|++|+||||.|
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~ 562 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGI 562 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEE
Confidence 6553 333 7774 56999999999999999999997 7899999999999999999999999999999986
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=747.38 Aligned_cols=455 Identities=33% Similarity=0.489 Sum_probs=380.0
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
...|+|+|+||||+||||||||++|+++++..++++|||++++++.+.+.. ..|+|||||||.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 357999999999999999999999999999999999999999998876542 3499999999999
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
|..++.++++.+|++|||||+++|+++||.++|.++...++|+|||+||||+.. | ++
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-a------~~---------------- 406 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-A------NP---------------- 406 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-c------CH----------------
Confidence 999999999999999999999999999999999999999999999999999852 1 11
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcC
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G 1029 (1324)
..+...|..+++.++ .|++.++||||||++|.||.+||.+|++.. ..+.....+..++.++|++++.++|
T Consensus 407 ---e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 407 ---DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ---HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 112223333343332 346678999999999999999999997643 2222234456678999999999999
Q ss_pred ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeeccccccc-cCCCc
Q 000735 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1107 (1324)
Q Consensus 1030 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gL~~~-~aG~~ 1107 (1324)
+|++++++|++|+|+.||.|++ |+.+++||.|++... ..+. +.+|..+.+.||... .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~----g~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVA----GTTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEE----CCcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 9999999999999999999886 356889999986431 1222 335666667799885 89999
Q ss_pred eEEeCCCccHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEEeCCcccHHHHHHHh---ccCCceeeE
Q 000735 1108 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1168 (1324)
Q Consensus 1108 l~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~~vivkadt~GSlEAl~~~L---~~~~~~i~v 1168 (1324)
|+++.++..+..+...... .|..++..+... ..+|||||||+||||||..+| .+++++|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999998877766432211 133344444322 368999999999999998765 567899999
Q ss_pred EEeeeCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhh-
Q 000735 1169 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1247 (1324)
Q Consensus 1169 ~~~~vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~- 1247 (1324)
++++||+||++||++|++ ++|+||||||++++.++.+|++.||.|++|+|||||||+|+.+|.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999997 5899999999999999999999999999999999999999999999998876554
Q ss_pred ccceeeceeEEecccccccC-CCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1248 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1248 ~~~a~~p~~~~i~~~~vf~~-~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|.|. |+ .||+. +.|.||||+|++|+|++|++||| |+|.+||.|+|.||+|++++|.+|++|+||||.|
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~ 764 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGL 764 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEe
Confidence 57664 33 26764 56999999999999999999998 7899999999999999999999999999999986
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=727.26 Aligned_cols=458 Identities=31% Similarity=0.445 Sum_probs=374.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
..|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... -....|+|||||||..|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~------------~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK------------DENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec------------CCceEEEEEECCcHHHH
Confidence 358899999999999999999999999998889999999999887654310 01245999999999999
Q ss_pred hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..+|.+++..||++|||||+++|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCc
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~ 1030 (1324)
..+...|..+++.+. .|++.++||+|||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+|.
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 112223333333222 2456789999999999999999999877643 2222234456789999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeeccccc-cccCCCce
Q 000735 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLE-HAIAGTGL 1108 (1324)
Q Consensus 1031 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gL~-~~~aG~~l 1108 (1324)
|++++++|.+|+|+.||.|+++ +.+.+||.|+++.. ..+. +.+|..+.+.||. .+.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998764 35678999885541 1222 3455566678995 46789999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHHHhh---hhccCCceEEEeCCcccHHHHHHHhc---cCCceeeEEEee
Q 000735 1109 YVVGPDDDLEDVKEEAMEDM----------KSVMSR---IDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1172 (1324)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~vivkadt~GSlEAl~~~L~---~~~~~i~v~~~~ 1172 (1324)
+++.++..++.+........ ..++.. ......+|||||||+||||||+.+|. +++|+|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999887766643322111 111111 23345789999999999999998874 567999999999
Q ss_pred eCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhhHHHHhh-ccce
Q 000735 1173 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1251 (1324)
Q Consensus 1173 vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~-~~~a 1251 (1324)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|+++|.+++++...+. .|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999998876543 4665
Q ss_pred eeceeEEecccccccCCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1252 ~~p~~~~i~~~~vf~~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
. |. .||+.++|.||||+|++|+|++|++||| |++.+||.|+|.||+|++++|.+|++|+||||.|
T Consensus 653 ~------v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i 718 (742)
T CHL00189 653 E------VK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFI 718 (742)
T ss_pred E------ee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEe
Confidence 3 33 3777666999999999999999999998 7899999999999999999999999999999986
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=312.39 Aligned_cols=260 Identities=25% Similarity=0.387 Sum_probs=199.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeeeeeeeEecccccc
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIR 842 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~--v-----------------------------~~ge~gGITq~iga~~~~~e~i~ 842 (1324)
..+++|+||||||||||+++|++.. + ...+.+|+|.+++...|.++
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--- 83 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--- 83 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC---
Confidence 4569999999999999999998521 1 11123555555555555443
Q ss_pred chhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-------CcHHHHHHHHHHHhcCC-cEEE
Q 000735 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIV 914 (1324)
Q Consensus 843 ~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~ll~~~~v-P~IV 914 (1324)
.+.|+|||||||.+|...+..|++.+|++|||||+..| +.+||++|+-+++.+++ .+||
T Consensus 84 -------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 84 -------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred -------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 24599999999999999999999999999999999998 99999999999999997 5899
Q ss_pred EeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhh
Q 000735 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1324)
Q Consensus 915 aINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~e 994 (1324)
++||||.+. |++ .+|.+....+...+...||+. ..++||||||++|.||..
T Consensus 151 avNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCcccc
Confidence 999999984 754 344555555666566777763 358999999999999977
Q ss_pred HHHHHHHHHHHhHHhhhhc--------ccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeecc
Q 000735 995 LLLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1324)
Q Consensus 995 Ll~~L~~l~~~~m~e~l~~--------~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll 1066 (1324)
.-...-||-.++|++.|+. +.||+++|.+++.+.|.|++..++|..|.|++||.|++.+.+
T Consensus 202 ~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~----------- 270 (428)
T COG5256 202 KSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG----------- 270 (428)
T ss_pred cCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc-----------
Confidence 6655555555666666643 457899999999999999999999999999999999986543
Q ss_pred CCCCCceeeecceeeccccccccc---ceeeeccccccccCCCceEEeCCC
Q 000735 1067 TPHPMKELRVKGTYLHHKQIKAAQ---GIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1067 ~p~p~~e~rVk~~~~~~k~v~aa~---gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
...+|+++++||.++..+. .|.+.++|+..-....+.++.+++
T Consensus 271 -----~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 271 -----VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred -----ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 2345778888888877664 367777787654444444444443
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=320.32 Aligned_cols=260 Identities=23% Similarity=0.315 Sum_probs=189.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeeeeeeeEecccccc
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIR 842 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~e~i~ 842 (1324)
..+|+|+||+|||||||+++|+... +. ....+|+|.+++.+++.+
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~---- 82 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc----
Confidence 3469999999999999999998521 11 112355666655544433
Q ss_pred chhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCC-------cHHHHHHHHHHHhcCCc-EEE
Q 000735 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIV 914 (1324)
Q Consensus 843 ~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~vP-~IV 914 (1324)
....|+|||||||.+|...+.++++.+|++|||||+..|+ .+||.+||.++..+++| +||
T Consensus 83 ------------~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 83 ------------PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred ------------CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 3356999999999999999999999999999999999997 48999999999999998 679
Q ss_pred Eeecccccc-CcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChh
Q 000735 915 ALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1324)
Q Consensus 915 aINKiDl~~-~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~ 993 (1324)
|+||||+.. .|. ...|......+...|...|++. ..++|||+||++|+||.
T Consensus 151 ~vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 151 CINKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMI 202 (446)
T ss_pred EEEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCcc
Confidence 999999631 232 2234445556666677777642 24799999999999997
Q ss_pred hHHHHHHHHHHHhHHhhh--------hcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeec
Q 000735 994 DLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1324)
Q Consensus 994 eLl~~L~~l~~~~m~e~l--------~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~l 1065 (1324)
+....+.||..+.+.+.| ....|++++|.++|.++|.|++++|+|.+|+|++||.|++++.+ ..
T Consensus 203 ~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~------ 274 (446)
T PTZ00141 203 EKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VT------ 274 (446)
T ss_pred cCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cE------
Confidence 533222222222222222 13457899999999999999999999999999999999987643 22
Q ss_pred cCCCCCceeeecceeecccccc---cccceeeeccccccccCCCceEEeCC
Q 000735 1066 LTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1066 l~p~p~~e~rVk~~~~~~k~v~---aa~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
.+|+++++|+..+. ++..+.|.+.+++......+++++.+
T Consensus 275 --------~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 275 --------TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred --------EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 34555566655544 34557777788766555667776654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=326.42 Aligned_cols=251 Identities=29% Similarity=0.432 Sum_probs=192.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.||+++||+|||||||+++|++.+ +.....+|||++++..++.... ...|+|||||||++|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 379999999999999999999754 3334557999999876654321 1248999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcE-EEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..+..|+..+|++|||||+++|+++||++++.++...++|. |||+||||++.. . .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-------~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-------A--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-------H--------------HHHH
Confidence 99999999999999999999999999999999999999884 799999998621 0 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCc
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~ 1030 (1324)
....+...+...++ ..++||||||++|.||++|++.|..+.... -....+++++|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233334443333 236899999999999999999998655332 12456899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc---ccceeeeccc-cccccCCC
Q 000735 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIKITAQG-LEHAIAGT 1106 (1324)
Q Consensus 1031 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a---a~gv~i~~~g-L~~~~aG~ 1106 (1324)
|+|++|+|.+|+|+.||.|+++|++. .++|+++++|+..+.. ++.+.|.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~~----------------~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVNK----------------PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCCC----------------cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 99999999999999999999876531 2456666677665554 3456777776 76655666
Q ss_pred ceEEeCC
Q 000735 1107 GLYVVGP 1113 (1324)
Q Consensus 1107 ~l~v~~~ 1113 (1324)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 6666655
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=324.04 Aligned_cols=254 Identities=28% Similarity=0.408 Sum_probs=195.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 379999999999999999999643 3334567999999877766543 348999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++. .... ..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~~--------------~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEEI--------------KR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHHH--------------HH
Confidence 9999999999999999999999999999999999999999 999999999862 1110 01
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCc
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~ 1030 (1324)
....+...+...++. ..+++|||||++|.||.+|+..|..++..... .....+++++|..+|.++|.
T Consensus 124 ~~~ei~~~l~~~~~~-----------~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIFL-----------KNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCCC-----------CCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 111222333333321 24799999999999999999998776653211 12356899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc---ccceeeeccccccccCCCc
Q 000735 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTG 1107 (1324)
Q Consensus 1031 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a---a~gv~i~~~gL~~~~aG~~ 1107 (1324)
|+|++|+|.+|+|++||.|+++|.+ ..++|++++.|+..+.. ++.+.|.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~----------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN----------------HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC----------------ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987643 13456667777766554 4568888888876555566
Q ss_pred eEEeCCC
Q 000735 1108 LYVVGPD 1114 (1324)
Q Consensus 1108 l~v~~~~ 1114 (1324)
+++..+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 6655543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=316.45 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=188.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeeeeeeeEeccccccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~e~i~~ 843 (1324)
.+|+|+||+|||||||+++|+... +. ....+|||.+++.+++.
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~------ 81 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE------ 81 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec------
Confidence 459999999999999999998521 10 11124455544444333
Q ss_pred hhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCC-------cHHHHHHHHHHHhcCCc-EEEE
Q 000735 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 915 (1324)
Q Consensus 844 r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~vP-~IVa 915 (1324)
+..+.|+|||||||.+|...+..|++.+|++|||||+..|. .+||++||.++...++| +|||
T Consensus 82 ----------~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 82 ----------TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred ----------CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 33456999999999999999999999999999999999883 28999999999999995 7889
Q ss_pred eecccccc-CcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhh
Q 000735 916 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1324)
Q Consensus 916 INKiDl~~-~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~e 994 (1324)
+||||++. .| .+.+|...+..+...|...|++. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999851 12 12345555666777777777753 247999999999999965
Q ss_pred HHHHHHHHHHHhHHhhhh--------cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeecc
Q 000735 995 LLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1324)
Q Consensus 995 Ll~~L~~l~~~~m~e~l~--------~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll 1066 (1324)
....+.|+-.+.+++.|. ...|+++.|.++|.+.|.|+++.|+|.+|+|++||.|++++++ .
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~-------- 273 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--L-------- 273 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--C--------
Confidence 433222222222222221 2457999999999999999999999999999999999986543 1
Q ss_pred CCCCCceeeecceeeccccccc---ccceeeeccccccccCCCceEEeCC
Q 000735 1067 TPHPMKELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1067 ~p~p~~e~rVk~~~~~~k~v~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
..+|+++++|+..+.. +..+.|.+.+++......+++++..
T Consensus 274 ------~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 274 ------TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ------EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 2456666677665554 3457888888876666667776654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=307.25 Aligned_cols=257 Identities=23% Similarity=0.352 Sum_probs=185.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
..+|+|+||+|||||||+++|++.... ....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 345999999999999999999863211 1124677776654444322 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.++++.+|++|||||+.+|+++||.++|.++...++| +|||+||||++. ...+.
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~~-- 147 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEELL-- 147 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHHH--
Confidence 589999999999999999999999999999999999999999999999999999 678999999862 11111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC--------ChhhHHHHHHHHHHHhHH
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMV 1008 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe--------GI~eLl~~L~~l~~~~m~ 1008 (1324)
......+...|...+++ +..++|||+||++|. +++.|++.|..+++.+
T Consensus 148 ------------~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~-- 203 (394)
T PRK12736 148 ------------ELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP-- 203 (394)
T ss_pred ------------HHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC--
Confidence 11112344555555543 135799999999984 5677777776554422
Q ss_pred hhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc
Q 000735 1009 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1324)
Q Consensus 1009 e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a 1088 (1324)
.-....||++.|.++|.++|.|++++|+|.+|+|+.||.|+++|... ...++|+++++|+..+..
T Consensus 204 -~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~V~sI~~~~~~~~~ 268 (394)
T PRK12736 204 -ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE--------------TQKTVVTGVEMFRKLLDE 268 (394)
T ss_pred -CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCC--------------CeEEEEEEEEECCEEccE
Confidence 11235689999999999999999999999999999999998876421 123456666777665554
Q ss_pred c---cceeeeccccccccCCCceEEeCC
Q 000735 1089 A---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1089 a---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
+ ..+.+.+.|++......+.+++.+
T Consensus 269 a~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 269 GQAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred ECCCCEEEEEECCCcHHhCCcceEEecC
Confidence 3 345666677655444455555543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=305.80 Aligned_cols=225 Identities=26% Similarity=0.334 Sum_probs=176.7
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeeeeeeeEeccccccchhhhccccccc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~ 854 (1324)
+++|| ++|+.|+|||||||.|+|+... .+..+.+|||...-++.+.|.. -
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-------------~ 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-------------G 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-------------C
Confidence 67898 9999999999999999997421 1222346666554443333321 0
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
..+.+++||||||.+|+..++|.+..||+|||||||++|+++||...+.++...++.+|.||||||++ .++..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCHH
Confidence 12569999999999999999999999999999999999999999999999999999999999999996 34432
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcc
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~ 1014 (1324)
.... .+.. .++++. -+++.+||++|.|+..||..|++.++++. ....
T Consensus 196 ~V~~---------------q~~~---lF~~~~------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~---~~~d 242 (650)
T KOG0462|consen 196 RVEN---------------QLFE---LFDIPP------------AEVIYVSAKTGLNVEELLEAIIRRVPPPK---GIRD 242 (650)
T ss_pred HHHH---------------HHHH---HhcCCc------------cceEEEEeccCccHHHHHHHHHhhCCCCC---CCCC
Confidence 2211 1111 122321 38999999999999999999999887753 3457
Q ss_pred cccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCC
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~ 1069 (1324)
.||++.|+++++...+|.++.+.|.+|.|+.||.|..|.+......++-.++.|.
T Consensus 243 ~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~ 297 (650)
T KOG0462|consen 243 APLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE 297 (650)
T ss_pred cchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC
Confidence 8999999999999999999999999999999999998877654444555555554
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=307.26 Aligned_cols=260 Identities=23% Similarity=0.346 Sum_probs=186.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccccchhhhccccccccC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
...+|+|+||+|||||||+++|++... .....+|||++++...+.+. .
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----------------~ 123 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA----------------K 123 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC----------------C
Confidence 445699999999999999999973210 12234778887766655443 2
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHH
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~ 935 (1324)
..|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ...+..
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~~ 197 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELLE 197 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHHH
Confidence 4599999999999999999999999999999999999999999999999999999 578999999862 011111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc---cCCC-------hhhHHHHHHHHHHH
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQK 1005 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~---tGeG-------I~eLl~~L~~l~~~ 1005 (1324)
.+ ...+...|...+++ +..+||||+||+ +|.| ++.|++.|..+++.
T Consensus 198 ~i--------------~~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 198 LV--------------EMELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HH--------------HHHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 10 11233334333432 235899999987 4555 66777777665542
Q ss_pred hHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccc
Q 000735 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1324)
Q Consensus 1006 ~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~ 1085 (1324)
+. -....+|+++|.++|.+.|.|+|++|+|.+|+|++||.|+++|.. |......+|+++++|+..
T Consensus 254 p~---r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~------------~~g~~~~~VksI~~~~~~ 318 (447)
T PLN03127 254 PV---RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR------------PGGPLKTTVTGVEMFKKI 318 (447)
T ss_pred CC---cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC------------CCCcEEEEEEEEEEECcE
Confidence 21 123467999999999999999999999999999999999887642 111223556677777766
Q ss_pred cccc---cceeeeccccccccCCCceEEeCC
Q 000735 1086 IKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1086 v~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
+..+ ..+.+.+.|++......+++++.+
T Consensus 319 v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 319 LDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 5544 346677777765545555555543
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=300.86 Aligned_cols=257 Identities=23% Similarity=0.345 Sum_probs=184.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
..+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~ 75 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NR 75 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------Cc
Confidence 34599999999999999999986311 11224677777655444332 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++|.| ||+||||++. .....
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~~-- 147 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEELL-- 147 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHHH--
Confidence 59999999999999999999999999999999999999999999999999999966 5899999852 11111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC----------ChhhHHHHHHHHHHHh
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe----------GI~eLl~~L~~l~~~~ 1006 (1324)
......+...|..+++. +..+++||+||++|. |++.|++.|..+++.+
T Consensus 148 ------------~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 148 ------------ELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred ------------HHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 11112334445554432 235799999999995 5677777776654321
Q ss_pred HHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccc
Q 000735 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1324)
Q Consensus 1007 m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v 1086 (1324)
.-....+|++.|.++|.++|.|++++|+|.+|+|+.||.|++++... ...++|+++++|+..+
T Consensus 206 ---~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~v 268 (396)
T PRK12735 206 ---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE--------------TQKTTVTGVEMFRKLL 268 (396)
T ss_pred ---CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCC--------------CeEEEEEEEEECCeEe
Confidence 11235689999999999999999999999999999999998875421 2345566777776655
Q ss_pred cc---ccceeeeccccccccCCCceEEeCC
Q 000735 1087 KA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1087 ~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
.. +..+.+.++|++......+++++.+
T Consensus 269 ~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 269 DEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred CEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 53 3446666677655444455555543
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=305.92 Aligned_cols=258 Identities=24% Similarity=0.315 Sum_probs=185.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc----------------ccccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~----------------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
..+|+|+||+|||||||+++|++.. .......|||.+++..++.+. ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NR 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------Cc
Confidence 3459999999999999999998521 112334677777766665443 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.++++.+|++|||||+..|+++||.+||.++...++| +|||+||||++. ...+
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL--- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH---
Confidence 599999999999999999999999999999999999999999999999999999 788999999862 1111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCCh------------------hhHHHH
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI------------------~eLl~~ 998 (1324)
+......+...|...||+ +..+||||+||++|.++ +.|++.
T Consensus 216 -----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 216 -----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 111123455556666653 13589999999998643 233333
Q ss_pred HHHHHHHhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecc
Q 000735 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1324)
Q Consensus 999 L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~ 1078 (1324)
|..+.+.+ .-....|+++.|.++|.+.|.|++++|.|.+|+|++||.|++++..... ..+|++
T Consensus 275 l~~~~~~p---~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~--------------~~~Vks 337 (478)
T PLN03126 275 VDSYIPIP---QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETR--------------STTVTG 337 (478)
T ss_pred HHHhCCCC---CCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCce--------------EEEEEE
Confidence 33221100 1123568999999999999999999999999999999999987543112 244556
Q ss_pred eeecccccc---cccceeeeccccccccCCCceEEeCCC
Q 000735 1079 TYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1079 ~~~~~k~v~---aa~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
+++|+..+. ++..+.|.+.|++......+++++.++
T Consensus 338 I~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 338 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred EEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 666655544 344577777777665555666666543
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=280.18 Aligned_cols=257 Identities=25% Similarity=0.373 Sum_probs=194.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc----------------ccccccCceeeeeeeeEeccccccchhhhccccccccCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~----------------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~ 858 (1324)
.+|+.|||+|||||||.-+|+..- .....++|||+......+.+. .++
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rh 76 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRH 76 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------Cce
Confidence 359999999999999999986321 223345777766554444333 256
Q ss_pred EEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHHH
Q 000735 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 859 I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
+.++|+|||.+|..++..|+.+.|++||||++.+|.+|||++||.++++.++| +||++||+|++. ..++...
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellel- 149 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLEL- 149 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHH-
Confidence 99999999999999999999999999999999999999999999999999997 567999999973 2332222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccC-CC-------hhhHHHHHHHHHHHhHHh
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG-EG-------IPDLLLLLVQWTQKTMVE 1009 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tG-eG-------I~eLl~~L~~l~~~~m~e 1009 (1324)
.-..++..|..+||. |..+|++-.||+.- +| |.+|++.+-.|++.+-.
T Consensus 150 -------------VemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per- 205 (394)
T COG0050 150 -------------VEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER- 205 (394)
T ss_pred -------------HHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-
Confidence 223577888888875 56789999999853 33 34555555544443321
Q ss_pred hhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc--
Q 000735 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-- 1087 (1324)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-- 1087 (1324)
....||.+.|.++|.+.|+|++++|+|.+|+|++|+.+.+.|.... ....+.|++++.+...
T Consensus 206 --~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~--------------~kttvtgvemfrk~ld~~ 269 (394)
T COG0050 206 --DIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKET--------------QKTTVTGVEMFRKLLDEG 269 (394)
T ss_pred --cccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEeccccc--------------ceeEEEhHHHHHHHHhcc
Confidence 2356899999999999999999999999999999999988875422 2234556666665544
Q ss_pred -cccceeeeccccccccCCCceEEeCCC
Q 000735 1088 -AAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1088 -aa~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
++.++.+.++|..+-..-++++++.+.
T Consensus 270 ~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 270 QAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred ccCCCcceEEEeccccceecceEeecCC
Confidence 445788888888887777788887775
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=304.31 Aligned_cols=283 Identities=19% Similarity=0.219 Sum_probs=190.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccc---cccchhh--hcccc-----------c
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE---NIRERTR--ELKAN-----------A 852 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~e---~i~~r~~--~v~~~-----------~ 852 (1324)
..+.+|+++||+|||||||+.+|++.+. .....+|||+++|..++.+. ....-+. ..... .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3456799999999999999999997543 44567899999998765320 0000000 00000 0
Q ss_pred -cccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-CcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCC
Q 000735 853 -TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 853 -~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~ 929 (1324)
......|+|||||||.+|...+.+|++.+|++|||||+..| +++||.+||.++...++| +|||+||||++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------ 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------
Confidence 00124699999999999999999999999999999999996 799999999999988875 789999999862
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh
Q 000735 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e 1009 (1324)
... +...+..+...|... +...++|||+||++|.||+.|++.|...++.+
T Consensus 186 ~~~---------------~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~--- 235 (460)
T PTZ00327 186 EAQ---------------AQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIP--- 235 (460)
T ss_pred HHH---------------HHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---
Confidence 000 111122233333221 12357999999999999999999998655432
Q ss_pred hhhcccccceeEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceee
Q 000735 1010 KLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL 1081 (1324)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~i~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~ 1081 (1324)
.-....++++.|..+|.+.| +|++++|+|.+|+|++||.|.+.|.+-. ... ..=+.+.| ...+|+++++
T Consensus 236 ~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~-~~~-~g~~~~~~-~~~~VksI~~ 312 (460)
T PTZ00327 236 KRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIIS-KDS-GGEFTCRP-IRTRIVSLFA 312 (460)
T ss_pred CCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCccc-ccc-cCcccccc-ceEEEEEEEE
Confidence 11235688999999998865 7999999999999999999998764300 000 00000111 1356777888
Q ss_pred ccccccccc---ceeeecc---ccccccCCCceEEeCC
Q 000735 1082 HHKQIKAAQ---GIKITAQ---GLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1082 ~~k~v~aa~---gv~i~~~---gL~~~~aG~~l~v~~~ 1113 (1324)
|+..+..|. .+.|.+. ++.......+++++.+
T Consensus 313 ~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~ 350 (460)
T PTZ00327 313 ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYP 350 (460)
T ss_pred CCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcC
Confidence 877666442 3444443 4444334455555544
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=305.47 Aligned_cols=259 Identities=25% Similarity=0.377 Sum_probs=185.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--ccc-----------------------------cccCceeeeeeeeEecccccc
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQE-----------------------------GEAGGITQQIGATYFPAENIR 842 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~--v~~-----------------------------ge~gGITq~iga~~~~~e~i~ 842 (1324)
..+|+|+||+|||||||+++|++.. +.. ...+|+|.+++..++.+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~---- 81 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET---- 81 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec----
Confidence 4569999999999999999998432 110 11355565555544433
Q ss_pred chhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeecccc--CCcHHHHHHHHHHHhcCC-cEEEEeecc
Q 000735 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKV 919 (1324)
Q Consensus 843 ~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~ll~~~~v-P~IVaINKi 919 (1324)
....|+|||||||.+|...+.++++.+|++|||||+.+ |+.+||.+++.++...++ |+|||+|||
T Consensus 82 ------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 82 ------------DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred ------------CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 33569999999999999888889999999999999999 999999999999998886 599999999
Q ss_pred ccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 920 Dl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
|++. |.. ..|......+...+...|+.. ..+++|||||++|.||.++...+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9862 210 111222333444455555431 24689999999999999876554
Q ss_pred HHHHHHhHHhhhh--------cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCC
Q 000735 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1324)
Q Consensus 1000 ~~l~~~~m~e~l~--------~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~ 1071 (1324)
.|+..+.+++.|. ...|++++|.++|.+.|.|++++|+|.+|+|+.||.|+++|.+ ..
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~------------ 266 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--VV------------ 266 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--Ce------------
Confidence 4443333433332 2457899999999999999999999999999999999987653 12
Q ss_pred ceeeecceeeccccccc---ccceeeeccccccccCCCceEEeCC
Q 000735 1072 KELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1072 ~e~rVk~~~~~~k~v~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
.+|++++.|+..+.. +..+.|.+.|++....-.+.+++.+
T Consensus 267 --~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 267 --GEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred --EEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 345566666655544 3446777777765444455555544
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=298.84 Aligned_cols=257 Identities=23% Similarity=0.350 Sum_probs=185.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
..+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~ 75 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KR 75 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------Ce
Confidence 34599999999999999999986321 11225777777665444322 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++|+| ||+||||++. ....
T Consensus 76 ~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~~--- 146 (396)
T PRK00049 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHHH---
Confidence 59999999999999999999999999999999999999999999999999999976 6899999862 0110
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC----------ChhhHHHHHHHHHHHh
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe----------GI~eLl~~L~~l~~~~ 1006 (1324)
+......+...|...|+. +..+||+|+||++|. |++.|++.|..+++.+
T Consensus 147 -----------~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 147 -----------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 111122344555555542 235799999999986 4667777776544321
Q ss_pred HHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccc
Q 000735 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1324)
Q Consensus 1007 m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v 1086 (1324)
.-....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|... ....+|+++++|+..+
T Consensus 206 ---~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~ 268 (396)
T PRK00049 206 ---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD--------------TQKTTVTGVEMFRKLL 268 (396)
T ss_pred ---CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC--------------CceEEEEEEEECCcEe
Confidence 11235689999999999999999999999999999999998876421 2335566777777665
Q ss_pred ccc---cceeeeccccccccCCCceEEeCC
Q 000735 1087 KAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1087 ~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
..+ ..+.+.++|++....-.+++++.+
T Consensus 269 ~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 269 DEGQAGDNVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred CEEcCCCEEEEEeCCCCHHHCCcceEEecC
Confidence 543 345666666654444445555543
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=300.60 Aligned_cols=257 Identities=25% Similarity=0.331 Sum_probs=181.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
+.+|+|+||+|||||||+++|++... .....+|+|.++...++.++ ..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~ 75 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NR 75 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------Ce
Confidence 34599999999999999999986421 11223677777665554432 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ...+
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~~~--- 146 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DEEL--- 146 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HHHH---
Confidence 599999999999999999999999999999999999999999999999999999 778999999862 0111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCCh------------------hhHHHH
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI------------------~eLl~~ 998 (1324)
+......+...|...+++. ..+||+|+||++|+|+ +.|++.
T Consensus 147 -----------~~~~~~~l~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~ 205 (409)
T CHL00071 147 -----------LELVELEVRELLSKYDFPG----------DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDA 205 (409)
T ss_pred -----------HHHHHHHHHHHHHHhCCCC----------CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHH
Confidence 1111234445565555431 2479999999999854 344444
Q ss_pred HHHHHHHhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecc
Q 000735 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1324)
Q Consensus 999 L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~ 1078 (1324)
|..+++.+ .-....+|++.|.++|.++|.|++++|+|.+|+|+.||.|+++|.... ..++|++
T Consensus 206 l~~~~~~p---~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--------------~~~~Vks 268 (409)
T CHL00071 206 VDSYIPTP---ERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--------------KTTTVTG 268 (409)
T ss_pred HHhhCCCC---CCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--------------cEEEEEE
Confidence 44332111 112346799999999999999999999999999999999987653211 2345666
Q ss_pred eeeccccccc---ccceeeeccccccccCCCceEEeCC
Q 000735 1079 TYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1079 ~~~~~k~v~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
+++|+..+.. +..+.|.+.|++......+.+++.+
T Consensus 269 I~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 269 LEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 6666654443 3345566666654444445555443
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=299.39 Aligned_cols=260 Identities=23% Similarity=0.335 Sum_probs=177.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccccchhhhccccccccC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
+..+|+|+||+|||||||+++|++... .....+|+|.++....+.+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~ 74 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------N 74 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------C
Confidence 445699999999999999999974311 11223677777655444322 2
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeeccccccCcccCCCchHHH
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl~~~w~~~~~a~~~~ 935 (1324)
..|+|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++...++|.| ||+||||++.. ..+
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~~-- 146 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL-- 146 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HHH--
Confidence 459999999999999999999999999999999999999999999999999999976 68999998620 001
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC-ChhhHHHHHHHHHHHhH----Hhh
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTM----VEK 1010 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe-GI~eLl~~L~~l~~~~m----~e~ 1010 (1324)
+......+...|...++. +..+++|++||++|. |...+...+..++.... ...
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~ 204 (394)
T TIGR00485 147 ------------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE 204 (394)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC
Confidence 111112344455555542 234799999999985 44443332222221110 001
Q ss_pred hhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc-
Q 000735 1011 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA- 1089 (1324)
Q Consensus 1011 l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa- 1089 (1324)
-....+|++.|.++|.++|.|++++|+|.+|+|++||.|++++.. .....+|+++++|+..+..+
T Consensus 205 ~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~--------------~~~~~~VksI~~~~~~~~~a~ 270 (394)
T TIGR00485 205 RETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK--------------DTRKTTVTGVEMFRKELDEGR 270 (394)
T ss_pred CCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC--------------CCcEEEEEEEEECCeEEEEEC
Confidence 123467999999999999999999999999999999999886532 12235566777766655433
Q ss_pred --cceeeeccccccccCCCceEEeC
Q 000735 1090 --QGIKITAQGLEHAIAGTGLYVVG 1112 (1324)
Q Consensus 1090 --~gv~i~~~gL~~~~aG~~l~v~~ 1112 (1324)
..+.|.+.|++......+.+++.
T Consensus 271 aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 271 AGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred CCCEEEEEeCCccHHHCCccEEEec
Confidence 33555556654433344444443
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=284.70 Aligned_cols=259 Identities=27% Similarity=0.379 Sum_probs=196.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC----------------cccccccCceeeeeeeeEeccccccchhhhccccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t----------------~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
..+|+-+||||||||||.-+|+.. +.....++|||+... .+.|+.. .+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeTa--------------~R 117 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYETA--------------KR 117 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeecc--------------cc
Confidence 345999999999999999999731 122345688876544 3333321 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
++--+|||||.+|..++..|....|++||||.+++|.+|||+|||.++++.+++ +||+|||.|++. .++..+.
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~leL 191 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLEL 191 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHHH
Confidence 688999999999999999999999999999999999999999999999999986 778999999973 3333222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcc---C----CC---hhhHHHHHHHHHHHh
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---G----EG---IPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~t---G----eG---I~eLl~~L~~l~~~~ 1006 (1324)
+ --+++..|.++||+ |..+|||..||+. | .| |..|++.+-.+++.+
T Consensus 192 V--------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 192 V--------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred H--------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 2 13567788899986 6789999999886 3 12 334444444333322
Q ss_pred HHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccc
Q 000735 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1324)
Q Consensus 1007 m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v 1086 (1324)
- -..+.||.+.|..+|.+.|+|||++|+|.+|+|+.|+.+-|.|.+..+. ..|.+++++++.+
T Consensus 248 ~---R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lk--------------ttvtgiemF~K~l 310 (449)
T KOG0460|consen 248 E---RDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLK--------------TTVTGIEMFRKSL 310 (449)
T ss_pred c---cccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCccee--------------eEeehHHHHHHHH
Confidence 1 1235688999999999999999999999999999999998887663322 2356778888877
Q ss_pred cccc---ceeeeccccccccCCCceEEeCCCc
Q 000735 1087 KAAQ---GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1087 ~aa~---gv~i~~~gL~~~~aG~~l~v~~~~~ 1115 (1324)
..++ .+.+.++||......++|+++.+..
T Consensus 311 d~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 311 DEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred HhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 7664 4677788988887888888887764
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=310.10 Aligned_cols=224 Identities=27% Similarity=0.308 Sum_probs=170.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------cccCceeeeeeeeEeccccccchhhhcccccccc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~ 855 (1324)
+|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+. |.
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~----------------~~ 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR----------------YN 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE----------------EC
Confidence 476 9999999999999999998632 111 1123455444444433 44
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHH
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1324)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|.++...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999852 22221
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC----------ChhhHHHHHHHHHHH
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe----------GI~eLl~~L~~l~~~ 1005 (1324)
. +..+...|...+...+ .-.+|++++||++|. ||..||+.|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2223333333332211 124799999999996 799999999887765
Q ss_pred hHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCc-eeEEeeecc
Q 000735 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALL 1066 (1324)
Q Consensus 1006 ~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~-~~~~IR~ll 1066 (1324)
+. .....|+++.|..++++++.|.++.++|.+|+|+.||.|++++..+. ...+|..|+
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~ 251 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLL 251 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEE
Confidence 42 13457899999999999999999999999999999999998876442 234555554
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=283.89 Aligned_cols=272 Identities=24% Similarity=0.274 Sum_probs=198.8
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccc---cccccCCCEEEEeCCC
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPG 866 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~---~~~~~~~~I~IIDTPG 866 (1324)
.++|| |+|+.|||||||||++.|+.+.-.-.+..-+.. ..+...+..++|++++.+ ...|+...|+||||||
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E---RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAE---RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhh---hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 35788 999999999999999999865321111000000 011111122334444322 2356677899999999
Q ss_pred CcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
|.+|...+.|.++..|+|||||||.+|.+|||+-.+.-+...+++.||||||||++. +.+
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-------Arp------------- 137 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD-------ARP------------- 137 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-------CCH-------------
Confidence 999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC----------ChhhHHHHHHHHHHHhHHhhhhcccc
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTMVEKLTFRNE 1016 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe----------GI~eLl~~L~~l~~~~m~e~l~~~~~ 1016 (1324)
...++.+.+.|...|-+.+. -.+|+|..||+.|. ++..||+.|+.+++.+. .+...|
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQ--------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~---~~~d~P 204 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQ--------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK---GDLDEP 204 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhh--------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC---CCCCCC
Confidence 23455666777776654332 35899999999884 57788889888877653 456788
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCce-eEEeeeccCCCCCceeeecceeecccccc-cccceee
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 1094 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~-~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i 1094 (1324)
|++.|...-|...+|....++|.+|++++|+.|.+....|.+ -.+|..||....++.. ++. +..|..|
T Consensus 205 lQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~----------ei~eA~AGDIV 274 (603)
T COG1217 205 LQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERI----------EIEEAEAGDIV 274 (603)
T ss_pred eEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeee----------ecccccccCEE
Confidence 999999888999999999999999999999999888765543 3455556543333322 222 3357777
Q ss_pred eccccccccCCCceE
Q 000735 1095 TAQGLEHAIAGTGLY 1109 (1324)
Q Consensus 1095 ~~~gL~~~~aG~~l~ 1109 (1324)
++.||+...+|+++.
T Consensus 275 aiaG~~~~~igdTi~ 289 (603)
T COG1217 275 AIAGLEDINIGDTIC 289 (603)
T ss_pred EEcCccccccccccc
Confidence 788888777776653
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=296.82 Aligned_cols=258 Identities=27% Similarity=0.394 Sum_probs=182.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeeeeeeeEeccccccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t--~v~-----------------------------~ge~gGITq~iga~~~~~e~i~~ 843 (1324)
.+|+|+||+|||||||+++|++. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 45999999999999999999852 111 0113466666665555433
Q ss_pred hhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC---CcHHHHHHHHHHHhcCC-cEEEEeecc
Q 000735 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 919 (1324)
Q Consensus 844 r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l~ll~~~~v-P~IVaINKi 919 (1324)
...|+|||||||.+|...+.++++.+|++|||||+++| ..+||.+++.++...++ |+|||+||+
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 34599999999999999999999999999999999999 88999999888887775 689999999
Q ss_pred ccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 920 Dl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
|++ +|.. ..+......+...+...|++. ..++||||||++|.||.++...+
T Consensus 152 Dl~-~~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSV-NYDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hcc-CccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 986 2311 111222233444555555431 24799999999999998755433
Q ss_pred HHHHHHhHHhhhh--------cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCC
Q 000735 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1324)
Q Consensus 1000 ~~l~~~~m~e~l~--------~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~ 1071 (1324)
.|+....+.+.+. ...|+++.|.++|.+.|.|++++|+|.+|+|+.||.|++++.+ .
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~------------- 267 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--V------------- 267 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--c-------------
Confidence 3322222222221 2457899999999999999999999999999999999987643 1
Q ss_pred ceeeecceeeccccccc---ccceeeeccccccccCCCceEEeCC
Q 000735 1072 KELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1072 ~e~rVk~~~~~~k~v~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
..+|+++++|+..+.. +..+.|.+++++....-.+++++.+
T Consensus 268 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 268 -SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred -EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 2345666666655543 3446677777665444555555544
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=284.23 Aligned_cols=248 Identities=29% Similarity=0.434 Sum_probs=200.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+|+.+||+|||||||+..|.+... .....+|||.++|.++++... ..+.|||+|||.+|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d----------------~~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED----------------GVMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC----------------CceEEeeCCCcHHHHH
Confidence 689999999999999999987543 334468999999999988664 3499999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcE-EEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+..|++..|++||||++++|+++||.|||..|..++++- |||+||+|++.. + +..+.
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHHH
Confidence 9999999999999999999999999999999999999876 999999999731 0 11222
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCce
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~G 1031 (1324)
+..|...+. | .+.++|++|+.+|+||.+|.+.|..+.. ....+...+|+..|..+|.++|.|
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEecccc
Confidence 333333332 1 2468899999999999999999987764 112346788999999999999999
Q ss_pred eEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccc---ccccceeeeccccccccCCCce
Q 000735 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI---KAAQGIKITAQGLEHAIAGTGL 1108 (1324)
Q Consensus 1032 tvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v---~aa~gv~i~~~gL~~~~aG~~l 1108 (1324)
||++|.+.+|.+++||.+++.|.+ ++++|++++.|...+ .|++.|.++++|.+.-..-+++
T Consensus 187 TVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~ 250 (447)
T COG3276 187 TVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGD 250 (447)
T ss_pred EEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhccc
Confidence 999999999999999999987654 456778888776554 4556677777887655667777
Q ss_pred EEeCCC
Q 000735 1109 YVVGPD 1114 (1324)
Q Consensus 1109 ~v~~~~ 1114 (1324)
+++.++
T Consensus 251 ~L~~~~ 256 (447)
T COG3276 251 WLLKPE 256 (447)
T ss_pred EeccCC
Confidence 777665
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=282.68 Aligned_cols=214 Identities=29% Similarity=0.367 Sum_probs=174.5
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeeeeeeeEeccccccchhhhcccccc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~ 853 (1324)
..++|| .+|+.|.|||||||.++|+... ....+.+|||....+..+.|.....
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g---------- 73 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG---------- 73 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC----------
Confidence 457898 9999999999999999997421 1233457888877776665543211
Q ss_pred ccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchH
Q 000735 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1324)
Q Consensus 854 ~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1324)
..+.|+|||||||.+|+-.++|.+..|.++||||||+.|++.||+....++...++-+|.||||||++ .++.
T Consensus 74 -~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Adp 145 (603)
T COG0481 74 -ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AADP 145 (603)
T ss_pred -CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCCH
Confidence 12459999999999999999999999999999999999999999999999999999999999999995 4554
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhc
Q 000735 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1324)
Q Consensus 934 ~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~ 1013 (1324)
.+...+ +..+ .|+.. ...|.+||+||.||+++|..|+..++++- -..
T Consensus 146 ervk~e------------Ie~~------iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~~ 192 (603)
T COG0481 146 ERVKQE------------IEDI------IGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GDP 192 (603)
T ss_pred HHHHHH------------HHHH------hCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCC---CCC
Confidence 322111 1111 35532 36789999999999999999998887653 356
Q ss_pred ccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccC
Q 000735 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1055 (1324)
+.|+++.|+++|++..+|.++.++|.+|+|+.||.|.+..++
T Consensus 193 ~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg 234 (603)
T COG0481 193 DAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTG 234 (603)
T ss_pred CCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecC
Confidence 788999999999999999999999999999999999888775
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=297.51 Aligned_cols=257 Identities=23% Similarity=0.253 Sum_probs=183.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------cccCceeeeeeeeEeccccccchhhhccccccc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~ 854 (1324)
++|+ |+|+||+|||||||+++|++.. +.. ....|||.......+. |
T Consensus 4 ~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~----------------~ 65 (607)
T PRK10218 4 KLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK----------------W 65 (607)
T ss_pred CceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe----------------c
Confidence 5787 9999999999999999999621 211 1124455444444443 3
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
....|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+.
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~~ 138 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARPD 138 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCchh
Confidence 34569999999999999999999999999999999999999999999999999999999999999985 23333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC----------ChhhHHHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe----------GI~eLl~~L~~l~~ 1004 (1324)
..+ ..+...|...++.. ....+||+++||++|. ||..||+.|+.+++
T Consensus 139 ~vl---------------~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 139 WVV---------------DQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HHH---------------HHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 222 22222332222211 1234799999999998 58888888888776
Q ss_pred HhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCce-eEEeeeccCCCCCceeeecceeecc
Q 000735 1005 KTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHH 1083 (1324)
Q Consensus 1005 ~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~-~~~IR~ll~p~p~~e~rVk~~~~~~ 1083 (1324)
.+. .....||++.|..+++.++.|+++.++|.+|+|+.||.|++++..+.. ..+|..|+...... +
T Consensus 196 ~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~----------~ 262 (607)
T PRK10218 196 APD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLE----------R 262 (607)
T ss_pred CCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCC----------c
Confidence 542 134568999999999999999999999999999999999887653321 23444443221111 1
Q ss_pred cccc-cccceeeeccccccccCCCce
Q 000735 1084 KQIK-AAQGIKITAQGLEHAIAGTGL 1108 (1324)
Q Consensus 1084 k~v~-aa~gv~i~~~gL~~~~aG~~l 1108 (1324)
..+. +.+|-.+++.||.....|+++
T Consensus 263 ~~v~~a~AGdIvai~gl~~~~~GdTl 288 (607)
T PRK10218 263 IETDLAEAGDIVAITGLGELNISDTV 288 (607)
T ss_pred eECCEEcCCCEEEEECccccccCcEE
Confidence 1222 224555556677666666655
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=282.43 Aligned_cols=254 Identities=23% Similarity=0.325 Sum_probs=163.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccc-------------c------------------ccCceeeeeeeeEecccccc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN--VQE-------------G------------------EAGGITQQIGATYFPAENIR 842 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~--v~~-------------g------------------e~gGITq~iga~~~~~e~i~ 842 (1324)
.|+|+||+|||||||+++|++.. +.. + ..+|+|.+++..++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~------ 75 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF------ 75 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE------
Confidence 48999999999999999997532 110 1 11233333333322
Q ss_pred chhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeecccc
Q 000735 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1324)
Q Consensus 843 ~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl 921 (1324)
.+....|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++...++| +|||+||||+
T Consensus 76 ----------~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 76 ----------STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred ----------ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 23445799999999999999889999999999999999999999999999999998875 8889999998
Q ss_pred ccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 922 ~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
+. |.. .. +......+...+...++ ..+++||+||++|.||..+...+.|
T Consensus 146 ~~-~~~----~~--------------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YDE----EV--------------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-chH----HH--------------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 62 210 10 11111122222333333 2468999999999999864332222
Q ss_pred HHHHhHHhhh--------hcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCce
Q 000735 1002 WTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKE 1073 (1324)
Q Consensus 1002 l~~~~m~e~l--------~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e 1073 (1324)
+-.+.+.+.| ....++++.|..++.....+..+.|+|.+|+|++||.|++++.+ ..
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~-------------- 258 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--RS-------------- 258 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--cE--------------
Confidence 1111121111 12457888888876543323336799999999999999987643 22
Q ss_pred eeecceeecccccccc---cceeeeccccccccCCCceEEeCCC
Q 000735 1074 LRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1074 ~rVk~~~~~~k~v~aa---~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
.+|+++++|+..+..+ ..+.+.+.+. .....+++++.++
T Consensus 259 ~~VksI~~~~~~~~~a~~G~~v~l~l~~~--~~i~rG~vl~~~~ 300 (406)
T TIGR02034 259 SRVARIVTFDGDLEQARAGQAVTLTLDDE--IDISRGDLLAAAD 300 (406)
T ss_pred EEEEEEEECCcccCEeCCCCEEEEEECCc--cccCCccEEEcCC
Confidence 4455666666554433 3455555432 2233444555543
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=279.92 Aligned_cols=280 Identities=22% Similarity=0.235 Sum_probs=184.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEecccccc--c--hhhhccc--c----ccccCCCEE
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR--E--RTRELKA--N----ATLKVPGLL 860 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~e~i~--~--r~~~v~~--~----~~~~~~~I~ 860 (1324)
..+|+|+||+|||||||+++|.+... .....+|+|..++..++.+.... . .+..... . .......|+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 35699999999999999999976432 22335789988886655432100 0 0000000 0 001134699
Q ss_pred EEeCCCCcchhhhhhhccCcccceEEeeccccCC-cHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHHHH
Q 000735 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 861 IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~L~ 938 (1324)
|||||||.+|...+.++++.+|++|||||+++|+ ++||.+++.++...++ |+|||+||||++.. .. +
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-------~~---~- 152 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-------EK---A- 152 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-------HH---H-
Confidence 9999999999999999999999999999999998 9999999999988876 58999999998621 00 0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccc
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1324)
Q Consensus 939 ~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~ 1018 (1324)
...+..+...+... +...+++||+||++|.||+.|+++|..+++.+ .-....+++
T Consensus 153 ----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 153 ----------LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred ----------HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 01112222222211 11347999999999999999999998765422 112356889
Q ss_pred eeEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc-
Q 000735 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA- 1089 (1324)
Q Consensus 1019 ~~VlEvk~i~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa- 1089 (1324)
+.|.++|.+.| +|+|+.|.|.+|+|++||.|.+++........... +. |. ..+|+++++|+..+..|
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~-~~--~~-~~~V~sI~~~~~~~~~a~ 283 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTK-WE--PI-YTEITSLRAGGYKVEEAR 283 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCcccccccccc-cc--cc-ceEEeEEEECCEECCEEc
Confidence 99999998876 57799999999999999999987642000000000 00 11 24677777777665543
Q ss_pred --cceeeecc---ccccccCCCceEEeCC
Q 000735 1090 --QGIKITAQ---GLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1090 --~gv~i~~~---gL~~~~aG~~l~v~~~ 1113 (1324)
..+.|.+. ++.......+.+++.+
T Consensus 284 ~G~~v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 284 PGGLVGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred CCCEEEEeeccCCCCCHHHcccccEEEcC
Confidence 23444432 3433333344444444
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=264.08 Aligned_cols=281 Identities=23% Similarity=0.332 Sum_probs=196.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc--------------CceeeeeeeeEeccccccchhhhccccc--------
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIRERTRELKANA-------- 852 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~--------------gGITq~iga~~~~~e~i~~r~~~v~~~~-------- 852 (1324)
.+|+++||+|||||||+++|......+|.. +|.|.+|....+-+..-. ...+....
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk--~~rlknPld~aE~~~v 195 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGK--VVRLKNPLDEAEKAAV 195 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCc--eEeecCcccHHHHhHh
Confidence 469999999999999999998766555432 344444433222222100 00110000
Q ss_pred -cccCCCEEEEeCCCCcchhhhhhhcc--CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCC
Q 000735 853 -TLKVPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 853 -~~~~~~I~IIDTPGHe~F~~~r~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~ 929 (1324)
.-...-+.|+||-||+.|...+.||+ +..|+.+|||.|++|++..|.+||.++....+|+|||+||||+..
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~------ 269 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP------ 269 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc------
Confidence 00123489999999999998888886 458999999999999999999999999999999999999999863
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCch---hh------hhcccCCC-CceeEEeCCCccCCChhhHHHHH
Q 000735 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT---EL------YYKNKDRG-ETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~---e~------~~~~~~~g-~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
...+...+. .|...|...|-.+ .. .......+ ..+|+|.||+.||+|++-|..++
T Consensus 270 ddr~~~v~~---------------ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVE---------------EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHH---------------HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 333333222 2222222211000 00 00001123 37999999999999996555554
Q ss_pred HHHHHHhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecce
Q 000735 1000 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079 (1324)
Q Consensus 1000 ~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~ 1079 (1324)
. +++..- ...+..+|.+.|.++|.+.|.|+++.+.|.+|.|+.||++++++.. .+.+++++|+|+
T Consensus 335 ~-~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSI 399 (527)
T COG5258 335 L-LLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSI 399 (527)
T ss_pred H-hCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEE
Confidence 4 444432 3456788999999999999999999999999999999999986543 455678899999
Q ss_pred eeccccccccc---ceeeeccccccccCCCceEEeCC
Q 000735 1080 YLHHKQIKAAQ---GIKITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1080 ~~~~k~v~aa~---gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
++||-.|..|. -+.|+++|.+.-....+|+++..
T Consensus 400 emh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 99998877664 26677788877656667776654
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=290.58 Aligned_cols=213 Identities=29% Similarity=0.358 Sum_probs=162.0
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeeeeeeeEeccccccchhhhccccccc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~ 854 (1324)
..+|| |+|+||+|||||||+++|++.. +.. ...+|||.......+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 46787 9999999999999999998631 111 123455555444433332100 0
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
....|+|||||||.+|...+.++++.||++|||||+++|++.||..+|.++...++|+|+|+||||+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 124599999999999999999999999999999999999999999999998888999999999999852 1111
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcc
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~ 1014 (1324)
..+ ..+... .++. ...+|++||++|.||.+|+++|+.+++.+.. ...
T Consensus 145 ~v~---------------~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~---~~~ 191 (600)
T PRK05433 145 RVK---------------QEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG---DPD 191 (600)
T ss_pred HHH---------------HHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCccccC---CCC
Confidence 110 111111 1221 1258999999999999999999887765421 345
Q ss_pred cccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccC
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1055 (1324)
.|+++.|+.++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 78999999999999999999999999999999999887754
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=289.29 Aligned_cols=212 Identities=26% Similarity=0.337 Sum_probs=160.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------cccCceeeeeeeeEeccccccchhhhcccccccc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v--~~-------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~ 855 (1324)
.+|| |+|+||+|||||||+++|++..- .. ...+|||.......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 4677 99999999999999999986321 10 122455555444444332100 01
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHH
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1324)
...|+|||||||.+|..++.++++.||++|||||+++|++.||..+|.++...++|+|+|+||||+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999988888999999999999852 11111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhccc
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~ 1015 (1324)
. ...+... .|+. ...++++||++|.||.+||++|+..++.+.. ....
T Consensus 142 ~---------------~~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~---~~~~ 188 (595)
T TIGR01393 142 V---------------KKEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKG---DPDA 188 (595)
T ss_pred H---------------HHHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC---CCCC
Confidence 0 0111111 1221 1258999999999999999999887765421 3457
Q ss_pred ccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccC
Q 000735 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1016 ~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1055 (1324)
|+++.|+.++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 8999999999999999999999999999999999887764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=274.24 Aligned_cols=281 Identities=22% Similarity=0.231 Sum_probs=183.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccccc-------cchhhh-ccc-ccc-ccCCCE
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENI-------RERTRE-LKA-NAT-LKVPGL 859 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~e~i-------~~r~~~-v~~-~~~-~~~~~I 859 (1324)
...+|+|+||+|||||||+++|.+... .....+|+|.+++...+.+... .-.+.. +.. ... .....|
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 345699999999999999999976422 2233578999888655444210 000000 000 000 002469
Q ss_pred EEEeCCCCcchhhhhhhccCcccceEEeeccccCC-cHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHHH
Q 000735 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 860 ~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
+|||||||.+|...+.+++..+|++|||||+.+|+ .++|.+++.++...++ |+|||+||+|++.. ..+
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~------~~~---- 157 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK------ERA---- 157 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc------hhH----
Confidence 99999999999999999999999999999999998 8999999999988886 69999999998621 000
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhccccc
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 1017 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~ 1017 (1324)
...+..+...+... +...+++|++||++|.||+.|+++|..+++.+. -....++
T Consensus 158 -----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~---~~~~~~~ 211 (411)
T PRK04000 158 -----------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE---RDLDKPP 211 (411)
T ss_pred -----------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC---CCCCCCc
Confidence 00111222222111 112478999999999999999999987654321 1235678
Q ss_pred ceeEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc
Q 000735 1018 QCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1324)
Q Consensus 1018 ~~~VlEvk~i~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa 1089 (1324)
+++|.++|.+.| .|++++|+|.+|+|++||.|.+++........+..+ .| ...+|+++++|+..+..+
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~---~~-~~~~VksI~~~~~~~~~a 287 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKW---EP-ITTKIVSLRAGGEKVEEA 287 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccc---cc-ceEEEeEEEECCEECCEE
Confidence 999999998876 466999999999999999999876531000000000 01 124677777777665543
Q ss_pred ---cceeeecc---ccccccCCCceEEeCC
Q 000735 1090 ---QGIKITAQ---GLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1090 ---~gv~i~~~---gL~~~~aG~~l~v~~~ 1113 (1324)
..+.|++. ++.......+.+++.+
T Consensus 288 ~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 288 RPGGLVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred cCCCEEEEEeccCCCCCHHHccCccEEEcC
Confidence 23444443 3333223344444444
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=279.12 Aligned_cols=272 Identities=21% Similarity=0.251 Sum_probs=165.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--cccc---------ccCceee---eeeeeEeccccccchhhhcccc---ccccCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN--VQEG---------EAGGITQ---QIGATYFPAENIRERTRELKAN---ATLKVP 857 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~--v~~g---------e~gGITq---~iga~~~~~e~i~~r~~~v~~~---~~~~~~ 857 (1324)
+.|+|+||+|||||||+++|++.. +... ...|.|. ++..+.......+.|..++... +.+...
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~ 107 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKR 107 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCc
Confidence 569999999999999999998542 1110 0011110 0000000011111222222211 223345
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++ |+|||+||||++. |.. .
T Consensus 108 ~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~-~~~----~---- 178 (474)
T PRK05124 108 KFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD-YSE----E---- 178 (474)
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc-chh----H----
Confidence 79999999999999988999999999999999999999999999999988885 6889999999862 211 0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhh-----
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL----- 1011 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l----- 1011 (1324)
.+......+...+...++ ...++|||+||++|.||..+...+-|+....+.+.|
T Consensus 179 ----------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~ 237 (474)
T PRK05124 179 ----------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDI 237 (474)
T ss_pred ----------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCC
Confidence 011111122222323321 124799999999999998765432222112222211
Q ss_pred ---hcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc
Q 000735 1012 ---TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1324)
Q Consensus 1012 ---~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a 1088 (1324)
....++++.|..++........+.|+|.+|+|++||.|++++++ . ..+|+++++|+..+..
T Consensus 238 ~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~--------------~~~VksI~~~~~~v~~ 301 (474)
T PRK05124 238 QRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG--K--------------ESNVARIVTFDGDLEE 301 (474)
T ss_pred CCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC--c--------------eEEEEEEEEcCccccC
Confidence 12457889888886543222225699999999999999987643 1 2456666666655443
Q ss_pred ---ccceeeeccccccccCCCceEEeCCC
Q 000735 1089 ---AQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1089 ---a~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
+..+.|.+.+. .....+.+++.+.
T Consensus 302 A~aG~~V~l~L~~~--~~i~rG~VL~~~~ 328 (474)
T PRK05124 302 AFAGEAITLVLEDE--IDISRGDLLVAAD 328 (474)
T ss_pred cCCCCEEEEEeCCc--cccCCccEEECCC
Confidence 33455555442 2334455555543
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=246.88 Aligned_cols=165 Identities=39% Similarity=0.546 Sum_probs=125.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc------------------cccCceeeeeeeeEeccccccchhhhccccccccC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~------------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
++|+|+||+|||||||+++|++..... ...+++|..++...+.. .+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~ 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENN 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------cccc
Confidence 459999999999999999998543221 12245565555554430 1234
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHH
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
..|+|||||||.+|...+.++++.+|++|||||+.+|+++||.++|.++...++|+|||+||||++.
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~------------- 136 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE------------- 136 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-------------
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-------------
Confidence 5699999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQ-LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~-L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.++...+..+... +...++.. ...+|+||+||++|.||..|++.|..++|
T Consensus 137 ---------~~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 ---------KELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ---------hhHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1222223333322 33333321 02589999999999999999999988765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=279.20 Aligned_cols=302 Identities=25% Similarity=0.279 Sum_probs=193.0
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecc-ccccchhhhccc---cccccC-CCEEEEe
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA-ENIRERTRELKA---NATLKV-PGLLVID 863 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~-e~i~~r~~~v~~---~~~~~~-~~I~IID 863 (1324)
...+|| |+|+||+|||||||+++|+...-.....|. .+-|+++..| ..-++|.++++. ...|.. +.|+|||
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~--v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGE--VHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCcc--ccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 456788 999999999999999999853211111111 1112222221 122233333332 123443 6799999
Q ss_pred CCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
||||.+|+..+.|.++.||+||+|||+..|+++||...|+++..+++|.|+++||||++ .++|...+.+....
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~-------~a~~~~~~~~l~~~ 155 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL-------GADFYLVVEQLKER 155 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc-------ccChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 34555444433221
Q ss_pred HHH-------------HH--------------H-----------HHH--------HHHHHHHHHcCC-chhhhhcccC--
Q 000735 944 VQN-------------EF--------------N-----------MRL--------VQIVTQLKEQGM-NTELYYKNKD-- 974 (1324)
Q Consensus 944 v~~-------------ef--------------~-----------~~l--------~~I~~~L~e~Gl-~~e~~~~~~~-- 974 (1324)
+.. .| . ... ..+...+.+... ..+.|..+..
T Consensus 156 l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~ 235 (697)
T COG0480 156 LGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPT 235 (697)
T ss_pred hCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCcc
Confidence 110 00 0 000 000001111000 0111211110
Q ss_pred -------------CCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhh-----------------hhcccccceeEEEE
Q 000735 975 -------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------LTFRNELQCTVLEV 1024 (1324)
Q Consensus 975 -------------~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~-----------------l~~~~~~~~~VlEv 1024 (1324)
-+..+|+++.||..+-|+..||+.++.+++.++... .....|+.+.|+.+
T Consensus 236 ~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi 315 (697)
T COG0480 236 EEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKI 315 (697)
T ss_pred HHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEe
Confidence 134789999999999999999999999988753321 11245688899999
Q ss_pred EEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeeccccccccC
Q 000735 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1324)
Q Consensus 1025 k~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gL~~~~a 1104 (1324)
...+..|....++|++|+|+.|+.|+..+.. ...+|-.|+.++.... .....+. .|..+++.||..+..
T Consensus 316 ~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~~-------~~v~~~~--AG~I~a~~Gl~~~~t 384 (697)
T COG0480 316 MTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNER-------EEVDEVP--AGDIVALVGLKDATT 384 (697)
T ss_pred EecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCce-------eeccccc--CccEEEEEccccccc
Confidence 8888889998899999999999988765443 1222333322221111 1112222 355666778888888
Q ss_pred CCceEEeC
Q 000735 1105 GTGLYVVG 1112 (1324)
Q Consensus 1105 G~~l~v~~ 1112 (1324)
|+++...+
T Consensus 385 GdTl~~~~ 392 (697)
T COG0480 385 GDTLCDEN 392 (697)
T ss_pred CCeeecCC
Confidence 88776444
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=262.72 Aligned_cols=227 Identities=26% Similarity=0.436 Sum_probs=171.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeeeeeeeEeccccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENI 841 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~--v-----------------------------~~ge~gGITq~iga~~~~~e~i 841 (1324)
-...++|+||||+|||||+++|++.- + ...+.+|+|.+++.++|...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 34568999999999999999997421 0 11234566666665555422
Q ss_pred cchhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-------CcHHHHHHHHHHHhcCC-cEE
Q 000735 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1324)
Q Consensus 842 ~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~ll~~~~v-P~I 913 (1324)
...++|||+|||-+|...+..|+..+|++|||||++.| +..||++|..+|+.+|+ .+|
T Consensus 254 --------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 254 --------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred --------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 24599999999999999999999999999999999865 35799999999999996 689
Q ss_pred EEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCCceeEEeCCCccCCCh
Q 000735 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1324)
Q Consensus 914 VaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L-~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI 992 (1324)
|+|||||++ +|+.. +|.+....+..+| ...||.. ..+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~e----------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFKE----------SSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCccc----------CCcceEecccccCCcc
Confidence 999999998 68643 4444445555566 5566642 4579999999999998
Q ss_pred hhH--HHHHHHHH-HHhHHhhhh--------cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEE
Q 000735 993 PDL--LLLLVQWT-QKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061 (1324)
Q Consensus 993 ~eL--l~~L~~l~-~~~m~e~l~--------~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~ 1061 (1324)
-.. ...|.+|+ .++++..++ +..||+++|++++..++.|.+++|.|..|.|+.||+|+++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 654 12343443 344554442 3457999999999999999999999999999999999987543 2344
Q ss_pred eeecc
Q 000735 1062 IRALL 1066 (1324)
Q Consensus 1062 IR~ll 1066 (1324)
|+.|.
T Consensus 449 vk~l~ 453 (603)
T KOG0458|consen 449 VKGLT 453 (603)
T ss_pred EEeee
Confidence 55543
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=280.34 Aligned_cols=271 Identities=20% Similarity=0.244 Sum_probs=167.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--cc---------cccCceeeeeeeeEecccc---ccchhhhccc---cccccCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV--QE---------GEAGGITQQIGATYFPAEN---IRERTRELKA---NATLKVP 857 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v--~~---------ge~gGITq~iga~~~~~e~---i~~r~~~v~~---~~~~~~~ 857 (1324)
..|+|+||+|||||||+++|++..- .. ....|.|.+.-.+.+..+. .+.++.++.. ...+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 3499999999999999999986431 10 0012222111111111111 1222222221 2234456
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++...++ |+|||+||||++. |.. .
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~---- 175 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E---- 175 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H----
Confidence 79999999999999888899999999999999999999999999999998885 6888999999862 211 0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhh-----
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL----- 1011 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l----- 1011 (1324)
.+......+...+...++ ..+++||+||++|.||.++...+.|+..+.+.+.|
T Consensus 176 ----------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~ 233 (632)
T PRK05506 176 ----------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI 233 (632)
T ss_pred ----------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC
Confidence 111112223333344443 24689999999999998543322111111122111
Q ss_pred ---hcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc
Q 000735 1012 ---TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1324)
Q Consensus 1012 ---~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a 1088 (1324)
....|+++.|..++.....+..+.|+|.+|+|++||.|+++|++ . ..+|+++++|+..+..
T Consensus 234 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~~~VksI~~~~~~~~~ 297 (632)
T PRK05506 234 ASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--K--------------TSRVKRIVTPDGDLDE 297 (632)
T ss_pred CCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--c--------------eEEEEEEEECCceeCE
Confidence 12457888888876543122236799999999999999987643 2 2445566666555443
Q ss_pred ---ccceeeeccccccccCCCceEEeCCC
Q 000735 1089 ---AQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1089 ---a~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
+..+.|.+.+. .....+++++.++
T Consensus 298 a~aG~~v~i~l~~~--~~i~rG~vL~~~~ 324 (632)
T PRK05506 298 AFAGQAVTLTLADE--IDISRGDMLARAD 324 (632)
T ss_pred EcCCCeEEEEecCc--cccCCccEEecCC
Confidence 33455555532 2234555555554
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=249.85 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=168.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeeeeeeeEeccccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENI 841 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v---------------------------------~~ge~gGITq~iga~~~~~e~i 841 (1324)
..++.+|+||.|||||+++|++..- +..+.-|||+++..-||.+..
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K- 85 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK- 85 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc-
Confidence 3489999999999999999986321 111235677777766665543
Q ss_pred cchhhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC-cEEEEeeccc
Q 000735 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 920 (1324)
Q Consensus 842 ~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVaINKiD 920 (1324)
+.|.|.|||||+-|+.+|..|++-||++||+||+.+|+..||+.|.-++..+++ .+||++||||
T Consensus 86 ---------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 86 ---------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred ---------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeec
Confidence 469999999999999999999999999999999999999999999999999996 5889999999
Q ss_pred cccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 921 l~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
|+ +|+. ..|.........+....|+. .+.+||+||+.|+||-.-...+-
T Consensus 151 Lv-dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mp 199 (431)
T COG2895 151 LV-DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMP 199 (431)
T ss_pred cc-ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCC
Confidence 97 4432 23333334444455555653 35899999999999987777777
Q ss_pred HHHHHhHHhhhhc--------ccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCC
Q 000735 1001 QWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1068 (1324)
Q Consensus 1001 ~l~~~~m~e~l~~--------~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p 1068 (1324)
|+..+++++.|.. ..+++++|..|..-.-.=.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 200 WY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 200 WYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred cccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 7777777665532 345888887765422212235678999999999999998875 34555555544
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=274.35 Aligned_cols=240 Identities=23% Similarity=0.245 Sum_probs=166.2
Q ss_pred cccCCCCCEEEEEcCCCCCHHHHHHHHHcCcc---ccc---------------ccCceeeeeeeeEeccccccchhhhcc
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEG---------------EAGGITQQIGATYFPAENIRERTRELK 849 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v---~~g---------------e~gGITq~iga~~~~~e~i~~r~~~v~ 849 (1324)
.+.++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+.....+
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~------------- 70 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC------------- 70 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-------------
Confidence 4566887 99999999999999999984211 000 12344444433333
Q ss_pred ccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCC
Q 000735 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 850 ~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~ 929 (1324)
.|..+.|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 71 ---~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 71 ---FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred ---EECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 34456799999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHHhHHHHH-------------------------------------------------HHHHHHHHHHHHHH
Q 000735 930 NAPIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLK 960 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~~-------------------------------------------------ef~~~l~~I~~~L~ 960 (1324)
+++...+......+.. ........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 2232222221110000 00000011111111
Q ss_pred HcC-Cchhhhhccc---------------CCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhh--------------
Q 000735 961 EQG-MNTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-------------- 1010 (1324)
Q Consensus 961 e~G-l~~e~~~~~~---------------~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~-------------- 1010 (1324)
+.. -..+.|..+. ..+..+|++..||+++.||..||+.|+.+++.+....
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 100 0000111110 1246789999999999999999999999987654210
Q ss_pred ---hhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEc
Q 000735 1011 ---LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1052 (1324)
Q Consensus 1011 ---l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1052 (1324)
.++..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~ 345 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNS 345 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeC
Confidence 123456888999999888899999999999999999998644
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=272.89 Aligned_cols=240 Identities=24% Similarity=0.269 Sum_probs=165.4
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCc-c--ccc---------------ccCceeeeeeeeEeccccccchhhhccc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-V--QEG---------------EAGGITQQIGATYFPAENIRERTRELKA 850 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~-v--~~g---------------e~gGITq~iga~~~~~e~i~~r~~~v~~ 850 (1324)
+..+|+ |+|+||+|||||||+++|++.. . ..+ ..+|||.++...++.
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~------------- 69 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF------------- 69 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-------------
Confidence 445777 9999999999999999997521 1 000 134444444444443
Q ss_pred cccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCC
Q 000735 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1324)
Q Consensus 851 ~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~ 930 (1324)
|....|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 70 ---~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 70 ---WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred ---ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 3445799999999999999999999999999999999999999999999999999999999999999863
Q ss_pred chHHHHHHHHhHHHHH---------------------------------------------HHH----HHHHHHHHHHHH
Q 000735 931 APIVKAIKQQNTDVQN---------------------------------------------EFN----MRLVQIVTQLKE 961 (1324)
Q Consensus 931 a~~~~~L~~q~~~v~~---------------------------------------------ef~----~~l~~I~~~L~e 961 (1324)
+++...+.+....+.. .+. .....++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222211111000 000 000011111110
Q ss_pred cC-Cchhhhhccc---------------CCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhh---------------
Q 000735 962 QG-MNTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1010 (1324)
Q Consensus 962 ~G-l~~e~~~~~~---------------~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~--------------- 1010 (1324)
.. -..+.|+.+. ..+..+|++.+||.+|.|+..||+.|+.+++.+..-.
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 00 0000111111 1245689999999999999999999999987654210
Q ss_pred -hhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcc
Q 000735 1011 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1324)
Q Consensus 1011 -l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g 1053 (1324)
.++..++.+.|+.+.+.+..|.+..++|++|+|+.||.|..+.
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~ 343 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTT 343 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCC
Confidence 1234568889999999889999999999999999999886543
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=272.18 Aligned_cols=256 Identities=23% Similarity=0.267 Sum_probs=169.4
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccc-cccchhhhccc---cccccCCCEEEEeC
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDT 864 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e-~i~~r~~~v~~---~~~~~~~~I~IIDT 864 (1324)
+..+|+ |+|+||+|||||||+++|+...-.....+.+. -|.+...+. ..+.+..++.. ...|....|+||||
T Consensus 5 ~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~--~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 5 LMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVE--DGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred cccccE--EEEECCCCCcchhHHHHHHHhcCCcccccccc--CCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 345677 99999999999999999985321100000000 011111000 00112222211 22344567999999
Q ss_pred CCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
|||.+|..++.++++.+|++|||||+..|++.+|..+|.++...++|+|||+||+|+. ++++...+.+....+
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~-------~~~~~~~~~~i~~~l 153 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV-------GADLFKVLEDIEERF 153 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 344444444321110
Q ss_pred HH---------------------------------------------HHH----HHHHHHHHHHHHcC-Cchhhhhccc-
Q 000735 945 QN---------------------------------------------EFN----MRLVQIVTQLKEQG-MNTELYYKNK- 973 (1324)
Q Consensus 945 ~~---------------------------------------------ef~----~~l~~I~~~L~e~G-l~~e~~~~~~- 973 (1324)
.. .+. .....+...+.+.. -..+.|+.+.
T Consensus 154 ~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~ 233 (687)
T PRK13351 154 GKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEE 233 (687)
T ss_pred CCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCC
Confidence 00 000 00111111111110 0011122211
Q ss_pred --------------CCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh---------------hhhcccccceeEEEE
Q 000735 974 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------KLTFRNELQCTVLEV 1024 (1324)
Q Consensus 974 --------------~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e---------------~l~~~~~~~~~VlEv 1024 (1324)
..+..+|++.+||++|.||..||+.|+.+++.+..- ..+...++.+.|+.+
T Consensus 234 l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 234 LSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 124578999999999999999999999998776421 012345688999999
Q ss_pred EEEcCceeEEEEEEEeeeecCCCEEEEcccC
Q 000735 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1025 k~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1055 (1324)
...++.|.++.++|++|+|+.||.|.+.+.+
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~ 344 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG 344 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCC
Confidence 9999999999999999999999999887654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=269.06 Aligned_cols=240 Identities=23% Similarity=0.251 Sum_probs=166.8
Q ss_pred cccCCCCCEEEEEcCCCCCHHHHHHHHHcCccc--------cc----------ccCceeeeeeeeEeccccccchhhhcc
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ--------EG----------EAGGITQQIGATYFPAENIRERTRELK 849 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~--------~g----------e~gGITq~iga~~~~~e~i~~r~~~v~ 849 (1324)
.+.++|| |+|+||+|||||||+++|++..-. .+ ..+|||.+.....+.
T Consensus 6 ~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~------------ 71 (689)
T TIGR00484 6 DLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF------------ 71 (689)
T ss_pred ccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE------------
Confidence 4567887 999999999999999999742211 00 123444444444433
Q ss_pred ccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCC
Q 000735 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 850 ~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~ 929 (1324)
|+...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 72 ----~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~------ 141 (689)
T TIGR00484 72 ----WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG------ 141 (689)
T ss_pred ----ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 3446799999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CchHHHHHHHHhHHHH--------------------------------------------HHHHHHH----HHHHHHHHH
Q 000735 930 NAPIVKAIKQQNTDVQ--------------------------------------------NEFNMRL----VQIVTQLKE 961 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~--------------------------------------------~ef~~~l----~~I~~~L~e 961 (1324)
+++...+......+. .++...+ ..++..+.+
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 142 -ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred -CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 222222222111000 0000000 011111110
Q ss_pred ------------cCCchhhhhc----ccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh----------------
Q 000735 962 ------------QGMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------- 1009 (1324)
Q Consensus 962 ------------~Gl~~e~~~~----~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e---------------- 1009 (1324)
..+..+.++. ....+..+|++..||++|.||..||+.|+.+++.+...
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 300 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIER 300 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeee
Confidence 0011111100 00124678999999999999999999999998765321
Q ss_pred hhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEc
Q 000735 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1052 (1324)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1052 (1324)
......++.+.|+.+.+.+..|.+..++|++|+|+.||.|...
T Consensus 301 ~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 343 (689)
T TIGR00484 301 KASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNS 343 (689)
T ss_pred cCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeC
Confidence 0122456889999999999999999999999999999998754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=273.60 Aligned_cols=246 Identities=24% Similarity=0.280 Sum_probs=162.7
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccc-cccchhhhcccc---ccc----cCCCE
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAE-NIRERTRELKAN---ATL----KVPGL 859 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e-~i~~r~~~v~~~---~~~----~~~~I 859 (1324)
+.++|| |+|+||+|||||||+++|++.. +......| +.++..+. ..+.|.+++... ..| ....|
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAG-----EQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcC-----cceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 457888 9999999999999999998532 11100000 01111111 112233333221 112 23469
Q ss_pred EEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHH
Q 000735 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 860 ~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~ 939 (1324)
+|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.. +++...+.
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~~~~~~~~- 161 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------KELKLTPQ- 161 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------ccccCCHH-
Confidence 9999999999999999999999999999999999999999999998888999999999999862 22222211
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCCceeEEeCCCccCCChh------------------------
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP------------------------ 993 (1324)
Q Consensus 940 q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~--~~~~~~~g~~v~vVpvSA~tGeGI~------------------------ 993 (1324)
.++..|...+..+...+..+.- ..+ .|... ...-.+++.||+.|+|+.
T Consensus 162 ---~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~--~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 235 (731)
T PRK07560 162 ---EMQQRLLKIIKDVNKLIKGMAP-EEFKEKWKVD--VEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQK 235 (731)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhh-hhhhcceeec--CCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHH
Confidence 2223333322332222222110 011 01100 111246788999998886
Q ss_pred ----------hHHHHHHHHHHHhHHhh----------------------hhcccccceeEEEEEEEcCceeEEEEEEEee
Q 000735 994 ----------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041 (1324)
Q Consensus 994 ----------eLl~~L~~l~~~~m~e~----------------------l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G 1041 (1324)
.||+.|+.+++.+.... .+...++.+.|+.+...++.|.++.++|++|
T Consensus 236 ~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sG 315 (731)
T PRK07560 236 ELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSG 315 (731)
T ss_pred HHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEe
Confidence 67888888877664210 1223467889999999999999999999999
Q ss_pred eecCCCEEEEcccC
Q 000735 1042 VLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1042 ~Lk~GD~Ivv~g~~ 1055 (1324)
+|+.||.|.+++..
T Consensus 316 tL~~Gd~v~~~~~~ 329 (731)
T PRK07560 316 TLRKGQEVYLVGAK 329 (731)
T ss_pred EEcCCCEEEEcCCC
Confidence 99999999887654
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=261.05 Aligned_cols=297 Identities=20% Similarity=0.237 Sum_probs=184.3
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEecc-ccccchhhhccc---cccccCCCEEEEe
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPA-ENIRERTRELKA---NATLKVPGLLVID 863 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~-e~i~~r~~~v~~---~~~~~~~~I~IID 863 (1324)
..+|+ |+|+||+|||||||+++|+...-.....|.+.. .-..+...+ ...+.|.+.+.. .+.|....|+|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 45676 999999999999999999853211111111110 000000111 111233333322 2345567799999
Q ss_pred CCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
||||.+|...+.++++.+|++|||||+..|+..||..+|.++...++|+|||+||||+. ++++...+.+....
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~~~ 158 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIEEV 158 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 23333332221110
Q ss_pred HH----------------------------------------------------HHH-H-HHHHHHHHHH---HHcCCch
Q 000735 944 VQ----------------------------------------------------NEF-N-MRLVQIVTQL---KEQGMNT 966 (1324)
Q Consensus 944 v~----------------------------------------------------~ef-~-~~l~~I~~~L---~e~Gl~~ 966 (1324)
+. ..| . ..+..+...+ ...+..
T Consensus 159 l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~- 237 (526)
T PRK00741 159 LGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE- 237 (526)
T ss_pred hCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc-
Confidence 00 000 0 0000010000 000000
Q ss_pred hhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh-----hhh-cccccceeEEEEEE---EcCceeEEEEE
Q 000735 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLT-FRNELQCTVLEVKV---IEGHGTTIDVV 1037 (1324)
Q Consensus 967 e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e-----~l~-~~~~~~~~VlEvk~---i~G~Gtvi~~i 1037 (1324)
.....-.-+..+||++.||++|.||..||+.|+.+++.+... .+. ...++.+.|+.+.. .+.+|.+..++
T Consensus 238 -~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 238 -FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred -hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 000000125679999999999999999999999999866421 111 13457888888873 35789999999
Q ss_pred EEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeeccccccccCCCceE
Q 000735 1038 LVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1324)
Q Consensus 1038 V~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1324)
|++|+|+.|+.|....++.. .+|..++... +. ....|. +.+|-.+.+.++.....|++|.
T Consensus 317 V~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~--------g~--~~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTGKD--VRISNALTFM--------AQ--DREHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EeccEECCCCEEEeccCCce--EEecceEEEe--------cC--CceECceeCCCCEEEEECCCCCccCCCcc
Confidence 99999999999876544311 1121111000 00 011222 2357777888888888888875
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=252.05 Aligned_cols=295 Identities=17% Similarity=0.227 Sum_probs=183.1
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEeccc-cccchhhhccc---cccccCCCEEEEe
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAE-NIRERTRELKA---NATLKVPGLLVID 863 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~e-~i~~r~~~v~~---~~~~~~~~I~IID 863 (1324)
.++|+ |+|+||+|||||||+++|+...-.....|.+.-. ...+...+. ..+.|.+++.. .+.|....|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 34666 9999999999999999997532111111111000 000111111 11223333322 2345567799999
Q ss_pred CCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
||||.+|...+.++++.+|++|||||+..|+..+|..+|.+++..++|+|||+||||+.. +++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~-------~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI-------RDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC-------CCHHHHHHHHHHH
Confidence 999999999889999999999999999999999999999999999999999999999852 2222222111100
Q ss_pred HHH---------------------------HH---------------------------HHHHHHHH---HHHHHc--CC
Q 000735 944 VQN---------------------------EF---------------------------NMRLVQIV---TQLKEQ--GM 964 (1324)
Q Consensus 944 v~~---------------------------ef---------------------------~~~l~~I~---~~L~e~--Gl 964 (1324)
+.. .| ...+...+ ..+.+. .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 000 00 00000000 001110 01
Q ss_pred chhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhh-----hh-cccccceeEEEEEE--E-cCceeEEE
Q 000735 965 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1035 (1324)
Q Consensus 965 ~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~-----l~-~~~~~~~~VlEvk~--i-~G~Gtvi~ 1035 (1324)
....+ .-+..+|+++.||+++.||..||+.|+.+++.+.... +. ...++.+.|+.+.. . +.+|.+..
T Consensus 240 ~~~~~----~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAAF----HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHHH----hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 11111 1356789999999999999999999999998664211 11 13468899999876 5 47899999
Q ss_pred EEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeeccccccccCCCceE
Q 000735 1036 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1324)
Q Consensus 1036 ~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1324)
++|++|+|+.|+.|....++.. -+|..++...... ...|. +.+|-.+.+.++.....|++|.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~~----------~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGKD--VVISDALTFMAGD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCCc--EEecchhhhhcCC----------ceEcceeCCCCEEEEECCCCcccCCEec
Confidence 9999999999999876543311 1222222111111 11222 2356667777887777888774
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=231.16 Aligned_cols=242 Identities=25% Similarity=0.329 Sum_probs=177.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-------ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~-------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG 866 (1324)
+.+|+|+||+|+|||||..+|.... ......+|||.++|...+....-.. +... ..-+++|||+||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~---e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQG---EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCcc---ccceeEEEeCCC
Confidence 3569999999999999999997421 2234558999999977665432110 0000 113589999999
Q ss_pred CcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
|.+.......|+...|++|||||+..|.++||.++|-+........|||+||||.+.. ......+..
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE------~qr~ski~k------- 146 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE------NQRASKIEK------- 146 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc------hhhhhHHHH-------
Confidence 9999999999999999999999999999999999998888777789999999998732 111111111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccC----CChhhHHHHHHHHHHHhHHhhhhcccccceeEE
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL 1022 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tG----eGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~Vl 1022 (1324)
.-..+..-|... .++++.|||++||..| ++|++|...|-..+ ....-+...||.+.|.
T Consensus 147 ----~~kk~~KtLe~t-----------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i---f~P~Rd~~gpflm~vD 208 (522)
T KOG0461|consen 147 ----SAKKVRKTLEST-----------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI---FEPKRDEEGPFLMAVD 208 (522)
T ss_pred ----HHHHHHHHHHhc-----------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh---cCCCcCCCCCeEEEee
Confidence 111222233333 4568899999999999 77777777664332 1223456778999999
Q ss_pred EEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc
Q 000735 1023 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1324)
Q Consensus 1023 Evk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa 1089 (1324)
.+|.++|.|||++|.|.+|.|+.|+.|-+...+ ...+|+++++++..|..+
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 999999999999999999999999998874221 223578888888777654
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=246.82 Aligned_cols=238 Identities=26% Similarity=0.349 Sum_probs=166.8
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCc--------cc----------ccccCceeeeeeeeEeccccccchhhhcccc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~--------v~----------~ge~gGITq~iga~~~~~e~i~~r~~~v~~~ 851 (1324)
..+|| |+|+.|.|+|||||..++++.. +. ....+|||.+.+++++.|..
T Consensus 37 ~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~----------- 103 (721)
T KOG0465|consen 37 NKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD----------- 103 (721)
T ss_pred hhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc-----------
Confidence 46788 9999999999999999987521 11 11236777777777777653
Q ss_pred ccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCc
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 852 ~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a 931 (1324)
+.|+|||||||.+|+-.+.|.+++.|+||||+++..|++.||...|++++.+++|.|++|||||+.+ +
T Consensus 104 -----~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG-------a 171 (721)
T KOG0465|consen 104 -----YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG-------A 171 (721)
T ss_pred -----ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcC-------C
Confidence 5699999999999999999999999999999999999999999999999999999999999999974 4
Q ss_pred hHHHHHHHHhH------------------------------------------------HHHHHHHHHHHHHHHHHHHcC
Q 000735 932 PIVKAIKQQNT------------------------------------------------DVQNEFNMRLVQIVTQLKEQG 963 (1324)
Q Consensus 932 ~~~~~L~~q~~------------------------------------------------~v~~ef~~~l~~I~~~L~e~G 963 (1324)
++..+|.+... ++...+...-..++..|....
T Consensus 172 ~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~D 251 (721)
T KOG0465|consen 172 SPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVD 251 (721)
T ss_pred ChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444443321 111111111111111111100
Q ss_pred C-chhhhhcccC---------------CCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh---hhh------------
Q 000735 964 M-NTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT------------ 1012 (1324)
Q Consensus 964 l-~~e~~~~~~~---------------~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e---~l~------------ 1012 (1324)
- -.+.|.++.. -+.++||+..||+.+.||.-||+.++.+++.+..- .+.
T Consensus 252 E~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~ 331 (721)
T KOG0465|consen 252 ETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLS 331 (721)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEec
Confidence 0 0122222221 25679999999999999999999999998754311 111
Q ss_pred --c-ccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcc
Q 000735 1013 --F-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1324)
Q Consensus 1013 --~-~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g 1053 (1324)
. .+||.+..+.+...+ .|....++|++|+|+.||+|+-.-
T Consensus 332 ~~~d~~Pfv~LAFKle~g~-fGqLTyvRvYqG~L~kG~~iyN~r 374 (721)
T KOG0465|consen 332 PSRDKDPFVALAFKLEEGR-FGQLTYVRVYQGTLSKGDTIYNVR 374 (721)
T ss_pred cCCCCCceeeeEEEeeecC-ccceEEEEEeeeeecCCcEEEecC
Confidence 1 124444444443333 389999999999999999987543
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-24 Score=240.93 Aligned_cols=281 Identities=18% Similarity=0.281 Sum_probs=192.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--------------cCceeeeeeeeEeccccccchhhhccc------cccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKA------NATL 854 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge--------------~gGITq~iga~~~~~e~i~~r~~~v~~------~~~~ 854 (1324)
..|+|+|+||+||||||+.|++....+|. ..|.|..+|...+-++... ..++. ...|
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~G---NvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHG---NVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeecccc---ccccCCCCCCCcccc
Confidence 34999999999999999999877665543 2344544444333322111 01110 1111
Q ss_pred c------CCCEEEEeCCCCcchhhhhhhccC--cccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcc
Q 000735 855 K------VPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1324)
Q Consensus 855 ~------~~~I~IIDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~ 926 (1324)
. ..-|+|||..||+.|...+..|+. ..|+.+|+|.++.|+-..|.+||.++..+.+|++||++|||.|+
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP--- 287 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP--- 287 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc---
Confidence 1 123999999999999988877765 58999999999999999999999999999999999999999973
Q ss_pred cCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhh-hhcc--------cCC--CCceeEEeCCCccCCChhhH
Q 000735 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL-YYKN--------KDR--GETFNIVPTSAISGEGIPDL 995 (1324)
Q Consensus 927 ~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~-~~~~--------~~~--g~~v~vVpvSA~tGeGI~eL 995 (1324)
+++.. +.+.-+...|...|+..-. ...+ .+| .+.||||.+|.+||.|++-|
T Consensus 288 ----ANiLq--------------EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 288 ----ANILQ--------------ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred ----HHHHH--------------HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 33321 1122233344444432110 0011 112 35689999999999999655
Q ss_pred HHHHHHHHHHhHHhhhhcccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceee
Q 000735 996 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR 1075 (1324)
Q Consensus 996 l~~L~~l~~~~m~e~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~r 1075 (1324)
..+| .++... ..+..+.|..+.|.++|+++|+|+++.+.+.+|+|+.+|++++++... +.+-.+.
T Consensus 350 kmFL-Nlls~R--~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~------------G~F~pI~ 414 (641)
T KOG0463|consen 350 KMFL-NLLSLR--RQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSN------------GDFMPIP 414 (641)
T ss_pred HHHH-hhcCcc--cccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCC------------CCeeeee
Confidence 5554 444332 235567889999999999999999999999999999999998865431 1112233
Q ss_pred eccee---ecccccccccceeeeccccccccCCCceEEeCCC
Q 000735 1076 VKGTY---LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1076 Vk~~~---~~~k~v~aa~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
|+++. +....|+.++...+++.-+.+.....+|++|.+.
T Consensus 415 iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 415 IKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred hhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 44442 4445666777777777777777777888877654
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=227.10 Aligned_cols=154 Identities=28% Similarity=0.344 Sum_probs=117.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc----------------cccCceeeeeeeeEeccccccchhhhccccccccCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE----------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~----------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~ 858 (1324)
.+|+|+||+|||||||+++|++..... ...+|+|.+.....+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 469999999999999999998642111 12355665554444432 2356
Q ss_pred EEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccCcccCCCchHHHHH
Q 000735 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 859 I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||+.. ...+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHHH----
Confidence 99999999999999999999999999999999999999999999999999998 789999999852 1111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhh
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~e 994 (1324)
+......+...|...|++. ..++|||+||++|.|+.+
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112234666677777642 358999999999999753
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=250.98 Aligned_cols=247 Identities=25% Similarity=0.265 Sum_probs=159.4
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecc-ccccchhhhccc---cccccCCCEEEEeCCCCcchhhhhh
Q 000735 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA-ENIRERTRELKA---NATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 800 lGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~-e~i~~r~~~v~~---~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
|||+|||||||+++|++..-.....+.+ +.+.+...+ ...+.+++++.. ...|....|+|||||||.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~--~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEV--EDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccc--cCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 6999999999999997532110000000 001111111 111122222221 1234456799999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHH----------
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ---------- 945 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~---------- 945 (1324)
+++..+|++|||||+..|+..++..+|..+...++|+|||+||+|+.. ..+...+......+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHHHHHCCCceeEEecc
Confidence 999999999999999999999999999999999999999999999862 222222221111000
Q ss_pred --------------------------------HHHH----HHHHHHHHHHHHcC-Cchhhhhccc---------------
Q 000735 946 --------------------------------NEFN----MRLVQIVTQLKEQG-MNTELYYKNK--------------- 973 (1324)
Q Consensus 946 --------------------------------~ef~----~~l~~I~~~L~e~G-l~~e~~~~~~--------------- 973 (1324)
..+. .....++..+.+.. -..+.|+.+.
T Consensus 152 ~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~ 231 (668)
T PRK12740 152 GEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKAT 231 (668)
T ss_pred cCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 0000 00011111111110 0000111110
Q ss_pred CCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh--------------hhhcccccceeEEEEEEEcCceeEEEEEEE
Q 000735 974 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVKVIEGHGTTIDVVLV 1039 (1324)
Q Consensus 974 ~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e--------------~l~~~~~~~~~VlEvk~i~G~Gtvi~~iV~ 1039 (1324)
..+..+|++.+||++|.||..||+.|+.+++.+..- ..+...++.+.|+.+++.++.|.++.++|+
T Consensus 232 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~ 311 (668)
T PRK12740 232 LAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVY 311 (668)
T ss_pred HcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEe
Confidence 124578999999999999999999999998766421 113345688999999999999999999999
Q ss_pred eeeecCCCEEEEcccC
Q 000735 1040 NGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1040 ~G~Lk~GD~Ivv~g~~ 1055 (1324)
+|+|+.||.|.+++..
T Consensus 312 sG~L~~g~~v~~~~~~ 327 (668)
T PRK12740 312 SGTLKKGDTLYNSGTG 327 (668)
T ss_pred eeEEcCCCEEEeCCCC
Confidence 9999999999877643
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-23 Score=225.66 Aligned_cols=224 Identities=27% Similarity=0.300 Sum_probs=165.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccccc----hhhhcc-----cccc-ccCCCEE
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE----RTRELK-----ANAT-LKVPGLL 860 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~~----r~~~v~-----~~~~-~~~~~I~ 860 (1324)
..+|+++||||||||||+.+|.+.. +...-.+|||+.+|....++....+ .+.... +... --.+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 3569999999999999999998643 3334458899998864433221100 000000 0000 1124699
Q ss_pred EEeCCCCcchhhhhhhccCcccceEEeeccccC-CcHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHHHH
Q 000735 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 861 IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~L~ 938 (1324)
|+|+|||+-+...+..|+.+.|+|||||+++.. .+|||.|||..|.-.++ .+||+-||||++.. .++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A-- 158 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA-- 158 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH--
Confidence 999999999999999999999999999999975 68999999999998885 68899999999720 111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccc
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1324)
Q Consensus 939 ~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~ 1018 (1324)
-+.+.+|..++.. .+..+.|+||+||..+.||+-|+++|..+++.+.. +...++.
T Consensus 159 ----------lE~y~qIk~FvkG------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r---d~~~~p~ 213 (415)
T COG5257 159 ----------LENYEQIKEFVKG------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPER---DLDKPPR 213 (415)
T ss_pred ----------HHHHHHHHHHhcc------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc---CCCCCce
Confidence 1223344443321 23456899999999999999999999988876533 3566788
Q ss_pred eeEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcc
Q 000735 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1324)
Q Consensus 1019 ~~VlEvk~i~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g 1053 (1324)
+.|+.+|.+.- .|-|+.|.|.+|.|+.||.|-+-+
T Consensus 214 m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 214 MYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 99999997743 577888999999999999997654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=257.94 Aligned_cols=238 Identities=21% Similarity=0.232 Sum_probs=152.0
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCccc-cc---------------ccCceeeeeeeeEeccccccchhhhccccc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EG---------------EAGGITQQIGATYFPAENIRERTRELKANA 852 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~-~g---------------e~gGITq~iga~~~~~e~i~~r~~~v~~~~ 852 (1324)
+..+|+ |+|+||+|||||||+++|+...-. .. ..+|||.+.....+.+ ..
T Consensus 16 ~~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~ 81 (720)
T TIGR00490 16 PKFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EY 81 (720)
T ss_pred cccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------ee
Confidence 345777 999999999999999999853110 00 0122222221111100 12
Q ss_pred cccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCch
Q 000735 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1324)
.+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+... +
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-------~ 154 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN-------E 154 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc-------h
Confidence 344567999999999999999999999999999999999999999999999998899999999999999632 2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCCceeEEeCCCccCCC------------------
Q 000735 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------ 991 (1324)
Q Consensus 933 ~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~---~~~~~~~g~~v~vVpvSA~tGeG------------------ 991 (1324)
+...+ ..++..|...+..+...+... +.... |.... ....++++|++.+++
T Consensus 155 ~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~ 226 (720)
T TIGR00490 155 LKLTP----QELQERFIKIITEVNKLIKAM-APEEFRDKWKVRV---EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYK 226 (720)
T ss_pred hcCCH----HHHHHHHhhhhHHHHhhhhcc-CCHHHhhceEech---hhCCHHHHhhhhcccccchhHhhcCCCHHHHHH
Confidence 22221 223333433333333333221 00000 00000 000112222222211
Q ss_pred ----------------hhhHHHHHHHHHHHhHHh---h-------------------hhcccccceeEEEEEEEcCceeE
Q 000735 992 ----------------IPDLLLLLVQWTQKTMVE---K-------------------LTFRNELQCTVLEVKVIEGHGTT 1033 (1324)
Q Consensus 992 ----------------I~eLl~~L~~l~~~~m~e---~-------------------l~~~~~~~~~VlEvk~i~G~Gtv 1033 (1324)
+..||+.|+.+++.+..- + .+...++.+.|+.+...++.|++
T Consensus 227 ~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i 306 (720)
T TIGR00490 227 YCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV 306 (720)
T ss_pred HHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE
Confidence 345677777776655310 0 01234678899999999999999
Q ss_pred EEEEEEeeeecCCCEEEEcccC
Q 000735 1034 IDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 1034 i~~iV~~G~Lk~GD~Ivv~g~~ 1055 (1324)
+.++|++|+|+.||.|++++.+
T Consensus 307 a~~RV~sGtL~~G~~l~~~~~~ 328 (720)
T TIGR00490 307 AVGRLYSGTIRPGMEVYIVDRK 328 (720)
T ss_pred EEEEEEeCEEcCCCEEEEcCCC
Confidence 9999999999999999887654
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=239.15 Aligned_cols=194 Identities=25% Similarity=0.326 Sum_probs=143.8
Q ss_pred CCCchhhhhhcccCCCCCcccCCchhhccccCCCCCCCch--hhhhhccchhhhcCCCcccCCCC------ccccCCCCC
Q 000735 724 EPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQ--DAVTRKKEPAAKSKEPEVDATPK------QAEENLRSP 795 (1324)
Q Consensus 724 e~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~R~p 795 (1324)
..+.++.+++|+|||+++++||..+++.++++++||+.++ .+.+.++++...+..+...+... .++..+|+
T Consensus 52 ~~~~vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irn- 130 (971)
T KOG0468|consen 52 PQNAVVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRN- 130 (971)
T ss_pred ccceeeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEE-
Confidence 3466789999999999999999999999999999999888 45555555555444444333322 34455666
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeee-eeeEeccccccchhhhccc--------cccccCCCEEEEeCCC
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELKA--------NATLKVPGLLVIDTPG 866 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~i-ga~~~~~e~i~~r~~~v~~--------~~~~~~~~I~IIDTPG 866 (1324)
|+++||..||||+|+++|............ -.++ ......++ .+|+..++. +..-+.+-++|+||||
T Consensus 131 -V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-e~~lrytD~l~~E--~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 131 -VGLVGHLHHGKTALMDLLVEQTHPDFSKNT-EADLRYTDTLFYE--QERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred -EEEeeccccChhHHHHhhceeccccccccc-cccccccccchhh--HhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 999999999999999999865543321110 0000 11111111 122222221 1223345699999999
Q ss_pred CcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
|.+|+..+.++++.+|++|||||+.+|++.+|...|+++...++|++|||||||++
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 99999999999999999999999999999999999999999999999999999985
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=255.20 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=97.4
Q ss_pred cccCCCCCEEEEEcCCCCCHHHHHHHHHcCcc--c--------------ccccCceeeeeeeeEeccccccchhhhcccc
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v--~--------------~ge~gGITq~iga~~~~~e~i~~r~~~v~~~ 851 (1324)
++.++|| |||+||+|||||||+++|++..- . ....+|||...+...+.|.............
T Consensus 15 ~~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 4567888 99999999999999999985431 1 1112444444433333332100000000000
Q ss_pred ccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 852 ~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.....+.|+|||||||.+|...+.++++.||++|||||+..|++.||..+|+++...++|+||++||||++
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 01123468999999999999999999999999999999999999999999999999999999999999997
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=206.27 Aligned_cols=165 Identities=55% Similarity=0.822 Sum_probs=128.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6899999999999999999998888777777889888766665431 012459999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~ 954 (1324)
.+++..+|++|+|||++++...++.+++.++...++|+|||+||+|+... .. . .
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~-~------------------~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NP-E------------------R 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cH-H------------------H
Confidence 99999999999999999999999999999999899999999999998521 00 0 0
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 955 I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+...+..++... + ..++..++++++||++|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111111111100 0 0123457999999999999999999997654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=222.81 Aligned_cols=283 Identities=20% Similarity=0.285 Sum_probs=192.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhcccc----------cc------------
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN----------AT------------ 853 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~----------~~------------ 853 (1324)
.|+|+|.+|+||||||+.|++....+|..+. .++.+.++.+....++..+... ++
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrA---Rln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRA---RLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCee---eeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3899999999999999999987766654221 2233333333222222222110 00
Q ss_pred ccCCCEEEEeCCCCcchhhhhhhccCc--ccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCc
Q 000735 854 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 854 ~~~~~I~IIDTPGHe~F~~~r~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a 931 (1324)
-...-++|||..||..|...+..|+.. .|+++|||+++.|+...|++||.++.++++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112359999999999999988888765 7999999999999999999999999999999999999999972 22
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-cc----------cCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY-KN----------KDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 932 ~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~-~~----------~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
.+... +.++.+.|...|+....+. .+ --.+..+|||.+|+++|+|+.-|..+|.
T Consensus 320 ~~~~t---------------v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 320 GLKKT---------------VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred hHHHH---------------HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 22222 2333344444444211110 00 1135678999999999999965554443
Q ss_pred HHHHHh-HHhhhhc-ccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecc
Q 000735 1001 QWTQKT-MVEKLTF-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1324)
Q Consensus 1001 ~l~~~~-m~e~l~~-~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~ 1078 (1324)
-+.+.. -.++... ..+..++|.|+|.++.+|+++.|+|..|.|++|+.++++++. .+.+..++|.+
T Consensus 385 ~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~------------DG~F~~itV~s 452 (591)
T KOG1143|consen 385 CLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMK------------DGTFEKITVGS 452 (591)
T ss_pred hcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCC------------CCceeEEEeee
Confidence 222111 1111111 235678999999999999999999999999999999986653 33345566666
Q ss_pred eeecc---cccccccceeeeccccccccCCCceEEeCCC
Q 000735 1079 TYLHH---KQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1079 ~~~~~---k~v~aa~gv~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
+.... .-+.+++...+++...+.+...++|+++.++
T Consensus 453 I~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 453 IRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 65443 2356777778888877778888888887654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=222.74 Aligned_cols=248 Identities=20% Similarity=0.276 Sum_probs=167.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCcee---eeeeeeEeccccccchhhhccc---cccccCCCEEEEeCCCCcc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT---QQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGIT---q~iga~~~~~e~i~~r~~~v~~---~~~~~~~~I~IIDTPGHe~ 869 (1324)
..+||-|+|+|||||...|+.-.-....+|.+. ....+++.-.+..++|++.|.. .+.|....|+|+|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 499999999999999999974322222222211 1112222222223455555544 3456677899999999999
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH------
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD------ 943 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~------ 943 (1324)
|+.-+.|.+..+|.||+|||+..|+++||+..+..|+.+++|||-+|||+|+.. .+..+.|.+.-..
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~-------rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG-------RDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc-------CChHHHHHHHHHHhCccee
Confidence 999999999999999999999999999999999999999999999999999852 2222322221000
Q ss_pred -----------------------------------------------HHHHHHHH-HHHHHHHH---HH--cCCchhhhh
Q 000735 944 -----------------------------------------------VQNEFNMR-LVQIVTQL---KE--QGMNTELYY 970 (1324)
Q Consensus 944 -----------------------------------------------v~~ef~~~-l~~I~~~L---~e--~Gl~~e~~~ 970 (1324)
+-..+... ...+...+ .. .-+..+.|.
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl 246 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL 246 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh
Confidence 00000000 01111111 11 112222222
Q ss_pred cccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhh-----c-ccccceeEEEEEEE---cCceeEEEEEEEee
Q 000735 971 KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVNG 1041 (1324)
Q Consensus 971 ~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~-----~-~~~~~~~VlEvk~i---~G~Gtvi~~iV~~G 1041 (1324)
-|...|||..||+++-||..+|+.++.|.+.+...... + .+.+.+.|+.+..- ..+-.++..+|.+|
T Consensus 247 ----~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SG 322 (528)
T COG4108 247 ----AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSG 322 (528)
T ss_pred ----cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccc
Confidence 25678999999999999999999999999876544322 1 33478888887632 35677888999999
Q ss_pred eecCCCEEEEccc
Q 000735 1042 VLHEGDQIVVCGL 1054 (1324)
Q Consensus 1042 ~Lk~GD~Ivv~g~ 1054 (1324)
.+..|+.+...-+
T Consensus 323 kferGMkv~h~rt 335 (528)
T COG4108 323 KFERGMKVTHVRT 335 (528)
T ss_pred cccCCceeeeeec
Confidence 9999998876543
|
|
| >PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=196.55 Aligned_cols=92 Identities=38% Similarity=0.601 Sum_probs=82.3
Q ss_pred ccCCceEEEeCCcccHHHHHHHhc---cCCceeeEEEeeeCccccchHHHHHhhhcccccCcEEEEeCCCCCHHHHHHHH
Q 000735 1137 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1213 (1324)
Q Consensus 1137 ~~~~~vivkadt~GSlEAl~~~L~---~~~~~i~v~~~~vG~v~~~DV~~A~~~~~~~~~~a~Il~Fnvkv~~~a~~~A~ 1213 (1324)
....+|||||||+||||||+.+|. +++++++|+++||||||++||++|++ .+|+||||||++++.+..+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~------~~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASA------SNAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHH------HC-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHh------hCCEEEEeeCCCCHHHHHHHH
Confidence 456799999999999999999875 46799999999999999999999998 479999999999999999999
Q ss_pred HhCCeEEEcchHHHHHHHHHH
Q 000735 1214 ELGVKIFIADIIYHLFDQFTA 1234 (1324)
Q Consensus 1214 ~~gV~I~~~~IIY~L~d~~~~ 1234 (1324)
++||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
|
IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=215.11 Aligned_cols=185 Identities=23% Similarity=0.265 Sum_probs=123.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc--------------CceeeeeeeeEecccccc---c--hhhhcc---ccccc
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIR---E--RTRELK---ANATL 854 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~--------------gGITq~iga~~~~~e~i~---~--r~~~v~---~~~~~ 854 (1324)
|+|+||+++|||||+++|....+..+.. .|+|..+....+.+.... . ...... .....
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 7899999999999999999755543321 344433222122111100 0 000000 00112
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccC--cccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCch
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1324)
....|+|||||||..|...+.+++. .+|++|||||+.+|+++++.+++.++...++|+|||+||+|+.. ...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~~ 155 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------ANI 155 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HHH
Confidence 3457999999999999998888875 79999999999999999999999999999999999999999852 111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchh-----------hhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-----------LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 933 ~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e-----------~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
+...+..+...|...|+..- ....+..++..+|+|++||+||.||+.|+.+|..
T Consensus 156 ---------------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 ---------------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ---------------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11222233333433332211 1112234567789999999999999999988864
Q ss_pred H
Q 000735 1002 W 1002 (1324)
Q Consensus 1002 l 1002 (1324)
+
T Consensus 221 l 221 (224)
T cd04165 221 L 221 (224)
T ss_pred c
Confidence 3
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-22 Score=214.60 Aligned_cols=172 Identities=26% Similarity=0.383 Sum_probs=121.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeeeeeeeEeccccccchh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRERT 845 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~g-------------------------------e~gGITq~iga~~~~~e~i~~r~ 845 (1324)
|+|+||+|||||||+++|++..-... ..+|+|.++...++
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--------- 72 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF--------- 72 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE---------
Confidence 89999999999999999985321100 01233333322222
Q ss_pred hhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccccC
Q 000735 846 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYG 924 (1324)
Q Consensus 846 ~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~~~ 924 (1324)
.+....|+|||||||..|...+..++..+|++|||||+..|+..++..++.++...++| +|||+||||+..
T Consensus 73 -------~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~- 144 (208)
T cd04166 73 -------STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD- 144 (208)
T ss_pred -------ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-
Confidence 23456799999999999988888899999999999999999999999998888888865 677999999862
Q ss_pred cccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 925 w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
|. .. .+......+...+...|+ ..+++|+|||++|.||.+....+.|+..
T Consensus 145 ~~----~~--------------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~g 194 (208)
T cd04166 145 YS----EE--------------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYSG 194 (208)
T ss_pred CC----HH--------------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCCC
Confidence 21 00 011112223333334443 1358999999999999988766666667
Q ss_pred HhHHhhhhccc
Q 000735 1005 KTMVEKLTFRN 1015 (1324)
Q Consensus 1005 ~~m~e~l~~~~ 1015 (1324)
+++++.++...
T Consensus 195 ~~~~~~~~~~~ 205 (208)
T cd04166 195 PTLLEHLETVP 205 (208)
T ss_pred CcHHHHHhcCC
Confidence 77877766443
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=217.47 Aligned_cols=125 Identities=30% Similarity=0.324 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccc-cccchhhhccc---cccccCCCEEEEeCCCCcchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e-~i~~r~~~v~~---~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
+|+|+||+|||||||+++|++..-.....+.++ . +.+...+. ..+.+..++.. .+.|....|+|||||||.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~-~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVH-G-GGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccccc-C-CccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH
Confidence 389999999999999999985321111111010 0 11111111 01122222221 223455679999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=243.75 Aligned_cols=126 Identities=26% Similarity=0.319 Sum_probs=95.8
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccccchhhhccccc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~ 852 (1324)
+..+|| |||+||+|||||||+++|++..-. ....+|||.+.+...+.+..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 466887 999999999999999999863210 11123444444433333321000 000
Q ss_pred cccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
....+.|+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0113459999999999999999999999999999999999999999999999999999999999999996
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=209.37 Aligned_cols=176 Identities=25% Similarity=0.252 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEecccccc-chhhhcc--------cc--------cccc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR-ERTRELK--------AN--------ATLK 855 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~-~r~~~v~--------~~--------~~~~ 855 (1324)
+|+|+||+|||||||+.+|.... .......|+|..++...+.+.... .++.... .. ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 59999999999999999998652 233445678888777666543110 0000000 00 0011
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-CcHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchH
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 933 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~ 933 (1324)
...|+|||||||..|...+.+++..+|++|||||+.++ +.++|.++|..+...++ |+|||+||+|+... ..+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~------~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE------EQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH------HHH
Confidence 25699999999999999999999999999999999984 78899999988877776 69999999998621 111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 934 ~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+..+...+..+. ...+++|++||++|.||.+|+.+|...++
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 111122222222111 12468999999999999999999876553
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=214.94 Aligned_cols=174 Identities=25% Similarity=0.370 Sum_probs=119.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-------------------------------cccCceeeeeeeeEeccccccch
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-------------------------------GEAGGITQQIGATYFPAENIRER 844 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~-------------------------------ge~gGITq~iga~~~~~e~i~~r 844 (1324)
+|+|+||+|||||||+++|+...-.. ...+|+|.++....+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~-------- 72 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-------- 72 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE--------
Confidence 38999999999999999997431100 011233333332222
Q ss_pred hhhccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeecccc-------CCcHHHHHHHHHHHhcC-CcEEEEe
Q 000735 845 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 916 (1324)
Q Consensus 845 ~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~-------Gv~~QT~E~l~ll~~~~-vP~IVaI 916 (1324)
.+..+.|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++...+ .|+|||+
T Consensus 73 --------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 73 --------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred --------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 3445679999999999999999999999999999999998 57789999998888777 5899999
Q ss_pred ecccccc-CcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhH
Q 000735 917 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1324)
Q Consensus 917 NKiDl~~-~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eL 995 (1324)
||||++. .|.. . .|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~~---~---------------~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWSE---E---------------RYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred EccccccccccH---H---------------HHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999862 1210 0 1111222333334444432 13579999999999999855
Q ss_pred HHHHHHHHHHhHHhhhhc
Q 000735 996 LLLLVQWTQKTMVEKLTF 1013 (1324)
Q Consensus 996 l~~L~~l~~~~m~e~l~~ 1013 (1324)
-..+-|+....+++.+..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 444444445566665554
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=195.09 Aligned_cols=158 Identities=33% Similarity=0.463 Sum_probs=115.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+|+|+|++++|||||+++|++.. +......++|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 69999999999999999998643 2222335667666554443220 23599999999999988
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC-cEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+..+++.+|++|||+|++++..+++.+.+..+...+. |+|||+||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999998999998887777776 99999999998521 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+...++ ..++++++||++|.||.+|+..|..
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1222223322211 2368999999999999999988753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-21 Score=203.92 Aligned_cols=180 Identities=26% Similarity=0.372 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-------cccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t-------~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe 868 (1324)
+|+|+||+|||||||+++|+.. .......+|+|.+++...+.+.....+ ............|+|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL--RELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc--cccccccccCceEEEEECCCcH
Confidence 5999999999999999999862 122233567888877655544311000 0000011223579999999999
Q ss_pred chhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
.|.....+++..+|++|+|||+.+|...++.+++.++...++|+|||+||+|+... ..+...+. .+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHHH-
Confidence 99888888888999999999999999999988888777788999999999998621 11111111 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111222121 236899999999999999999998776544
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=213.24 Aligned_cols=197 Identities=26% Similarity=0.308 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccc-ccchhhhccc---cccccCCCEEEEeCCCCcchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~-i~~r~~~v~~---~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
+|+|+||+|+|||||+++|++........|.+. -+.++..+.. .+.+..++.. ...|....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986432211111111 1111111111 1122222211 223455679999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+.++++.+|++|||||+.+|+..+|..+|.++...++|+|||+||||+. ++++...+.+... .|...
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i~~----~~~~~ 147 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEIKE----KLSSD 147 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHHHH----HHCCC
Confidence 999999999999999999999999999999999999999999999999986 3444444443221 12110
Q ss_pred -------------------HHHHHHHHHHcCC-chhhhhcccC---------------CCCceeEEeCCCccCCChhhHH
Q 000735 952 -------------------LVQIVTQLKEQGM-NTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLL 996 (1324)
Q Consensus 952 -------------------l~~I~~~L~e~Gl-~~e~~~~~~~---------------~g~~v~vVpvSA~tGeGI~eLl 996 (1324)
...++..+.+..= -.+.|++... -+..+|+++.||.++.|+..||
T Consensus 148 ~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll 227 (237)
T cd04168 148 IVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELL 227 (237)
T ss_pred eEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHH
Confidence 0111111111100 0112222211 3578999999999999999999
Q ss_pred HHHHHHHHH
Q 000735 997 LLLVQWTQK 1005 (1324)
Q Consensus 997 ~~L~~l~~~ 1005 (1324)
+.|..+++.
T Consensus 228 ~~~~~~~p~ 236 (237)
T cd04168 228 EGITKLFPT 236 (237)
T ss_pred HHHHHhcCC
Confidence 999987753
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=220.43 Aligned_cols=285 Identities=25% Similarity=0.314 Sum_probs=187.4
Q ss_pred CCccccCCCCCEEEEEcCCCCCHHHHHHHHHcC--------ccccc----------ccCceeeeeeeeEeccccccchhh
Q 000735 785 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGT--------NVQEG----------EAGGITQQIGATYFPAENIRERTR 846 (1324)
Q Consensus 785 ~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~t--------~v~~g----------e~gGITq~iga~~~~~e~i~~r~~ 846 (1324)
+......+|| |+||.|+|+||||...+|++- .|..| +.+|||.|..+..|.
T Consensus 30 ~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd--------- 98 (753)
T KOG0464|consen 30 INPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD--------- 98 (753)
T ss_pred CCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc---------
Confidence 3444567888 999999999999999999852 22222 236666666666554
Q ss_pred hccccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcc
Q 000735 847 ELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1324)
Q Consensus 847 ~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~ 926 (1324)
|+++.|++||||||.+|+-.+.|++++.|++|.|+|++.|+++||+..|++....++|.+++|||||.+.
T Consensus 99 -------wkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~--- 168 (753)
T KOG0464|consen 99 -------WKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLA--- 168 (753)
T ss_pred -------cccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhh---
Confidence 5556799999999999999999999999999999999999999999999999999999999999999863
Q ss_pred cCCCchHHHHHHH-------------------------------------------------------------------
Q 000735 927 TCRNAPIVKAIKQ------------------------------------------------------------------- 939 (1324)
Q Consensus 927 ~~~~a~~~~~L~~------------------------------------------------------------------- 939 (1324)
++|..++..
T Consensus 169 ----anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~ 244 (753)
T KOG0464|consen 169 ----ANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEA 244 (753)
T ss_pred ----hhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHH
Confidence 222222111
Q ss_pred ------HhHHHHHHHHHHHHHHHHHHHHcCCchhhhh---------cccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 940 ------QNTDVQNEFNMRLVQIVTQLKEQGMNTELYY---------KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 940 ------q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~---------~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
|+.++-.+|.. .+...|.+ |.+... +..--...+|+...||+++.||..|++.+.-+++
T Consensus 245 knal~~qlad~~~dfad---~~ldef~~---n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylp 318 (753)
T KOG0464|consen 245 KNALCEQLADLDADFAD---KFLDEFDE---NFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLP 318 (753)
T ss_pred HHHHHHHHhhccHHHHH---HHHHHhhc---cccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccC
Confidence 11111111110 01111110 000000 0000124578999999999999999999877776
Q ss_pred HhHHhh---hh-cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeeccee
Q 000735 1005 KTMVEK---LT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTY 1080 (1324)
Q Consensus 1005 ~~m~e~---l~-~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~ 1080 (1324)
.+-... +. |.+.+.+.-+.|-..+.+|+....++++|+|+..-.|.- .+|-....|-.||.|-.-.
T Consensus 319 speernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~n--in~~~se~~~kl~~pfade-------- 388 (753)
T KOG0464|consen 319 SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFN--INGMCSEGILKLFLPFADE-------- 388 (753)
T ss_pred ChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeee--cccccccchHhhhccchhh--------
Confidence 432221 11 345556666666778899999999999999998876543 2333333445555553211
Q ss_pred eccccccc-ccceeeeccccccccCCCceEEeC
Q 000735 1081 LHHKQIKA-AQGIKITAQGLEHAIAGTGLYVVG 1112 (1324)
Q Consensus 1081 ~~~k~v~a-a~gv~i~~~gL~~~~aG~~l~v~~ 1112 (1324)
|..|.. ..|......||.+...|+.++...
T Consensus 389 --~~~i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 389 --HREIEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred --hhhhhhcccccEEEEecceeeccCCeEEecc
Confidence 122222 123333345899888899876543
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-21 Score=214.97 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=185.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cc----------ccCceeeeeeeeEecccc-ccchhhhccc---cccccCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EG----------EAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVP 857 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~-~g----------e~gGITq~iga~~~~~e~-i~~r~~~v~~---~~~~~~~ 857 (1324)
+..+++|+||+|+||||+-+.|+...-. +. ...+-..-.-++++.++. .+.+..++.. .+.....
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 4456999999999999998887532100 00 000001111112222211 1111111111 1122235
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-----C--cHHHHHHHHHHHhcCC-cEEEEeecccccc-CcccC
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFIVALNKVDRLY-GWKTC 928 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----v--~~QT~E~l~ll~~~~v-P~IVaINKiDl~~-~w~~~ 928 (1324)
+++|+|+|||..|...+..|++++|+++|||++.-| + -.||++|..+++..++ .+||+|||||-+. +|+.
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~- 236 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN- 236 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch-
Confidence 699999999999999999999999999999999754 3 3599999999999885 7899999999653 4543
Q ss_pred CCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH-HHHHHHhH
Q 000735 929 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL-VQWTQKTM 1007 (1324)
Q Consensus 929 ~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L-~~l~~~~m 1007 (1324)
++|++....+...|...|+|.- ..+.++|+|+++|.++.+....+ .||....+
T Consensus 237 -----------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~f 290 (501)
T KOG0459|consen 237 -----------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIF 290 (501)
T ss_pred -----------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccchhhcccccCCcccCCcc
Confidence 3455556666777777777642 46789999999999999888633 34444433
Q ss_pred Hhhhh--------cccccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecce
Q 000735 1008 VEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079 (1324)
Q Consensus 1008 ~e~l~--------~~~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~ 1079 (1324)
++.++ .+.|++|+|.+-+ ...||++.|.|.+|.++.|+.+++.+...+ +.|.++
T Consensus 291 l~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~~----------------veV~~I 352 (501)
T KOG0459|consen 291 LEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKTN----------------VEVLGI 352 (501)
T ss_pred ceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCcc----------------eEEEEE
Confidence 33222 2457889988744 457899999999999999999998765421 233344
Q ss_pred eecc---cccccccceeeeccccccccCCCceEEeCCCc
Q 000735 1080 YLHH---KQIKAAQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1080 ~~~~---k~v~aa~gv~i~~~gL~~~~aG~~l~v~~~~~ 1115 (1324)
|... ..+-++-.++|.++|++.-.+-.+|+++.+..
T Consensus 353 ~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 353 YSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNN 391 (501)
T ss_pred ecccceeeeccCCcceEEEecccchhhccCceEEecCCC
Confidence 4333 33344557999999998765555688887664
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-21 Score=210.02 Aligned_cols=120 Identities=33% Similarity=0.435 Sum_probs=89.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc--cc--------------cccCceeeeeeeeEeccccccchhhhccccccccCCCEE
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNV--QE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v--~~--------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~ 860 (1324)
|+|+||+|||||||+++|+...- .. ...+|||.......+.+...... ...-....|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 99999999999999999985321 10 11233333333222222110000 0000134689
Q ss_pred EEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 861 IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998899999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=199.00 Aligned_cols=159 Identities=31% Similarity=0.385 Sum_probs=110.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeeeeeeeEeccccccchhhhccccccccCCCEEE
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~I 861 (1324)
|+|+||+++|||||+++|++.. +.. ....|+|.+...+.+.+... .-....|+|
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~~~~l 71 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEYLLNL 71 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcEEEEE
Confidence 9999999999999999998632 110 01123332222221111000 011235889
Q ss_pred EeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 862 IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
||||||..|..++.++++.+|++|||||++++...+++..|..+...++|+|||+||+|+.. ......
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-------~~~~~~----- 139 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS-------ADPERV----- 139 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc-------CCHHHH-----
Confidence 99999999999999999999999999999999999999988888778999999999999852 111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+. ...++. ...+|++||++|.||.+|+.+|...+
T Consensus 140 ----------~~~~~---~~~~~~------------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 ----------KQQIE---DVLGLD------------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ----------HHHHH---HHhCCC------------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 01111 111221 13589999999999999999997654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=213.53 Aligned_cols=129 Identities=27% Similarity=0.357 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEecccc-ccchhhhccc---cccccCCCEEEEeCC
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTP 865 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~e~-i~~r~~~v~~---~~~~~~~~I~IIDTP 865 (1324)
+|| |+|+||+|+|||||+++|++..-.....|.+.. ..+.+...+.. .+.|...+.. .+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 466 999999999999999999864322111111110 01112111111 1222322222 234566789999999
Q ss_pred CCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 866 GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
||.+|...+.++++.+|++|||||+..|+..+|..+|.++...++|+|||+||||+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999988889999999999999999999999999999988999999999999985
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=199.15 Aligned_cols=156 Identities=31% Similarity=0.368 Sum_probs=108.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Ccccccc--------------cCceeeeeeeeEeccccccchhhhcccccccc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 855 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~--t~v~~ge--------------~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~ 855 (1324)
+|+ |+|+||+++|||||+++|++ ..+.... ..|+|.+.....+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 465 99999999999999999986 2232211 1222222211111 223
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHH
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1324)
...++|||||||.+|..++..+++.+|++|||||+.++..+++..++..+...++|+|||+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34699999999999999999999999999999999999889998888888788999999999999852 11111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhH
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eL 995 (1324)
. +..+...+...+.... ...+++|++||++|.|+.++
T Consensus 137 ~---------------~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 137 V---------------VDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred H---------------HHHHHHHHHHhCCccc--------cCccCEEEeehhcccccccc
Confidence 1 1222223333322111 11368999999999998665
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=179.30 Aligned_cols=109 Identities=65% Similarity=1.020 Sum_probs=104.1
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeec
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~ 1096 (1324)
++|+|+|++..+|+|+|++++|++|+|+.||+|++|+++||++|+||+||+|+|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEeCCCccHHHHHHHHH
Q 000735 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEAM 1125 (1324)
Q Consensus 1097 ~gL~~~~aG~~l~v~~~~~~~~~~~~~~~ 1125 (1324)
+||+.+++|+.|+|+.++++++.+.++++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~~ 109 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEVM 109 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999988888776653
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=190.87 Aligned_cols=170 Identities=35% Similarity=0.448 Sum_probs=119.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc----------------CceeeeeeeeEeccccccchhhhccccccccCCCEE
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~----------------gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~ 860 (1324)
|+|+|++|+|||||+++|.+.....+.. +++|.+.....+ .+....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------EWPDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----------------eeCCEEEE
Confidence 8999999999999999998766543321 122222221111 12234699
Q ss_pred EEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 861 IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
|||||||.+|...+..++..+|++|+|||+.++...+..+++.++...++|++||+||+|+.. ...+
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~------- 132 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDL------- 132 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcH-------
Confidence 999999999999999999999999999999999999999999998888999999999999862 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
......+...+...++... +-........+++|++||++|.||.+|+.+|..+++
T Consensus 133 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 133 --------EEVLREIKELLGLIGFIST-KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --------HHHHHHHHHHHccccccch-hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1112223333333221100 000000123579999999999999999999987654
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-19 Score=195.58 Aligned_cols=180 Identities=23% Similarity=0.291 Sum_probs=110.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeee-eeEeccc-cccchhhhcccc---cc-----ccCCCEEEEeCCC
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-ATYFPAE-NIRERTRELKAN---AT-----LKVPGLLVIDTPG 866 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~ig-a~~~~~e-~i~~r~~~v~~~---~~-----~~~~~I~IIDTPG 866 (1324)
|+|+||+|||||||+++|+.........+. .+.+ +.+.... ....++..+... .. -....|+||||||
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~--~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGK--DGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCccccc--ccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 999999999999999999865433211000 0000 0111110 001111111110 00 1124589999999
Q ss_pred CcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
|.+|...+.+++..+|++|+|||+.++...++..+++.+...++|+|||+||+|++.. . ...+. .....
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~--~~l~~--------~~~~~ 149 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLIL-E--LKLPP--------NDAYF 149 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcc-c--ccCCH--------HHHHH
Confidence 9999999999999999999999999999999988888888788999999999998510 0 00000 01122
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChh
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~ 993 (1324)
.+...+..+...+...+++...++. +-...++..|++.|+++.
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 3333444444445555443221110 112358889999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=191.41 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=140.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC-Cc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-HE 868 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG-He 868 (1324)
..|+..|||+|.+|+|||||||+|++..+.. ..-..+|.+ +...+. .....+|.|||||| |.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~-------------~I~GI~---t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-------------RIRGIV---TTDNAQIIFVDTPGIHK 66 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh-------------heeEEE---EcCCceEEEEeCCCCCC
Confidence 4678899999999999999999999887652 111111221 111111 12235799999999 32
Q ss_pred c---h----hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 869 S---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 869 ~---F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
. + ......++..+|+++||||+++++.+.....+..|+..++|+|+++||||+... ..
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~~--------- 131 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------KT--------- 131 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------HH---------
Confidence 2 1 223345778899999999999999999999999999988999999999998731 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH----------------
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~---------------- 1005 (1324)
.+..+...+... ..+..+||+||++|.|++.|+..|..+++.
T Consensus 132 ---------~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~r 189 (298)
T COG1159 132 ---------VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPER 189 (298)
T ss_pred ---------HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHH
Confidence 011222222222 134589999999999999999999877642
Q ss_pred -----hHHhhhhc--cc--ccc-eeEEEEEEE-cCceeEEEEEEEeeeecCCCEEEEcccCCceeEEe
Q 000735 1006 -----TMVEKLTF--RN--ELQ-CTVLEVKVI-EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062 (1324)
Q Consensus 1006 -----~m~e~l~~--~~--~~~-~~VlEvk~i-~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~I 1062 (1324)
.+.+++.. .+ |.. .+.++-+.. +.....+.+.++ +=|.++.-++.|-+|..+..|
T Consensus 190 f~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~iK~I 255 (298)
T COG1159 190 FLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMIKKI 255 (298)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHHHHH
Confidence 12222211 11 211 222332333 344445555444 447888878888887654443
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=201.28 Aligned_cols=216 Identities=25% Similarity=0.276 Sum_probs=137.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~- 869 (1324)
.++..|+|+|++|+|||||+++|++..+.. ....+.|.+.....+. +....|+||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~----------------~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT----------------LKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE----------------eCCeEEEEEECCCcCCC
Confidence 456679999999999999999999876542 1222333322111111 2234699999999743
Q ss_pred hhhh-------hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhH
Q 000735 870 FTNL-------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 870 F~~~-------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~ 942 (1324)
|..+ ....+..||++|||||+..++...+..++..++..+.|+|||+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 3221 12347789999999999988887777777888888889999999999852 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH-----------------
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK----------------- 1005 (1324)
Q Consensus 943 ~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~----------------- 1005 (1324)
+..+...+... .....+|||||++|.||.+|+.+|..+++.
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 01111222211 123579999999999999999999887531
Q ss_pred ----hHHhhhh----cccccc-eeEEEEEEEcC-ceeEEEEEEEeeeecCCCEEEEcccCCceeEEeee
Q 000735 1006 ----TMVEKLT----FRNELQ-CTVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1064 (1324)
Q Consensus 1006 ----~m~e~l~----~~~~~~-~~VlEvk~i~G-~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ 1064 (1324)
.+.+++. ..-|.. .+.++.+.... ....|.+.|+ +=+.++.-+|+|.+|..+.+|..
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~~ 301 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIGA 301 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHHH
Confidence 2222221 112222 22333333322 2334666655 55888988999998877665553
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=197.77 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccc-ccchhhhccc---cccccCCCEEEEeCCCCcchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~-i~~r~~~v~~---~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
+|+|+||+|+|||||+++|++........+.+. .|.+...+.. .+.+...+.. ...|....|+|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999985432211111111 1222111111 1112222221 223455679999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.++++.+|++|+|||+..|...+|..+|.++...++|+|||+||+|+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=192.65 Aligned_cols=211 Identities=19% Similarity=0.266 Sum_probs=130.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F---- 870 (1324)
.|+|+|++|+|||||+++|++.++.. ...+++|++.-...+. .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 58999999999999999999877542 3334455442211111 11235899999996432
Q ss_pred ----hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 871 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
......++..+|++|||||++++...+ ...+..+...+.|+|+|+||+|+.. ... +.
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~----~~-------- 126 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDK----LL-------- 126 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHH----HH--------
Confidence 112345678899999999999876654 4456677778899999999999852 000 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH---------------------
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK--------------------- 1005 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~--------------------- 1005 (1324)
.....+... ....++||+||++|.||++|+.+|..+++.
T Consensus 127 -------~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 127 -------PLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred -------HHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 001111110 112379999999999999999999876532
Q ss_pred hHHhhhh--ccc--ccc-eeEEEEEEEcC-ceeEEEEEEEeeeecCCCEEEEcccCCceeEEee
Q 000735 1006 TMVEKLT--FRN--ELQ-CTVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1324)
Q Consensus 1006 ~m~e~l~--~~~--~~~-~~VlEvk~i~G-~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR 1063 (1324)
.+.+++. ... |.. .+.++.+.... ....|.+.|+ +=+.++.-+|+|.+|..+.+|.
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i~ 248 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAIG 248 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHHH
Confidence 1222221 111 222 22333343322 2334555554 4478888888998887655544
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=192.63 Aligned_cols=216 Identities=22% Similarity=0.316 Sum_probs=136.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
..|+..|+|+|++|+|||||+++|++..+.. .....+|.+.....+. .....++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 3578899999999999999999999876532 1112222211110000 1124699999999654
Q ss_pred h--------hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 870 F--------~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
. ......++..+|++|||||+++++......++.++...++|+|||+||+|++.. ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~--------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KE--------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HH---------
Confidence 3 223445678899999999999988877778888888778999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH----------------
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~---------------- 1005 (1324)
.+......+... ....++|++||++|.|+++|+.+|..+++.
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011111222211 124689999999999999999999876531
Q ss_pred -----hHHhh----hhcccccc-eeEEEEEEEcCcee-EEEEEEEeeeecCCCEEEEcccCCceeEEee
Q 000735 1006 -----TMVEK----LTFRNELQ-CTVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1324)
Q Consensus 1006 -----~m~e~----l~~~~~~~-~~VlEvk~i~G~Gt-vi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR 1063 (1324)
.+.+. +...-|.. ...++.+... |. .|.+.|+ +-+.++.-+|+|.+|..+.+|+
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~ 253 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIG 253 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHH
Confidence 11111 11112222 2223333333 33 2444444 4478888888898887665554
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=179.89 Aligned_cols=147 Identities=24% Similarity=0.310 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh--
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 873 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~-- 873 (1324)
.|+++|.+|+|||||+++|++.+...+.++|+|.+.....+.+.. ..+.||||||..++...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 599999999999999999999998889999999887665554332 34999999996555321
Q ss_pred ----hhhc--cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 874 ----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 874 ----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
...+ ...+|++|+|||+++ ..+....+.++...++|+|||+||||+.... +..+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 1222 357999999999987 3566677788888999999999999985210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
....+...| .+|+||+||++|.|+++|++.|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 011111111 2699999999999999998765
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=174.14 Aligned_cols=147 Identities=25% Similarity=0.309 Sum_probs=106.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh----
Q 000735 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 872 (1324)
Q Consensus 798 ~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~---- 872 (1324)
+|||++|+|||||+++|.+.+.. .....++|.......+. +....|.|||||||..|..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE----------------WGGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE----------------ECCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999976532 22334444433222222 1224599999999988654
Q ss_pred ----hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 873 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 873 ----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
.+...+..+|++|+|+|+.++....+..++.+++..++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~--------------- 122 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-------ED--------------- 122 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh-------HH---------------
Confidence 3445678899999999999988888888888888889999999999998621 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
....+...+ ..+++++||++|.||.+|+.+|+.+
T Consensus 123 ------~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 123 ------EAAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------HHHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 011121122 1268999999999999999998754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=174.34 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+++|++..+.......+...+....+.... ....|+||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 589999999999999999998766544333332222222111110 113488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHhc--CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
.+++.+|++|||+|++++...+... ++..++.. ++|+|||+||+|+.. . . .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~-~----~-------------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------S-V----T-------------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------h-H----H--------------
Confidence 9999999999999998865544443 33444433 699999999999741 0 0 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.... .+... ..++++++||++|.||.+++..|+..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999987654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=199.50 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=116.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
..+.|+|+|++++|||||+++|++... .....+|+|.+.....+.+. ...++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 446799999999999999999997653 23445666665443333222 2359999999975543
Q ss_pred h----------hh-hhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 872 N----------LR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 872 ~----------~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
. ++ .+++..||++|||||+.+|++.++...+.++...++|+|||+||+|++. ... .
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~------~~~---~---- 301 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK------DEK---T---- 301 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC------CHH---H----
Confidence 2 22 3467889999999999999999999999999889999999999999861 000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
+..+...+... +. +-..+++|+|||++|.||.+|+.+|..++.
T Consensus 302 -----------~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 302 -----------REEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111122111 00 013479999999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=172.02 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh--
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~-- 872 (1324)
|+|+|+|++|+|||||+++|.+..+.....++.|..+....+.+ ....|+||||||+.++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 67999999999999999999987664333333343332222211 224599999999853211
Q ss_pred -------hhhhccCcccceEEeeccccCCc---HHHHHHHHHHHhc--CCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 873 -------LRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 873 -------~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~ll~~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
........+|++|||+|+.+... ......+..+... ++|+|||+||+|+... ..+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~~------- 131 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------EDL------- 131 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hhH-------
Confidence 01111234689999999987432 2223445555554 7999999999998521 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.. ...+... ..+++++|||++|.||.+|+.+|+..
T Consensus 132 ------------~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 132 ------------SE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 00 1111111 23589999999999999999998754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=174.52 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.|+|||||+.+|.+..+.......++.++....+.+... ...++|||||||..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK--------------RVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHH
Confidence 45999999999999999999877654433333322222222222110 0248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----~~~------------------ 127 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR----EVL------------------ 127 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----ccC------------------
Confidence 9999999999999999885444443333 2222 3478999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+....... +...++++||++|.||.+++..|+..
T Consensus 128 -~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 -FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 01111111111 12478999999999999999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=197.48 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=116.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc---
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~--- 869 (1324)
.+.|+|+|++|+|||||+++|++.. +..+..+|+|.+.....+.+. ...|+||||||+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD----------------GQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC----------------CeeEEEEECCCCCCCcc
Confidence 4679999999999999999999765 344556677766544333322 24589999999643
Q ss_pred -------hhhhh-hhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 870 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 870 -------F~~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
|..++ .++++.||++|||||+..|+..|+...+.++...++|+|||+||+|+.. .....
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-------~~~~~------ 303 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKTME------ 303 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-------HHHHH------
Confidence 22222 3578889999999999999999999999999989999999999999852 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.+ ...+...|.. -..+|++++||++|.||.+|+..+..++.
T Consensus 304 -----~~---~~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 304 -----EF---KKELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred -----HH---HHHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 1111111111 13479999999999999999998876553
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=175.52 Aligned_cols=149 Identities=23% Similarity=0.351 Sum_probs=104.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc-
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v--~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe- 868 (1324)
.+.+.|+|||++|+|||||+++|++..+ ......|.|+++..+.. + ..+.||||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-----------------DGFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-----------------CcEEEEeCCCCcc
Confidence 4667899999999999999999998752 22334455555432221 1 248999999963
Q ss_pred ---------chhhhhhhcc---CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHH
Q 000735 869 ---------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 869 ---------~F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
.|..+...++ ..+|++|+|||+.+++..++..+++++...++|+|||+||+|+... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~--- 147 (179)
T TIGR03598 77 AKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SEL--- 147 (179)
T ss_pred ccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHH---
Confidence 3444433333 3578999999999999999999999998889999999999998621 111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChh
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~ 993 (1324)
...+..+...|...+ ..+++|+|||++|+||.
T Consensus 148 ------------~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 148 ------------NKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred ------------HHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence 112233333343322 23589999999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=171.54 Aligned_cols=154 Identities=23% Similarity=0.264 Sum_probs=108.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+++|++..+.....+.++..+....+.+.. ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998776555444444443333332221 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|++++...+....| ..+...++|+|||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986555444433 2233457999999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+... .++++++||++|.||.+++.+|+.
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN---------------GLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 01111122221 158999999999999999999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=169.62 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=107.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch--
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F-- 870 (1324)
++.|+|+|++|+|||||+++|.+..+. .+..+++|.......+.+ ....++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY----------------DGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE----------------CCeeEEEEECCCCccccc
Confidence 467999999999999999999876532 223334443332222221 2245899999997543
Q ss_pred --------hhh-hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 871 --------TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 871 --------~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
..+ ...++..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 111 2235678999999999999988888888888887889999999999986310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+..+...+... +. ....+++|++||++|.||.+++..+..+
T Consensus 132 ---------~~~~~~~~~~~~-~~---------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LP---------FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-cc---------cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111122111 10 0123689999999999999999888653
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=169.66 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|++++|||||+++|++..+.....+.+...+ ...+.+. .....++|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID--------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC--------------CEEEEEEEEECCCCcchhHHH
Confidence 4599999999999999999987655432222221111 1111111 011248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHH-HHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
..+++.+|++|||+|+++....+.... +..+ ...++|+|||+||+|+...+. ..
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK----VS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce----ec-----------------
Confidence 999999999999999987433222221 1112 224789999999999853210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......+... .++++++||++|.||.+++..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 25899999999999999999987654
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-18 Score=174.79 Aligned_cols=153 Identities=21% Similarity=0.305 Sum_probs=97.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc-cc-----ccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~-~g-----e~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
|+|||+.|+|||||+++|.+.... .+ ..+++...++. + .+....+.|||||||..|
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~----------------~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--I----------------EVGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--E----------------EECCEEEEEEECCCChhh
Confidence 899999999999999999753221 00 01111111111 1 122345999999999999
Q ss_pred hhhhhhccCcccceEEeeccccCCcH-HHHHHHHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHH
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~ 945 (1324)
..++...+..+|++|||||+.+.-.. .....+..+. ..++|+||++||+|+...+ ..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~------------ 125 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV------------ 125 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH------------
Confidence 99999999999999999999764211 1222222222 2579999999999985321 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 946 ~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
..+...+.... . . .....++++++||++|.||.+++.+|+
T Consensus 126 -------~~~~~~~~~~~-~-~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -------EEIKEVFQDKA-E-E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -------HHHHHHhcccc-c-c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 01111111100 0 0 001247999999999999999999885
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=170.21 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+++|++..+.....++++.++....+.+.... ..++||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT--------------VRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE--------------EEEEEEECCCcHHHHHHHH
Confidence 48999999999999999999988876666666666554444332110 2489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH-hc--CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~-~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..+|++|||+|+++.-+.+....| ..+. .. ++|+|||+||+|+... .....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 999999999999999876544444333 2222 23 4999999999998421 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+....... .++++++||.+|.||.+|+.+|...
T Consensus 126 -~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 -EEGEKKAKEL---------------NAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -HHHHHHHHHh---------------CCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 0111111111 2589999999999999999998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=169.27 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+++|++..+.....++++.++....+.+... .....++||||||+..|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS------------DEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC------------CCEEEEEEeeCCchHHHHHhHH
Confidence 5999999999999999999987665544444444332222211100 0112489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHH-HH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~l-l~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
..++.+|++|||+|+++.-..+....|.. +. ..++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 99999999999999987543344333322 22 247999999999998521 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+....... .++++++||++|.||.+|+.+|..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEAEALAKRL---------------QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 0111111111 148999999999999999998864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=170.44 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....|.|||||||..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 589999999999999999998876544433333222211111111 012478999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHH--HHHh------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~--ll~~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.+++.||++|+|+|+++....+....|. ++.. .++|+|||+||+|+... ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~-------------- 128 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVS-------------- 128 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccC--------------
Confidence 9999999999999998754333332221 1111 27899999999998620 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+...+... +.++++++||.+|.||.+++.+|+..+.
T Consensus 129 ----~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 129 ----TKKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ----HHHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01111122222 2368999999999999999999886553
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=173.11 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+.+.|+|+|++++|||||+++|.+..+.. ++..+|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 34669999999999999999998764321 122222111000 01123589999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcH-HHHHHHHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++..++..+|++|||+|+++.-.. .....+..+ ...++|+|||+||+|+.... .
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------S--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------C---------------
Confidence 999899999999999999875221 112222222 23578999999999985210 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+...+....++ ...+++|+|||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111112111111 1347999999999999999998875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=170.24 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.+.|+|+|+.|+|||||+++|....+..+...+++.++....+.+... ...+.|||||||..|..+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE--------------KIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHH
Confidence 356999999999999999999977665444344433332222222110 023789999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
+...+..+|++|+|+|+.++...+....| ..+...++|+|||+||+|+... ..+..
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~~-------------- 132 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVSQ-------------- 132 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCH--------------
Confidence 99999999999999999876444333332 3333457999999999998521 11100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+...+... ..++++++||++|.|+.+++..|...
T Consensus 133 ----~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 133 ----QRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----HHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 011111111 12589999999999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=167.06 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|.+|+|||||+++|.+..+.....+.+.... ...+.... ....+.||||||++.|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHHH
Confidence 589999999999999999998766543333222111 11111110 012378999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHH-HHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..+|++|+|+|+++....+.... +..+ ...++|+|||+||+|+... ...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~------------------ 124 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS------------------ 124 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec------------------
Confidence 99999999999999987433333222 1122 2347899999999998520 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+....... .++++++||++|.||.+|+.+|+..
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 -SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred -HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00111111111 2489999999999999999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=168.45 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+++|++..+.....+.++.+++...+.... ....|+||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN--------------KEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC--------------eEEEEEEEECCccHHHHHHHH
Confidence 599999999999999999998876655445554444333332221 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHHh--------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~--------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
..++.+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.... ..+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999875333333332 22211 458999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
........... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 1579999999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-17 Score=196.52 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=115.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC----
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH---- 867 (1324)
+.+.|+|+|++|+|||||+++|++..+ ......|+|.+.....+.+. ...+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~----------------~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG----------------GKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC----------------CEEEEEEECCCccccc
Confidence 457799999999999999999998764 23445666665433333222 234889999994
Q ss_pred ------cchhhhhh-hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 868 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 868 ------e~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
+.|..++. ..+..+|++|||||+++++..+....+.++...++|+|||+||+|+... .....+
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~~--- 343 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYYL--- 343 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHHH---
Confidence 44555543 4578899999999999999999999998888889999999999998621 100000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+...+... ..+++++|||++|.||.+|+..|..++.
T Consensus 344 -----------~~~i~~~l~~~--------------~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 344 -----------EREIDRELAQV--------------PWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -----------HHHHHHhcccC--------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01111111111 2368999999999999999999987653
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=175.01 Aligned_cols=160 Identities=19% Similarity=0.122 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++|||||+++|++..+.....+++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 589999999999999999998776554444443333222222210 0012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH-------hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~-------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.+++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ ..
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~---------------- 128 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AK---------------- 128 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----cc----------------
Confidence 999999999999999874333333222 1111 2468999999999985210 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
....+...+...+ .+++++|||++|.||.+++.+|+..+..
T Consensus 129 ---~~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 129 ---DGEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ---CHHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0111222222222 2579999999999999999999876543
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-17 Score=166.05 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||++++|||||+++|++..+.....+.++.++....+.+... ...|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK--------------RVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHHH
Confidence 5999999999999999999988776555555555444333332210 12488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..||++|||+|+.+....+....| ..+.. .++|+|||+||+|+...+. .+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~------------------- 124 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VS------------------- 124 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CC-------------------
Confidence 999999999999999885444443333 22222 4699999999999852110 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .++++++||.+|.||.+++.+|+..+
T Consensus 125 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 125 REEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25799999999999999999998654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=168.23 Aligned_cols=147 Identities=25% Similarity=0.310 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh-----
Q 000735 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL----- 873 (1324)
Q Consensus 799 IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~----- 873 (1324)
|+|++|+|||||+++|++..+..+..+|+|.+.....+.+. ...+.||||||+..|..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 68999999999999999876555666677766543333322 235899999999887653
Q ss_pred -hhhcc--CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 874 -RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 874 -r~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
+...+ ..+|++|||+|+.+. .+....+..+...++|+|||+||+|+... ..+..
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~--------------- 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIKI--------------- 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccchh---------------
Confidence 44444 489999999999873 33344555667789999999999998631 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.. ..+... + .++++++||.+|.||..|+.+|..+
T Consensus 122 ---~~-~~~~~~-~-------------~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 ---DL-DKLSEL-L-------------GVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---hH-HHHHHh-h-------------CCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 0 1489999999999999999988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=199.25 Aligned_cols=117 Identities=34% Similarity=0.499 Sum_probs=94.8
Q ss_pred cccCCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccccchhhhcccc
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~e~i~~r~~~v~~~ 851 (1324)
.+..+|| |||+.|+|||||||.|.|+..+-. +..++|||...++...
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~--------------- 67 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL--------------- 67 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc---------------
Confidence 3456787 999999999999999999865421 1122333333332221
Q ss_pred ccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 852 ~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
....+.|+|||+|||.+|+..++..++.||+++++||+..|+.+||...|+++-..+...|+||||||++
T Consensus 68 -~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 68 -LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred -ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 1234569999999999999999999999999999999999999999999999999999999999999975
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-17 Score=175.12 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++|||||+.+|....+......+++.++....+.+.+. ...|.||||||++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 4899999999999999999988776555555544433322322210 12489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHH-HHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++.-..+....|. .+. ..++|+|||+||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 9999999999999999865544444332 232 2468999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
......+... + ..+.++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000111111 0 125799999999999999999987654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-17 Score=172.50 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
+..|+|||+.|+|||||+++|.+..+... .+.++..+....+.+. ......|.||||||++.|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 35699999999999999999987655422 2211111111111110 011235899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHH-----HHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-----~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.||++|||||+++.-...... ++......++|+|||+||+|+...+ .
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~---------------- 126 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------S---------------- 126 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------C----------------
Confidence 999999999999999998742222111 1122233579999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+...+....+. ....+++++|||++|.||.+|+.+|+..+.
T Consensus 127 ---~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 127 ---VSEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---HHHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 01111111101110 012367999999999999999999987653
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=172.15 Aligned_cols=162 Identities=16% Similarity=0.084 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.+.|+|+|+.|+|||||+.+|.+..+.....+.+...+.. .+.++ .....+.|||||||..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~--------------~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVID--------------EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEEC--------------CEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876643322222111110 00011 01124889999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHH-HHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.+|++|||+|+++.........| ..+ ...++|+|||+||+|+...+.. ..
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i----~~--------------- 130 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQV----ST--------------- 130 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc----CH---------------
Confidence 99999999999999999875432223222 222 2237899999999998532100 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~ 1008 (1324)
.........+ .+++++|||++|.||.++|.+|+..+...+.
T Consensus 131 ----~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 131 ----GEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ----HHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0011111111 1589999999999999999999877655433
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=166.70 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++|+|||||+++|.+..+.....++++ +.....+... .....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--------------~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEID--------------GEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEEC--------------CEEEEEEEEECCCcccchHHHH
Confidence 489999999999999999998766543333222 1111111100 0112488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..+|++|||+|+++.-.......| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999874332222222 111 22368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .+++++|||++|.||.+|+.+|+..+
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 125 -TEEGKELARQW---------------GCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred -HHHHHHHHHHc---------------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00011111111 15899999999999999999998654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=169.09 Aligned_cols=157 Identities=21% Similarity=0.159 Sum_probs=106.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|++++|||||+++|++..+.......++.++....+..... ...++||||||+..|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987765544333333333232222210 1248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.+.+..+|++|||+|+++....+.+..| ..++. .++|+|||+||+|+... +..+
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~------------------ 128 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVS------------------ 128 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 9999999999999999874443333332 22322 46899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...+... .++++++||++|.||.+++.+|+..+
T Consensus 129 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 129 -YEEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111112111 24789999999999999998887654
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=168.08 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..|+|||||+++|.+..+......+++.++....+.+... ...+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHHH
Confidence 5999999999999999999987766544444443332222221110 12488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|+++.-....+. ++..+.. .++|+|||+||+|+... ....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~------------------- 126 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK----RVVD------------------- 126 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc----cCCC-------------------
Confidence 9999999999999998743222222 2222222 46899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .++++++||++|.||.+++..|+..+
T Consensus 127 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 127 YSEAQEFADEL---------------GIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHc---------------CCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987654
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=176.06 Aligned_cols=201 Identities=18% Similarity=0.195 Sum_probs=117.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+.+|+...+.. ..+ .++..++... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999877643 222 2222221110 1113489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHH-HHHHH---hcCCcEEEEeeccccccCcccCCCch-HHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAP-IVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~-~~~~L~~q~~~v~~ef~~ 950 (1324)
.+++.+|++|||+|+++......+.. |..+. ..++|+|||+||+|+...|....... ....+.... .. ..
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~---~r--~v 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPED---QR--QV 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccc---cc--cC
Confidence 99999999999999988443333322 22222 24589999999999975332110000 000000000 00 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhcccccceeE
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1021 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~V 1021 (1324)
..........+.+- ...+|++-.....++|++|||++|.||.+||..|+..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~~-~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRINK-YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhCc-cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 01111111122110 01122222222347899999999999999999998877665555433333334443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=167.18 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=98.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+.+|.+...... .++..+|.....+. +....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 11122221111000 11234899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHH-HHHHHHH-H-----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQT-IESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT-~E~l~ll-~-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
++..+|++|||||+++...... ...+..+ . ..++|+|||+||+|+... ...
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~~---------------- 122 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LTA---------------- 122 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CCH----------------
Confidence 9999999999999988643221 2222222 1 247999999999998521 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
..+...+ ++. .+ ....+++++|||++|.||.+++.+|.
T Consensus 123 ---~~~~~~l---~~~--~~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 123 ---VKITQLL---GLE--NI-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ---HHHHHHh---CCc--cc-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 0111111 110 00 01235799999999999999999885
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=168.84 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=105.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|.+++|||||+++|.+..+.....++++.+.....+.+.. ....|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG--------------KKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4699999999999999999998876654444433322221121111 01248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|++++...+.+..| ..+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK----RVVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 9999999999999999875443333222 2222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......+..+ .+++++|||++|.||.++|..|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111111111 25899999999999999999987644
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=167.88 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+++|.+..+.....+.+..++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999998766543333332222222121111 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHH-HH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|+++....+.+..|. .+ ...++|+|||+||+|+... ..+ .
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------~~~-----------------~ 126 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ------RDV-----------------T 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCc-----------------C
Confidence 9999999999999998854434333332 22 2246899999999998521 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...+... .+++++|||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 YEEAKQFADEN---------------GLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 01111111111 2589999999999999999888754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=168.16 Aligned_cols=151 Identities=26% Similarity=0.263 Sum_probs=98.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+++|+...+.. ..+++...+ ..+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~----------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVT----------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEE----------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 8999999999999999997655432 112111111 1111 11235899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHH-HHHHHH-HHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~-ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..||++|||||+++....+ +...|. ++.. .++|+|||+||+|+...+ ..
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~~------------------ 118 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------SE------------------ 118 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------CH------------------
Confidence 999999999999998742221 223333 2222 378999999999985321 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+...+ ++.. + ....+++++|||++|.||.+|+.+|++
T Consensus 119 -~~i~~~~---~~~~---~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 -AEISEKL---GLSE---L----KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -HHHHHHh---Cccc---c----CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 1111111 1110 0 012358999999999999999999863
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=189.98 Aligned_cols=152 Identities=24% Similarity=0.352 Sum_probs=119.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh--
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~-- 871 (1324)
|+|+|+|.+|+|||||+|+|+++... ....+|+|.+.-.... .|....|++|||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~----------------~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA----------------EWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcccee----------------EEcCceEEEEECCCCCcCCch
Confidence 88999999999999999999988754 3456677766432222 2444569999999976432
Q ss_pred ---h----hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 872 ---N----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 872 ---~----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
. ....++..+|++|||||+..|++++..+...+|+..+.|+|+|+||+|-..
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--------------------- 126 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--------------------- 126 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch---------------------
Confidence 2 234577889999999999999999999999999988899999999999641
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.......|..+|+ -.++||||.+|.||.+|++.|+.+++
T Consensus 127 -------~e~~~~efyslG~--------------g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 -------AEELAYEFYSLGF--------------GEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -------hhhhHHHHHhcCC--------------CCceEeehhhccCHHHHHHHHHhhcC
Confidence 1123344555554 37899999999999999999998875
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-17 Score=167.90 Aligned_cols=153 Identities=22% Similarity=0.257 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccC-CCEEEEeCCCCcc-----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES----- 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~-~~I~IIDTPGHe~----- 869 (1324)
.|+|||++|||||||+++|.+.....+...+.|.......+.+ .. ..|+||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~----------------~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV----------------DDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc----------------CCCCeEEEEecCcccCccccc
Confidence 3899999999999999999876543333333333221111111 11 2699999999742
Q ss_pred --hhhhhhhccCcccceEEeeccccC-CcHHHHHHH-HHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 870 --FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l-~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
+.....+.+..||++|||+|+.++ -..+....| ..+.. .++|+|||+||+|+... ..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~------ 133 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EELF------ 133 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhhH------
Confidence 222333455679999999999886 333333332 33332 36899999999998521 1110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+.... ..++++++||++|.||.+|+.+|..+
T Consensus 134 -------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 134 -------------ELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -------------HHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 0011111110 13579999999999999999998754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=173.00 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=105.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC-----
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH----- 867 (1324)
+.+.|+|+|++|+|||||+++|++..+..+..+|+|.++.... ...++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--------------------~~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--------------------WGDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--------------------ecceEEEeCCccccccc
Confidence 4577999999999999999999987766555556655432111 114899999995
Q ss_pred ------cchhhhhh----hccCcccceEEeeccccC-----------CcHHHHHHHHHHHhcCCcEEEEeeccccccCcc
Q 000735 868 ------ESFTNLRS----RGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1324)
Q Consensus 868 ------e~F~~~r~----rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~ 926 (1324)
+.|..++. +++..++++|+|+|++.. ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 33444332 245568899999998642 2345667777777789999999999998521
Q ss_pred cCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 927 ~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
. .. .+..+.. ..++.. .|. .+ ..++|+|||++| ||.+|+.+|...+.
T Consensus 146 -----~-~~---------------~~~~~~~---~~~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 146 -----R-DE---------------VLDEIAE---RLGLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred -----H-HH---------------HHHHHHH---HhcCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 0 00 0111111 122210 010 01 247999999999 99999999987553
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=166.28 Aligned_cols=155 Identities=19% Similarity=0.120 Sum_probs=100.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
+.|+|||.+|+|||||+++|....+.....+.+...+ ...+.... ....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 4599999999999999999997665433222221111 01111110 01247899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHH-HHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
..+++.+|++|||+|+++......... +..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 999999999999999987432222222 22222 236899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.... ..+.. .++ +++++|||++|.||.+|+.+|+..
T Consensus 126 --~~~~-~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 --REEG-QALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred --HHHH-HHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 0000 11111 111 689999999999999999998753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=166.83 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+.+|++..+.......++.+.....+.+.. ....|.|||||||..|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhH
Confidence 3599999999999999999998766543333332222111111111 01248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHHH-----HHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-----LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-----ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
..+++.+|++|||+|+++....+....|. ++. ..++|+|||+||+|+.. +...
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~-------------- 132 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-----RQVS-------------- 132 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-----cccC--------------
Confidence 99999999999999998754433333221 111 23589999999999841 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+..++ .++++++||++|.||.+++..|+.
T Consensus 133 -----~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 -----TEEAQAWCRENG--------------DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -----HHHHHHHHHHCC--------------CCeEEEEECCCCCCHHHHHHHHHh
Confidence 011111222221 247999999999999999998875
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=168.40 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=107.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|..++|||||+++|.+..+.....++++.++....+.+..-... .....-....|.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPG----GTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcccc----ccccCCCEEEEEEEeCCChHHHHHHH
Confidence 46999999999999999999987765544444444433322222110000 00000011348899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
...++.+|++|||+|+++.-..+....| ..+.. .++|+|||+||+|+.... ...
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~v~----------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR----QVS----------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----ccC-----------------
Confidence 9999999999999999874333333222 22222 368999999999985210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .++++++||++|.||.+|+.+|+..+
T Consensus 140 --~~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 --EEQAKALADKY---------------GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred --HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 15899999999999999999997644
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=163.87 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 3599999999999999999998876542222222222222222211 11248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcH-HHHHHHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|+++.-.. +...++..+.. .++|+||++||+|+... +..+
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------ 125 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK----RQVS------------------ 125 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----CcCC------------------
Confidence 8889999999999999864221 12222333333 35899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...+... .++++++||++|.|+.+++.+|+..+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 126 -TEEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 01111112111 15799999999999999999998654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=168.26 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=105.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|+|..++|||||+.+|....+.....+.+...+. ..+.+.. ....++||||||+..|..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDN--------------EPALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 356999999999999999999987665332222211111 1111110 0124899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHH-HHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.+|++|||+|+++....++...| ..+. ..++|+|||+||+|+...+ ..+
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~---------------- 126 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVT---------------- 126 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccC----------------
Confidence 99999999999999999987666655433 2222 2469999999999985210 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
........... .+++++|||++|.||.++|.+|+..+
T Consensus 127 ---~~~~~~~a~~~---------------~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 127 ---TEEGRNLAREF---------------NCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHHHHHHHHh---------------CCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=167.56 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+++|+...+.....+.+..++....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR--------------GKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCChhhccccH
Confidence 589999999999999999987665443333333333222222110 112489999999999999988
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
..+..+|++|||+|++++...+.+..| ..+.. .++|+|||+||+|+... ...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-----~~~-------------------- 122 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-----KVK-------------------- 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-----cCC--------------------
Confidence 899999999999999886544444333 22322 26999999999998510 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.... .+... ..+++++|||++|.||.+++.+|+..+
T Consensus 123 ~~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 123 AKQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 0000 11111 236899999999999999999997544
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=164.83 Aligned_cols=154 Identities=21% Similarity=0.208 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 589999999999999999998765443333332222211111110 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..++.+|++|||+|+++....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 899999999999999875443333332 222 2357899999999998621 1000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+....... .++++++||++|.||.+++..|+..
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 126 --EEGLKFARKH---------------NMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred --HHHHHHHHHc---------------CCEEEEEecCCCCCHHHHHHHHHHh
Confidence 0111111111 2589999999999999999988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-17 Score=195.79 Aligned_cols=152 Identities=25% Similarity=0.333 Sum_probs=112.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc---
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~--- 869 (1324)
.|+|+|||++|+|||||+++|++..+. .....|+|.+.....+.+ ....|+||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----------------NGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----------------CCcEEEEEeCCCcCCcch
Confidence 377999999999999999999986542 345667776654333322 223589999999763
Q ss_pred -----hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
|...+..++..||++|||||+.++++.....++.+++..++|+|+|+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-------~~----------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-------EA----------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-------ch-----------
Confidence 4445566788999999999999998888888888888889999999999998521 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
. ...+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~-----------~---~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGL-----------G---EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCC-----------C---CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 011112232 1 246999999999999999998655
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=165.22 Aligned_cols=156 Identities=19% Similarity=0.106 Sum_probs=101.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|.+|+|||||+.+|+...+.....+++...+. ..+.... ....+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECC--------------EEEEEEEEECCCcccchhHH
Confidence 35999999999999999999876554332232221111 1111110 11247899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHH-HHHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
..+++.+|++|||+|.++....+... ++..+ ...++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc---------------
Confidence 99999999999999987643332222 22222 2246899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+ ..+... + .++++++||++|.||.+++.+|+..+
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 126 --KEQG-QNLARQ------------W--GCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --HHHH-HHHHHH------------h--CCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0000 111110 0 15899999999999999999987644
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=165.77 Aligned_cols=156 Identities=18% Similarity=0.114 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+++|.+..+.....+.++.++....+... .....|.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN--------------DKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCChHHHHHHHH
Confidence 59999999999999999999877654333333222211111110 0012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... +...
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~----~~~~------------------- 125 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE----RVVS------------------- 125 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc----cccC-------------------
Confidence 9999999999999997643322222 2233332 35899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
........... .+++++|||++|.||.+|+.+|+..+
T Consensus 126 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 126 SERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00111111111 14799999999999999999987643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=193.03 Aligned_cols=151 Identities=25% Similarity=0.326 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc------
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe------ 868 (1324)
+|+|||++|+|||||+++|++.... ....+|+|.+.....+.+. ...|+||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 3899999999999999999986542 2345667765544433332 2359999999973
Q ss_pred --chhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 869 --SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 869 --~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
.|..++..++..+|++|||||+..|+.+.....+.+|+..++|+|+|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~-----~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED-----A--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc-----c---------------
Confidence 345556678889999999999999999999999999999999999999999985210 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
....+...|+ .+++++||.+|.||.+|++.+...++
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 0011222232 36899999999999999999876653
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=169.19 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=102.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|..++|||||+.+|+...+.....+.++..+.. .+.+.. ....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDG--------------QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECC--------------EEEEEEEEECCCchhhHHHHHH
Confidence 8999999999999999999776644332222111100 000000 0123889999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHHHHH-HHHHh------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
+++.+|++|||+|+++......+..| ..+.. .++|+|||+||+|+.... .+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~--------------- 125 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVS--------------- 125 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccC---------------
Confidence 99999999999999875433333322 22221 468999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
........... .+++|++||++|.||.+++.+|+..+..
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 126 --TEEGAALARRL---------------GCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred --HHHHHHHHHHh---------------CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 00011111111 1479999999999999999999875543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=166.74 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+++|.+..+.....+.+..++... +.... -....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 599999999999999999998776544434333332211 11100 0012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH--HHHHHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++..+|++|||+|+++....+... ++..+. ..++|+|||+||+|+...-. .... + .
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~---v-------------~ 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN---LDRK---V-------------T 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc---ccCC---c-------------C
Confidence 9999999999999998754444332 222222 24689999999999852100 0000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
...........+ ..++|++||++|.||.+++..|+..+...
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 011111111222 23789999999999999999998766443
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=165.70 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=99.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|.+|+|||||+++|.+..+... .+++...+. .+... ....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~---------------~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE---------------KHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC---------------CceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765421 111111111 11000 1135999999999999999998
Q ss_pred ccCcccceEEeeccccCCcHH-HHHHHHH-HH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNL-LK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~l-l~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..+|++|||+|+.+..... ....+.. +. ..++|+|||+||+|+...+ .
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 999999999999998753211 1112222 22 2579999999999985211 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+....+. ....+++++|||++|.||.+++.+|..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 01111111111110 012468999999999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=173.12 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.....|+|||+.|+|||||+.+++...+.....+++...+....+.... ....|.||||||+..|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 5566799999999999999999987766544333332222222221110 01248999999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHH-HHHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
.++..+++.+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+.. ....
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-------~~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-------ccCC--------------
Confidence 9999999999999999999986554444433 2222 24689999999999841 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ---~~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 ---AKQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ---HHHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0001 11111 125899999999999999999987644
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=160.01 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=99.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
+.|+|+|++|+|||||+++|....+......+++.++....+.+... ...+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK--------------TYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE--------------EEEEEEEECCCcccchHHH
Confidence 46999999999999999999988766566667776665543433220 0248899999999997665
Q ss_pred hhccCcccceEEe-------eccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 875 SRGSGLCDIAILV-------VDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 875 ~rg~~~aDiaILV-------VDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
...+..++.+|++ +++.++...+....+.++.. ++|+|||+||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 5555544444444 44444443444444444433 8999999999998621 010
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 0111112111 12479999999999999998876
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=165.03 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.|+|||||+++|++..+.....+.+.... ...+.. ......|.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~--------------~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC--------------SKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE--------------CCEEEEEEEEECCCCCcchHHHH
Confidence 489999999999999999998776543322221111 000000 01123489999999999999998
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
.+++.+|++|||+|+++........ ++..++. .++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------- 128 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------- 128 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH-------------
Confidence 8999999999999998854433322 2233332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
......... ..+++++|||++|.||.+++.+|+.+
T Consensus 129 ----~~~~~~~~~---------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 ----NEGAACATE---------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ----HHHHHHHHH---------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 000000111 12578999999999999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=166.28 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++|||||+.+|.+..+.....+++...+.. .+.... ....|+||||||++.|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 59999999999999999999877754444444322211 111110 012488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH--HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++....+... ++..+.. .++|+|||+||+|+.. ...+...+...... . ..
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~---~--v~ 136 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQK---P--IT 136 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCC---C--cC
Confidence 8999999999999998854444432 2223322 3689999999999852 11111111100000 0 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.... ..+... .+.+++++|||++|.||.++|..++.
T Consensus 137 ~~~~-~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 137 PETG-EKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHH-HHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 0001 111110 12368999999999999999988875
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=165.31 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh-
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~- 871 (1324)
|...|+|+|+.|+|||||+++|+...+......+++.++....+.+.. ....|.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 345699999999999999999987766544333333222222221111 11348999999999997
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHH-HHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
.++..+++.+|++|||+|+++....+....|. .+.. .++|+|||+||+|+.... . +
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~--~------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI----Q--V------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc----C--C-------------
Confidence 57788889999999999999876666655543 3332 358999999999985210 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcc---CCChhhHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~t---GeGI~eLl~~L~~l~ 1003 (1324)
.......+... ..++++++||++ +.||.++|..|+..+
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 00111122211 126899999999 888888888776543
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=160.52 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=101.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.|+|||||+++|.+..+.....+++...+.. +. +....+.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~----------------~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VT----------------KGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EE----------------ECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999999999999999876654333322222111 11 11124899999999999999999
Q ss_pred ccCcccceEEeeccccCCc-HHHHHHHHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..+|++|||+|+.+... .+....+..+. ..++|++||+||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999986322 22233333332 247899999999998521 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+ +...++.. .....++++++||++|.||.+++.+|..
T Consensus 120 -~~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DEL---IEQMNLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHH---HHHhCccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 011 11111110 0123478999999999999999999864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=159.05 Aligned_cols=157 Identities=27% Similarity=0.372 Sum_probs=105.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
+..+|+|+|++|+|||||+++|++..+.... ....+.......+ ......+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY----------------TDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE----------------EcCCeEEEEEECCCCCcch
Confidence 4567999999999999999999976543211 1111111110000 0112358999999976543
Q ss_pred h--------hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 872 N--------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 872 ~--------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
. .....+..+|++++|+|+.+.........+..+...+.|+||++||+|+... ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~----------- 128 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KE----------- 128 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HH-----------
Confidence 2 3345678899999999999986666666777777778999999999998521 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 944 v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+..+...+... ...++++++|++++.|+.+|+.+|.++
T Consensus 129 -------~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 129 -------DLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred -------HHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 011112222221 123689999999999999999998653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=168.89 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
.|+|||..++|||||+.+|....+..+ ...+++.++....+.+... ...|+||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 489999999999999999998776533 2223322222111211110 1248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHH-HHHHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|+++....+... ++..+. ..++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~------~~~~---------------- 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE------RVVK---------------- 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc------cccC----------------
Confidence 88999999999999998743332222 222332 236899999999998520 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
...+......+ .++++++||++|.||.+|+.+|+..+..
T Consensus 126 -~~~~~~l~~~~---------------~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -REDGERLAKEY---------------GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00011111111 1589999999999999999999876643
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=169.02 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.+.+.|+|+|+.|+|||||+++|.+..+.. ..+.+....+ .+. +....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~--~i~----------------~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE--ELT----------------IGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceE--EEE----------------ECCEEEEEEECCCCHHHH
Confidence 456789999999999999999998765431 1111111111 111 112348899999999999
Q ss_pred hhhhhccCcccceEEeeccccCCc-HHHHHHHHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
.++..++..+|++|||+|+.+.-. ......+..+. ..++|+||++||+|+.. ....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCH------------
Confidence 888888999999999999986421 11222332222 35699999999999852 1000
Q ss_pred HHHHHHHHHHHHHHHcCCch-hhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNT-ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~-e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+...+....+.. ............+++++|||++|.||.+++.+|.++
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11111221111000 000000011234689999999999999999999765
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=163.72 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=99.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+++|++..+.. ....+ .+....+. +....+.|||||||..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~-~~~t~--~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVT-TIPTI--GFNVETVE----------------YKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-CCCCc--CcceEEEE----------------ECCEEEEEEECCCChhhHHHHHH
Confidence 8999999999999999999776321 11111 11111111 11235999999999999999998
Q ss_pred ccCcccceEEeeccccCC-cHHHHHHHHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv-~~QT~E~l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+..+|++|+|+|+..+- .......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 999999999999998752 11222333222 2357899999999998621 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111111100 123579999999999999999988863
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=163.52 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|.+++|||||+++|.+..+.....++++.++....+.... ....+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG--------------KTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHHHH
Confidence 3599999999999999999998776544444444333222222211 01248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...+..|+++|||+|+++....+.+..| ..+.. .++|+|||+||+|+... ..+
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------~~~----------------- 126 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL------RAV----------------- 126 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------ccC-----------------
Confidence 9999999999999999864333332222 22222 35899999999998521 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
....+...+... .++++++||++|.||..|+..|+..
T Consensus 127 ~~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 127 PTEEAKAFAEKN---------------GLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CHHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 000111111111 2589999999999999999998754
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=170.28 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
+.|+|||+.|+|||||+.+|.+..+......+++.++....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4699999999999999999998766543333333232222221111 01248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHH-HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+++.+|++|||+|+++.-..+... ++..+.. ..+|+|||+||+|+... ..+.
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~------~~~~----------------- 129 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER------KVVE----------------- 129 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cccC-----------------
Confidence 99999999999999998753333222 2233322 35899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...+... .+++++|||++|.||.+||.+|+..+
T Consensus 130 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 130 TEDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00111111111 15899999999999999999998755
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=163.90 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||++++|||||+.+|++..+.....+.+...+ ...+.... ....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 489999999999999999998776544433332211 11121111 012478999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH--HHHHHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|+.+.-..+... ++..+. ..++|+|||+||+|+... ......+..... ....
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~-----~~v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKE-----KPVT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccC-----CCCC
Confidence 9999999999999998754333332 223333 357999999999998521 111111100000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.......+... +..++++|||++|.||.++|..|+.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 11111122222 2247999999999999999998865
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=166.28 Aligned_cols=153 Identities=25% Similarity=0.257 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+.+|....+.. . ...++..+..+ .+....+.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-T----SPTIGSNVEEI--------------VYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEE--------------EECCeEEEEEECCCCHHHHHHH
Confidence 459999999999999999998765432 1 11222211111 0112359999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHH-HHHHHH-HHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~-ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
..++..||++|||+|+++..... ....|. ++.. .++|+||++||+|+...+ +.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~---------------- 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TP---------------- 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CH----------------
Confidence 99999999999999998753211 122222 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+...+....+. ...+++++|||++|.||.+++.+|..
T Consensus 135 ---~~i~~~l~~~~~~----------~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 ---AEISESLGLTSIR----------DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ---HHHHHHhCccccc----------CCceEEEecccCCCCCHHHHHHHHhc
Confidence 1111112111000 12368999999999999999999853
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=170.21 Aligned_cols=150 Identities=23% Similarity=0.278 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~---- 869 (1324)
.++|+|||++|||||||+++|.+..+......+.|.......+.+. ....++||||||+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCH
Confidence 3579999999999999999999876433222222222211111111 112599999999843
Q ss_pred -----hhhhhhhccCcccceEEeeccccCCcHHHHH-HHHHH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
|...+ ..+..+|++|+|+|++++....... +..++ ...++|+|||+||+|++..+ .
T Consensus 106 ~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~------- 170 (204)
T cd01878 106 QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------E------- 170 (204)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------H-------
Confidence 22221 2356799999999999876544332 22333 33468999999999986310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
+...+. ...++++++||++|.||.+++.+|...
T Consensus 171 --------------~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 --------------LEERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred --------------HHHHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 000010 124689999999999999999988754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=165.66 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=99.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.+.|+|+|+.++|||||+.+|....+.. ..++++.++. .+. +....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~----------------~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT----------------YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE----------------ECCEEEEEEECCCCHHHHHH
Confidence 3569999999999999999998654432 1122211111 110 11234999999999999999
Q ss_pred hhhccCcccceEEeeccccCCcH-HHHHHHH-HHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEP-QTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~-ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.||++|||||+++.... .....|. ++. ..++|+|||+||+|+...+ .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 98899999999999999874221 2223332 222 2358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+...+....+ ....+++++|||++|.||.++|.+|.
T Consensus 128 ---~~~i~~~~~~~~~----------~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKLGLTRI----------RDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHcCCCcc----------CCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 0111111110000 11335899999999999999999885
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=162.49 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+.++.+..+.....+.+. ......+.... ....+.||||||++.|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 599999999999999999997765433222211 11111111110 012378999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHH-HHHHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~------~~~~---------------- 125 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE------REVS---------------- 125 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------CccC----------------
Confidence 999999999999999874322222 22222222 47999999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.... ..+.. .+ .+++|+|||++|.||.+++.+|+..
T Consensus 126 -~~~~-~~~~~------------~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 -SAEG-RALAE------------EW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred -HHHH-HHHHH------------Hh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 0000 11111 01 1589999999999999999988753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=167.66 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..|+|||||+.+|++..+.....+.+...... .+..+ .....|+||||||++.|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~--------------~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVD--------------GLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEEC--------------CEEEEEEEEECCCChhcccccc
Confidence 48999999999999999999877654333333222110 00000 0113489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH--HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... ......+.. .... ...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~~----~~~~-~v~ 135 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQR----YGKH-TIS 135 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHhh----ccCC-CCC
Confidence 8999999999999998854444443 3334433 37899999999998521 000000000 0000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
........... +.+++++|||++|.||.++|.+|+..+
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 136 YEEGLAVAKRI--------------NALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHHHHc--------------CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00111111111 236899999999999999999987654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=162.50 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=102.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+++|.+..+.....+.+...... .+.+.. ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA-DVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE-EEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 6899999999999999999877654333333222111 111110 1124899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHH--HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~--E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
.+..+|++|||+|+++.-..+.. .++..+.. .++|+|||+||+|+... ......+...... ....
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~~ 134 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQE-----PVTY 134 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCC-----CccH
Confidence 99999999999999874222222 12233332 37999999999998521 0000000000000 0000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.......... +.+++++|||++|.||.+|+..|+..
T Consensus 135 ~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 135 EQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111111111 22479999999999999999998754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=158.40 Aligned_cols=153 Identities=25% Similarity=0.234 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++++|||||+++|.+..+.......++.++....+.... ....++||||||+..|..++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 599999999999999999998776654333333333333322211 113489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..+|++|+|+|+.+.-...... ++..+.. .++|+||++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 9999999999999998743333322 2333333 35899999999998511 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+...+... .++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKEN---------------GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHHc---------------CCeEEEEecCCCCCHHHHHHHHh
Confidence 01111111111 25899999999999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=160.04 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++|||||+++|.+..+.....+.++..+....+.+.. ....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 489999999999999999998776543333332222211111110 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++..+|++|+|+|++++-..+....| ..+ ...++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~----------------- 124 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVS----------------- 124 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCC-----------------
Confidence 889999999999999876443333322 222 2236899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 125 KSEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00111111111 2578999999999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-16 Score=164.30 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=104.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc--
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 868 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe-- 868 (1324)
+.|.|+|||++|+|||||+++|++..+. .....|.|+.+..+.+ ...|.||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 3456999999999999999999976421 1223344444332211 1359999999963
Q ss_pred --------chhhhhhhccC---cccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHH
Q 000735 869 --------SFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 869 --------~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
.|..+...++. .++++++|+|+..+........+.++...++|+++++||+|++.++ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~~---- 153 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------ER---- 153 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------HH----
Confidence 34444443333 4578889999988887777777777888899999999999986321 00
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
......+...+... .++++|+||++|.|+.+++..|..++
T Consensus 154 -----------~~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 154 -----------KKQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -----------HHHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 00011111122111 25889999999999999999987654
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=160.49 Aligned_cols=157 Identities=16% Similarity=0.179 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+++|.+..+... .+.++... ..... .......++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~~~~------------~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TIPAD------------VTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Eeeee------------ecCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998766432 11111110 00000 001113589999999998888877
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..+|++|||+|+++....+... .| ..++. .++|+|||+||+|+...+. . ..+.. .
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~------~-~~~~~-----------~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS------Q-AGLEE-----------E 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc------h-hHHHH-----------H
Confidence 7889999999999998865544432 22 33332 3699999999999963210 0 00000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
+..+...+ ....++++|||++|.|+.+|+..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 01111111 112379999999999999999988654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=162.47 Aligned_cols=151 Identities=22% Similarity=0.220 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....|.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE----------------ECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997555432 2221111110 011 1123489999999999999999
Q ss_pred hccCcccceEEeeccccCCc-HHHHHHHHHH-Hh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.+++.||++|||+|+++... .+..+.|..+ .. .++|+||++||+|+...+ ..
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~----------------- 119 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------SA----------------- 119 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------CH-----------------
Confidence 99999999999999976321 1222223222 22 358999999999985210 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
..+...+ +++. -....+.++++||++|.||.+++++|.
T Consensus 120 --~~i~~~~---~~~~-------~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 120 --AEVTDKL---GLHS-------LRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred --HHHHHHh---Cccc-------cCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1111112 2210 012346789999999999999999885
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=166.38 Aligned_cols=170 Identities=19% Similarity=0.232 Sum_probs=106.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|||+.++|||||+.+|....+.....+.+...+. ..+..+. ....|.||||||++.|..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDG--------------RTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhh
Confidence 356999999999999999999987775444333321111 0011110 1134899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHH-HH-HHHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
+..+++.+|++|||+|+++....+... .| ..+. ..++|+|||+||+|+... ......+...... .
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~~~-----~ 136 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQGQA-----P 136 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhccCC-----C
Confidence 999999999999999998754433332 12 2222 246999999999998521 1111111000000 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...... ..|... + +.+++++|||++|.||.++|.+|+..+
T Consensus 137 v~~~~~-~~~a~~------------~-~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 137 ITPQQG-GALAKQ------------I-HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCHHHH-HHHHHH------------c-CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000001 111110 0 235899999999999999999998654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=158.24 Aligned_cols=145 Identities=26% Similarity=0.354 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh--
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~-- 872 (1324)
.|+++|++|+|||||+++|.+.... .+...++|+.+....+.+. ...++||||||+.++..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcchH
Confidence 5999999999999999999976542 2344555555443333221 23589999999877643
Q ss_pred ------hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
.....+..+|++|+|+|+.+.........+.. ..+.|+|||+||+|+...+ .
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~------~-------------- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS------E-------------- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc------c--------------
Confidence 23356778999999999998665554444443 4679999999999986311 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
. + . .....++|++||.+|.||.+|+.+|..++
T Consensus 125 -----~------~-~-------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 -----L------L-S-------------LLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -----c------c-c-------------ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 0 0 01236899999999999999999987643
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=188.93 Aligned_cols=149 Identities=26% Similarity=0.325 Sum_probs=110.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc----
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~---- 869 (1324)
|.|+|+|++|+|||||+++|++.... .....|+|.+.....+.+ ....|.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~----------------~~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW----------------LGREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE----------------CCcEEEEEECCCCCCcchh
Confidence 57999999999999999999977642 344566666544333322 224599999999987
Q ss_pred ----hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHH
Q 000735 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~ 945 (1324)
+......++..+|++|||||+.+++.......+.+|+..++|+|+|+||+|+...+
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-------------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-------------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------------------
Confidence 23334567788999999999999999888888888998999999999999964200
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 946 ~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.....+...|+ ..++++||.+|.||.+|++.|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00011222222 24789999999999999999875
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=165.81 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
|.+.|+|+|..|+|||||+++|.+..+... .+ |.......+. +....+.||||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELA----------------IGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 457799999999999999999987654321 11 1111111111 1223589999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcH-HHHHHHHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++..++..+|++|+|||+++.... .....+..+. ..++|+|||+||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 999999999999999999874211 2222332222 2579999999999985311 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...| ++..............+.+++|||++|.|+.+++++|+.
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 01122222 111000000000113568999999999999999999964
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=168.82 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=98.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh---
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 872 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~--- 872 (1324)
.|+|+|..++|||||+++|.+..+.....++++..+....+.+.. ....++||||||+..|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG--------------RVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC--------------EEEEEEEEeCCCcccCCccch
Confidence 489999999999999999998776544444433222211111111 012488999999876532
Q ss_pred -----hhhhccCcccceEEeeccccCCcHHHHHHH-HHHH------hcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 873 -----LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 873 -----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
++.+.+..||++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 244567889999999999875433333222 1221 246899999999998521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
......+.... ..+++++|||++|.||.+||..|+..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111111 13689999999999999999888754
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=179.44 Aligned_cols=162 Identities=23% Similarity=0.343 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC-----
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 866 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG----- 866 (1324)
.++.|||+|.+|+|||||+|+|++.. +-.+...|+|.+.-...+.+ +...|.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~----------------~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER----------------DGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE----------------CCeEEEEEECCCCCccc
Confidence 45569999999999999999999765 34456677777755444433 345699999999
Q ss_pred -----Ccchhhhhh-hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 867 -----HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 867 -----He~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
++.|+..+. ..+..||+++||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 455655543 56778999999999999999999999999999999999999999987320 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
....+.. .+...|... ++.|+|++||++|.||..|+..+...+
T Consensus 308 ---~~~~~k~---~i~~~l~~l--------------~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 308 ---TMEEFKK---KLRRKLPFL--------------DFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ---HHHHHHH---HHHHHhccc--------------cCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 1111111 122222211 347999999999999999999887654
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=162.95 Aligned_cols=156 Identities=22% Similarity=0.190 Sum_probs=102.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.+.|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....|.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~----------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVT----------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEE----------------ECCEEEEEEECCCChhhHHH
Confidence 3569999999999999999997554422 2222221111 111 11235899999999999999
Q ss_pred hhhccCcccceEEeeccccCCc-HHHHHHHHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.||++|||+|+++.-. ....+.|..+.. .++|++||+||+|+...+ +.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~--------------- 132 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------KA--------------- 132 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------CH---------------
Confidence 9999999999999999986321 122334433321 358999999999985311 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+.. ..++.. -....+.+++|||++|.||.+++.+|...+
T Consensus 133 ----~~i~~---~~~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 133 ----AEITE---KLGLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ----HHHHH---HhCccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111 112210 012346788999999999999999987643
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=164.68 Aligned_cols=156 Identities=22% Similarity=0.205 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|+|..++|||||+.+|....+.. ..+++..++ ..+. +....+.||||||+..|..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEE----------------ECCEEEEEEECCCCHHHHHH
Confidence 3569999999999999999998654432 222222211 1111 11235999999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHH-HHHHHHHH-Hh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..+++.+|++|||+|+++..... ....|..+ .. .++|+|||+||+|+... .+
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------~~---------------- 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MN---------------- 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------CC----------------
Confidence 999999999999999998743221 12222222 11 36899999999998531 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...| |+.. + ..+.+.+++|||++|+||.+++.+|...+
T Consensus 136 ---~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 ---AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ---HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01111122 2210 0 01345688999999999999999987543
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-16 Score=162.75 Aligned_cols=153 Identities=19% Similarity=0.159 Sum_probs=98.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+.+|.+..+.. ..+++...+. .+. +....|.||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVE----------------YKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEE----------------ECCEEEEEEECCCChhcchHHHH
Confidence 8899999999999999998764432 2222211211 111 11235899999999999999988
Q ss_pred ccCcccceEEeeccccCCcH-HHHHHHHHHH-h---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~ll~-~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..+|++|||+|+++.-.. .....+..+. . .++|+|||+||+|+.. ..+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~------------------- 117 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG------ALS------------------- 117 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc------CCC-------------------
Confidence 99999999999999763211 1122232222 2 2489999999999852 001
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...+....+ ..+..+.+++|||++|.||.++|.+|+..
T Consensus 118 ~~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 118 VEEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 0111111111111 01234578999999999999999998754
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-16 Score=168.09 Aligned_cols=158 Identities=15% Similarity=0.067 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+++|.+..+.....+.++.++....+.+... ....|.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987776555555544443222222110 012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHHh------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
..++.+|++|||+|+++.-....+..| ..+.. .++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~---------------- 128 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVK---------------- 128 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccC----------------
Confidence 999999999999999874333322222 33322 246899999999985211 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..........++ +++++|||++|.||.+||.+|+..+.
T Consensus 129 ---~~~~~~~~~~~~---------------~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 129 ---DDKHARFAQANG---------------MESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ---HHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000111111111 47899999999999999999986543
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=167.47 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=101.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.|+|||||+++|++..+.......+ .......+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999999776543222211 111111111110 0124889999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHHHHH-HHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..+|++|||||+++....+....| ..+ ...++|+|||+||+|+.... ..+ .
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-----~~v----~------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE-----RQV----P------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc-----ccc----c-------------
Confidence 99999999999999875333322222 122 22579999999999986310 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+...+ ... ..+++|++||++|.||.+|+.+|+..+.
T Consensus 125 ~~~~~~~~-~~~-------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-ELD-------------WNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hhh-------------cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000001 000 1257899999999999999999987654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=159.47 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|.+|+|||||+++|++..+.....+.+...+ ....... .....+.|||||||..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD--------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC--------------CEEEEEEEEECCChhhhhHHHH
Confidence 589999999999999999997765543333222111 1111110 0113489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHH-HHHHHHHH-H---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..++.+|++|+|+|+.+.-... ....+..+ . ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632111 11122212 2 257999999999998520 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0011111111 15899999999999999999987544
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=174.16 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++|||||+++|++..+.....+++. ++....+.+.. ....|+||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~--------------~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRG--------------EVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECC--------------EEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998777654433332 11111111111 013488999999999999998
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH------------hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~------------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~ 942 (1324)
.++..+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+.... ..
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~----~v----------- 131 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR----EV----------- 131 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc----cc-----------
Confidence 889999999999999874333322222 2221 1368999999999985210 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 943 ~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
....+...+... ..+++++|||++|.||.+||.+|+.++.
T Consensus 132 --------~~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 132 --------QRDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred --------CHHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 011111112110 1358999999999999999999987653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-16 Score=165.35 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|||..++||||||.+|....+.......++.++....+.++. ....|.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999997665443333333333222222111 01348999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHH-HHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+++.+|++|||+|+++....+.... +..+.. .++|+|||.||+|+.... .+ .
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~------~v-----------------~ 129 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR------QV-----------------A 129 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc------CC-----------------C
Confidence 999999999999999988544333332 233332 468999999999985210 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .++++.|||++|.||.++|.+|+..+
T Consensus 130 ~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 01111112222 25899999999999999999998644
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=162.21 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+.+|.+..+.....+.+...+....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 4899999999999999999988776555454443332222221110 12489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHH-HHHHHhc----CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..++.+|++|||+|+.+......... +..+... .+|+|+|+||+|+...+ .... ..
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~---~~------------ 128 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL---ME------------ 128 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc---cH------------
Confidence 99999999999999977322222222 2233222 35799999999985210 0000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......... .++++++||++|.||.+|+..|..++
T Consensus 129 --~~~~~~~~~~---------------~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 129 --QDAIKLAAEM---------------QAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred --HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0011111111 14789999999999999999998765
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=166.72 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+.+|.+..+......++..++....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 45999999999999999999987665433333333332222222210 1248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|+++....+.+..| ..+.. .++|+|||+||+|+...+. +.
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~------~~---------------- 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS------VA---------------- 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC------CC----------------
Confidence 9999999999999999875444444333 33332 4799999999999842110 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
......+... ..++++++||++|.||.+++..|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111110 125899999999999999999998776554
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=166.42 Aligned_cols=157 Identities=21% Similarity=0.163 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|||+.++|||||+.+|++..+.. ..+.++.+.....+.+.. ....|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 4569999999999999999999776532 122222111111111110 0124899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHH-HH-HHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIES-LN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~-ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
+..+++.+|++|||+|+++....+.+.. |. .+. ..++|+|||+||+|+... ..+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------- 139 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------- 139 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC-------------
Confidence 9999999999999999987544444432 22 222 235799999999998521 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
........... .+++|++||++|.||.+++.+|+..+
T Consensus 140 ----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 ----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 25799999999999999999998655
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=161.61 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|++|+|||||+.+|+...+.....+++.... ...+.+.. ....+.|||||||..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 599999999999999999997766443333322111 11111110 012478999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHH-H---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..+|++|+|+|++++...+....+ ..+ . ..++|+|||+||+|+...+ ...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~------------------ 125 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVS------------------ 125 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccC------------------
Confidence 999999999999999986554444332 222 2 2468999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
...+....... + ++++++||++|.||.+++.+|+..+..
T Consensus 126 -~~~~~~~~~~~-------------~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 126 -TEEGKELAESW-------------G--AAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred -HHHHHHHHHHc-------------C--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00011111111 1 589999999999999999999876643
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-16 Score=161.10 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+.+|.+..+.....+.+...+.. .+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG--------------KQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC--------------EEEEEEEEeCCCchhhhhccc
Confidence 59999999999999999999876654333332222111 111110 012489999999999998888
Q ss_pred hccCcccceEEeeccccCCcHHHH-H-HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++..+|++|||+|+++.-..... . ++..++. .++|+|||+||+|+...|. ....+..... ....
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~-----~~v~ 136 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQ-----EPVK 136 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccC-----CCcc
Confidence 889999999999999863222222 1 1222332 4799999999999863211 0000000000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
........... +.+++|+|||++|.||.+|+.+|+..
T Consensus 137 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 00111111111 23589999999999999999998753
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=161.92 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|..++|||||+.+|+...+.....+.+..... ..+..+. ....|+||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 35999999999999999999987665433333221111 1111110 11248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHH--HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..++..+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... ...+ ..+.... . ...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~~~~~---~--~~v 135 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKLKEKK---L--TPI 135 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHHhhcc---C--CCC
Confidence 99999999999999998854444432 2232332 36899999999998521 0000 0000000 0 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
............ +.+++++|||++|.||.+||..|+.
T Consensus 136 ~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 136 TYPQGLAMAKEI--------------GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CHHHHHHHHHHc--------------CCcEEEEecccccCCHHHHHHHHHH
Confidence 000111111111 2358999999999999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=162.07 Aligned_cols=160 Identities=10% Similarity=0.081 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+.+|++..+.....+++..++....+..... ...|.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--------------EITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCchhHHHhhH
Confidence 5899999999999999999987765544444333322122221110 12489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++....+.+. ++..++. ..+| |+|+||+|+...+.... ...
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~----~~~--------------- 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE----QEE--------------- 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh----hhh---------------
Confidence 9999999999999998743333322 2233332 3456 67899999853210000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+......+... + .+++++|||++|.||.+||.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~--~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------M--KAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00001111111 1 15899999999999999999987644
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=158.53 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+++|++..+.....+.+....... +... .....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT-VTVD--------------GKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE-EEEC--------------CEEEEEEEEeCCCcccccccch
Confidence 589999999999999999998876433333332222111 1111 0112489999999999988888
Q ss_pred hccCcccceEEeeccccCCcHHHH--HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..+|++|+|+|+++....+.. .++..+.. .++|+|||+||+|+...+. ....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN------TLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh------hhhhcccCCCcc------C
Confidence 888999999999999874332222 23333333 3599999999999864211 000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 01111112111 2348999999999999999998864
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=163.45 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....+.||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE----------------YKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE----------------ECCEEEEEEECCCCHhHHHHH
Confidence 459999999999999999997554432 1122111111 111 112358999999999999999
Q ss_pred hhccCcccceEEeeccccCCc-HHHHHHHH-HHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~-ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
..+++.+|++|||+|+++.-. ......|. ++.. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 999999999999999976211 11122222 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m 1007 (1324)
..+.. ..++. +.. ...++++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~---~l~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTE---KLGLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHH---HhCCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 01111 11221 000 12467889999999999999999987665544
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=193.85 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=112.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc---
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~--- 869 (1324)
.|+|+|+|++|+|||||+++|++.... .....|+|.+.-...+. +....|+||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~----------------~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE----------------WAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE----------------ECCEEEEEEeCCCcCCCCc
Confidence 456999999999999999999976532 23456777654332222 2234599999999753
Q ss_pred -----hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
|......++..||++|||||+.+|+.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4555667788999999999999999998888889999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.....+...|+ + .+++|||++|.||.+|+.+|+..+.
T Consensus 400 ---------~~~~~~~~lg~-----------~---~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 400 ---------YDAAEFWKLGL-----------G---EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ---------hhHHHHHHcCC-----------C---CeEEEECCCCCCchHHHHHHHHhcc
Confidence 00011212232 1 3478999999999999999987653
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-16 Score=166.86 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=102.1
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhhccC
Q 000735 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 879 (1324)
Q Consensus 800 lGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~ 879 (1324)
||+.++|||||+.+|.+..+......++..++....+.++. ....|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997665443333332222222221111 1134999999999999999999999
Q ss_pred cccceEEeeccccCCcHHHHHHH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHH
Q 000735 880 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1324)
Q Consensus 880 ~aDiaILVVDa~~Gv~~QT~E~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~ 956 (1324)
.+|++|||+|+++..+.+.+..| ..++. .++|+|||+||+|+... ... . ..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-----~v~-----~--------------~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-----KVK-----A--------------KSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-----cCC-----H--------------HHH-
Confidence 99999999999987655544433 33433 46999999999998420 000 0 000
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 125899999999999999999997654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=158.56 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--cccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t--~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.|+|||..++|||||+.+|... .+.....+++..++....+++.. .....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 5899999999999999999864 33333333332333222222210 01124899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
+...+..+|++|+|+|+++.........| ..+.. .++|+|||+||+|+... ..+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~--------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK------AEVTD--------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cCCCH---------------
Confidence 99999999999999999874332222222 33332 36999999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+... ..++++++||.+|.||.+|+..|...
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011110 12579999999999999999998754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=160.86 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
.|+|+|++++|||||+++|.+..+..+ ..+.+...+....+.+... ...|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER--------------VVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE--------------EEEEEEEECCCchhhhhhh
Confidence 499999999999999999998776532 2222221111111111110 0237899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHH-HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
...++.+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... .... ..+ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~-----~~~~-~~v-------------~ 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ-----DRSL-RQV-------------D 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc-----cccc-Ccc-------------C
Confidence 8889999999999999874333222 23333433 36899999999998521 0000 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...+....... .++++++||++|.||.+|+.+|...+-
T Consensus 129 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADEI---------------KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 257899999999999999999986653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=160.45 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC---
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH--- 867 (1324)
..|-||++|..|+||||||++|++.. ...+..+|.||.|..+.+. ..+.|+|.||+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-------------------~~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-------------------DELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-------------------CcEEEEeCCCcccc
Confidence 45679999999999999999999866 6678899999999876653 23889999994
Q ss_pred -------cchhhhhhhccC---cccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHH
Q 000735 868 -------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 868 -------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
+.+..+...++. ...++|+|||+.|++....++.+.+|...++|++|++||+|.+.. .
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~------~------ 151 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK------S------ 151 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh------h------
Confidence 223444444443 267899999999999999999999999999999999999999731 1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
+....+..+...| ++. +.....++.+|+.++.||++|...|..++.
T Consensus 152 ---------~~~k~l~~v~~~l---~~~---------~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 152 ---------ERNKQLNKVAEEL---KKP---------PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---------HHHHHHHHHHHHh---cCC---------CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1111222333222 111 111222888999999999999999987764
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=160.68 Aligned_cols=155 Identities=23% Similarity=0.248 Sum_probs=100.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+.+.|+|+|+.|+|||||+++|.+..+... ....|...... .+....+.||||||+..|..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIRP 73 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 356799999999999999999987543211 11111111000 11123589999999999999
Q ss_pred hhhhccCcccceEEeeccccCCc-HHHHHHHHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++...+..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ...
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~-------------- 133 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------APA-------------- 133 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CCH--------------
Confidence 99889999999999999976321 1222232222 2346999999999998521 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+... .++.. + ....++++++||++|.||.+++.+|+.
T Consensus 134 -----~~i~~~---l~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 134 -----EEIAEA---LNLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----HHHHHH---cCCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 111111 12210 0 113457899999999999999999863
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=195.01 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=114.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe---- 868 (1324)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+ ....++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----------------~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----------------DGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----------------CCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 344566665544333322 22458899999953
Q ss_pred ------chhhhhh-hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 869 ------SFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 869 ------~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
.|..++. .++..||++|||||++++++.|+...+..+...++|+|||+||+|+... .....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~~----- 581 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQR----- 581 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHHH-----
Confidence 2444433 4578899999999999999999999998888889999999999998621 10000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
+...+... +. .-..+++++|||++|.||.+|+..+...+.
T Consensus 582 -------------~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 582 -------------LERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred -------------HHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111110 00 012468999999999999999999887654
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=160.99 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+.+|....+.....+.+...+. ..+..+. ....|+||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDG--------------NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCCccccccch
Confidence 4899999999999999999987775444333321111 0111110 113589999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHH-H-HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++.-..+.. . ++..++. .++|+|||.||+|+... . . .+..+... ....
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~-----~-~---~~~~~~~~----~~v~ 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD-----K-Q---YLADHPGA----SPIT 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC-----h-h---hhhhccCC----CCCC
Confidence 999999999999999885554443 2 3444442 46999999999998521 0 0 00000000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...........+ ..+++.|||++|.||.++|..|+..+
T Consensus 135 ~~~~~~~a~~~~--------------~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 TAQGEELRKQIG--------------AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHcC--------------CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 001111111111 23699999999999999999987643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-16 Score=162.35 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=77.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|||+.++|||||+.+|.+..+.....+ .+|..+..+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP----TTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc----cCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 89999999999999999997655433222 222211111 112245899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHH-HHHHHHHHH--hcCCcEEEEeeccccc
Q 000735 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRL 922 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll~--~~~vP~IVaINKiDl~ 922 (1324)
+++.+|++|||||+++..... ....|..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998743222 222233332 2579999999999985
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-16 Score=161.33 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC----cchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH----e~F~ 871 (1324)
.|+|+|++|+|||||+++|.+.... +...+.+.+ .. ..+|||||+ ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~------------------~~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEF------------------ND--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEE------------------CC--CCcccCCccccCCHHHH
Confidence 3999999999999999998754211 111111111 01 126999996 3343
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..++..+|++|||||++.+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 333455789999999999998765544333322 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
..+...+...++ ..|+|+|||++|.||.+|+..|..++...
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 112223333332 25999999999999999999998766443
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=161.06 Aligned_cols=158 Identities=21% Similarity=0.216 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+++|.+..+.......++.+.....+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN--------------KIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHhhHH
Confidence 599999999999999999998776543333333222211121111 012488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..+..+|++|||+|+++.-....+..| ..+. ..++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~~---------------- 125 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVDS---------------- 125 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCCH----------------
Confidence 999999999999999874333322222 2222 235899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
... ..+... ..++++++||++|.||.++|.+|+..+..
T Consensus 126 -~~~-~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 126 -NIA-KSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHH-HHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 000 011110 12489999999999999999998876543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=158.05 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||+.++|||||+.+|++..+.....++++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 5899999999999999999987776544444443333222222110 12488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++..+|++|+|+|+++.-..+.+..| ..+. ..++|+|+|.||+|+... +...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~------------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG------------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC-------------------
Confidence 999999999999999874322222222 2222 236899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
......+... + .+++++|||++|.||.++|.+|+.+
T Consensus 125 -~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 -DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0001111111 1 1589999999999999999998754
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=152.56 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=106.7
Q ss_pred EEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh-----
Q 000735 799 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 872 (1324)
Q Consensus 799 IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~----- 872 (1324)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999987654 34444444443333322110 24699999999887753
Q ss_pred --hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 873 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 873 --~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.....++.+|++|||+|+..+....+..++..+...++|+|||+||+|++.. ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~~~-------------- 125 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEEEL-------------- 125 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHHHH--------------
Confidence 3345778899999999999988777776667777789999999999998631 110000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.. ...... .....++++++||.+|.|+.+|+++|..+
T Consensus 126 -~~-~~~~~~-------------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 126 -LE-LRLLIL-------------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -HH-HHHhhc-------------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 00 000000 11245799999999999999999998754
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=158.08 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=96.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-hhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 875 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~-F~~~r~ 875 (1324)
|+|+|+.++|||||+.+|+...+.....+.+ ..+....+.++ .....+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTID--------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEEC--------------CEEEEEEEEECCCCcccccchHH
Confidence 8999999999999999998654432221211 11111111111 1112488999999985 455677
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHH-----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
+.++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ..+ .
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v-----------~---- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQV-----------S---- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------Ccc-----------C----
Confidence 788999999999999886443333322 2222 237999999999998521 000 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccC-CChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG-EGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tG-eGI~eLl~~L~~l~ 1003 (1324)
........... .++++++||++| .||.++|..|+..+
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEGEKLASEL---------------GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHHHHHHHHc---------------CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00011111111 158999999999 49999999988654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=158.97 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=99.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|..++|||||+++|.+. +..... ..+|...... .+....++|||||||..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~~~----~t~g~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKKVA----PTVGFTPTKL--------------RLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCcccc----CcccceEEEE--------------EECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999865 221111 1222211110 112245899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHH-HHHHHHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..||++|||||+++.-..+ ....+..+.. .++|+|||+||+|+.... +
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------- 117 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------- 117 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C-------------------
Confidence 999999999999998743222 2233333322 478999999999986321 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccC------CChhhHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1000 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tG------eGI~eLl~~L~ 1000 (1324)
...+...+....+. ...+..++++++||++| .||.+.|.||+
T Consensus 118 ~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 01111111111110 01123578999999998 89999999986
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=158.40 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|.+|+|||||+++|.+..+.....+.+...+ ...+.+. .....+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID--------------GRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC--------------CEEEEEEEEeCCCcccchhhhH
Confidence 489999999999999999986654322212111110 0001110 0112478999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..+..+|++|||+|+++.-..+....| ++....++|+|+++||+|+... ..+ .
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~---~------------- 125 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQV---S------------- 125 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------Ccc---C-------------
Confidence 999999999999999874332222222 1112347999999999998521 000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......... + +.++++++||++|.||.+++.+|+..+
T Consensus 126 -~~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 126 -REDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred -HHHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 1 236899999999999999999987543
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=178.33 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=98.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC-------
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH------- 867 (1324)
|.|+|+|++|+|||||+++|++..+......+.|.++....+.+. ....++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999876443333444444322222111 1235999999997
Q ss_pred --cchhhhhhhccCcccceEEeeccccCCcHHHH----HHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 868 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 868 --e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
+.|..++ ..+..+|++|+|||+++....... ..+..+...++|+|+|+||+|++.. .
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~---------- 317 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------P---------- 317 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------H----------
Confidence 2343333 247789999999999986544333 2233333347899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+. .+.. ...++|+|||++|.||.+|+.+|..+
T Consensus 318 ------------~v~-~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 ------------RIE-RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ------------hHH-HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 000 0100 11368999999999999999988653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=155.35 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=89.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc-----ch
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe-----~F 870 (1324)
.|+|+|++|+|||||+++|++..+.. .+ | ++.. + ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~--t--~~~~-------------------~---~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KK--T--QAVE-------------------Y---NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--cc--c--eeEE-------------------E---cCeeecCchhhhhhHHHH
Confidence 48999999999999999998664321 00 1 1100 1 12689999972 34
Q ss_pred hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..++ ..++.+|++|||+|++++...++..++.. ...|+|+|+||+|+... ...
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~------------------ 106 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVD------------------ 106 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccC------------------
Confidence 4443 35789999999999998877665443333 24599999999998520 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 107 -~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 -IERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -HHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 001111122222 23789999999999999998874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=154.31 Aligned_cols=153 Identities=20% Similarity=0.132 Sum_probs=100.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+|+|+.++|||||+++|++..+.....+.+. +.....+.+.. ....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHHH
Confidence 89999999999999999997665433322211 11111111110 0134889999999999999999
Q ss_pred ccCcccceEEeeccccCCcHH-HHHHHHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+..+|++|+|+|+++.-... ....+..+.. .++|++||+||+|+...+. ..
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ----VS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce----ec-------------------
Confidence 999999999999987632211 2222222221 4799999999999863110 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...+...+ ++++++||++|.||.+|+.+|+..
T Consensus 124 ~~~~~~~~~~~~---------------~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 124 KEEGKALAKEWG---------------CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHhh
Confidence 011112222111 589999999999999999998753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=163.74 Aligned_cols=157 Identities=22% Similarity=0.168 Sum_probs=104.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|||+.++|||||+++|++..+.......++.+++...+.+.. ....|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~--------------~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN--------------KPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999998766543333332222211121111 00248899999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
...++.+|++|||+|+++....+.+..| ..+. ..++|+|+++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999874433333222 2222 246899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......+..+ .++++++||++|.||.++|.+|+..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111112111 25899999999999999998887654
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=159.31 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=116.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.|...|++||..++|||||+-++....+.... ...||+.|+...... +. ....|.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~----e~TIGaaF~tktv~~--------~~--~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI----EPTIGAAFLTKTVTV--------DD--NTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc----ccccccEEEEEEEEe--------CC--cEEEEEEEEcCCccccc
Confidence 46677999999999999999999988887653 345676665432110 00 01358899999999999
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHH-HHHHhc---CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~~---~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.+...+++.++.||||+|+++--..++...| ..|... ++-|.+|.||+|+... +
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R------------------ 126 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----R------------------ 126 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----c------------------
Confidence 9999999999999999999986555554444 445443 3446679999998620 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
...+.+.......+| ..|+.+||+||.||.+||..|...++.
T Consensus 127 -~V~~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 127 -EVEFEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred -cccHHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhccC
Confidence 011223333333444 489999999999999999999876654
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-16 Score=178.67 Aligned_cols=132 Identities=26% Similarity=0.337 Sum_probs=102.3
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCc------------c----cccccCceeeeeeeeEeccccccchhhhccccc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN------------V----QEGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~------------v----~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~ 852 (1324)
..++|| +.|+.|||||||||.++|.... + .+...+|||+...+.++.++........++...
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 457888 8999999999999999997421 1 122346777776665554443222222222222
Q ss_pred cccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+..-|++||.|||.+|++.+...++++|++++|||...|+..||...|+++....+.-++++||+|+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3334569999999999999999999999999999999999999999999999999888889999999984
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-16 Score=172.27 Aligned_cols=224 Identities=21% Similarity=0.284 Sum_probs=157.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEecccccc------chhhh---c------cc-----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR------ERTRE---L------KA----- 850 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~e~i~------~r~~~---v------~~----- 850 (1324)
.++|+-+|||-|||||++.+|.+-. |...-.+.||..+|...-...... -.+.. . .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 3568999999999999999997643 333334678888775332211100 00000 0 00
Q ss_pred ccccc-CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-CcHHHHHHHHHHHhcC-CcEEEEeeccccccCccc
Q 000735 851 NATLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKT 927 (1324)
Q Consensus 851 ~~~~~-~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~~-vP~IVaINKiDl~~~w~~ 927 (1324)
...++ .+++.|+|+|||.-+...+..|....|.++|+|.++.. .+|||-+||.....+. ..+||+-||+|++..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e--- 194 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE--- 194 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH---
Confidence 00111 24689999999999999999999999999999999875 6899999998887776 468899999999621
Q ss_pred CCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhH
Q 000735 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 928 ~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m 1007 (1324)
+ .++ ...+.|..++. |-+ ....|+||+||--+.||+-+.++|+..++-+.
T Consensus 195 ----~--~A~------------eq~e~I~kFi~--~t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 195 ----S--QAL------------EQHEQIQKFIQ--GTV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ----H--HHH------------HHHHHHHHHHh--ccc----------cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 0 000 11223333332 111 23569999999999999999999998887654
Q ss_pred HhhhhcccccceeEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcc
Q 000735 1008 VEKLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1324)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~i~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g 1053 (1324)
. ++..+.++.|+.+|.+.- .|-++.+.+..|+|++||.|-+-+
T Consensus 245 R---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 245 R---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred c---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 4 356778899999887643 466777889999999999997643
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=164.31 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|||..++|||||+++|.+..+.....++++.++....+.+.. . ....|+||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~----------~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP----------G---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC----------C---CEEEEEEEeCCcchhHHHHH
Confidence 4699999999999999999998776543333332222211111100 0 01248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHH-HHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
...++.+|++|||+|+++.-....+.. +..+. ...+|+||++||+|+.... ...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~----------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT----------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC-----------------
Confidence 999999999999999987422222222 12221 2357899999999985210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
.... ..+... ++ ++++++||++|.||.+++.+|+..+...
T Consensus 129 --~~~~-~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 --REEA-EKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred --HHHH-HHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001 111111 11 6899999999999999999998766544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-15 Score=172.08 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=100.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-------
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~------- 869 (1324)
|+|||.+|+||||||++|++........+++|..+....+.+. ....|+||||||...
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---------------~~~~~~i~D~PGli~ga~~~~g 225 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---------------DYKSFVIADIPGLIEGASEGAG 225 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---------------CCcEEEEEeCCCccCCCCcccc
Confidence 9999999999999999999765444444444444332222211 113599999999632
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHH-HHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
+...+.+.+..|+++|+|||+++.-..+....| ..|.. .++|+|||+||||++..+ ... .
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~---~----- 291 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER---E----- 291 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH---H-----
Confidence 334455677789999999999864333344333 33333 368999999999986311 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 944 v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+...+... .+++|+|||++|+||.+|+.+|..++.
T Consensus 292 ---------~~~~~~~~~~---------------~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 ---------KRAALELAAL---------------GGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred ---------HHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000011111 157999999999999999999987654
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=156.75 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+.+|.+..+.....+.+ .+.....+..+. ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 48999999999999999998766543332221 111111111110 012488999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHH--HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+.+....+.. .++..+.. .++|+|||+||+|+... ......+..... ....
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~-----~~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGE-----KPVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCC-----CCcC
Confidence 999999999999999875433332 23434433 46999999999998521 111000000000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+....... +..++++|||++|.||.+|+..++
T Consensus 136 ~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11111111111 124899999999999999998875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=158.17 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|+.++|||||+.+|....+.....+.+...+. ..+..+. ....|.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~--------------~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECC--------------EEEEEEEEECCCchhhHhhh
Confidence 45999999999999999999987765443333322111 1111110 11248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHH-HHH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
..+++.+|++|||+|+++....+.+ ..| ..++. .++|+|||+||+|+... ......+..+... ..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~-----~v 139 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQT-----PV 139 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCC-----CC
Confidence 9999999999999999885444443 222 33332 36899999999998521 1100000000000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCC-hhhHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeG-I~eLl~~L~~ 1001 (1324)
............| .++++.|||++|.| |.++|..++.
T Consensus 140 ~~~~~~~~a~~~~--------------~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 140 SYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CHHHHHHHHHHcC--------------CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 0011111122221 24899999999998 9999988775
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=157.38 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+.+|.+..+.....+.+..... ..+.++. ....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDE--------------QRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECC--------------EEEEEEEEECCCchhhhhcch
Confidence 5999999999999999999987765444333322211 1111111 112489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHH-H-HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+|++|||+|+++.-..+.. . ++..++. .++|+|||+||+|+... ......+..+.. ....
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~------~~~~~~~~~~~~-----~~v~ 136 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD------LSTLMELSHQRQ-----APVS 136 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC------hhHHHHHHhcCC-----CCCC
Confidence 999999999999999875444432 2 2233332 36899999999998521 000000000000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCC-hhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeG-I~eLl~~L~~ 1001 (1324)
...........| .++++.|||++|+| |.++|..++.
T Consensus 137 ~~e~~~~a~~~~--------------~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQGCAIAKQLG--------------AEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHHHHHHhC--------------CCEEEECccCcCCcCHHHHHHHHHH
Confidence 011111111121 24799999999995 9999988876
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=154.11 Aligned_cols=158 Identities=23% Similarity=0.302 Sum_probs=117.2
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCccc-------ccccCc-----eeeeeeeeEeccccccchhhhccccccccCC
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~-------~ge~gG-----ITq~iga~~~~~e~i~~r~~~v~~~~~~~~~ 857 (1324)
...+...|+|+|..++||||++.+|...... .....+ +.+++|...+. ...
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-----------------~~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-----------------EDT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-----------------Ccc
Confidence 3567778999999999999999999865421 111111 11223322221 125
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcC-CcEEEEeeccccccCcccCCCchHHHH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~-vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1324)
+++|+|||||.+|.-||.-.++.++++|||||.+.+......+.+..+...+ +|++|++||.|+...|.+
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 7999999999999999999999999999999999987776678888888888 999999999999876632
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 937 L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..|...|.... -.+|+|+++|..++|+.+.|..|...
T Consensus 140 ----------------e~i~e~l~~~~-------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 140 ----------------EKIREALKLEL-------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----------------HHHHHHHHhcc-------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 12222222211 14799999999999999988877643
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=155.39 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=93.8
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch-------h
Q 000735 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-------T 871 (1324)
Q Consensus 799 IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F-------~ 871 (1324)
|+|+.|+|||||+++|.+..+..+...+.|.++....+.+.. ...++||||||+... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 689999999999999998765334444555443322221110 345899999997432 1
Q ss_pred hhhhhccCcccceEEeeccccCC------cHHHHH-HHHHHH----------hcCCcEEEEeeccccccCcccCCCchHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGL------EPQTIE-SLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv------~~QT~E-~l~ll~----------~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
....+.+..+|++|+|+|+.+.. ...... ++..+. ..++|+|||+||+|+... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 138 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EEL- 138 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hHH-
Confidence 12234567799999999998763 122222 222221 147999999999998621 000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
......... .....+++++||++|.||.+|+.+|+.+
T Consensus 139 ------------------~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 139 ------------------EEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000000 0123579999999999999999988654
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=188.57 Aligned_cols=154 Identities=24% Similarity=0.300 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+.++|+++||+|+|||||+++|++.+...+...|+|.+.....+.+ ....++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~----------------~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST----------------TDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc----------------CceEEEEEECCCcccccc
Confidence 3467999999999999999999988777777888887654433332 224599999999998854
Q ss_pred hh----------hhc--cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 873 LR----------SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 873 ~r----------~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
.. ..+ ...+|++|+|||+++... ....+.++...++|+|+|+||+|+.. ...+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~------~~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE------KQNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh------ccCcH------
Confidence 21 112 246899999999988533 34455677788999999999999852 11110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+. .|.+. + .+|+||+||.+|.||++|+..+....
T Consensus 132 ---------id~~----~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------IDID----ALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HHHH----HHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0011 11110 1 25899999999999999999887654
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-15 Score=162.70 Aligned_cols=170 Identities=17% Similarity=0.133 Sum_probs=106.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|||..++|||||+.+|.+..+.....+.|...+. ..+.+.. ....|.||||||++.|..+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~--------------~~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEE--------------QRVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 356999999999999999999987776544444322211 1111110 0124899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHH--HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~--E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
+..+++.+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ......+..+.. ..
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~-----~~ 146 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQ-----AP 146 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccC-----Cc
Confidence 99999999999999999875444331 22333432 36899999999998421 000000000000 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCC-ChhhHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGe-GI~eLl~~L~~l~ 1003 (1324)
............+| ..+++.|||++|. ||.++|..|+..+
T Consensus 147 Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 147 ISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 00111222222222 1268999999998 8999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-15 Score=155.92 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=114.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|.|+|.+|+|||+|++++.+..+....... ||+.++.-+..- .-....+.||||.|++.|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~V----------d~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQV----------DDRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEE----------cCeEEEEEEEecccHHHhhhcc
Confidence 45999999999999999999987765544333 455444332110 0011248999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHHH--HHHhc------CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--ll~~~------~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
...++.+|+++||+|.++.-...+++.|+ .|... ..||||+.||||+..+ .+-.
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~------~~r~------------ 137 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG------KSRQ------------ 137 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC------ccce------------
Confidence 99999999999999999866666776664 33332 3699999999998532 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
............. +++|+|.|||+.+.||.+.|..+.+..
T Consensus 138 ---VS~~~Aq~WC~s~--------------gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 138 ---VSEKKAQTWCKSK--------------GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ---eeHHHHHHHHHhc--------------CCceeEEecccccccHHHHHHHHHHHH
Confidence 0012233334333 468999999999999999999887654
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=180.68 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
.+.|+|+|++|+|||||+++|++..+. .....|+|.++....+.+. ...++||||||+..|..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 356999999999999999999986642 3445566665443333222 23589999999977654
Q ss_pred h--------hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 873 ~--------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
. ....+..+|++|+|||++++...+....|.. ..++|+|||+||+|+...+ .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------D------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------h------------
Confidence 2 2235778999999999999877666555554 4578999999999986210 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+. . ....++|+|||++|.||.+|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=157.52 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
..|+|||..|+|||||+.+|++..+. ....+.+..++....+.+... ...+.||||+|...|..+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~--------------~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ--------------EKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe--------------EEEEEEEecCCccccccc
Confidence 45999999999999999999987765 444343332222111111110 023889999999999988
Q ss_pred hhhccCcccceEEeeccccCCcHHHH-HHHHHHH-hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~ll~-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
+..++..||++|||+|+++....+.. .++..+. ..++|+|||+||+|+...... . .. .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-----~----~~-----------~ 130 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-----Y----EV-----------Q 130 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-----c----cc-----------C
Confidence 88889999999999999774222222 2223332 236999999999998521100 0 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+ ...+++ ..++++||.+|.||.+|+..|+..+
T Consensus 131 ~~~~---~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 131 PDEF---CRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHHH---HHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 0001 111121 1458999999999999999987654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=174.42 Aligned_cols=88 Identities=36% Similarity=0.467 Sum_probs=72.7
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchhh
Q 000735 507 EKKMSKQVREMQEALAR-RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE-KLLKKKQEGKLLTGK 584 (1324)
Q Consensus 507 ~~k~~~~~~~~~e~~~~-~~~~ee~~~reEEe~~~~eEEer~~~ee~er~~~e~~~~k~~~~ke-k~~~~k~e~k~~~~k 584 (1324)
...|+++++++|+++++ .|++||+.+|++||++++++++++.+|.++++++.+++++++++.+ ++++.+|++. +
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~----~ 291 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEE----A 291 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHH----H
Confidence 67788888888877766 6677888899999999999999999999999999999999999988 9999999985 5
Q ss_pred HHHHHHHHHHHHHH
Q 000735 585 QKEEARRLEAMRNQ 598 (1324)
Q Consensus 585 ~~~e~~~~~~~~~~ 598 (1324)
++.++.+++++..+
T Consensus 292 a~aea~l~~ll~sg 305 (1064)
T KOG1144|consen 292 ALAEAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHHHHhcC
Confidence 55555555555544
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=173.94 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=100.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-----
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~----- 869 (1324)
|.|+|+|.+|+|||||+++|++..+......+.|.+.....+.+. ....++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCHH
Confidence 779999999999999999999876554444444444322222111 112588999999743
Q ss_pred ----hhhhhhhccCcccceEEeeccccCCcHHHH----HHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
|... ...+..+|++|+|||+++....... ..+..+...++|+|+|+||||++..+ .
T Consensus 263 lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~------~--------- 326 (426)
T PRK11058 263 LVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF------E--------- 326 (426)
T ss_pred HHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch------h---------
Confidence 3332 3356789999999999986543333 33444444579999999999986210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+. ....++ ..+|+|||++|.||.+|+.+|...+.
T Consensus 327 --------~~~~-----~~~~~~--------------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --------PRID-----RDEENK--------------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --------HHHH-----HHhcCC--------------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0000 001111 12588999999999999999987664
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=170.95 Aligned_cols=152 Identities=22% Similarity=0.300 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~---- 869 (1324)
-|+|||.+++||||||++|+.........+++|. ++|...+. . ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~--~---------------~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD--D---------------GRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC--C---------------ceEEEEEeCCCcccCCcc
Confidence 3999999999999999999976543333333333 33333221 1 13599999999742
Q ss_pred ---hhhhhhhccCcccceEEeeccccC---CcHHHHHHH-HHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHH
Q 000735 870 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l-~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L 937 (1324)
+.....+.+..||++|+|||+++. ...+....| ..|.. .+.|+|||+||||++.. ..
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----- 290 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----- 290 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH-----
Confidence 233445566779999999999864 122233333 22322 36899999999998621 00
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 938 ~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+..+...+... + .+++|+|||++|.||.+|+.+|..++
T Consensus 291 --------------~~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 --------------LAELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --------------HHHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 01111122111 0 14799999999999999999987654
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=159.41 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=109.8
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG 866 (1324)
....|+..|+|||.+|+|||||.|.+.++.+..-. .-++++++.+.+.. ...++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-----------------~eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-----------------GETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-----------------CceEEEEecCCc
Confidence 34568888999999999999999999988765321 12223333322221 124699999999
Q ss_pred Ccc------------hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHh-cCCcEEEEeeccccccCcccCCCchH
Q 000735 867 HES------------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1324)
Q Consensus 867 He~------------F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~-~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1324)
... |.....+.+..+|++|+|+|+++.-.+..-..|..|.. .++|-|+|+||+|.+..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--------- 200 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--------- 200 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh---------
Confidence 321 22233456788999999999986222222233444444 46999999999998621
Q ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHHHHcCCchhhhh-cccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 934 VKAIKQQNTDVQN-EFNMRLVQIVTQLKEQGMNTELYY-KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 934 ~~~L~~q~~~v~~-ef~~~l~~I~~~L~e~Gl~~e~~~-~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...|......+.+ .+......+...+.. ......| ....|..+-.+|++||++|.||.+|.++|+..+
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1111111111110 000001111111111 1111111 112356677899999999999999999998654
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=155.64 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+...|+|+|..++||||||.+|....+.. +...+|..... ..+....++|||.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEeccccccccc
Confidence 44569999999999999999998654332 11122211111 112234599999999999999
Q ss_pred hhhhccCcccceEEeeccccCC-cHHHHHHHHHHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++..++..+|++|+|||+++.- .....+.|..+. ..++|++|++||+|+... .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch---------------
Confidence 9999999999999999998632 244454444432 246999999999998631 01
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...|....+. ....+.++++||.+|+||.+.++||...
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11222222212111 1356899999999999999999999754
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=153.67 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=116.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+...|+|+|..|+|||.|+.+|....+......+|..++..-.+.++... ..|.||||.|++.|..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRT 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhh
Confidence 44569999999999999999999988887776666666554444443211 2499999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHH-HHH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
++..+++.|+++|||+|++.--....+..| ..+ ...++|.++|.||+|+...|.-.
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~-------------------- 133 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS-------------------- 133 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--------------------
Confidence 999999999999999999874333333332 122 23578999999999986432110
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCcee-EEeCCCccCCChhhHHHHHHHHHHHhH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~-vVpvSA~tGeGI~eLl~~L~~l~~~~m 1007 (1324)
..........++ +| +++|||+.+.||.+.|..|...+...+
T Consensus 134 ---~~~a~~fa~~~~---------------~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 134 ---TEEAQEFADELG---------------IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ---HHHHHHHHHhcC---------------CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 011111122222 34 999999999999999988876554433
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-15 Score=151.91 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.++|||..|+|||+||-+++...++.-...+|..+.|+..+.++... ..|+||||.||++|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 48999999999999999999888887666777788888777665321 2499999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+-+||||+|++..-+..-+.+| ++....|+-|+++.||+|+..- ..+ .
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r------R~V-----------------s 130 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR------REV-----------------S 130 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc------ccc-----------------c
Confidence 999999999999999874333333332 2333467889999999998621 111 1
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
-++......++|| .++.+||+|++||.+.|..+...+
T Consensus 131 ~EEGeaFA~ehgL---------------ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 131 KEEGEAFAREHGL---------------IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHcCc---------------eeehhhhhhhhhHHHHHHHHHHHH
Confidence 1233344455654 677999999999999987765443
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=151.78 Aligned_cols=165 Identities=19% Similarity=0.152 Sum_probs=120.1
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
..+|...|++||..++|||||+.++++..++..+...|..++-...+.+.... ..|.||||+|++.
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~--------------vrLQlWDTAGQER 83 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------VRLQLWDTAGQER 83 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE--------------EEEEEEecccHHH
Confidence 34565679999999999999999999999988777777666555444333211 3599999999999
Q ss_pred hhhhhhhccCcccceEEeeccccC-CcHHHHHHHHHHHhc----CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
|..+...+++.+.+||+|+|+++- -..+|..+|.-++.. ++-+++|.||.||... +...
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---------rqvs------- 147 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---------RQVS------- 147 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---------hhhh-------
Confidence 999999999999999999999874 335666677666543 2557789999999731 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
..+-.....++ .+-|+.+||++|.||..||..|...++..
T Consensus 148 -------~eEg~~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 148 -------IEEGERKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred -------HHHHHHHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 00000111222 24789999999999999999887666543
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=175.15 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc------
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~------ 869 (1324)
-|+|||.+|+||||||++|++........+++|..+....+.+. ...|+|+||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~----------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG----------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC----------------CeEEEEEECCCCccccchhh
Confidence 39999999999999999999766544444555554433333221 23599999999532
Q ss_pred -hhhhhhhccCcccceEEeeccccC---CcH-HHHHHH-----HHH----------HhcCCcEEEEeeccccccCcccCC
Q 000735 870 -FTNLRSRGSGLCDIAILVVDIMHG---LEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G---v~~-QT~E~l-----~ll----------~~~~vP~IVaINKiDl~~~w~~~~ 929 (1324)
......+.+..||++|+|||+++. ..+ ..+..| .++ ...+.|+|||+||||++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 122344567789999999999741 111 112221 122 2246899999999998521
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
.. + ...+...+... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~e----l--------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -RE----L--------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HH----H--------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0 01111122221 2489999999999999999999877654
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=147.50 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc--ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-----
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~----- 869 (1324)
|+|+|+.|+|||||++.|.+.... .....+.|..+..+.+ . ..++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-----------------CeEEEecCCCccccccCH
Confidence 899999999999999999953322 1122223332211111 1 2599999999754
Q ss_pred -----hhhhhhhcc---CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 870 -----FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 870 -----F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
|..+...++ ..++++++|+|..+..+......++.+...++|+++++||+|++.. ...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-------~~~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-------SEL------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-------HHH-------
Confidence 333333333 3467899999999888888888888888889999999999998521 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
......+...+... ...++++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~~-------------~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKLF-------------EIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHhc-------------cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 00001111112111 134689999999999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=157.17 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=79.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
|.|+|+|+.|+|||||+.+|....+.... ..++..++.+++... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 56999999999999999999977554322 223333332222110 112459999999999999998
Q ss_pred hhccCcc-cceEEeeccccCC--cHHHHHHHHHH----H--hcCCcEEEEeecccccc
Q 000735 875 SRGSGLC-DIAILVVDIMHGL--EPQTIESLNLL----K--MRNTEFIVALNKVDRLY 923 (1324)
Q Consensus 875 ~rg~~~a-DiaILVVDa~~Gv--~~QT~E~l~ll----~--~~~vP~IVaINKiDl~~ 923 (1324)
..+++.+ +++|||||+.+.. ...+.++|..+ . ..++|+|||+||+|+..
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 8889988 9999999998852 12233333211 1 24799999999999863
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=171.51 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-------
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~------- 869 (1324)
|+|||.+|+||||||++|++........+++|..+....+.+.. ...|+|+||||...
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchhh
Confidence 99999999999999999997765444455555544333332211 12499999999532
Q ss_pred hhhhhhhccCcccceEEeecccc----CCcHHHHHHHHHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~----Gv~~QT~E~l~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
+...+.+.+..||++|+|||+.. ....+....++.+.. .+.|+|||+||+|++.. ..+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------~el------- 293 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------EEA------- 293 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------HHH-------
Confidence 22334467888999999999872 122222333344443 35899999999998520 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
...+..+... ++...++|+|||+++.||.+|+..|..+++.
T Consensus 294 ------------~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 294 ------------EERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ------------HHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 0111111111 0112378999999999999999999877653
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=158.96 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|||..++||||||.+|.+..+.....+++...+. ..+.++. ....|.||||+|+..|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~--------------~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDK--------------RRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECC--------------EEEEEEEEeCCCcHHHHHHhH
Confidence 4899999999999999999987765544444322221 1111111 112489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHH-HHHH-HHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~-ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++..+|++|||+|+++.-..+.. ..|. .+. ..++|+|||+||+|+... ......+..+. +. ...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~------~~~~~~~~~~~---~~--pIs 136 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD------LATLRELSKQR---LI--PVT 136 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc------hhhhhhhhhcc---CC--ccC
Confidence 999999999999999885333332 2222 222 246899999999998521 00001110000 00 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCC-hhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeG-I~eLl~~L~~l 1002 (1324)
........... +.+++|.|||++|.| |.++|......
T Consensus 137 ~e~g~~~ak~~--------------~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 137 HEQGTVLAKQV--------------GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHHHHHHc--------------CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 00111111111 235899999999995 99999887653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=170.80 Aligned_cols=152 Identities=22% Similarity=0.291 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc------
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~------ 869 (1324)
-|+|||.+|+||||||++|++........+++|..+....+.+.. ...|+|+||||...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~---------------~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD---------------GRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC---------------CceEEEEECCCCcccccccc
Confidence 399999999999999999998664434444555544333222210 23599999999632
Q ss_pred -hhhhhhhccCcccceEEeeccccC--CcH-HHHH-HHHHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHHH
Q 000735 870 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIE-SLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G--v~~-QT~E-~l~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~ 939 (1324)
+.....+++..|+++|+|||+++. ..+ .... ++..|.. .++|+|||+||||+.. .. .
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~--e---- 291 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE--E---- 291 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH--H----
Confidence 223344566779999999999752 122 2222 2233433 4689999999999741 00 0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 940 q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.+.. +... ++ +++|+|||++|.||.+|+.+|..++.
T Consensus 292 -----------~l~~----l~~~------------l~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 292 -----------NLEE----FKEK------------LG--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred -----------HHHH----HHHH------------hC--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0111 1110 01 47999999999999999999987654
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=157.89 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
.|+|+|..|+|||||+.+|....+. ......+..+.....+.+.. ....|+||||||+..| ++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchH--HH
Confidence 5999999999999999999866553 21111111111111111111 1135899999999844 23
Q ss_pred hhccC-cccceEEeeccccCCcHHHH-HHHHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 875 SRGSG-LCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 875 ~rg~~-~aDiaILVVDa~~Gv~~QT~-E~l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
...+. .+|++|||+|+++.-..... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------~~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS------REVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc------ceec--------------
Confidence 34455 89999999999875332222 22333333 46899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..... .+... ..+++++|||++|.||.+|+.+|+..+.
T Consensus 126 ---~~~~~-~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 126 ---VQEGR-ACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ---HHHHH-HHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00000 11110 1247899999999999999999986553
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=144.82 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.++|||||+.+|.+..+.......+..+.....+..+. ....|.||||||+..|..++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDG--------------KPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETT--------------EEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccc--------------ccccccccccccccccccccc
Confidence 389999999999999999998776654433332232222222211 012499999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HH---HHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~l---l~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|||+|.++.-....+..| .. ....++|+||+.||.|+...+ ..+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~------------------- 123 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVS------------------- 123 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSC-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc----cch-------------------
Confidence 999999999999999874322222222 12 222358999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+......+ + ++++.|||++|.||.++|..|+..+
T Consensus 124 ~~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 VEEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 01122222222 1 6999999999999999999887654
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=171.48 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
+.|+|+|++|+|||||+++|++... .....+|+|.++....+.+. ...++||||||+..+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~----------------g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN----------------GILIKLLDTAGIREHADF 267 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC----------------CEEEEEeeCCCcccchhH
Confidence 4699999999999999999998653 23445677766544333322 234899999998665432
Q ss_pred --------hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHH
Q 000735 874 --------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 874 --------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~ 945 (1324)
...++..+|++|||||++++...... ++..+...++|+|||+||+|+.. .+.
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~-------~~~------------ 327 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI-------NSL------------ 327 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC-------cch------------
Confidence 23567889999999999988776665 56666667899999999999852 000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 946 ~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+... ..+++|+|||++ .||.+++..|...+.
T Consensus 328 -----------~~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -----------EFFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -----------hhhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 001000 014688999998 599999988876553
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=152.23 Aligned_cols=161 Identities=21% Similarity=0.143 Sum_probs=110.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+...|+++|..++|||+||.+|....+.......|..++-...+..+. ....+.||||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g--------------~~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG--------------KKIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC--------------eEEEEEEEEcccchhHHH
Confidence 445699999999999999999998777655444443333322222221 113589999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+...+++.++++|||+|+++......+..| ......++|+|+|.||+|+... +. +..+
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e- 138 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKE- 138 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHH-
Confidence 999999999999999999874333222222 2222347999999999998520 00 1111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
.-.....++| ++|+.|||++|.||.+.|..|...+..
T Consensus 139 -----~ge~lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 139 -----RGEALAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred -----HHHHHHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 1111223333 689999999999999999888766544
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=141.84 Aligned_cols=151 Identities=25% Similarity=0.225 Sum_probs=100.1
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhhcc
Q 000735 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1324)
Q Consensus 799 IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~ 878 (1324)
|+|++++|||||+++|.+..............+....+... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 68999999999999999776521111111122221111110 0123599999999999988888888
Q ss_pred CcccceEEeeccccCCcHHHHHHH-----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHH
Q 000735 879 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1324)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~ 953 (1324)
..+|++|+|+|++++........+ ......++|+||++||+|+... .. ....
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------~~-~~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------RV-VSEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------cc-hHHH----------------
Confidence 999999999999987665555543 3334567999999999998621 00 0000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
.....+.. ...++++++|+.+|.|+.+++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00011111 1246899999999999999998875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=152.84 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|+|+|+.|+|||||+.+++...+......++...+....+.... ....|.+|||||+..|..+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~i~i~~~Dt~g~~~~~~~ 74 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC--------------GPICFNVWDTAGQEKFGGL 74 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCchhhhhh
Confidence 35699999999999999998876655433333333222222221110 1124899999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHHH-HHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
+..++..+|++|+|+|++.....+++..|. .+. ..++|+++++||+|+... ...
T Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------~~~---------------- 131 (215)
T PTZ00132 75 RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-------QVK---------------- 131 (215)
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-------cCC----------------
Confidence 988889999999999998866555554432 221 246899999999997420 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
......+... .+.++++||++|.||..++.+|...+
T Consensus 132 --~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 132 --ARQITFHRKK---------------NLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred --HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 24789999999999999888886543
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=150.47 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|+.|+|||||+++|....+.......+...+.. .+.+.. ....++||||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDG--------------KPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECC--------------EEEEEEEEECCCChhccccch
Confidence 48999999999999999998665543222222111110 000000 012488999999999988777
Q ss_pred hccCcccceEEeeccccCCcHHHHH--HHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++.+|++|+|+|+++.-..+.+. ++..++. .++|+|||+||+|+...-.. ... ... ..+. .
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~---~~~--~~~-------~~~~-~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVA---KEE--YRT-------QRFV-P 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccc---ccc--ccc-------CCcC-C
Confidence 7788999999999997643333322 2333332 36999999999998531000 000 000 0000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
........... +.+++|+|||++|.||+++|.+|...
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 00111111111 23579999999999999999998753
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=144.87 Aligned_cols=136 Identities=26% Similarity=0.321 Sum_probs=97.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC----Ccchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG----He~F~ 871 (1324)
.|.|||.+++|||||+.+|.+....- .-||.+..+ =.+||||| |..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i~~~------------------------~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAIEYY------------------------DNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc----CccceeEec------------------------ccEEECChhheeCHHHH
Confidence 38999999999999999998765431 124443211 24799999 55566
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
......+..||+++||+|++.... ...-..+...+.|+|=||||+|+..+ . ..
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~-----~-------------------~~ 107 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD-----D-------------------AN 107 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc-----h-------------------hh
Confidence 656666778999999999987432 11223456678999999999998621 1 22
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
+......|...|+. .+|+||+++|+||.+|.++|-
T Consensus 108 i~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 108 IERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHHh
Confidence 44555677777753 569999999999999998873
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=153.71 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=114.9
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCccc---------------------------------------ccccCceeee
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---------------------------------------EGEAGGITQQ 830 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~---------------------------------------~ge~gGITq~ 830 (1324)
...|+++|+|+|..|+||||++.+|...-.+ -|..|||+..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3456778999999999999999999643222 1223333332
Q ss_pred eeeeEeccccccchhhhccccccccCCCEEEEeCCCCc-chhhh-------hhhccCcccceEEeeccccCCcHHHHHH-
Q 000735 831 IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFTNL-------RSRGSGLCDIAILVVDIMHGLEPQTIES- 901 (1324)
Q Consensus 831 iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe-~F~~~-------r~rg~~~aDiaILVVDa~~Gv~~QT~E~- 901 (1324)
+..+...++........ .-....+.||||||+- .|+-. -....+..-++++|||......|.|.-+
T Consensus 95 LNLF~tk~dqv~~~iek-----~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSN 169 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEK-----RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSN 169 (366)
T ss_pred HHHHHHHHHHHHHHHHH-----hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHH
Confidence 22221111110000000 0011358999999963 34211 1123344668899999877666666543
Q ss_pred ----HHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCCC
Q 000735 902 ----LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDRG 976 (1324)
Q Consensus 902 ----l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~-~l~~I~~~L~e~Gl~~e~~~~~~~~g 976 (1324)
..+|...++|+|||+||+|+. ...|...+..-.+..+..++. .-..+...+....|..+.||
T Consensus 170 MlYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY------ 236 (366)
T KOG1532|consen 170 MLYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY------ 236 (366)
T ss_pred HHHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH------
Confidence 356667889999999999986 355655554433333333321 11112222222333334444
Q ss_pred CceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 977 ~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+.+|.||++||.|++++|..+...+..
T Consensus 237 ~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 237 RSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred hhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 34789999999999999999888665543
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=174.85 Aligned_cols=146 Identities=25% Similarity=0.286 Sum_probs=104.2
Q ss_pred cCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh------h
Q 000735 801 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 874 (1324)
Q Consensus 801 GhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~------r 874 (1324)
|.+|+|||||+++|++.++..+..+|+|.+.....+.+. ...++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ----------------GEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC----------------CeEEEEEECCCccccCccchHHHHH
Confidence 889999999999999888777788888887765544432 234899999999988653 2
Q ss_pred hhc--cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 875 SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 875 ~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
..+ ...+|++|+|+|+++. ......+.++...++|+|||+||+|+... ..+. ..
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~---------------~d- 120 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGIR---------------ID- 120 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCCh---------------hh-
Confidence 222 2468999999999872 23445555666789999999999998521 0000 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+.+. + .+++++|||++|.||++|++.|....
T Consensus 121 ---~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 ---EEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---HHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111111 1 25899999999999999999997653
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=143.02 Aligned_cols=148 Identities=17% Similarity=0.113 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeE--eccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY--FPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~--~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.|+|+|+.++|||||+.+++...+.....+ + .+.+. +.+.. ....+.||||+|+..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~---~~~~~~~i~~~~--------------~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-E---GGRFKKEVLVDG--------------QSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-C---ccceEEEEEECC--------------EEEEEEEEECCCCCch---
Confidence 489999999999999999987655432111 1 11111 11110 0124899999999753
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHH-HHHHHh----cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+.++.+|++|||+|+++.-..+.... +..+.. .++|+|||.||+|+... +...+ ..
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~-- 121 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DD-- 121 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CH--
Confidence 34567999999999998665555433 233322 35899999999997310 00000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.....|... ...++|++|||++|.||.++|..++.
T Consensus 122 -----~~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 122 -----ARARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred -----HHHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 000112111 02368999999999999999998864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=139.66 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=112.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
-...|.|+|..|+|||+||-+|....+.......|..++-..+..++..+ ..+.||||+|++.|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhhc
Confidence 34569999999999999999999888877666556555555554444322 3599999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHHH-HHH----hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll~----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
++..+++.+-++|||+|++..-+...+.+|. .+. ..++-.++|.||||.... +-.+
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~----R~V~--------------- 136 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE----RVVD--------------- 136 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc----cccc---------------
Confidence 9999999999999999998754444444442 222 235667899999997421 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
+ ++-+.....+ .+-|+.+||+|.+||...|..|+..
T Consensus 137 ---r-eEG~kfAr~h---------------~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 137 ---R-EEGLKFARKH---------------RCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred ---H-HHHHHHHHhh---------------CcEEEEcchhhhccHHHHHHHHHHH
Confidence 0 1111222222 3689999999999999999887654
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=165.74 Aligned_cols=153 Identities=25% Similarity=0.334 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh-
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~- 873 (1324)
..|+++|++|+|||||+|+|++.+...|+.+|+|...-...+.+. .+.|+|||+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~----------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK----------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec----------------CceEEEEeCCCcCCCCCCC
Confidence 349999999999999999999999999999999988765555433 345999999998777542
Q ss_pred -----hhhc-c-CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 874 -----RSRG-S-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 874 -----r~rg-~-~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
..++ + ..+|++|.|||+++ ++ .....-.+|...++|+|+++|.+|.... ..+
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-Le-RnLyltlQLlE~g~p~ilaLNm~D~A~~------~Gi------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-LE-RNLYLTLQLLELGIPMILALNMIDEAKK------RGI------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-HH-HHHHHHHHHHHcCCCeEEEeccHhhHHh------cCC-------------
Confidence 1122 2 34799999999976 22 3333445567789999999999997410 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
...... |.+ .+ .+|+|||||++|.|+++|+..+....+
T Consensus 127 --~ID~~~----L~~------------~L--GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEK----LSK------------LL--GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHH----HHH------------Hh--CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 000011 111 11 279999999999999999999886554
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=143.61 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCHHHHHH-HHHcCccccccc-Cceeeeeee---eEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 796 ICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd-~L~~t~v~~ge~-gGITq~iga---~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
.|+|+|+.++|||||+. ++.+..+..+.. ......++. +.............+. -....|.||||+|++.+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~----~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD----GVSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeC----CEEEEEEEEeCCCChhh
Confidence 59999999999999996 555433322111 011111221 1000000000000000 01135999999998763
Q ss_pred hhhhhhccCcccceEEeeccccCCcHHHHH--HHHHHHh--cCCcEEEEeeccccc
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 922 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~ll~~--~~vP~IVaINKiDl~ 922 (1324)
++..+++.+|++|||+|+++....+... ++..++. .++|+|||+||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556788999999999998754444332 2233332 368999999999985
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=144.91 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=87.9
Q ss_pred cchhhhcCCCcccCCCCccccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhcc
Q 000735 770 KEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849 (1324)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~ 849 (1324)
+..+.|..++.......+.+....+.+|+|+|++|+|||||++.|+...... .++...|.+.+.
T Consensus 15 ~~~~~~~~k~~~~~~~~r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i~------------ 78 (225)
T cd01882 15 QRTADIEEKKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITVV------------ 78 (225)
T ss_pred HHHHHhhhccccceeeccccccCCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEEE------------
Confidence 3334444444433333444444556679999999999999999998542110 011111111100
Q ss_pred ccccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEE-Eeeccccc
Q 000735 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 922 (1324)
Q Consensus 850 ~~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IV-aINKiDl~ 922 (1324)
......|+|+||||+. ......+..+|++|||+|+..|+..++..++..+...++|.+| |+||+|++
T Consensus 79 ---~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 79 ---TGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ---ecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 0122469999999975 3334456889999999999999999999999999988999654 99999986
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=146.27 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch-----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F----- 870 (1324)
.|+|+|++++|||||+++|++.....+...+.|..+....+. +....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~----------------~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLE----------------YKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEE----------------ECCeEEEEEECCCcccccccch
Confidence 489999999999999999998765444444444332222221 12245999999997543
Q ss_pred --hhhhhhccCcccceEEeecccc
Q 000735 871 --TNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 871 --~~~r~rg~~~aDiaILVVDa~~ 892 (1324)
...+...++.+|++|+|+|+++
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 2344567889999999999865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-13 Score=157.05 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh-
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~- 873 (1324)
.|+|+|.||+|||||||.|++.... ...-+|+|.++--.++... +..|.|+||.|...-...
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~----------------G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN----------------GIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC----------------CEEEEEEecCCcccCccHH
Confidence 4999999999999999999987643 2445667777655555433 345999999995433222
Q ss_pred ------hh-hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 874 ------RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 874 ------r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
|. ..+..||+++||+|+++++..+....+. +...+.|+|+|+||+|+...|..
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------------- 342 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------------- 342 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc-------------------
Confidence 22 2456799999999999987777777777 56667999999999999743210
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
. .+ .+....+++.+||+||+||+.|...|..++.
T Consensus 343 ------~----~~--------------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 ------E----SE--------------KLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ------c----hh--------------hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 00 0112348999999999999999999876653
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=132.81 Aligned_cols=154 Identities=22% Similarity=0.248 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.++|+|+.|+|||.||.+|....+.+.....|..++|.-.+.+.. +...+.||||.|++.|.....
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHH
Confidence 489999999999999999998777665544555555544443321 223599999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+-+++||+|++..-....+..| +.|...++-+|+|.||-|+-.. +...|
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vtf------------------ 134 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVTF------------------ 134 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhhH------------------
Confidence 999999999999999875444333333 3444567889999999998421 11111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.+......+ ..+.+..+||+||+||.+.|-....
T Consensus 135 -lEAs~FaqE---------------nel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 135 -LEASRFAQE---------------NELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -HHHHhhhcc---------------cceeeeeecccccccHHHHHHHHHH
Confidence 111111111 2357899999999999998766554
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=132.43 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=115.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.+.|||+..+||||||-+.....++....+.+..+.-+- .+..... -..+.||||.|++.|+.++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK-----Tvyr~~k---------RiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-----TVYRSDK---------RIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe-----Eeeeccc---------EEEEEEEecccchhhhHHHH
Confidence 599999999999999999998877654433333332211 1111110 12499999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+++.||++|+++.-.....+.| ....-.+.|+|+|.||||+-.. +.- .
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----Rvi-------------------s 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----RVI-------------------S 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----eee-------------------e
Confidence 999999999999999875444444433 2223468999999999998521 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhh
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~ 1012 (1324)
.+..+....+.| +.+|.+||+.+.|+.+++..|+..+-..|.+.+.
T Consensus 146 ~e~g~~l~~~LG---------------fefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLG---------------FEFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhC---------------hHHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 122333333444 3689999999999999999999888777776543
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-13 Score=134.12 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=109.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
.+|||.+++|||+|+-+|+...++..+...|..++-.-.++++..+ ..|.||||+|++.|+.+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~--------------VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR--------------VKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 6899999999999999999887776554333333332233322211 24999999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHHHHH-HHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~ 953 (1324)
+++.++++|+|+|.++|-......-| ..++. -.+|-|+|.||.|.+. +..-. -.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----RrvV~------------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRVVD------------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----ceeee------------------hH
Confidence 99999999999999998765555444 33332 2478999999999852 11100 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
........+ .+.+|.+||+...|+..+|..|..+.
T Consensus 134 dAr~~A~~m---------------gie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 134 DARAFALQM---------------GIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHHHHHhc---------------CchheehhhhhcccchHHHHHHHHHH
Confidence 122222222 36899999999999999998887654
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-13 Score=140.71 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+++|.+++|||-||.++....+......+|...++...+.++. +.....||||.|++.|....+
T Consensus 16 KiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitS 81 (222)
T KOG0087|consen 16 KIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITS 81 (222)
T ss_pred EEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccc
Confidence 489999999999999999998887766656665555443333221 112478999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.+-+||||+|++...+.+..+ +|..|+. .+++|++|.||+||.. ....+
T Consensus 82 aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~---------------------- 138 (222)
T KOG0087|consen 82 AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVP---------------------- 138 (222)
T ss_pred hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccc----------------------
Confidence 9999999999999998755444333 3345554 4799999999999852 11100
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m 1007 (1324)
.+........+| .+|+.|||+.+.|+...|..++..+...+
T Consensus 139 te~~k~~Ae~~~---------------l~f~EtSAl~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 139 TEDGKAFAEKEG---------------LFFLETSALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred hhhhHhHHHhcC---------------ceEEEecccccccHHHHHHHHHHHHHHHH
Confidence 011111122222 48999999999999999987766554433
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=130.82 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+++|+.|+|||.|+.+|+++-+..|....|..++-.-.+.++.. ...+.||||.|++.|.+.+.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge--------------kiklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE--------------KIKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe--------------EEEEEEeeccchHHHHHHHH
Confidence 4899999999999999999998887665444333322112221111 12489999999999999999
Q ss_pred hccCcccceEEeeccccCCc----HHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~----~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.+++.++.+|||+|++.... |..+.-|......++--|+|.||+|+.. -++ +
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d---------rre-v-------------- 130 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD---------RRE-V-------------- 130 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh---------hhh-h--------------
Confidence 99999999999999986433 4444444444556677899999999841 111 1
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+-..|... .+.-|+.+||+..+|++.||..|...
T Consensus 131 p~qigeefs~~--------------qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 131 PQQIGEEFSEA--------------QDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred hHHHHHHHHHh--------------hhhhhhhhcccchhhHHHHHHHHHHH
Confidence 11222233322 11346789999999999998877543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=137.21 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=102.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh--
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~-- 872 (1324)
+.|+|+|++|+|||||+++|++...... +.++. +....+.... .+.. -..+.++||||||...+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~~-----~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKRT-----PYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCce-----eeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999997543211 11111 1000000000 0000 0124699999999754311
Q ss_pred ---hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 873 ---LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 873 ---~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
++..++..+|++|||.+ ..+......++..++..+.|+|||+||+|+.. ++.............+...+.
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhccccccccHHHHHHHHH
Confidence 23345677899888854 45666777778888888999999999999841 111000000000001111111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc--cCCChhhHHHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~--tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+...+...|+ ...+||.+|+. .+.|++.|...|...++.
T Consensus 143 ---~~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 143 ---DNCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred ---HHHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 223333433332 23589999999 789999999988876654
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=138.82 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=86.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..|+|+|..|+|||||+.+|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999998887666655554443332221100 1238999999999999999
Q ss_pred hhccCcccceEEeecccc--CCcHHHHHHHHHHHhc---CCcEEEEeecccccc
Q 000735 875 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLY 923 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~ll~~~---~vP~IVaINKiDl~~ 923 (1324)
..+...++++|+|+|... ....-+..++..+... ++|+|++.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999985 3333444444454443 589999999999963
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=128.54 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=76.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc------
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~------ 869 (1324)
|+|+|.+|+|||||+++|++.+. ..+...+.|.++....+.+ ....+.|+||||..+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----------------NNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----------------TTEEEEEEESSSCSSSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----------------ceeeEEEEeCCCCcccchhhH
Confidence 89999999999999999997543 3444456666652222222 223478999999643
Q ss_pred ---hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeec
Q 000735 870 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1324)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINK 918 (1324)
+.....+.+..+|++|+|||+.+....+....++.|+ .+.|+|+|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2223445568899999999988855555667777786 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-12 Score=153.02 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCEEEEeCCCCcc-----hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcC--CcEEEEeeccccccCcccCC
Q 000735 857 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 857 ~~I~IIDTPGHe~-----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~--vP~IVaINKiDl~~~w~~~~ 929 (1324)
.+|.||||||... +..++...+..+|++|||||+..++.+.....+..++..+ .|+|+|+||+|+...+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre---- 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN---- 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc----
Confidence 4699999999432 3445666889999999999999988888888888888877 5999999999985211
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 930 ~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.+....+. ..+...|...++ ....||||||++|.|+..|+..|..
T Consensus 306 -eddkE~Ll--------------e~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 -SDDADQVR--------------ALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred -cchHHHHH--------------HHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 11111111 111112222222 2357999999999999999999875
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=138.27 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+|+|..++|||||+.+|.+..+......+|..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999887765444444322222122111000 000012489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHH-HHHHh----------------------cCCcEEEEeeccccc
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 922 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~----------------------~~vP~IVaINKiDl~ 922 (1324)
.+++.+|++|||+|+++.-..+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999986544444433 22221 368999999999985
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-12 Score=127.50 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=107.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
|...|.|+|..|+|||||+.+|.+.... +|...+|.-. .. ..++.+.++|||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~I---kt-----------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQI---KT-----------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceee---EE-----------EEecceEEEEEEcCCcchhHH
Confidence 4455999999999999999999875422 1222222111 11 124456799999999999999
Q ss_pred hhhhccCcccceEEeeccccCC-cHHHHHHHHHH----HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll----~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.+..++..+|++|+|||..+.. +.++...|..| +..+.|++|+.||.|+.+..+
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999998753 34555555544 336789999999999863211
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.+.|...+.- +.+.. ...+++|-|||.||+++.+-++||+.-+
T Consensus 135 ----~~~i~~~~~L-----~~l~k----s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 135 ----LEEISKALDL-----EELAK----SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ----HHHHHHhhCH-----HHhcc----ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 0111111111 11111 1357999999999999988888876533
|
|
| >PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-13 Score=121.69 Aligned_cols=66 Identities=52% Similarity=0.863 Sum_probs=59.4
Q ss_pred eeceeEEecccccccCCCCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1252 ~~p~~~~i~~~~vf~~~~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+-||.|+|+|.|+||.++ +|+| .|+.|+|++|+|| +|. .+|+|.||++++++|++|++|++|||+|
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G~--~iG~I~sIe~~~k~v~~A~~G~eVai~I 67 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DGR--KIGRIKSIEDNGKNVDEAKKGDEVAISI 67 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CSS--CEEEEEEEEETTEEESEEETT-EEEEEE
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CCE--EEEEEEEeEECCcCccccCCCCEEEEEE
Confidence 358999999999999999 9999 9999999999999 664 4999999999999999999999999987
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-12 Score=134.55 Aligned_cols=155 Identities=23% Similarity=0.203 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+++|--++||||+|.+|....+... .+.| ....-.+ .|++..+++||..|+..+..++.
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-vPTi--GfnVE~v----------------~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-VPTI--GFNVETV----------------EYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-CCcc--ccceeEE----------------EEcceEEEEEecCCCcccccchh
Confidence 499999999999999999986655432 1111 1111111 23445699999999999999999
Q ss_pred hccCcccceEEeeccccCC-cHHHHH-HHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGL-EPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv-~~QT~E-~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~ 950 (1324)
.++..++++|+|||.++.. .+.+.+ ..+++.. .++|++|+.||.|+++..
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------- 134 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------- 134 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------------------------
Confidence 9999999999999998742 122333 2333332 478999999999997531
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
....|.+.|..+.+.. ....+-.++|.+|+|+.+-+++|...+.
T Consensus 135 s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1234445555555432 3457899999999999999999876553
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-12 Score=128.89 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=104.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
+..|+++|..=+|||||+-++....|.......+ + +.|.... +... -.-..+.||||+|++.|..+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl--Q--ASF~~kk--------~n~e--d~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL--Q--ASFQNKK--------VNVE--DCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH--H--HHHhhcc--------cccc--cceeeeeeeeccchHhhhcc
Confidence 4569999999999999999998766543322111 1 1111100 0000 01125999999999999999
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
-.-+++.+|++|||+|+++.-..|-...| ..|+. ..+.++||.||||+... + .
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R-------------------~ 135 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R-------------------Q 135 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h-------------------h
Confidence 99999999999999999998777777665 23332 34789999999998410 0 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
............. ...++.+||+.+.||.+||..|...
T Consensus 136 Vt~qeAe~YAesv---------------GA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 136 VTRQEAEAYAESV---------------GALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hhHHHHHHHHHhh---------------chhheecccccccCHHHHHHHHHHH
Confidence 0001111111111 1467899999999999999988654
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=138.54 Aligned_cols=155 Identities=22% Similarity=0.213 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch--h
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--T 871 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F--~ 871 (1324)
.|.|+|.|++|+|||||+.+|++........+.+|.+|...+|.... ..+++|||||.-+- .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~----------------~R~QvIDTPGlLDRPl~ 231 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY----------------LRIQVIDTPGLLDRPLE 231 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC----------------ceEEEecCCcccCCChH
Confidence 46699999999999999999998876665666666555444444332 34999999996442 1
Q ss_pred --hhh----hhcc-CcccceEEeecccc--CCcHHHHHHH-HHHH-hcCCcEEEEeeccccccCcccCCCchHHHHHHHH
Q 000735 872 --NLR----SRGS-GLCDIAILVVDIMH--GLEPQTIESL-NLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 872 --~~r----~rg~-~~aDiaILVVDa~~--Gv~~QT~E~l-~ll~-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q 940 (1324)
|.. ..++ .+.+++|+++|.+. |.......+| ..++ ..+.|+|+|+||+|..+-|
T Consensus 232 ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e--------------- 296 (346)
T COG1084 232 ERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE--------------- 296 (346)
T ss_pred HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh---------------
Confidence 111 1122 35789999999975 4433222222 2222 2458999999999986321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 941 ~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.+..+...+...|. ...+.+|+..+.+++.+...+....
T Consensus 297 ----------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 297 ----------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred ----------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHh
Confidence 22333333443332 2345678888888887776665543
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=138.77 Aligned_cols=148 Identities=24% Similarity=0.347 Sum_probs=94.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc--ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-----
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~----- 869 (1324)
|++||.+|+||||||++|....-. .+.+.++..+||.+++ +.. ..|++-|.||.-.
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y--ddf---------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY--DDF---------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec--ccc---------------ceeEeccCcccccccccc
Confidence 899999999999999999976543 3444444456663332 210 2399999999322
Q ss_pred --hhhhhhhccCcccceEEeeccccCC---cHHHHHHH-HHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHH
Q 000735 870 --FTNLRSRGSGLCDIAILVVDIMHGL---EPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv---~~QT~E~l-~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~ 938 (1324)
..-...|.+-.|++++||||++.+. -.|++..| ..|.. ...|.+||+||||++.+ ..+
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~------ 330 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----EKN------ 330 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----HHH------
Confidence 1222345566799999999998872 22222222 22222 35799999999998511 000
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 939 ~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 331 ------------~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 331 ------------LLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ------------HHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 111221111 1226999999999999999887743
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=138.54 Aligned_cols=238 Identities=19% Similarity=0.313 Sum_probs=139.3
Q ss_pred cCCCcccCCCCccccCCCCCE-EEEEcCCCCCHHHHHHHHHcC--ccc-ccccCceeeeeeeeEeccccccchhhhcccc
Q 000735 776 SKEPEVDATPKQAEENLRSPI-CCIMGHVDTGKTKLLDCIRGT--NVQ-EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 776 ~~~~~~~~~~~~~~~~~R~pi-V~IlGhvdaGKTTLLd~L~~t--~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~ 851 (1324)
.++....+.-.+.+....+|. |+|||++|+|||||+..|... ... ..-.|.||.-.|
T Consensus 50 ~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg------------------- 110 (1077)
T COG5192 50 EEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG------------------- 110 (1077)
T ss_pred hhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------------------
Confidence 344444555566777666665 569999999999999988632 111 112233332222
Q ss_pred ccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeeccccccCcccCCC
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRN 930 (1324)
Q Consensus 852 ~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl~~~w~~~~~ 930 (1324)
+...|+|+.||. + .+.+...+..+|++||+||++-|+.-.|.++|++|...++|.| -|+|.+|+.. +
T Consensus 111 ---K~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk------~ 178 (1077)
T COG5192 111 ---KTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK------N 178 (1077)
T ss_pred ---ceeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc------C
Confidence 124599999993 3 4445557788999999999999999999999999999999965 4899999863 2
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhH-HHHHHHHHHHhHHh
Q 000735 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL-LLLLVQWTQKTMVE 1009 (1324)
Q Consensus 931 a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eL-l~~L~~l~~~~m~e 1009 (1324)
.+ +|....+.+..+|... + | ....+|.+|.+.+--.++- +..|.+++.-.-..
T Consensus 179 ~s---tLr~~KKrlkhRfWtE-------i---------y-------qGaKlFylsgV~nGRYpDreilnLsRfisVMKfR 232 (1077)
T COG5192 179 PS---TLRSIKKRLKHRFWTE-------I---------Y-------QGAKLFYLSGVENGRYPDREILNLSRFISVMKFR 232 (1077)
T ss_pred hH---HHHHHHHHHhhhHHHH-------H---------c-------CCceEEEecccccCCCCCHHHHHHHHHHhhhccc
Confidence 22 2333233333333321 1 1 1245666676654333321 22222222211000
Q ss_pred hhhcc-----------cccceeE-EEEEEEcCceeEEEEEEEe-eeecCCCEEEEcccCCceeEEeeeccCCCC
Q 000735 1010 KLTFR-----------NELQCTV-LEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTIRALLTPHP 1070 (1324)
Q Consensus 1010 ~l~~~-----------~~~~~~V-lEvk~i~G~Gtvi~~iV~~-G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p 1070 (1324)
.|.+. ..+..++ ++-...-|+-.+++|.|.. |..+....|.|.|.+...+..|-.|.+|+|
T Consensus 233 Pl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcP 306 (1077)
T COG5192 233 PLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCP 306 (1077)
T ss_pred ccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCC
Confidence 11110 0111111 1111112455566777654 344555568888887777888899999987
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=141.92 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
....|+|||+.++||||||.+|.+..+......+|..++....+.+.........+... .-....|.||||+|++.|..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhhhh
Confidence 34569999999999999999999877654443444333222222221100000000000 00112489999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHH-HHHHHhc---------------CCcEEEEeeccccc
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---------------NTEFIVALNKVDRL 922 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll~~~---------------~vP~IVaINKiDl~ 922 (1324)
++..+++.+|++|||+|+++--....+.. +..+... ++|+|||.||+|+.
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 99999999999999999987333322222 2233321 48999999999985
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=137.07 Aligned_cols=128 Identities=23% Similarity=0.336 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCcchhhhhh------hccCc--ccceEEeeccccCCcHHHHHHHHHHH-----hcCCcEEEEeecccccc
Q 000735 857 PGLLVIDTPGHESFTNLRS------RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 923 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~------rg~~~--aDiaILVVDa~~Gv~~QT~E~l~ll~-----~~~vP~IVaINKiDl~~ 923 (1324)
..+.||||||+..+...+. +.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432211 12222 89999999999988888877665543 56899999999999863
Q ss_pred CcccCCCchHHHHHHHHhH---HHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChh
Q 000735 924 GWKTCRNAPIVKAIKQQNT---DVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1324)
Q Consensus 924 ~w~~~~~a~~~~~L~~q~~---~v~~ef~~-------~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~ 993 (1324)
.... ..+..... .+...+.. ....+...+.. ++...++|++|+.++.|+.
T Consensus 177 ------~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 ------EEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred ------chhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1111 11111111 11111110 01111111222 2234589999999999999
Q ss_pred hHHHHHHHHHH
Q 000735 994 DLLLLLVQWTQ 1004 (1324)
Q Consensus 994 eLl~~L~~l~~ 1004 (1324)
+|+.+|..++.
T Consensus 237 ~L~~~I~~~l~ 247 (253)
T PRK13768 237 ELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHcC
Confidence 99999977653
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=141.76 Aligned_cols=152 Identities=25% Similarity=0.314 Sum_probs=97.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhcccccccc-CCCEEEEeCCCCc----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHE---- 868 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~-~~~I~IIDTPGHe---- 868 (1324)
-|.|+++|.+|+|||||+|+|++..+.... ++.+|-.|+.. ...+. +..++|-||=|+-
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d------~LFATLdpttR----------~~~l~~g~~vlLtDTVGFI~~LP 255 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVAD------QLFATLDPTTR----------RIELGDGRKVLLTDTVGFIRDLP 255 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccc------cccccccCcee----------EEEeCCCceEEEecCccCcccCC
Confidence 466999999999999999999976554322 22222222211 01111 3569999999953
Q ss_pred -----chhhhhhhccCcccceEEeeccccCCc-HHHHHHHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHH
Q 000735 869 -----SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 869 -----~F~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~ 939 (1324)
+|.+... -...+|++|+|||+++... .|-..+...|.. ..+|+|+|+||||++.+ ..
T Consensus 256 ~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------- 321 (411)
T COG2262 256 HPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------- 321 (411)
T ss_pred hHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh-------
Confidence 3433333 4567999999999998632 222233344444 45899999999998731 00
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 940 q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
+...+.. ..-..|++||++|+||+.|+..|...++.
T Consensus 322 ---------------~~~~~~~---------------~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ---------------ILAELER---------------GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ---------------hhhhhhh---------------cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0001100 01158999999999999999998876653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=128.52 Aligned_cols=111 Identities=22% Similarity=0.178 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh-
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~- 872 (1324)
.|+|||++|+|||||+|.|++..+.... ..+.|.++..+...+ ....|+||||||..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4999999999999999999987653222 345665554433322 234699999999766521
Q ss_pred ------hh----hhccCcccceEEeeccccCCcHHHHHHHHHHHhc-C----CcEEEEeecccccc
Q 000735 873 ------LR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 923 (1324)
Q Consensus 873 ------~r----~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~-~----vP~IVaINKiDl~~ 923 (1324)
.. ......+|++|||+++.+ +.......+..++.. + .++||++|++|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 11 123456899999999988 887777778777653 2 58999999999863
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=135.44 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=76.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc----------CceeeeeeeeEeccccccchhhhccccccccCCCEEEEeC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~----------gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDT 864 (1324)
..|+|+|+.|+|||||+++|.+..+..... .+++.......+..+.. ...|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~--------------~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV--------------KLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE--------------EEEEEEEec
Confidence 469999999999999999999876543211 11111111111111110 024999999
Q ss_pred CCCcchhhh--------------------------hhhccC--cccceEEeeccc-cCCcHHHHHHHHHHHhcCCcEEEE
Q 000735 865 PGHESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1324)
Q Consensus 865 PGHe~F~~~--------------------------r~rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~ll~~~~vP~IVa 915 (1324)
||+.++.+. |...+. .+|++|++++.. +++.+..++.++.+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997665331 101222 478899999876 5888888999999885 7999999
Q ss_pred eeccccc
Q 000735 916 LNKVDRL 922 (1324)
Q Consensus 916 INKiDl~ 922 (1324)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999986
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-11 Score=131.55 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=114.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc--
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~-- 869 (1324)
..+.+|.|||.+|+|||||+|+|.++++..- .++|+..-+.... ...+....++||||||..+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v------~~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg~ 101 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEV------SKVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDGK 101 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCcee------eecccCCCchhhH---------HhhccccceEEecCCCcccch
Confidence 4455677999999999999999997665421 1122211111100 0122335699999999776
Q ss_pred -----hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHh--cCCcEEEEeeccccc---cCcccCCCchHHHHHHH
Q 000735 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDRL---YGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~--~~vP~IVaINKiDl~---~~w~~~~~a~~~~~L~~ 939 (1324)
+..+....+...|++++++++.+..-.....+|+.+.. .+.|+|++||-+|+. ++|....+.+..
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~----- 176 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP----- 176 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH-----
Confidence 67777778889999999999988766666666665544 347999999999974 567654332211
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 940 q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.+...+..+...+...+.. .-|+|.+|+.+++||..|+..|+..++
T Consensus 177 ---a~~qfi~~k~~~~~~~~q~----------------V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ---AIKQFIEEKAEALGRLFQE----------------VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ---HHHHHHHHHHHHHHHHHhh----------------cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1111112222223222221 348999999999999999999887664
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=132.69 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=108.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+...|+|+|..|+|||+|+-++++..+.....+.|- +...-.+.++ -....+.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~--------------~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD--------------GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC--------------CEEEEEEEEcCCCcccChH
Confidence 445699999999999999999998877665545443 1111111111 0113488999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHHHH-HH-H---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll-~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
|+..++..+|+.|||+++++--..+....|. ++ + ...+|+|+|+||+|+... +...
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~--------------- 127 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVS--------------- 127 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccC---------------
Confidence 9999999999999999999855444433332 22 1 234899999999998621 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..... .| ... -.++++.+||....+|.++|..|+..+..
T Consensus 128 ----~eeg~-~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 128 ----EEEGK-AL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ----HHHHH-HH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 00111 11 111 13679999999999999999999876654
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=119.36 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=104.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
-.|+|..|+|||.||..|+...+.......|...+|.-.+.+.... ..+.||||.|++.|...+..
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 5789999999999999999877776665566656655444332211 24899999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHHHHH----HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l----~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l 952 (1324)
+++.+-++++|+|++...+..-+-+| +.|-..++.+|++.||.|+... +. ...
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q----rd-------------------v~y 136 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ----RD-------------------VTY 136 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc----cc-------------------CcH
Confidence 99999999999999874333323222 1222345668899999998521 11 112
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
........+.| ..|+.+||+||.|+.+.|...
T Consensus 137 eeak~faeeng---------------l~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 137 EEAKEFAEENG---------------LMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred HHHHHHHhhcC---------------eEEEEecccccCcHHHHHHHH
Confidence 22333333444 478999999999998876443
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=121.72 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc----ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~----~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
.|+|+|+.++||||||++|.+..+. .....+.+..+....+... ...+.|||++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD----------------RQSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE----------------EEEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC----------------ceEEEEEecCccceec
Confidence 3899999999999999999977655 1111222222221221111 1238999999999888
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHH-------HHHH--hcCCcEEEEeeccc
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-------NLLK--MRNTEFIVALNKVD 920 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-------~ll~--~~~vP~IVaINKiD 920 (1324)
..+...+..+|++|||+|+++. .++..+ ..+. ..++|+|||.||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSDP---ESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCGH---HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCCh---HHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7766668899999999999873 333332 2222 24599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=123.27 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=105.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
++++|..++|||||++.+..+.+... +..+.|+....+.. ..-.|.+||.||+..|..++.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHHH
Confidence 79999999999999998865433221 22233433322211 1124889999999999999999
Q ss_pred ccCcccceEEeeccccC-CcHHHHHHH-HHHH---hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHG-LEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~G-v~~QT~E~l-~ll~---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
+.+.|+.+|+|||+.+. --+..+.-| .+|. -.++|++|..||+|+.+.. ..
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~------------ 140 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SK------------ 140 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cH------------
Confidence 99999999999999873 112233333 3332 2479999999999997431 10
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...|+..- -.+.+.++.|||+...||+-+++||+.+.
T Consensus 141 ----~~li~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 ----IALIERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ----HHHHHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 112223344221 13568999999999999999999998754
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-11 Score=127.00 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=105.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccc-cc--cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQE-GE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~-ge--~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
|.|+|.-++||||||.++-..-.-. +. ..-||...|...-. ..+.+..|.|||..|+....++
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--------------i~v~~~~l~fwdlgGQe~lrSl 85 (197)
T KOG0076|consen 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--------------IEVCNAPLSFWDLGGQESLRSL 85 (197)
T ss_pred heeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--------------eeeccceeEEEEcCChHHHHHH
Confidence 8999999999999999986432111 11 11233332221110 1122345999999999999999
Q ss_pred hhhccCcccceEEeeccccC--Cc---HHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 874 RSRGSGLCDIAILVVDIMHG--LE---PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~G--v~---~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+..++..|+++|+|||+.+. +. .+-...+..=...++|+++.+||.|+.. +- . +
T Consensus 86 w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~-----~------~--- 144 (197)
T KOG0076|consen 86 WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AM-----E------A--- 144 (197)
T ss_pred HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hh-----h------H---
Confidence 99999999999999999873 21 1222233344456899999999999852 10 0 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+..+.... + + ...++++|.||||++|+||.+-+.|++..+.
T Consensus 145 -~El~~~~~~~-e--~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 145 -AELDGVFGLA-E--L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred -HHHHHHhhhh-h--h---------cCCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 1112222211 1 1 1246789999999999999999999886554
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-11 Score=132.71 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC-cchhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNL 873 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH-e~F~~~ 873 (1324)
..|+++|.+++||||||++|+++....+....+|..+-... ..|++-.|+|+|+||. +.++.-
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----------------l~Y~ga~IQild~Pgii~gas~g 127 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----------------LEYKGAQIQLLDLPGIIEGASSG 127 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----------------EeecCceEEEEcCcccccCcccC
Confidence 45999999999999999999988655544444443332222 3455567999999994 333322
Q ss_pred ------hhhccCcccceEEeeccccCC
Q 000735 874 ------RSRGSGLCDIAILVVDIMHGL 894 (1324)
Q Consensus 874 ------r~rg~~~aDiaILVVDa~~Gv 894 (1324)
....++.||.+|||+|+....
T Consensus 128 ~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 128 RGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred CCCcceeeeeeccCCEEEEEEecCCCh
Confidence 334577899999999997543
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=132.76 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=101.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-----
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~----- 869 (1324)
|++||.+++||||||.++.... +.++.+.+++..+|...+.. ...++|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-----------------~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-----------------GESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-----------------CCcEEEecCcccccccccC
Confidence 8999999999999999999765 45555555556666665421 13599999999311
Q ss_pred --hhhhhhhccCcccceEEeeccccCC--c-HHHHHHH-HHHHh-----cCCcEEEEeeccccccCcccCCCchHHHHHH
Q 000735 870 --FTNLRSRGSGLCDIAILVVDIMHGL--E-PQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv--~-~QT~E~l-~ll~~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~ 938 (1324)
......|.+..|-++|+|||++.-- . .+....| ..|.. .+.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 1223445666799999999997422 1 2333332 33333 36799999999996521
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhH
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 939 ~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m 1007 (1324)
...+..+...|.... ..+.+++|||+|++|+..|+..|..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 011222222332221 1123333999999999999999988877653
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-11 Score=127.65 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+.+.|.|+|+.|+|||+|+.+|.+....... ..+...+ ++.+. .-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~-~~~~~---------------~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENNI-AYNVN---------------NSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEE-ECCGS---------------STCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCCc-eEEee---------------cCCCCEEEEEECCCcHHHHH
Confidence 4578999999999999999999976432111 1111111 11110 01234699999999999876
Q ss_pred hhhh---ccCcccceEEeeccccCCcHH---HHHHHH-HH---H--hcCCcEEEEeeccccc
Q 000735 873 LRSR---GSGLCDIAILVVDIMHGLEPQ---TIESLN-LL---K--MRNTEFIVALNKVDRL 922 (1324)
Q Consensus 873 ~r~r---g~~~aDiaILVVDa~~Gv~~Q---T~E~l~-ll---~--~~~vP~IVaINKiDl~ 922 (1324)
.... ++..+-++|+|||+.. +..+ +-++|. +| . ..++|++||+||.|+.
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 5444 4778999999999874 2222 222221 11 1 2468999999999986
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=119.70 Aligned_cols=160 Identities=21% Similarity=0.237 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.+.|+|..-+|||+||..++.+.+..-..+. +|..+|. |.+.+..... ..|.+|||+|++.|.+.+.
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdpt----vgvdffa------rlie~~pg~r---iklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPT----VGVDFFA------RLIELRPGYR---IKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCc----cchHHHH------HHHhcCCCcE---EEEEEeeccchHHHHHHHH
Confidence 4788999999999999999987766443332 2333332 1111111111 2489999999999999999
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHH-H----H-hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-L----K-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~l-l----~-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
.+++.+=+++||+|+++.-...-.+.|.. + . -.++-|.+|..|+|+... +.
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----Rq------------------- 133 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQ------------------- 133 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----cc-------------------
Confidence 99999999999999987543333333321 1 1 123558889999998521 10
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHh
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
....+.-...+.+| ..||.|||++|.||++-+.+|.+.+...
T Consensus 134 Vt~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 134 VTAEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred ccHHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 01112222233344 4799999999999999999987655443
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-11 Score=133.79 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=64.9
Q ss_pred CEEEEeCCCCcchhhhhhhcc--------CcccceEEeeccccCCcHHHHHHH-----HHHHhcCCcEEEEeeccccccC
Q 000735 858 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 924 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~--------~~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVaINKiDl~~~ 924 (1324)
.+.||||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ......++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999988766655433 334578899999876555555333 2233468999999999999732
Q ss_pred cccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 925 w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+ ..+.-........+...+......+...+... -.+++...+++|+|+.+++|+..|+..|-..+
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 11110000001111111100011111111111 01233344899999999999999998886544
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=125.11 Aligned_cols=109 Identities=21% Similarity=0.133 Sum_probs=76.3
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHH-HHHHH-Hh--cCCcEEEEeeccccccCcccCCCchH
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll-~~--~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1324)
.|.||||||++.|..++..+++.+|++|||+|+++....+... ++..+ .. .++|+|||+||+|+... +...
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~- 104 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVT- 104 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCC-
Confidence 4899999999999999999999999999999998854333332 22222 22 35899999999998521 0000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 934 ~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..........+ .+.+++|||++|.||.++|.+|+..++
T Consensus 105 ------------------~~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 105 ------------------YEEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred ------------------HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 146899999999999999999987654
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=133.35 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=61.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccccchhhhc-cc--cc---cccCCCEEEEeCCCC-
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL-KA--NA---TLKVPGLLVIDTPGH- 867 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~e~i~~r~~~v-~~--~~---~~~~~~I~IIDTPGH- 867 (1324)
|+|+|.+++|||||+++|++..+....+++.| ..+|..+++......+...+ .. .. .+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998876555555554 55666665321111110000 00 00 112235999999996
Q ss_pred ---cchhhhh---hhccCcccceEEeeccc
Q 000735 868 ---ESFTNLR---SRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 868 ---e~F~~~r---~rg~~~aDiaILVVDa~ 891 (1324)
..+..+. ...++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4454443 34588999999999996
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=135.41 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc---
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~--- 869 (1324)
.+.|+|+|.+|+|||||||.|.+..+. .+..+|+|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 467999999999999999999987643 45667777775544444 3345699999999654
Q ss_pred -----hhhhhh-hccCcccceEEeeccccCCcHHHHHHHHHHHhc------------CCcEEEEeeccccccCcccCCCc
Q 000735 870 -----FTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 870 -----F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~------------~vP~IVaINKiDl~~~w~~~~~a 931 (1324)
..-+|. ..+..+|+++||||++.+...+.....+.|... .-|+|+++||+|+...+...+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 122222 356779999999999887776666655555432 25899999999986422111111
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeE-EeCCCccCCChhhHHHHHHHHH
Q 000735 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI-VPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 932 ~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~v-VpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
++ ..+. ...+..+++ +.+||+|++|+..|+..|...+
T Consensus 412 ~~-----------------------~~~~------------~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV-----------------------VYPS------------AEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce-----------------------eccc------------cccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00 0000 011233444 4599999999999999886544
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=121.03 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=99.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
+.|.++|..|+|||+|+-.|++..+... ...|....+.+.+ ....++|||.|||.....-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r~------------------gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYRL------------------GSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEee------------------cCcceEEEeCCCcHHHHHHH
Confidence 3499999999999999999997644311 1112222222222 22348999999999876544
Q ss_pred hhccC---cccceEEeeccccCCc--HHHHHHH-HH---H--HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHH
Q 000735 875 SRGSG---LCDIAILVVDIMHGLE--PQTIESL-NL---L--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 875 ~rg~~---~aDiaILVVDa~~Gv~--~QT~E~l-~l---l--~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
.-++. .+-.+|+|||+..-.. ..+-++| .. . ...++|++||+||.|+.. +-..+.+++|++.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t-------Akt~~~Ir~~LEk 172 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT-------AKTAEKIRQQLEK 172 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh-------cCcHHHHHHHHHH
Confidence 44444 7889999999864211 1122222 11 1 234689999999999863 2233344444332
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhh------h-ccc-----CCC-CceeEEeCCCccCCChhhHHHHHHH
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELY------Y-KNK-----DRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 944 v~~ef~~~l~~I~~~L~e~Gl~~e~~------~-~~~-----~~g-~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
-...+. .-+..+.. +..+-+ + ... .+. ..+.|.++|+++| +|.++..||..
T Consensus 173 Ei~~lr----~sRsa~~~--~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 173 EIHKLR----ESRSALRS--ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred HHHHHH----HHHhhhhc--cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 111111 11111111 111111 1 011 122 5688999999999 89888888754
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-11 Score=119.49 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=104.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
...+|..|+||||||-+.+...+...- | ..+|..+-+...+.. ...-.....-.-.++.||||+|++.|.+++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qF---I-sTVGIDFreKrvvY~-s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQF---I-STVGIDFREKRVVYN-SSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCccccee---E-EEeecccccceEEEe-ccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 567899999999999888765543211 1 111211111100000 00000000000124899999999999999999
Q ss_pred ccCcccceEEeeccccCCc-HHHHHHHHHHHhc----CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.++.+-+.||++|.+..-. -.++.+|.+|+.. +--||++.||+|+.. .+.. .
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---------~R~V--------------s 143 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---------QRVV--------------S 143 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---------hhhh--------------h
Confidence 9999999999999986322 2344555565543 345889999999862 0100 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHh
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e 1009 (1324)
-.+.......+| +|+|.+||-||.||....+.|+.++-..|..
T Consensus 144 ~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 122333333444 5999999999999998888887776555543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=130.89 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=67.1
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
....++||||+|...-... .+..+|++|||++...|-.-|.... -...+..|||+||+|++.. ....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~------~~a~ 213 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNK------TAAR 213 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccch------hHHH
Confidence 3467999999996521111 3567999999987555544443321 1122335899999998631 0000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.....+...|.... .. ..+...||++|||++|.||++|+..|..+++
T Consensus 214 ---------------~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 ---------------RAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ---------------HHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01111222221110 00 0011258999999999999999999988765
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-10 Score=114.30 Aligned_cols=158 Identities=23% Similarity=0.210 Sum_probs=104.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
|--.|.|||..|+||||++-+|--.++.... + |.......++ |++-.+.+||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-P--tigfnve~v~----------------yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-P--TIGFNVETVP----------------YKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-C--CCCcCccccc----------------cccccceeeEccCcccccH
Confidence 4445899999999999999888655443211 1 1111122222 3445699999999999999
Q ss_pred hhhhccCcccceEEeeccccCC--cHHHHHHHHHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv--~~QT~E~l~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.+..++..+|.+|+|||.++-. .....+...+|.. .+..++|++||+|..+. -.
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-------~t-------------- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-------LT-------------- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-------hh--------------
Confidence 9999999999999999998742 2223334444432 34678999999997531 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..++...|..+.+. .+.+.||.+||.+|+|++..++||.+-++
T Consensus 137 ----~~E~~~~L~l~~Lk----------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 137 ----RSEVLKMLGLQKLK----------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ----HHHHHHHhChHHHh----------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 01111111111111 13479999999999999999999876543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-10 Score=122.82 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeee------------eeeEecccc--ccc----hhhhccccccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI------------GATYFPAEN--IRE----RTRELKANATL 854 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~i------------ga~~~~~e~--i~~----r~~~v~~~~~~ 854 (1324)
..|+|+|+|+.|+|||||+.+|+.........+-+..++ |...+.... +.. ...........
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 356799999999999999999975311000000011111 110000000 000 00000000111
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
..+.+.||+|.|.... ...+....++.++|||+.++...+. ......+.|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 2457999999993211 1112234566778999987654222 2223346789999999998621 0000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
+..+...+...+ ..++++++||++|.||..|+.+|..+
T Consensus 168 -----------------~~~~~~~l~~~~-------------~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKIN-------------PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 111112222211 23689999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-10 Score=106.27 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=55.5
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1264 vf~-~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|+ ++.+.||||+|++|.|++|+.|++ |+++++|.|+|.||+|++++|.+|.+|++|||.+
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l 70 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITL 70 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEE
Confidence 554 345789999999999999999997 7899999999999999999999999999999975
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=109.27 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=101.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|+++|..++||||||-.|........ .+ |..+..-.++ |++..|++||..|+.....++.+
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~~-ip--TvGFnvetVt----------------ykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVTT-IP--TVGFNVETVT----------------YKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCccc-cc--ccceeEEEEE----------------eeeeEEeeeeccCchhhhHHHHh
Confidence 88999999999999999975432210 00 1111112222 33445999999999999999999
Q ss_pred ccCcccceEEeeccccC--CcHHHHHHHHHH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~G--v~~QT~E~l~ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
++..+-++|||||+.+. +...-.|..+++ ....+||+|..||.|++..-+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------------------------- 135 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------------------------- 135 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------------------------
Confidence 99999999999998764 222222222333 235689999999999974211
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+|...|.-.-+ -+....+.|+||.+|+|+.+-|.||.+.+
T Consensus 136 pqei~d~leLe~~----------r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 PQEIQDKLELERI----------RDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhccccc----------cCCccEeeccccccchhHHHHHHHHHhhc
Confidence 1222222211111 12445799999999999999888887543
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=128.02 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=61.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccccchhhhccc------cccccCCCEEEEeCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKA------NATLKVPGLLVIDTPG 866 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~e~i~~r~~~v~~------~~~~~~~~I~IIDTPG 866 (1324)
..|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+.. ...+....|+||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4699999999999999999998877655555555 5566665543211111000000 0011223589999999
Q ss_pred Cc----ch---hhhhhhccCcccceEEeeccc
Q 000735 867 HE----SF---TNLRSRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 867 He----~F---~~~r~rg~~~aDiaILVVDa~ 891 (1324)
.. .+ .+...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 22 233444588999999999996
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-10 Score=114.15 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=98.8
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhhcc
Q 000735 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1324)
Q Consensus 799 IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~rg~ 878 (1324)
++|...+|||.||-++..+.+..+.+ ...+|..+- ...+..+ -....+.||||.|++.|.+.+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~f---istvgid~r--------nkli~~~--~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDFR--------NKLIDMD--DKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce---eeeeeeccc--------cceeccC--CcEEEEEEeeccchHHHhhhhHhhh
Confidence 68999999999998877655544332 111221111 0111110 0113599999999999999999999
Q ss_pred CcccceEEeeccccCCcHHHHHHH-HHHHh---cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHH
Q 000735 879 GLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1324)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~ 954 (1324)
+.+|.++||+|+.+.-....+..| ..+.. ..+.+.++.||||+... .+ +..+-..
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e-----r~------------v~~ddg~---- 127 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE-----RA------------VKRDDGE---- 127 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh-----hc------------cccchHH----
Confidence 999999999999886665555444 33333 34778999999998531 00 0000011
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 955 I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+| +||+.+||+||.|++-.|..|...
T Consensus 128 --kla~~y~---------------ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 128 --KLAEAYG---------------IPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred --HHHHHHC---------------CCceeccccccccHhHHHHHHHHH
Confidence 1112222 699999999999998777776543
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=119.49 Aligned_cols=131 Identities=18% Similarity=0.272 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeee---e--------eeeEeccc--------ccc----chhhhc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ---I--------GATYFPAE--------NIR----ERTREL 848 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~---i--------ga~~~~~e--------~i~----~r~~~v 848 (1324)
+..|.|+|+|+.++||||||++|.+..+.....|.+|.. + .+.++... .+. ..+..+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 567889999999999999999999765322222333311 1 11111000 000 000000
Q ss_pred cc---c-------ccc---cCCCEEEEeCCCCcch-------------hhhhhhccC-cccceEEeeccccCCcHHH-HH
Q 000735 849 KA---N-------ATL---KVPGLLVIDTPGHESF-------------TNLRSRGSG-LCDIAILVVDIMHGLEPQT-IE 900 (1324)
Q Consensus 849 ~~---~-------~~~---~~~~I~IIDTPGHe~F-------------~~~r~rg~~-~aDiaILVVDa~~Gv~~QT-~E 900 (1324)
.. . ..+ ..+.|+||||||.... ..+...++. ..+++|+|||+..++..+. .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 00 0 000 1257999999997521 234556677 4569999999999988877 57
Q ss_pred HHHHHHhcCCcEEEEeeccccc
Q 000735 901 SLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 901 ~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.++.+...+.|+|+|+||+|.+
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCC
Confidence 8888888999999999999986
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=109.53 Aligned_cols=156 Identities=24% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
|-+.|.++|--++||||||..|.+..++. +|..-|.....+.. ....++++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~-------------~g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEY-------------DGTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEee-------------cCcEEEEEEecCCccccch
Confidence 44569999999999999999998655432 33333322222111 1113599999999999999
Q ss_pred hhhhccCcccceEEeeccccC--CcHHHHHHHHHH---HhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll---~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
.++.++...|++|+|||.++. +.....+...++ +...+|+.|+.||.|++..
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta----------------------- 134 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA----------------------- 134 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh-----------------------
Confidence 999999999999999998763 222223333333 3456899999999998721
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.....+..-+.-.|+. .+.+.|-.+||++++|+.+-.+++..
T Consensus 135 --a~~eeia~klnl~~lr----------dRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 135 --AKVEEIALKLNLAGLR----------DRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred --cchHHHHHhcchhhhh----------hceEEeeeCccccccCccCcchhhhc
Confidence 1112222222222322 13568999999999999998888753
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=123.90 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
..+.+.||||||...-. ...+..+|.+++|.....|-. +..+.. ....+|.|||+||+|++.. ...
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~------~~~- 190 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGA------TNV- 190 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccch------hHH-
Confidence 45779999999964221 224567888888865543322 112111 1246889999999998631 000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.. +...+...+ ..+... ...| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 ~~-------~~~~~~~~l----~~l~~~---------~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 TI-------ARLMLALAL----EEIRRR---------EDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HH-------HHHHHHHHH----hhcccc---------ccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 000000000 001000 0012 24799999999999999999987753
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-10 Score=122.33 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=110.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccc-cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC-
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ--EGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~--~ge-~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH- 867 (1324)
-+.|-++++|..|+|||+||+.|...... .+. ..|-||.|..+.+. ..++++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------------------ceEEEEecCCcc
Confidence 35678999999999999999999765421 122 45667777655442 35899999991
Q ss_pred ---------cchhhhhhhccC---cccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHH
Q 000735 868 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 868 ---------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1324)
.+|.+++..++- ..=.+.|+||++-++++.....|.+|...++|+.+|+||||+. |.....
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~--k~~~~~----- 267 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ--KKVKRT----- 267 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh--hhcccc-----
Confidence 334444443332 2334678899999999999999999999999999999999985 322110
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 936 ~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...++..| +++... -+.-..|++.+|+.|+.|++.|+-.|.++.
T Consensus 268 -~kKp~~~i~~~f-------------~~l~~~------~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 268 -GKKPGLNIKINF-------------QGLIRG------VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred -ccCccccceeeh-------------hhcccc------ceeccCCceeeecccccCceeeeeehhhhh
Confidence 000000011111 111111 112346888999999999999988877654
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-09 Score=109.97 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=127.9
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
+--|.+.++|+|..++||||+|.+++.+-+..+.... ||..++.. .+.+. .....+.+|||.|++.
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykkt----Igvdfler------qi~v~----~Edvr~mlWdtagqeE 81 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT----IGVDFLER------QIKVL----IEDVRSMLWDTAGQEE 81 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccc----cchhhhhH------HHHhh----HHHHHHHHHHhccchh
Confidence 3347778999999999999999999976665444333 34333221 11111 1112478999999999
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHH-HHHH--hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
|-..+..+++.+...|||++.++.......-.| +-.. ...+|.|+|-||||++.+ ..+ ..
T Consensus 82 fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~-----------~~ 144 (246)
T KOG4252|consen 82 FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQM-----------DK 144 (246)
T ss_pred HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhc-----------ch
Confidence 999999999999999999998885443333333 3222 245999999999999731 000 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHHhHHhhhhccccccee-EEEEE
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCT-VLEVK 1025 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~~m~e~l~~~~~~~~~-VlEvk 1025 (1324)
..++.+...| .+.++-+|++...|+...|..|...+...+...++.+...+-. +-..|
T Consensus 145 ---~evE~lak~l------------------~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~ 203 (246)
T KOG4252|consen 145 ---GEVEGLAKKL------------------HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTY 203 (246)
T ss_pred ---HHHHHHHHHh------------------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCc
Confidence 0011111111 1467789999999999999988877665555545443322111 00111
Q ss_pred EEcCceeEEEEEEEeeeecCCCEEEEcc
Q 000735 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1324)
Q Consensus 1026 ~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g 1053 (1324)
...+ ..+..-..+++..+++|++.+
T Consensus 204 stsp---~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 204 STSP---PSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred cCCC---CcceeeeeeeecCCceeeech
Confidence 1111 122223466777888887644
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-09 Score=104.67 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC----Ccchh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG----He~F~ 871 (1324)
.|.+||.+++|||||+..|++..+.-. -||-+ . |+ .=..||||| |..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv---e------------------~~--d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV---E------------------FN--DKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc----cccee---e------------------cc--CccccCCchhhhhhhHHH
Confidence 389999999999999999986533211 12221 1 11 123799999 43333
Q ss_pred hhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
.-....+..+|++++|-.++++-+ .-.-.++.....|+|=+++|+|+.. . ..
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s---~f~p~f~~~~~k~vIgvVTK~DLae------d-------------------~d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPES---RFPPGFLDIGVKKVIGVVTKADLAE------D-------------------AD 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCccc---cCCcccccccccceEEEEecccccc------h-------------------Hh
Confidence 333445677899999999998632 2222334445678999999999962 1 23
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
+..+..+|.+.| .-+||.+|+....||.+|++.|..
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 445556677665 248999999999999999998864
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-09 Score=114.74 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhh
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~ 872 (1324)
+...|+|+|...+|||+||-.+....+...+.+.+.... ...+.+. .-....+.+|||.|+++|-.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~-------------dg~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVD-------------DGKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEec-------------CCCEEEEeeeecCCCccccc
Confidence 446699999999999999999987777666555544222 2222221 00112489999999999999
Q ss_pred hhhhccCcccceEEeeccccCCcHHHHHH-----HHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHH
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIES-----LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~-----l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~ 945 (1324)
+|...+..+|++|+++++.. +++.+. +-.++. .++|+|+|.+|.|+.. .....+.|..+.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~---p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V 139 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVS---PESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV 139 (198)
T ss_pred ccccCCCCCCEEEEEEEcCC---hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc
Confidence 99888999999999998876 333332 222222 5799999999999852 2222222221100000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 946 ~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+......+. +.+.++.+||++..|+.+.|+..+..
T Consensus 140 -----t~~~g~~lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 -----TYEQGLELAKEI--------------GAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred -----cHHHHHHHHHHh--------------CcceeeeehhhhhCCcHHHHHHHHHH
Confidence 000111111111 34689999999999999988776543
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=117.22 Aligned_cols=171 Identities=18% Similarity=0.285 Sum_probs=88.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-cccC-ce---eeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc-
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEAG-GI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~g-GI---Tq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe- 868 (1324)
..|+|+|.+|+|||||+|+||+-...+ +.++ |+ |.....|..| +.+.++|||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-----------------~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-----------------KFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-----------------S-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-----------------CCCCCeEEeCCCCCC
Confidence 459999999999999999999743221 1111 11 2222222221 23579999999953
Q ss_pred -chhh---hhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeecccc-ccCcccCCCchHHHHHHHHhHH
Q 000735 869 -SFTN---LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 869 -~F~~---~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl-~~~w~~~~~a~~~~~L~~q~~~ 943 (1324)
.|.. +-..++...|++|+|.+ ..+.......++.++.++.||.+|-||+|. +++-.......|.+ . .
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~---e---~ 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNE---E---K 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--H---H---T
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCH---H---H
Confidence 3322 22346788998877765 345566666777888899999999999996 21110011111111 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcc--CCChhhHHHHHHHHHHH
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 944 v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~t--GeGI~eLl~~L~~l~~~ 1005 (1324)
+ ++..-..+...|...|+. ..+||.||+.. ...++.|...|..-++.
T Consensus 171 ~---L~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 171 L---LQEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp H---HHHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred H---HHHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 1 111122344556555543 35888999875 44577777777665543
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=119.70 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccccc--chhhhccccccccCCCEEEEeCCCCcc-
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES- 869 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~--~r~~~v~~~~~~~~~~I~IIDTPGHe~- 869 (1324)
++..|+|+|.+|+|||||+++|++..+..+..++.|.+.....+++...+ ..+ .+..........|.|+||||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~-~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLC-KHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHH-HHcCCcccCCCCeEEEECCCcCcC
Confidence 44569999999999999999999888877777888866554444433221 111 11111111224699999999432
Q ss_pred ------hhhhhhhccCcccceEEeeccc
Q 000735 870 ------FTNLRSRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 870 ------F~~~r~rg~~~aDiaILVVDa~ 891 (1324)
..+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2334445677899999999984
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-09 Score=115.86 Aligned_cols=147 Identities=25% Similarity=0.265 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc--
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~-- 869 (1324)
.-.|+|+|+|.+|+|||||+.+|+..++.... ++.++-.|+-- ...+. .+..++|.||-|+-+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h----~a~Lp-----sg~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLH----SAHLP-----SGNFVLLTDTVGFISDL 240 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhh----hccCC-----CCcEEEEeechhhhhhC
Confidence 34689999999999999999999977765433 22233222210 00010 123489999999643
Q ss_pred -------hhhhhhhccCcccceEEeeccccCCc-HHHHHHHHHHHhcCCc-------EEEEeeccccccCcccCCCchHH
Q 000735 870 -------FTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 870 -------F~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll~~~~vP-------~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
|..... -...+|++|.|+|++|... .|-...+..|+..++| +|=|=||+|...++.+
T Consensus 241 P~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------- 312 (410)
T KOG0410|consen 241 PIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------- 312 (410)
T ss_pred cHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------
Confidence 433322 3556899999999999754 4555566777888875 4556677775422100
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+ ....|++||++|+|+.+|+..+...
T Consensus 313 -------------------------------~E----------~n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 313 -------------------------------EE----------KNLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred -------------------------------cc----------cCCccccccccCccHHHHHHHHHHH
Confidence 00 1137899999999999999887543
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-09 Score=112.05 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcE--EEEeeccccccCcccCCCchH
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPI 933 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~--IVaINKiDl~~~w~~~~~a~~ 933 (1324)
...++||.|.|.. ...... ...+|.+|+|||+.++...+.. ....+.+ ++++||+|+... ...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~~----~~~-- 155 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAPM----VGA-- 155 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcccc----ccc--
Confidence 3568999999931 111111 2236889999999987653211 1123344 999999998621 000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 934 ~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+..+...+...+ ...++|+|||++|+||.+|+++|..+
T Consensus 156 -----------------~~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 156 -----------------DLGVMERDAKKMR-------------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred -----------------cHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 1112222332221 23689999999999999999998743
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=107.42 Aligned_cols=64 Identities=30% Similarity=0.388 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcch----hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHH-hcCCcEEEEeecc
Q 000735 856 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKV 919 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~-~~~vP~IVaINKi 919 (1324)
..+|+||||||..+. ..++..++..+|++|+|+++.+.+..+....|..+. ...-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 357999999997542 245667789999999999999987766666665444 4455688999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=97.26 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=71.7
Q ss_pred ceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeecc
Q 000735 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1324)
Q Consensus 1018 ~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~ 1097 (1324)
+++|+|++..+|.|++++++|++|+|+.||.|+++ ..+.+||+|+++.+. ..+++.++++|.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988763 346699999988751 2345556666666 4
Q ss_pred cccc-ccCCCceEEeCCCccHHHHHH
Q 000735 1098 GLEH-AIAGTGLYVVGPDDDLEDVKE 1122 (1324)
Q Consensus 1098 gL~~-~~aG~~l~v~~~~~~~~~~~~ 1122 (1324)
||+. +.+|+.|+++.++.++..+..
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 8887 489999999999887766644
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=120.97 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=103.0
Q ss_pred hhcCCCcccCCCCccccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhcccccc
Q 000735 774 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1324)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~ 853 (1324)
..+.+++++..|...+. .+.++|+|.+|+|||||++.++...+....+..+|..+...++ .
T Consensus 151 LeqVrqhl~rlPsIDp~---trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~----------------d 211 (620)
T KOG1490|consen 151 LEQVRQHLSRLPAIDPN---TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL----------------D 211 (620)
T ss_pred HHHHHHHHhcCCCCCCC---cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh----------------h
Confidence 33445666666654433 3459999999999999999998776655444444444333222 3
Q ss_pred ccCCCEEEEeCCCCcch----hh---hhh-h-ccCcccceEEeecccc--CCcH--H--HHHHHHHHHhcCCcEEEEeec
Q 000735 854 LKVPGLLVIDTPGHESF----TN---LRS-R-GSGLCDIAILVVDIMH--GLEP--Q--TIESLNLLKMRNTEFIVALNK 918 (1324)
Q Consensus 854 ~~~~~I~IIDTPGHe~F----~~---~r~-r-g~~~aDiaILVVDa~~--Gv~~--Q--T~E~l~ll~~~~vP~IVaINK 918 (1324)
|+.-.+.+|||||..+- .| |.+ . -+.+--.|++++|.+. |... | -+.+|.-|. .|.|+|+|+||
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK 290 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNK 290 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeec
Confidence 44456899999995442 11 111 1 1122345788888864 4332 2 222333222 46899999999
Q ss_pred cccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHH
Q 000735 919 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 998 (1324)
Q Consensus 919 iDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~ 998 (1324)
||.... .++. ..-..++..+... +.++|+.+|+.+-+||.++...
T Consensus 291 ~D~m~~------edL~---------------~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 291 IDAMRP------EDLD---------------QKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred ccccCc------cccC---------------HHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHH
Confidence 998731 2211 1112233333332 2479999999999999887655
Q ss_pred HHH
Q 000735 999 LVQ 1001 (1324)
Q Consensus 999 L~~ 1001 (1324)
-+.
T Consensus 336 ACe 338 (620)
T KOG1490|consen 336 ACE 338 (620)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=108.65 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
...+.|+|||.+|+|||||+|+|++..+.. +...+.|........ .+.+..|+||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~----------------~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR----------------TRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE----------------EECCeEEEEEECCCCCch
Confidence 445679999999999999999999876532 111111111100000 112346999999997654
Q ss_pred hhhh-------hhcc--CcccceEEeecccc-CCcHHHHHHHHHHHh-----cCCcEEEEeeccccc
Q 000735 871 TNLR-------SRGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKM-----RNTEFIVALNKVDRL 922 (1324)
Q Consensus 871 ~~~r-------~rg~--~~aDiaILVVDa~~-Gv~~QT~E~l~ll~~-----~~vP~IVaINKiDl~ 922 (1324)
..+. ..++ ...|++|||+..+. .+.......+..+.. .-.++||++|+.|.+
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2211 1111 25889999965543 344333444444332 125799999999975
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.4e-09 Score=106.38 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
-.++++|--|+||||||..|-.......- -|.|.....+. +.+-.++.+|..||..-...+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHH
Confidence 35899999999999999999754432110 13333222222 222358999999999888888
Q ss_pred hhccCcccceEEeeccccC-CcHHHHHHHHHHH----hcCCcEEEEeecccccc
Q 000735 875 SRGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 923 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~QT~E~l~ll~----~~~vP~IVaINKiDl~~ 923 (1324)
..++..||.+|++||+.+- .....+..+..|. ..++|++|.+||||+++
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 8999999999999999763 2233444443332 35799999999999975
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.2e-08 Score=108.34 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F 870 (1324)
..++.|+|||.+|+|||||+++|++..+. .+...+.|..+..+... +....|+||||||..++
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~----------------~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT----------------VDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCcc
Confidence 34567999999999999999999987643 22333344443332222 22345999999997665
Q ss_pred h-----h-----hhhhccC--cccceEEeecccc-CCcHHHHHHHHHHHh-cC----CcEEEEeeccccc
Q 000735 871 T-----N-----LRSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1324)
Q Consensus 871 ~-----~-----~r~rg~~--~aDiaILVVDa~~-Gv~~QT~E~l~ll~~-~~----vP~IVaINKiDl~ 922 (1324)
. . ...+++. ..|++|+|..++. .+.......++.+.. ++ .++|||+|++|..
T Consensus 93 ~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 93 VMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 2 1 0122332 4677777765553 344444455554443 23 4799999999986
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-08 Score=113.96 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----cccc------------cccCc---eeeeeeeeEeccccccchhhhcccccccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGG---ITQQIGATYFPAENIRERTRELKANATLK 855 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t----~v~~------------ge~gG---ITq~iga~~~~~e~i~~r~~~v~~~~~~~ 855 (1324)
..|+|+|++++|||||+++|... ++.+ ....| .|.+. .|+|..... +.....+
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTeP--kfvP~kAvE-----I~~~~~~- 89 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEP--KFVPNEAVE-----ININEGT- 89 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCC--ccccCcceE-----EeccCCC-
Confidence 45999999999999999999987 4431 12233 22221 122222111 1110000
Q ss_pred CCCEEEEeCCCCcchhh---h--------------------------hhhccC-cccceEEee-ccc------cCCcHHH
Q 000735 856 VPGLLVIDTPGHESFTN---L--------------------------RSRGSG-LCDIAILVV-DIM------HGLEPQT 898 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~---~--------------------------r~rg~~-~aDiaILVV-Da~------~Gv~~QT 898 (1324)
...+.||||+|+..=.. + +...+. .+|++|||. |.+ ++....-
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 13599999999543211 1 223345 799999999 775 4566677
Q ss_pred HHHHHHHHhcCCcEEEEeecccc
Q 000735 899 IESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 899 ~E~l~ll~~~~vP~IVaINKiDl 921 (1324)
...+..|+..++||||++|++|-
T Consensus 170 e~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 170 ERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHhcCCCEEEEEECcCC
Confidence 78899999999999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=103.43 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccC--ceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAG--GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~g--GITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
.|++||..++||||+...|-+.... .++. |.|.++....+.. +..-.|+|||+||+..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~---------------~~~~~l~iwD~pGq~~~~~~ 64 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRF---------------LSFLPLNIWDCPGQDDFMEN 64 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEEC---------------TTSCEEEEEEE-SSCSTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEec---------------CCCcEEEEEEcCCccccccc
Confidence 3899999999999999988754322 1111 2333332222210 11235999999999887554
Q ss_pred -----hhhccCcccceEEeeccccCCcHHHH----HHHHHHHh--cCCcEEEEeeccccccCcccCCCchHHHHHHHHhH
Q 000735 874 -----RSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 874 -----r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~ll~~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~ 942 (1324)
+..-++.|.++|+|+|+...-....+ ..+..|.. .++.+.|+|+|||++. .+.+..
T Consensus 65 ~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~~------ 131 (232)
T PF04670_consen 65 YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDEREE------ 131 (232)
T ss_dssp THTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHHH------
T ss_pred cccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHHH------
Confidence 45667899999999999832222222 23333433 4689999999999873 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccC
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1324)
Q Consensus 943 ~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tG 989 (1324)
-|......+...+...+++ .+.++.||-...
T Consensus 132 ----~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~ 162 (232)
T PF04670_consen 132 ----IFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE 162 (232)
T ss_dssp ----HHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST
T ss_pred ----HHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc
Confidence 2233344555555554432 478999998863
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-08 Score=112.91 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeee--------------eEeccccccchh-hhc-c--ccccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA--------------TYFPAENIRERT-REL-K--ANATL 854 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga--------------~~~~~e~i~~r~-~~v-~--~~~~~ 854 (1324)
...+|.|+|.+|+||||||.+|+..........-|.-+++. ..+....+.... ..+ . .....
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~ 182 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPL 182 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhh
Confidence 45679999999999999999887532111111111111110 111110000000 000 0 00112
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHH
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1324)
....++||++-|....-.... + ..+.-|.|+++..|.. + .+.+-.....+-||+|||+|++. ...+
T Consensus 183 ~~~d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~d-k---plKyp~~f~~ADIVVLNKiDLl~------~~~~- 248 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGED-K---PLKYPHMFAAASLMLLNKVDLLP------YLNF- 248 (290)
T ss_pred cCCcEEEEECCCCccCCCccc--h-hhceeEEEEECccccc-c---chhccchhhcCcEEEEEhHHcCc------ccHH-
Confidence 234688999988411111000 0 1233456777777642 1 11222334678899999999962 1110
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 935 ~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.+..+...+...+ ...+||++||++|+|++.|+.||..
T Consensus 249 ----------------dle~~~~~lr~ln-------------p~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 249 ----------------DVEKCIACAREVN-------------PEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHhhC-------------CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 1222333332221 3478999999999999999999864
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-08 Score=112.26 Aligned_cols=171 Identities=22% Similarity=0.244 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccccc-------------Cc-----------eeeeeeeeEeccccccchhhhc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-------------GG-----------ITQQIGATYFPAENIRERTREL 848 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~-------------gG-----------ITq~iga~~~~~e~i~~r~~~v 848 (1324)
+.++|+|.|.+|+|||||++.|...-...+.. || .+.+.+.|.-+... +.....+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~at-RG~lGGl 106 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMAT-RGSLGGL 106 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE----SSHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCc-CCCCCCc
Confidence 56789999999999999999986322111110 00 01122222222211 1000000
Q ss_pred cc-------cccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeecccc
Q 000735 849 KA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 849 ~~-------~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl 921 (1324)
.. -+..-.+.+.||-|-|.--- =..-...||++|||+-...|-.-|.+..= .+.++=||||||.|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG----imEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAG----IMEIADIFVVNKADR 179 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TT----HHHH-SEEEEE--SH
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhh----hhhhccEEEEeCCCh
Confidence 00 01112456999999983211 11135679999999998887666654321 012367999999997
Q ss_pred ccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 922 ~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.. ++ .+ ...+...|....-. ...| ..||+.|||.+|.||++|++.|..
T Consensus 180 ~g-------A~----------~~-------~~~l~~~l~l~~~~------~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 180 PG-------AD----------RT-------VRDLRSMLHLLRER------EDGW--RPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HH-------HH----------HH-------HHHHHHHHHHCSTS------CTSB----EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HH-------HH----------HH-------HHHHHHHHhhcccc------ccCC--CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 52 11 01 11222222211100 0112 369999999999999999999876
Q ss_pred HH
Q 000735 1002 WT 1003 (1324)
Q Consensus 1002 l~ 1003 (1324)
+.
T Consensus 228 ~~ 229 (266)
T PF03308_consen 228 HR 229 (266)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-08 Score=108.82 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=98.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------------cCc-----------eeeeeeeeEeccccccchhh
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPAENIRERTR 846 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-------------~gG-----------ITq~iga~~~~~e~i~~r~~ 846 (1324)
.-|+++|+|.|.+|+|||||++.|...-+..|. .|| ++.+.++|+-+..+- ....
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr-G~lG 126 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR-GTLG 126 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC-ccch
Confidence 346778999999999999999998532111111 111 223444444433221 0000
Q ss_pred hccc-------cccccCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeecc
Q 000735 847 ELKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 847 ~v~~-------~~~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKi 919 (1324)
.+.. -+.--++.+.||-|-|.---- .--...||++|+|.-.--|-.-|.+..= .+.+-=||||||.
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G----imEiaDi~vINKa 199 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG----IMEIADIIVINKA 199 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh----hhhhhheeeEecc
Confidence 1100 001123568999998842111 1124568999999877777777776541 1234568999999
Q ss_pred ccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 920 Dl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
|+.. +. .+. . .+...|... . .+|.... ...|+|.|||.+|+||++|++.|
T Consensus 200 D~~~-------A~--~a~--------r-------~l~~al~~~---~-~~~~~~~--W~ppv~~t~A~~g~Gi~~L~~ai 249 (323)
T COG1703 200 DRKG-------AE--KAA--------R-------ELRSALDLL---R-EVWRENG--WRPPVVTTSALEGEGIDELWDAI 249 (323)
T ss_pred Chhh-------HH--HHH--------H-------HHHHHHHhh---c-ccccccC--CCCceeEeeeccCCCHHHHHHHH
Confidence 9742 11 011 1 111111110 0 0121122 24699999999999999999999
Q ss_pred HHHHH
Q 000735 1000 VQWTQ 1004 (1324)
Q Consensus 1000 ~~l~~ 1004 (1324)
..+..
T Consensus 250 ~~h~~ 254 (323)
T COG1703 250 EDHRK 254 (323)
T ss_pred HHHHH
Confidence 87653
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=104.90 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc--C----c--eeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--G----G--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~--g----G--ITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG 866 (1324)
..|.|+|..|+|||||++.|.++.+..... . . -|..+....+... +. .. ...|+||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~---e~------~~---~l~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE---EN------GV---KLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE---ET------CE---EEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec---cC------Cc---ceEEEEEeCCC
Confidence 458999999999999999999876543220 0 0 0111111111110 00 00 12599999999
Q ss_pred Ccchhhh------------------h------hh---ccCcccceEEeeccc-cCCcHHHHHHHHHHHhcCCcEEEEeec
Q 000735 867 HESFTNL------------------R------SR---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1324)
Q Consensus 867 He~F~~~------------------r------~r---g~~~aDiaILVVDa~-~Gv~~QT~E~l~ll~~~~vP~IVaINK 918 (1324)
+.+..+. . .| .-...|++|++|+++ +|+.+..++.++.|... +++|.||.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 6543221 0 01 112368999999985 79999999999988766 889999999
Q ss_pred cccc
Q 000735 919 VDRL 922 (1324)
Q Consensus 919 iDl~ 922 (1324)
.|.+
T Consensus 152 aD~l 155 (281)
T PF00735_consen 152 ADTL 155 (281)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9987
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=90.10 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=66.8
Q ss_pred ceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeec
Q 000735 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1324)
Q Consensus 1018 ~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~ 1096 (1324)
+++|+|++..+|+|++++++|++|+|++||.|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999998864 34667888886541 1122 233444456
Q ss_pred ccccc-ccCCCceEEeCCCccHHHHH
Q 000735 1097 QGLEH-AIAGTGLYVVGPDDDLEDVK 1121 (1324)
Q Consensus 1097 ~gL~~-~~aG~~l~v~~~~~~~~~~~ 1121 (1324)
.||.. +.+|+.|+++.++.++..+.
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~ 90 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIG 90 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhh
Confidence 67776 68999999999998776554
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=99.95 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
..++++|.+++||||++.+.+...+.......+......+.+..+ .....|+.|||.|++.|..++
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn--------------~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN--------------RGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc--------------cCcEEEEeeecccceeecccc
Confidence 458999999999999999999776654333322222111111111 111349999999999999999
Q ss_pred hhccCcccceEEeeccccCCcHHHHHHHH--HHH-hcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHH
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--ll~-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~ 951 (1324)
..++-..-+||+++|....++.+..-.|. +++ ..|+|||+|.||+|... +.
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-----r~--------------------- 130 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-----RK--------------------- 130 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-----cc---------------------
Confidence 98888899999999998776666555553 222 24689999999999641 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+. + ....++.++.+||+++.|..--+.+|.+.
T Consensus 131 -------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 131 -------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred -------cccccce---e----eecccceeEEeecccccccccchHHHhhh
Confidence 0000010 0 11356799999999999998888887654
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=97.90 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=87.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEe----------cccccc-c-hhhhcccc----------c
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF----------PAENIR-E-RTRELKAN----------A 852 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~----------~~e~i~-~-r~~~v~~~----------~ 852 (1324)
..|.|+|++||||||||.+++..-......+-||.++.+... +.-.+. . -| +...+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C-H~da~m~~~ai~~l~~ 92 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC-HLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc-CCcHHHHHHHHHHHhh
Confidence 469999999999999999986433222333334444433100 000000 0 00 00110 0
Q ss_pred cccCCCEEEEeCCCCcchhhhhhhccCccc-ceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCc
Q 000735 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a 931 (1324)
.+..-.|+||-+.| +..... ...+.| +-|+|||...|..---.-. --.. .-=|+||||+|+.. ..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~g---P~i~-~aDllVInK~DLa~------~v 158 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGG---PGIF-KADLLVINKTDLAP------YV 158 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCC---Ccee-EeeEEEEehHHhHH------Hh
Confidence 11123689999988 222111 123455 8899999998753110000 0000 13478999999963 11
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 932 ~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+ .+........+ +.+..|||.+|++||+|+.+++.||..+
T Consensus 159 ~~-----------------dlevm~~da~~-------------~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GA-----------------DLEVMARDAKE-------------VNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred Cc-----------------cHHHHHHHHHH-------------hCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11 01111111111 2356899999999999999999888643
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-07 Score=102.37 Aligned_cols=131 Identities=23% Similarity=0.303 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCc--eeeeeeeeEe-ccc-cccchhhhccc-----------------
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYF-PAE-NIRERTRELKA----------------- 850 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gG--ITq~iga~~~-~~e-~i~~r~~~v~~----------------- 850 (1324)
---|.|.+||.-.+||||+|+.|+...+..-..|. .|..+.+.+. +.+ .+-.....+..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 34578999999999999999999977654222111 1111111111 000 00011111100
Q ss_pred --ccccc---CCCEEEEeCCCC-----------cchhhhhhhccCcccceEEeecccc-CCcHHHHHHHHHHHhcCCcEE
Q 000735 851 --NATLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNTEFI 913 (1324)
Q Consensus 851 --~~~~~---~~~I~IIDTPGH-----------e~F~~~r~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~ll~~~~vP~I 913 (1324)
...+. ...|+||||||. .+|.......+..||++|||+|+.. .+.+.+.++|..|+...-.+-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiR 215 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIR 215 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeE
Confidence 00111 135999999994 4466666677788999999999864 578899999999999888899
Q ss_pred EEeeccccc
Q 000735 914 VALNKVDRL 922 (1324)
Q Consensus 914 VaINKiDl~ 922 (1324)
||+||.|.+
T Consensus 216 VVLNKADqV 224 (532)
T KOG1954|consen 216 VVLNKADQV 224 (532)
T ss_pred EEecccccc
Confidence 999999986
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.7e-07 Score=90.81 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch-
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F- 870 (1324)
+.-.|+|+|.-++|||.||..|+..+...+. .-.+..+|....+.+.... -..+.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rga-------------rE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGA-------------REQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCCh-------------hheEEEeecccccCch
Confidence 3445999999999999999999987765432 2222223333333322100 024899999999888
Q ss_pred hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHh-----cCCcEEEEeeccccc
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-----RNTEFIVALNKVDRL 922 (1324)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~-----~~vP~IVaINKiDl~ 922 (1324)
..+-..+++.+|+.|||++.++.-..|-.+.|.--.. ..+||||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6666778899999999999998544454444432211 248999999999984
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=112.05 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=75.2
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
..++...|+|+|.-|+|||||+-.|+...+...- ....--+.+|.+ +.-....++|+||+-...
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V----P~rl~~i~IPad------------vtPe~vpt~ivD~ss~~~ 68 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV----PRRLPRILIPAD------------VTPENVPTSIVDTSSDSD 68 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccc----cccCCccccCCc------------cCcCcCceEEEecccccc
Confidence 3455666999999999999999999876544211 111111112211 110112389999986655
Q ss_pred hhhhhhhccCcccceEEeeccccC--CcHHHHHHHHHHHh-----cCCcEEEEeeccccccC
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKM-----RNTEFIVALNKVDRLYG 924 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll~~-----~~vP~IVaINKiDl~~~ 924 (1324)
-......-++.+|+++||++.++. +..-+..+|-+++. .++|+|+|.||+|...+
T Consensus 69 ~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 69 DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 444555678899999999988762 22222233334443 46899999999998754
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=95.63 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=68.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch---
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F--- 870 (1324)
.|+|||..|+|||||+|.|++..+.... ..++|+.+...... +....|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999987753322 23344444333222 22346999999996432
Q ss_pred ----hhhhh----hccCcccceEEeeccccCCcHHHHHHHHHHHh-cC----CcEEEEeeccccc
Q 000735 871 ----TNLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1324)
Q Consensus 871 ----~~~r~----rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~-~~----vP~IVaINKiDl~ 922 (1324)
..... ......+++|||+.+. .++......|..+.. .+ ..+||++|..|.+
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 11122 2345689999999987 677767766665543 22 3689999999976
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-08 Score=112.36 Aligned_cols=66 Identities=32% Similarity=0.394 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-------CcHHHHHHHHHHHhcC-CcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRN-TEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~ll~~~~-vP~IVaINKiDl~ 922 (1324)
+.+++||.|||.+|...+..|.+.+|.++|+|.+.-| ...||.+|..+...++ .++||.+||||..
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998433 3589999999999997 5789999999965
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.7e-07 Score=92.82 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=66.7
Q ss_pred hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHH
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~ 949 (1324)
|..+..+.+..||++|+|+|+.++...+....+.++...+.|+|+|+||+|++.. . .+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~---~~------------ 59 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------E---VL------------ 59 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------H---HH------------
Confidence 3455666677899999999999877766666666666678999999999998520 0 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.... .+... ..+++|++||++|.|+.+|+..|..+++
T Consensus 60 ---~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 60 ---EKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred ---HHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 0000 01000 1247899999999999999998876653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=98.71 Aligned_cols=115 Identities=25% Similarity=0.393 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc------c----CceeeeeeeeEeccccccchhhhccccccccCCCEEEE
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------A----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 862 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge------~----gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~II 862 (1324)
.+.+|.++|..|+|||||++.|+++.+.... + .++...+....+.-+.. ...|++|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~--------------~~~l~vI 87 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--------------HLNLTVI 87 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe--------------EEEEEEe
Confidence 3567999999999999999999987544331 1 11112222222211111 1249999
Q ss_pred eCCCCcchhhhh------------------------hhcc----CcccceEEeecc-ccCCcHHHHHHHHHHHhcCCcEE
Q 000735 863 DTPGHESFTNLR------------------------SRGS----GLCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFI 913 (1324)
Q Consensus 863 DTPGHe~F~~~r------------------------~rg~----~~aDiaILVVDa-~~Gv~~QT~E~l~ll~~~~vP~I 913 (1324)
||||+-+|.... .|.. ...++||+.|-. .||+.+..++.+..|... +-+|
T Consensus 88 DtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlI 166 (373)
T COG5019 88 DTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLI 166 (373)
T ss_pred ccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCee
Confidence 999977764320 0111 125788888876 489999999999887654 7789
Q ss_pred EEeeccccc
Q 000735 914 VALNKVDRL 922 (1324)
Q Consensus 914 VaINKiDl~ 922 (1324)
-||-|.|.+
T Consensus 167 PVI~KaD~l 175 (373)
T COG5019 167 PVIAKADTL 175 (373)
T ss_pred eeeeccccC
Confidence 999999986
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-07 Score=103.34 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=60.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeee--eeeEeccccccchhhhccccccccCCCEEEEeCCCCcc-----
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI--GATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~i--ga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~----- 869 (1324)
|+|+|.+++|||||+++|++.++..+..++.|.+. |...++.......+.... ...+....|.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~-~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVK-PKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhC-CceeeeeEEEEEECCCcCCCCchh
Confidence 68999999999999999999888777777777554 444443221110010000 0111122599999999432
Q ss_pred --hhhhhhhccCcccceEEeeccc
Q 000735 870 --FTNLRSRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~ 891 (1324)
+.+.....++.||++|+|||+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3333445567899999999975
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=104.29 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c--ccCceeeee---eee----------EeccccccchhhhccccccccC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQI---GAT----------YFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-g--e~gGITq~i---ga~----------~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
+.-+|+|+|++|+|||||+-+|....+.. | ..+-||.+. |+. .+++............-..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 44579999999999999999997532211 1 111122111 000 0000000000000000012445
Q ss_pred CCEEEEeCCCCcchh---hhhhh---ccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-------EEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFT---NLRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~---~~r~r---g~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-------~IVaINKiDl~ 922 (1324)
..++||||||...+. ..... +...+.-.+||++++.+....+.-...+....++| -=|++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 689999999966332 22222 23334566999999887654443333333333232 24778999975
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-07 Score=99.35 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=103.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhhh
Q 000735 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1324)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~r 876 (1324)
|.|+|..++|||+++.+.++.++.......|..+...-.+.|+. .....+.|||..|++.|.+|+.-
T Consensus 28 ~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 28 VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhhhhcceEEE
Confidence 88999999999999999988776543333332222211222221 11124789999999999999999
Q ss_pred ccCcccceEEeeccccCCcHHHHHHH-HHHHh-------cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHH
Q 000735 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~-------~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef 948 (1324)
+++.+.++.+|+|.+...+....-.| +-|.. .-+|+|+..||||... |-..
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~~-------------------- 153 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAKN-------------------- 153 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhhh--------------------
Confidence 99999999999999886654333333 22211 2367899999999742 1100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+-+...++| +.-++.||++.+.||++....|+..
T Consensus 154 -~~~~~~d~f~keng--------------f~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 154 -EATRQFDNFKKENG--------------FEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred -hhHHHHHHHHhccC--------------ccceeeeccccccChhHHHHHHHHH
Confidence 00111222233343 3578999999999999988887753
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=103.27 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=62.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc---
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~--- 869 (1324)
+.|+|+|.+++|||||+++|++.....+..++.|.+ +|...++....... ..+.....+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l-~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKL-AEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhh-HHhcCCccccCceEEEEECCCCCCCCC
Confidence 469999999999999999999988766666777754 44554443211100 000001111123599999999432
Q ss_pred ----hhhhhhhccCcccceEEeeccc
Q 000735 870 ----FTNLRSRGSGLCDIAILVVDIM 891 (1324)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~ 891 (1324)
..+...+.++.||++|+|||+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2334445678899999999985
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-06 Score=102.38 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCcchhh----hhhh--ccCcccceEEeeccccCCcHHHHHHHHHHH-hcCCcEEEEeeccccc
Q 000735 856 VPGLLVIDTPGHESFTN----LRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~----~r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~ll~-~~~vP~IVaINKiDl~ 922 (1324)
...+.||||||...... .... ....+|.++||+|++.|- ...+.+.... ..+ +--|++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-IDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-CCEEEEeeecCC
Confidence 35699999999654211 1111 123579999999997752 2333333222 223 356789999975
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=92.33 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch---
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F--- 870 (1324)
.|.++|.+.+|||||+..|.++. +..+++...|. +.....|+.+.|.++|.||.-.-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~------------------vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTT------------------VPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEE------------------ecceEeccccceeeecCcchhccccc
Confidence 48999999999999999998753 33333222211 11223466788999999995332
Q ss_pred ----hhhhhhccCcccceEEeeccccCC
Q 000735 871 ----TNLRSRGSGLCDIAILVVDIMHGL 894 (1324)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv 894 (1324)
...+...++.|+++++|+|+...+
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCcc
Confidence 223445577899999999987644
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=94.37 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=65.5
Q ss_pred CcchhhhhhhccCcccceEEeeccccCC-cHHHHH-HHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E-~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
++.|..++...++.+|++|+|+|+.+.. ....+. ++..+...++|+|||+||+|+... ... .
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----~------ 86 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----E------ 86 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH----H------
Confidence 3667777777899999999999998643 443333 344555678999999999998521 000 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
......+...| ++++.+||++|.||.+|+..|..
T Consensus 87 --------~~~~~~~~~~g---------------~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 --------KEQLDIYRNIG---------------YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred --------HHHHHHHHHCC---------------CeEEEEecCCchhHHHHHhhhcC
Confidence 01111222222 48999999999999999988753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.2e-06 Score=97.02 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=39.0
Q ss_pred cCCCEEEEeCCCCcchhhh-------hhhc-----cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 855 KVPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~-------r~rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.+.||||||...+... ..+. ...++..+||+|++.|.. ....+......--+.-+++||+|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCC
Confidence 3457999999996543221 1111 235788999999997542 2222222211113457899999964
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=90.73 Aligned_cols=104 Identities=22% Similarity=0.162 Sum_probs=66.4
Q ss_pred CCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
|.+..|..++..++..+|++|+|||+.+......... .....+.|+|+|+||+|++..+ .....+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~------~~~~~~------- 83 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD------KNLVRI------- 83 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC------CCHHHH-------
Confidence 5555588999999999999999999987543222222 2233578999999999986311 000000
Q ss_pred HHHHHHHHHHHH--HHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 945 QNEFNMRLVQIV--TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 945 ~~ef~~~l~~I~--~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.... ..+...++ ...++|++||++|.||.+|+..|..++
T Consensus 84 --------~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 --------KNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------HHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0000 00111111 113689999999999999999887654
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.6e-06 Score=94.21 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=40.6
Q ss_pred cCCCEEEEeCCCCcchhhhhh-------hc-----cCcccceEEeeccccCCcHHHHHHHHHHH-hcCCcEEEEeecccc
Q 000735 855 KVPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~-------rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll~-~~~vP~IVaINKiDl 921 (1324)
..+.+.||||||+..+..... +. ...+|.++||+|++.| ..+...+.... ..+ +.-+++||+|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 346799999999765422211 11 2348999999999754 33333333222 233 46789999997
Q ss_pred c
Q 000735 922 L 922 (1324)
Q Consensus 922 ~ 922 (1324)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 5
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=99.78 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=65.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-ccc-CceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh-
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~-ge~-gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~- 871 (1324)
..|+|||.+|+|||||+|.|++..+.. ... +++|. +..++.. +....|+||||||..++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 459999999999999999999876432 221 23332 2111111 122459999999976531
Q ss_pred -----hh----hhhccC--cccceEEeeccccC-CcHHHHHHHHHHH---hcC--CcEEEEeeccccc
Q 000735 872 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLK---MRN--TEFIVALNKVDRL 922 (1324)
Q Consensus 872 -----~~----r~rg~~--~aDiaILVVDa~~G-v~~QT~E~l~ll~---~~~--vP~IVaINKiDl~ 922 (1324)
.. ..+.+. .+|++|||+.+... ........++.+. -.. -.+||++|..|.+
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11 112333 47888888876532 2122333344332 222 4689999999987
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=86.73 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=54.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcch-h
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-T 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F-~ 871 (1324)
..|+++|.+.+||||||..|+.+.-. ..++...|.-.|. ..|++..|.++|.||.-.- +
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGv------------------i~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGV------------------IHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecce------------------EEecCceEEEecCcccccccc
Confidence 34999999999999999999977543 2233222222222 2344556999999995332 2
Q ss_pred hh------hhhccCcccceEEeeccccC
Q 000735 872 NL------RSRGSGLCDIAILVVDIMHG 893 (1324)
Q Consensus 872 ~~------r~rg~~~aDiaILVVDa~~G 893 (1324)
.- +...++.+|++++|+|+..+
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 12 22345679999999999754
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.7e-06 Score=99.00 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcchhh-h---hh--hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 856 VPGLLVIDTPGHESFTN-L---RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~-~---r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.+.+.||||||+..... + .. .....+|-++||+|++.|-.. ...+......--+--|++||+|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 45799999999654321 1 11 123457889999999877432 223333333324667899999974
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=81.24 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=100.6
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe 868 (1324)
..++-+..|.++|....|||||+-...+...... .|+..|..+.... ..+.. ....+.|||..|++
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt------~~i~~----t~IsfSIwdlgG~~ 80 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKT------VSIRG----TDISFSIWDLGGQR 80 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeE------EEecc----eEEEEEEEecCCcH
Confidence 3455566799999999999999999887654321 2333333222110 00000 00138899999999
Q ss_pred chhhhhhhccCcccceEEeeccccCCcHHH-HHHHHHHHhcC---CcEEEEeeccccccCcccCCCchHHHHHHHHhHHH
Q 000735 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMRN---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT-~E~l~ll~~~~---vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v 944 (1324)
.|.++..-....+-.+++++|.+...+-.. .++.++++..| +| |++.+|.|..-.. ..++...+..|
T Consensus 81 ~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~l----p~e~Q~~I~~q---- 151 (205)
T KOG1673|consen 81 EFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDL----PPELQETISRQ---- 151 (205)
T ss_pred hhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcC----CHHHHHHHHHH----
Confidence 999998887777888899999887443332 23446777665 34 5689999975211 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 945 ~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
.+. ++. - -+.++|.+|+-...||..+|..++
T Consensus 152 ----------ar~-YAk-~-------------mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 152 ----------ARK-YAK-V-------------MNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred ----------HHH-HHH-H-------------hCCcEEEeeccccccHHHHHHHHH
Confidence 010 111 0 125899999999999999887764
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=84.18 Aligned_cols=89 Identities=21% Similarity=0.182 Sum_probs=60.6
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHHHHhc--CCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~ 953 (1324)
+.+..+|++|+|||+.+++..+......++... ++|+|+|+||+|++.. . . +.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~----~---------------~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W----V---------------TA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H----H---------------HH
Confidence 457789999999999987766666666666543 4899999999998620 0 0 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+..+... + .+.+|++||++|.|+..|+..|..++
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHHH
Confidence 111112110 1 12368999999999999999886543
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-05 Score=81.26 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=56.4
Q ss_pred cceEEeeccccCCcHHHHHHH-HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000735 882 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960 (1324)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l-~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~ 960 (1324)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . . +...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-------~---~---------------~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-------E---V---------------LRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-------H---H---------------HHHHHHHHH
Confidence 789999999887655544444 4666778999999999998621 0 0 001111111
Q ss_pred HcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHH
Q 000735 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 961 e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.. ....+|++||.+|.|+..|+..|...+
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999987654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=85.97 Aligned_cols=99 Identities=22% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCCCcc-hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhH
Q 000735 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 864 TPGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~ 942 (1324)
-|||.. ..+.....+..+|++|+|+|+..+........+..+ .+.|+|+++||+|++.. . .+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~-------~---~~----- 64 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP-------K---KT----- 64 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh-------H---HH-----
Confidence 488754 345566778899999999999887665544444443 35799999999998521 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHH
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 943 ~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
......+... ...++++||++|.|+..|+..|...++
T Consensus 65 ----------~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 65 ----------KKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ----------HHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0011111111 136899999999999999999877653
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.8e-05 Score=91.66 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~ 873 (1324)
...|.|||..++||||||.+|.+.. . ...|. -++.+|+...... ... ...+.||=..|-..|..+
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~-~~~~~--aLeYty~~v~d~~--------~dd--~~rl~vw~L~g~~~~~~L 89 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--D-PKKGL--ALEYTYLDVKDED--------RDD--LARLNVWELDGDPSHSDL 89 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--C-CCCCc--ccceEEEeeccCc--------CCc--CceeeEEEcCCCcchHhH
Confidence 3459999999999999999997532 1 11222 2333443322110 001 123455544454555555
Q ss_pred hhhccC---ccc-ceEEeeccccC
Q 000735 874 RSRGSG---LCD-IAILVVDIMHG 893 (1324)
Q Consensus 874 r~rg~~---~aD-iaILVVDa~~G 893 (1324)
..-.+. ..+ ++|||+|.+..
T Consensus 90 Lk~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 90 LKFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred hcccCCcccccceEEEEEecCCCh
Confidence 544333 233 56777887653
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.8e-06 Score=85.76 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCcchhhhh--------hhccCcccceEEeeccccCCcHH--HHHHHHHHHhcCCcEEEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r--------~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~ll~~~~vP~IVaINKiDl 921 (1324)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4678999999964322221 12344589999999987643311 11122333333 4779999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.8e-05 Score=84.09 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=41.4
Q ss_pred cCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc
Q 000735 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI 987 (1324)
Q Consensus 908 ~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~ 987 (1324)
.++||+||++|||.+. .|.....+....|......|+.++..+| ..+|.+|++
T Consensus 221 lGi~vlVV~TK~D~~s------------~leke~eyrDehfdfiq~~lRkFCLr~G---------------aaLiyTSvK 273 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVS------------VLEKEHEYRDEHFDFIQSHLRKFCLRYG---------------AALIYTSVK 273 (473)
T ss_pred CCCcEEEEEeccchhh------------HhhhcchhhHHHHHHHHHHHHHHHHHcC---------------ceeEEeecc
Confidence 3679999999999742 2222122222233333333444444443 578999999
Q ss_pred cCCChhhHHHHHHH
Q 000735 988 SGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 988 tGeGI~eLl~~L~~ 1001 (1324)
..-||+-|...|+.
T Consensus 274 E~KNidllyKYivh 287 (473)
T KOG3905|consen 274 ETKNIDLLYKYIVH 287 (473)
T ss_pred cccchHHHHHHHHH
Confidence 99999877777764
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-05 Score=84.50 Aligned_cols=115 Identities=25% Similarity=0.325 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-----cccCcee--eeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-----GEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~-----ge~gGIT--q~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
.+|.|+|..|.|||||++.|....+.. +.+-.|+ .+|..... .+.+... . -.|++|||||+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th---vieE~gV------k---lkltviDTPGf 114 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH---VIEEKGV------K---LKLTVIDTPGF 114 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee---eeeecce------E---EEEEEecCCCc
Confidence 469999999999999999997655432 1221222 22222211 1111111 1 14999999997
Q ss_pred cchhhh--------------------------hhhccC--cccceEEeeccc-cCCcHHHHHHHHHHHhcCCcEEEEeec
Q 000735 868 ESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1324)
Q Consensus 868 e~F~~~--------------------------r~rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~ll~~~~vP~IVaINK 918 (1324)
-++.+. |.+.+. ..+++++.|..+ |.+.|-.+++|..|... +.+|-||-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEee
Confidence 665432 222222 246788888775 67889999999877653 557778899
Q ss_pred cccc
Q 000735 919 VDRL 922 (1324)
Q Consensus 919 iDl~ 922 (1324)
.|.+
T Consensus 194 aDtl 197 (336)
T KOG1547|consen 194 ADTL 197 (336)
T ss_pred cccc
Confidence 9976
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-06 Score=84.96 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
...|+|+|.+|+|||||+|+|++... ..+..+|.|.+...+.. ..++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-------------------MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-------------------CCCEEEEECcCC
Confidence 34688999999999999999998654 45666777765432211 135899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=96.70 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCEEEEeCCCCcchhhh------hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl~ 922 (1324)
..+.||||||...+... ....+..+|.+|||+|++.| ..+...+..... .++ .-|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 47999999996554221 12334568999999999886 233333333221 244 35789999963
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=89.82 Aligned_cols=115 Identities=25% Similarity=0.353 Sum_probs=73.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cCce------eeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGI------TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge-~gGI------Tq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
..+.++|..|.|||||+|.|..+.+.... ..+. |..|..+.+... +. ++ .-.||+|||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie---e~------g~---~l~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE---EN------GV---KLNLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec---CC------Ce---EEeeEEeccCCC
Confidence 67999999999999999999877544221 0110 111111111100 00 00 124999999997
Q ss_pred cchhhhh------------------------hh-ccC--cccceEEeeccc-cCCcHHHHHHHHHHHhcCCcEEEEeecc
Q 000735 868 ESFTNLR------------------------SR-GSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 868 e~F~~~r------------------------~r-g~~--~aDiaILVVDa~-~Gv~~QT~E~l~ll~~~~vP~IVaINKi 919 (1324)
-++.... .| .+. ..+++|+.|... ||+.|..++.+..+.. .+.+|-||-|.
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeecc
Confidence 6543210 01 122 468899999875 7899999999887755 48899999999
Q ss_pred ccc
Q 000735 920 DRL 922 (1324)
Q Consensus 920 Dl~ 922 (1324)
|.+
T Consensus 169 D~l 171 (366)
T KOG2655|consen 169 DTL 171 (366)
T ss_pred ccC
Confidence 986
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-05 Score=86.12 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
+...|+|+|.+|+|||||+++|++... ..+..+|+|.+.....+. .++.|+||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 345699999999999999999998654 566778888765544321 24899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=95.83 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccCceeee---eeee----------Eeccccccchhhhccc-ccccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQQ---IGAT----------YFPAENIRERTRELKA-NATLK 855 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~g---e~gGITq~---iga~----------~~~~e~i~~r~~~v~~-~~~~~ 855 (1324)
+..+|+|+|..|+|||||+..|...-...+ ...-|+.+ +|+. .+++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 346799999999999999988864211110 01111211 1110 000000000 000000 01234
Q ss_pred CCCEEEEeCCCCcchhhhh------hhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 856 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r------~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.+.+.||||||...+.... .+.. .....+|||+++.+... ..+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~D-l~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSD-LDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhH-HHHHHHHHHhh-CCeEEEEecCcCc
Confidence 5679999999965432221 1111 23456788887754322 22334443333 4677999999974
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.8e-05 Score=90.91 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=67.8
Q ss_pred CCCCcc-hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhH
Q 000735 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 864 TPGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~ 942 (1324)
-|||.. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|+... . .
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~----~------ 65 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------A----V------ 65 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------H----H------
Confidence 388854 344556778899999999999877665544444444 36899999999998520 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 943 ~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
+......+...+ +++|++||.+|.|+..|+..|..+++.
T Consensus 66 ---------~~~~~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 ---------TKQWLKYFEEKG---------------IKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---------HHHHHHHHHHcC---------------CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 001111111111 478999999999999999998776643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=93.49 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEeccccccchhhhccccccccCCCEEEEeCCCC----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH---- 867 (1324)
.+.|+|+|-+|+|||||+++|+...+....++..|++ .|..+++...+...+.-+.+...+....+.|||.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3569999999999999999999988766666666654 5666666533332222122222233456999999994
Q ss_pred ---cchhhhhhhccCcccceEEeecccc
Q 000735 868 ---ESFTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 868 ---e~F~~~r~rg~~~aDiaILVVDa~~ 892 (1324)
+-..|.....++.+|.++.||++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3356667777889999999999863
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=91.70 Aligned_cols=87 Identities=24% Similarity=0.247 Sum_probs=59.1
Q ss_pred hccCcccceEEeeccccC-CcH-HHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHH
Q 000735 876 RGSGLCDIAILVVDIMHG-LEP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~G-v~~-QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~ 953 (1324)
..+..+|.+|||+|+.+. +.+ +...+|..+...++|+|||+||+|++.. .. +.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~~-------------------~~ 139 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------TE-------------------QQ 139 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------HH-------------------HH
Confidence 357889999999999864 244 2244555556678999999999998621 00 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.....+...| +++|+|||.+|.||.+|+..|...
T Consensus 140 ~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 140 QWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 1112222222 478999999999999999888643
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.7e-05 Score=91.95 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
.+..+|+|+|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999864
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=92.38 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcchhhh----hhhc--cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.||||||....... ..+. ....+.++||+|++.+- ......+......++ -=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 57999999996543221 1111 23467889999986432 122344444444332 35679999975
|
|
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=73.62 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=64.8
Q ss_pred cccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc---ccc
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQG 1091 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a---a~g 1091 (1324)
.||+++|.++|.+.|.|++++|+|.+|+|+.||.|++++.+ . ...|+++++|+..+.. +..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~--------------~~~V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--V--------------TGEVKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--c--------------EEEEEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987653 2 2445566666655553 445
Q ss_pred eeeeccccccccCCCceEEeCCC
Q 000735 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1092 v~i~~~gL~~~~aG~~l~v~~~~ 1114 (1324)
+.|.+.+++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 88888888766566677777654
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=85.75 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCEEEEeCCCCcchhhh----hh--hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.||||||+..+... +. ......+-++||++++.+..... .........++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 46999999996554321 11 11225778999999988643222 333333444444 4459999975
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-05 Score=81.17 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
+.+.|+|+|++++|||||+++|++.. ...+..+|+|.+.....+. .+++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 45669999999999999999999765 3445556666665433221 35999999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.1e-05 Score=78.91 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=41.0
Q ss_pred hhhccCcccceEEeeccccCCcHHHHHHHHHHHhc--CCcEEEEeeccccc
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 922 (1324)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~--~vP~IVaINKiDl~ 922 (1324)
..+.+..||++|+|+|+.++...+......++... +.|+|+|+||+|++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 44577889999999999998877766777777665 89999999999985
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=6e-05 Score=87.56 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=55.3
Q ss_pred cCcccceEEeeccccCC-cHHH-HHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHH
Q 000735 878 SGLCDIAILVVDIMHGL-EPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1324)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT-~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I 955 (1324)
+..+|++|||+|+.+.. .... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 47899999999997642 2222 23445566788999999999998521 00 00111
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 956 ~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+...| ++++++||++|.||.+|+..|.
T Consensus 134 ~~~~~~~g---------------~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAIG---------------YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHCC---------------CeEEEEeCCCCccHHHHHhhcc
Confidence 11121111 4899999999999999887763
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.4e-05 Score=79.49 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
.|+|+|.+|+|||||+++|++... ......|.|.+...+.+ ...+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCc
Confidence 699999999999999999997654 23334445544322111 125899999996
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.2e-05 Score=88.31 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=68.7
Q ss_pred eCCCCcch-hhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHh
Q 000735 863 DTPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1324)
Q Consensus 863 DTPGHe~F-~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~ 941 (1324)
--|||..= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... .
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~--------- 67 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E--------- 67 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H---------
Confidence 35898553 334556788999999999998877655544444443 7899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHHHHH
Q 000735 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 942 ~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
.+......+...+ ++++++||.+|.|+..|+..|..+++.
T Consensus 68 ---------~~~~~~~~~~~~~---------------~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 ---------VTKKWIEYFEEQG---------------IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---------HHHHHHHHHHHcC---------------CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0011111121111 478999999999999999988877654
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.4e-05 Score=84.43 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--ccccccc-CceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchh-
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t--~v~~ge~-gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~- 871 (1324)
+|+|+|..++|||||||+|++. .+..+.. ...|..|..+..++.. .....|+||||||..+..
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5899999999999999999988 5544322 3344444444444321 012459999999964431
Q ss_pred -----hhhhhccC--cccceEEeecccc
Q 000735 872 -----NLRSRGSG--LCDIAILVVDIMH 892 (1324)
Q Consensus 872 -----~~r~rg~~--~aDiaILVVDa~~ 892 (1324)
.++..++. .+|++|+.++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 12233333 3898888887653
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.8e-05 Score=88.41 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=51.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-----------CcHHHHHHHHHHHh----cCCcEEEEeeccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~ll~~----~~vP~IVaINKiD 920 (1324)
...+.+||++|+..+...|..++..++++|+|||.++- -...++..+..+.. .++|+||++||+|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 34588999999999999999999999999999999752 12233333333322 4689999999999
Q ss_pred cc
Q 000735 921 RL 922 (1324)
Q Consensus 921 l~ 922 (1324)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 74
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.6e-05 Score=83.94 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
+++.+++|+|+.|+|||||+|.|+...
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999999763
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.8e-05 Score=82.91 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV---------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v---------~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTP 865 (1324)
..|+|+|.+|+|||||+++|++... ..+..+|+|.++-.+.+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4599999999999999999997543 223444555554333221 148999999
Q ss_pred CC
Q 000735 866 GH 867 (1324)
Q Consensus 866 GH 867 (1324)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.3e-05 Score=78.65 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCCcchh----hhhhhc--cCcccceEEeeccccCCcHHHHHHH-HHHHhcCCcEEEEeeccccc
Q 000735 856 VPGLLVIDTPGHESFT----NLRSRG--SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~----~~r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~~~vP~IVaINKiDl~ 922 (1324)
...+.||||||...+. ...... +..+|.+||||++..+. .+...+ .++...+ ..-|++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 4569999999986432 111111 23489999999986542 333333 3334445 366788999975
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=69.46 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=59.8
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccC-CceeEEeeeccCCCCCceeeecceeecccccc---cccce
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGI 1092 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~-g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~---aa~gv 1092 (1324)
|+++|.++|.+.|.|++++|+|.+|+|++||.+++++.. |. ....+|+++++|+..+. ++..+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-------------~~~~~V~sI~~~~~~~~~a~aGd~v 67 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-------------FRPVTVKSIHRNRSPVRVVRAGQSA 67 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-------------EeEEEEEEEEECCeECCEECCCCEE
Confidence 467899999999999999999999999999999987653 21 12345566666666555 34457
Q ss_pred eeeccccccccCCCceEEe
Q 000735 1093 KITAQGLEHAIAGTGLYVV 1111 (1324)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v~ 1111 (1324)
.+.+++++......+++++
T Consensus 68 ~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 68 SLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEcCCCHHHcCCccEEe
Confidence 7888887665555555554
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=89.71 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCcee--eeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc--
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGIT--q~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~-- 869 (1324)
..|+|+|.+++|||||+++|++... .....+..| ..+|...++.......+..+. ........+.|+|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccch
Confidence 3589999999999999999998877 555555544 445555544322111111111 1112233689999999432
Q ss_pred -----hhhhhhhccCcccceEEeecccc
Q 000735 870 -----FTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~ 892 (1324)
+.+.....++.||++++||++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 55566677889999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=6e-05 Score=87.06 Aligned_cols=57 Identities=28% Similarity=0.487 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe 868 (1324)
+...|+|+|.+|+|||||+++|++..+ ..+..+|+|.++....+ . .++.||||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G-----------------KGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C-----------------CcEEEEECCCcC
Confidence 345699999999999999999998764 56777888887643222 1 358999999963
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.3e-05 Score=89.73 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCcchhh-hhh-----hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~-~r~-----rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl 921 (1324)
.+.+.||||||...+.. ++. ..+..++.++||+|++.| ......+..... .++ .-|++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 45799999999543311 111 112357788999998754 223333333222 232 3577899995
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=87.24 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-cccccc-Cceeee---eeee----------EeccccccchhhhccccccccC
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEA-GGITQQ---IGAT----------YFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~-gGITq~---iga~----------~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
.++.+|+|+|+.|+||||++.+|.... ...|.. .-++.+ +++. .++...... ...+.....-..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDG 299 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCC
Confidence 345679999999999999999986422 111110 001111 1100 000000000 000000001124
Q ss_pred CCEEEEeCCCCcchhh----hhh---hcc--CcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTN----LRS---RGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~----~r~---rg~--~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.||||||+..... .+. +.. ....-.+||+|++.+.. +....+......+ +-=+++||+|-.
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 5799999999754311 111 111 22456889999987632 2233333333333 345679999974
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00022 Score=86.18 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c-ccCc-eeee---eeee----------EeccccccchhhhccccccccC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQQ---IGAT----------YFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-g-e~gG-ITq~---iga~----------~~~~e~i~~r~~~v~~~~~~~~ 856 (1324)
...+|+|+|..|+|||||+..|.+..+.. + ...+ |+.+ +|+. .++.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44579999999999999999886532110 0 1111 1111 1110 0010000000000000112345
Q ss_pred CCEEEEeCCCCcchhhh----hh--hccCcccceEEeeccccCCcHHHHHHH-HHHHhcCCcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.||||+|....... .. .......-.+||++++.+ .+++..+ ......+ +-=|++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 67999999995543221 11 122334567899998753 3444332 2222222 235679999975
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=83.06 Aligned_cols=127 Identities=19% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeee---eeee----------Eeccccccchhhhcccc----ccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQ---IGAT----------YFPAENIRERTRELKAN----ATL 854 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~g-e~gGITq~---iga~----------~~~~e~i~~r~~~v~~~----~~~ 854 (1324)
+.++|+|+|.+|+|||||+..|.......+ ..+-|+.+ ++++ .++..... ....+... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEE 152 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHhc
Confidence 457899999999999999998864321111 11112211 1110 00000000 00000000 011
Q ss_pred cCCCEEEEeCCCCcchhhh----hh--hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 855 KVPGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
....+.||||||+..+... .. .....+|.++||++++.+- .+....+......+ +-=|++||+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 2357999999997643221 11 1233467789999986532 12223334333332 335679999975
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.7e-05 Score=85.69 Aligned_cols=56 Identities=29% Similarity=0.476 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
+...|+|+|.+|+|||||+++|++.. ...+..+|+|..+....+. .+++||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-------------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-------------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-------------------CCEEEEECCCc
Confidence 34669999999999999999999765 3456677777765432221 25899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.4e-05 Score=91.86 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
.|.|+|.+|+|||||+++|++.. +..+..+|+|.++..+.+ ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-------------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-------------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-------------------CCCCEEEECCCCCC
Confidence 59999999999999999998743 233445666655432221 13478999999643
Q ss_pred hhhh---hh-------hccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 870 FTNL---RS-------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 870 F~~~---r~-------rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
...+ .. .-.......+++++..+.+....+..|..+...+..|++++++.+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 3211 11 11123455667777665444333333444444567788888888876
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=88.34 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhhhhh------hccCcccceEEeeccccCCcHHHHHHHHHHH-hcCCcEEEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~------rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~-~~~vP~IVaINKiDl 921 (1324)
.+.+.||||||...+..... .....+|.++||+|++.| ......+.... ..++ .=|++||+|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 35699999999543321111 123357889999999764 23333333333 2232 3567999995
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=93.04 Aligned_cols=126 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cCce---eeeeeeeE----------eccccccchhhhccc-cccccC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE--AGGI---TQQIGATY----------FPAENIRERTRELKA-NATLKV 856 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge--~gGI---Tq~iga~~----------~~~e~i~~r~~~v~~-~~~~~~ 856 (1324)
.-+|+|||+.|+||||++..|..... ..|. ..-| |..+|+.. +++..... ...+.. -..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhcC
Confidence 45899999999999999999975432 1111 1111 12222210 00000000 000000 012334
Q ss_pred CCEEEEeCCCCcchh----hhhh--hccCcccceEEeeccccCCcHHHHH-HHHHHHhc-CC-cEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFT----NLRS--RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~----~~r~--rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~~-~v-P~IVaINKiDl~ 922 (1324)
..+.||||||..... .... ......+-.+||+|++.+ .+++. ++...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 579999999933221 1111 123346678999999853 33332 22222221 11 234679999964
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00023 Score=86.54 Aligned_cols=65 Identities=15% Similarity=0.029 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCcchh----hhhhhc---cCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 856 VPGLLVIDTPGHESFT----NLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~----~~r~rg---~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
...+.||||||+..+. ...... .....-++||++++.+. ......+..+...++ -=|++||+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 4679999999975542 111111 22345678888886532 122233344443332 35889999974
|
|
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=68.85 Aligned_cols=83 Identities=19% Similarity=0.391 Sum_probs=61.6
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc---ccee
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIK 1093 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa---~gv~ 1093 (1324)
|+++|.++|.+.|.|++++|+|.+|+|+.||.|.++|.... ....|+++++|+..+..| ..+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~--------------~~~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET--------------LKTTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC--------------ceEEEEEEEECCcCCCEECCCCEEE
Confidence 46789999999999999999999999999999988764211 234566667777666654 4588
Q ss_pred eeccccccccCCCceEEeCC
Q 000735 1094 ITAQGLEHAIAGTGLYVVGP 1113 (1324)
Q Consensus 1094 i~~~gL~~~~aG~~l~v~~~ 1113 (1324)
+.+.+++......+++++.+
T Consensus 67 l~l~~~~~~~v~rG~vl~~~ 86 (87)
T cd03697 67 VLLRGVKREDVERGMVLAKP 86 (87)
T ss_pred EEECCCCHHHcCCccEEecC
Confidence 88888876555566666543
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.1e-05 Score=77.39 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiD 920 (1324)
.+.+.||||||.... ....+..+|.+|+|+...-+ .....+.. -....--+|+|||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~---D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAG---DDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCch---hHHHHhhh-hHhhhcCEEEEeCCC
Confidence 467999999996432 23477889999999987622 12222211 223345688999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=81.09 Aligned_cols=126 Identities=25% Similarity=0.226 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeeee-eeeEeccccccchhhhccc--------------ccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRERTRELKA--------------NAT 853 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~------v~~ge~gGITq~i-ga~~~~~e~i~~r~~~v~~--------------~~~ 853 (1324)
|+.+|-|.-|+||||||++|+... |-.+++|-|..+- .........+.+.+..+-+ ...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 678999999999999999998643 2234445444441 1111111111111111100 001
Q ss_pred ccCCCEEEEeCCCCcchhhhh--------hhccCcccceEEeeccccCCcHHH---HHHHHHHHhcCCcEEEEeeccccc
Q 000735 854 LKVPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 854 ~~~~~I~IIDTPGHe~F~~~r--------~rg~~~aDiaILVVDa~~Gv~~QT---~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
...+..+||-|-|...-.... .+..-..|.+|-|||+.+...... .....++.. -=+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEecccCC
Confidence 223679999999965542221 122334688999999998655433 222233333 358999999997
Q ss_pred c
Q 000735 923 Y 923 (1324)
Q Consensus 923 ~ 923 (1324)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 3
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0001 Score=78.45 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
+.+.|+|+|.+++|||||+++|++.++ ..+...|+|.+...+.+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 346799999999999999999998765 333445555554332221 35899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00038 Score=82.56 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=58.2
Q ss_pred cCcccceEEeeccccCCcHHHHHHH-HHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHH
Q 000735 878 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1324)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E~l-~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~ 956 (1324)
+..+|.++||++....+.+..+..| ..+...++|+|||+||+|++..+ . .. .+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~---------------~~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RA---------------FVNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HH---------------HHHHHH
Confidence 3568999999998776666555544 34556789999999999996310 0 00 001111
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHH
Q 000735 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+...| +++|+|||++|.||.+|+..|..
T Consensus 176 ~~y~~~g---------------~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNIG---------------YRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhCC---------------CeEEEEeCCCCcCHHHHHHHHhh
Confidence 1121111 58999999999999999998864
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0004 Score=83.26 Aligned_cols=128 Identities=20% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-----cccCceeeee---eee----------Eeccccccchhhhccc-cc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-----GEAGGITQQI---GAT----------YFPAENIRERTRELKA-NA 852 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v~~-----ge~gGITq~i---ga~----------~~~~e~i~~r~~~v~~-~~ 852 (1324)
.++.+|+++|+.|+||||++..|...-... ....-||.+. ++. .+|+..... ...+.. -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~-~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES-FKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-HHHHHHHHH
Confidence 345689999999999999998886321111 0111111111 100 000000000 000000 01
Q ss_pred cccCCCEEEEeCCCCcchhhh----hhhccCc--cc-ceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 853 TLKVPGLLVIDTPGHESFTNL----RSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~----r~rg~~~--aD-iaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.+....+.||||||+..+..+ ....+.. ++ -.+||+|++.+.... .+.+......+ +-=|++||+|-.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 234567999999996543221 1112221 23 588999998873222 23333332222 345789999974
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.1e-05 Score=79.54 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=62.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeee-------------eEeccc--cccc-----hhhhccccccc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA-------------TYFPAE--NIRE-----RTRELKANATL 854 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga-------------~~~~~e--~i~~-----r~~~v~~~~~~ 854 (1324)
|+++|.|..||||||||++|+.........+=|..++|. ...... .+.. ....+..-...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 789999999999999999998411111111111112221 111111 0000 00000000111
Q ss_pred c--CCCEEEEeCCCCcchhhhh-----hhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 855 K--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 855 ~--~~~I~IIDTPGHe~F~~~r-----~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
. .+.+.||-|.|......+. ....-..+.+|.|||+.+-....+...+ +..+...-=+|++||+|++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~-~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL-LREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH-HHHHHCT-SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh-hhhcchhcCEEEEeccccC
Confidence 2 4689999999976665551 1112346889999999653212222111 1222333458999999986
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=87.10 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
..+|+|||..|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 458999999999999999999753
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=84.25 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccccc-chhhhccccccccCCCEEEEeCCCCc----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGHE---- 868 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~-~r~~~v~~~~~~~~~~I~IIDTPGHe---- 868 (1324)
++.++|+|.+++|||||++.|+..+...+.++..|++.....++....+ ..+..+.....-..-.|+|+|++|..
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 4569999999999999999999999888888888888766555443222 11111111111111249999999942
Q ss_pred ---chhhhhhhccCcccceEEeecccc
Q 000735 869 ---SFTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 869 ---~F~~~r~rg~~~aDiaILVVDa~~ 892 (1324)
-..|-....++.||.++-||++..
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 245666677889999999998854
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=84.76 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=58.2
Q ss_pred cCcccceEEeeccccCCcHHHHH-HHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHH
Q 000735 878 SGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1324)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E-~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~ 956 (1324)
+..+|.++||+++...+.+..++ +|..+...++|.|||+||+|++.. .. ...
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--------~~-------------------~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--------AE-------------------EKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--------HH-------------------HHH
Confidence 46789999999998788875554 556667889999999999999621 00 001
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHH
Q 000735 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1324)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L 999 (1324)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1111111 13589999999999998887776
|
|
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00036 Score=65.69 Aligned_cols=78 Identities=14% Similarity=0.321 Sum_probs=56.4
Q ss_pred ccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccc---ccce
Q 000735 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGI 1092 (1324)
Q Consensus 1016 ~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~a---a~gv 1092 (1324)
||+++|.++|.+. .|++++|+|.+|+|++||.|.+++++ .. ..|+++++|+..+.. +..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ES--------------VEVKSIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cE--------------EEEEEEEECCeECCEECCCCEE
Confidence 4788999999988 99999999999999999999987654 22 345556666655543 3447
Q ss_pred eeeccccccccCCCceEE
Q 000735 1093 KITAQGLEHAIAGTGLYV 1110 (1324)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1324)
.+.+.+++......+.++
T Consensus 64 ~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 64 RLKLKGIDEEDISPGDVL 81 (83)
T ss_pred EEEECCCCHHHCCCCCEE
Confidence 777777765444444444
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00029 Score=84.07 Aligned_cols=102 Identities=25% Similarity=0.263 Sum_probs=65.1
Q ss_pred CcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHH
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ 946 (1324)
.++|..++......++++|+|||+.+-......+...++ .+.|+|+|+||+|++..+ .. ...+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~-~~~~~-------- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VN-LSKIK-------- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CC-HHHHH--------
Confidence 567888888888899999999999764432222222222 268999999999997311 00 00000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 947 ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0111223334432 1258899999999999999988643
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=86.44 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
...+++|+|++|+|||||||+|+...
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 33468999999999999999998643
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0007 Score=72.29 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=51.9
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccc
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
..+.+.|||||+.... .....+..+|.+|+|+.....-...+...+.++...++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4568999999976433 33445678999999999886555567777888888899999999999963
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00061 Score=92.55 Aligned_cols=118 Identities=23% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc--Cceeeeeeee-EeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGAT-YFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~--gGITq~iga~-~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
.+.-|-.+|||..|+||||||.+.- -.+.-... ..-+..++.+ ++.+ |-.....||||+|.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~sg-l~~pl~~~~~~~~~~~~~~t~~c~w---------------wf~~~avliDtaG~ 171 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNSG-LKFPLAERLGAAALRGVGGTRNCDW---------------WFTDEAVLIDTAGR 171 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhCC-CCCcCchhhccccccCCCCCcccce---------------EecCCEEEEcCCCc
Confidence 3456779999999999999999872 22211110 0001111111 0000 11235789999992
Q ss_pred c---------------chhhhh--hhccCcccceEEeeccccCCc--HHH-HHH-------HHHH---HhcCCcEEEEee
Q 000735 868 E---------------SFTNLR--SRGSGLCDIAILVVDIMHGLE--PQT-IES-------LNLL---KMRNTEFIVALN 917 (1324)
Q Consensus 868 e---------------~F~~~r--~rg~~~aDiaILVVDa~~Gv~--~QT-~E~-------l~ll---~~~~vP~IVaIN 917 (1324)
. .|..+. .|--+..|+|||+||+.+=+. ++. ..+ |..+ ....+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1 133332 234466899999999976432 111 111 1111 224689999999
Q ss_pred ccccccC
Q 000735 918 KVDRLYG 924 (1324)
Q Consensus 918 KiDl~~~ 924 (1324)
|||++.+
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999865
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00032 Score=81.14 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=56.5
Q ss_pred cCcccceEEeeccccCC-cHHHHH-HHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHH
Q 000735 878 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1324)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT~E-~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I 955 (1324)
+..+|++|||+|+.... .+..++ ++..+...++|+|||+||+|+... .. . ...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~----------------~~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---E----------------ELE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---H----------------HHH
Confidence 67799999999998876 544443 445566778999999999998621 00 0 000
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 956 ~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
...+... .++++++||.+|.||.+|+..|.
T Consensus 131 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALAL---------------GYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhC---------------CCeEEEEECCCCccHHHHHhhhc
Confidence 0001111 25899999999999998887764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=86.19 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
.+++|+|.+|+|||||||+|+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhcccc
Confidence 358999999999999999999653
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=84.00 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
.+...|.|+|-+|+|||||+|+|++... ..+..+|+|.++-...+. .++.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 3445699999999999999999998764 567778888776433322 35999999994
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00077 Score=80.09 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeee---eeeeE-e-ccccccchhhhc-c-------ccccccCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQ---IGATY-F-PAENIRERTREL-K-------ANATLKVP 857 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v---~~ge~gGITq~---iga~~-~-~~e~i~~r~~~v-~-------~~~~~~~~ 857 (1324)
..+|++||++|+||||.|-.|-..-+ .....+-||.+ ||+.. + .|..+.+....+ . .-..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45799999999999999988854322 11122334433 23210 0 000000000000 0 01124456
Q ss_pred CEEEEeCCCCcchhhhhh----hccC--cccceEEeeccccCCcHHHH-HHHHHHHhcCCcEEEEeeccccc
Q 000735 858 GLLVIDTPGHESFTNLRS----RGSG--LCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~----rg~~--~aDiaILVVDa~~Gv~~QT~-E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.+.||||.|+..+-.+.. ..+. ...-+.||++++. ...+. +.+......++- =+++||+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 899999999755433221 2222 3345667787754 22222 333444443332 3568999975
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00083 Score=79.56 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
+-|+.+|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4588999999999999999999853
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.001 Score=62.54 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=54.3
Q ss_pred ccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc---cccce
Q 000735 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGI 1092 (1324)
Q Consensus 1016 ~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~---aa~gv 1092 (1324)
||+++|.++|... |++++|+|.+|+|+.||.|.+++++ .. ..|+++++|+..+. ++..+
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK--TQ--------------VEVLSIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC--cE--------------EEEEEEEECCEECCEECCCCEE
Confidence 4788899988653 8999999999999999999987654 22 34556666665544 34457
Q ss_pred eeeccccccccCCCceEE
Q 000735 1093 KITAQGLEHAIAGTGLYV 1110 (1324)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1324)
.+.+.+++......+.++
T Consensus 63 ~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 63 RLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEecCCCHHHCCCCCEE
Confidence 777777765444445444
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00055 Score=71.45 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=36.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
..|+++|.+++|||||+++|++.... .+...|+|.++..... ...+.||||||.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 45899999999999999999965432 2334444433221111 125899999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00091 Score=78.48 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeeee---eeeEeccccccchh--hhcccc-------c--
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI---GATYFPAENIRERT--RELKAN-------A-- 852 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~------v~~ge~gGITq~i---ga~~~~~e~i~~r~--~~v~~~-------~-- 852 (1324)
+-|+.+|.|..|+||||||++|+... +-..+.|.+..+- +.....+..+.+-| ..+..+ .
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45899999999999999999998532 1122333221110 00000000000000 000000 0
Q ss_pred cc----cCCCEEEEeCCCCcchhhhhhhc--------cCcccceEEeeccccCCcHHH--HHHHHHHHhcCCcEEEEeec
Q 000735 853 TL----KVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNK 918 (1324)
Q Consensus 853 ~~----~~~~I~IIDTPGHe~F~~~r~rg--------~~~aDiaILVVDa~~Gv~~QT--~E~l~ll~~~~vP~IVaINK 918 (1324)
.. ..+...||-|.|..+-..+.... .-..+.+|.|||+.+...... .....++. .-=+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEEec
Confidence 00 13678999999987654433221 123588999999987543211 11122222 335899999
Q ss_pred cccc
Q 000735 919 VDRL 922 (1324)
Q Consensus 919 iDl~ 922 (1324)
+|+.
T Consensus 160 ~Dl~ 163 (318)
T PRK11537 160 TDVA 163 (318)
T ss_pred cccC
Confidence 9986
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00081 Score=83.11 Aligned_cols=130 Identities=21% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeee-------ee-eEecccc----ccchhhh-----ccc-----
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------GA-TYFPAEN----IRERTRE-----LKA----- 850 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~i-------ga-~~~~~e~----i~~r~~~-----v~~----- 850 (1324)
++-.|+|.|.+++||||+++++++..+..+..+.+|.-. |. .+.-++. +.-.++. +..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 455699999999999999999997665444333333110 00 0000000 0000000 000
Q ss_pred -----ccccc-------CCCEEEEeCCCCcc---hhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEEEE
Q 000735 851 -----NATLK-------VPGLLVIDTPGHES---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915 (1324)
Q Consensus 851 -----~~~~~-------~~~I~IIDTPGHe~---F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVa 915 (1324)
.+.|+ -..|.|||.||..- ++.......-.+|++|||+.+-.-++..-..++......+-.|+|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 00011 12589999999533 3444444455689999999997766655555555554444446677
Q ss_pred eeccccc
Q 000735 916 LNKVDRL 922 (1324)
Q Consensus 916 INKiDl~ 922 (1324)
.||.|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7888975
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00034 Score=80.38 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
.+..-+.+++|+.|+|||||||+|..
T Consensus 161 ~l~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 161 LLAGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred HhcCCeEEEECCCCCcHHHHHHhhCc
Confidence 35566799999999999999999985
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=61.66 Aligned_cols=69 Identities=20% Similarity=0.417 Sum_probs=51.8
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc---ccccee
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIK 1093 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~---aa~gv~ 1093 (1324)
|+++|.++|.+.|.|+++.|.|.+|+|+.|+.+++.++. .. ..|+++++++..+. ++..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~--------------~~V~sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EE--------------TRVRSIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ce--------------EEEEEEEECCcCcCEEcCCCEEE
Confidence 568899999999999999999999999999999987643 23 34555566665544 444577
Q ss_pred eecccccc
Q 000735 1094 ITAQGLEH 1101 (1324)
Q Consensus 1094 i~~~gL~~ 1101 (1324)
|.+.++..
T Consensus 65 i~l~~~~~ 72 (83)
T cd03696 65 LNLTGVDA 72 (83)
T ss_pred EEEcCCCH
Confidence 77777643
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00042 Score=78.41 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
...+++|+|++|+||||||++|+...
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 33579999999999999999998643
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0051 Score=73.87 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCEEEEeCCCCcc-------------hhhhhhhccCcccceEEeeccccCCc----HHHHHHHHHHHhcCCcEEEEeecc
Q 000735 857 PGLLVIDTPGHES-------------FTNLRSRGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 857 ~~I~IIDTPGHe~-------------F~~~r~rg~~~aDiaILVVDa~~Gv~----~QT~E~l~ll~~~~vP~IVaINKi 919 (1324)
+.+.++|.||.-+ ...|...++..++.+||||- +|.. .........+.-.+...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3588999999422 34456678889999999973 2321 112223344555788899999999
Q ss_pred ccc
Q 000735 920 DRL 922 (1324)
Q Consensus 920 Dl~ 922 (1324)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 986
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=66.82 Aligned_cols=106 Identities=18% Similarity=0.057 Sum_probs=63.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
++.+-|-.|+||||+.-.|...-... |.+.- .+..+... . .+ .+.+.|||||++... ...
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~----~~~~~----~vd~D~~~---~------~~-~yd~VIiD~p~~~~~--~~~ 61 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKL----GKRVL----LLDADLGL---A------NL-DYDYIIIDTGAGISD--NVL 61 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEE----EEECCCCC---C------CC-CCCEEEEECCCCCCH--HHH
Confidence 34556688999999987775332111 11100 11111000 0 01 156999999986443 334
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHHHHhc--CCcEEEEeecccc
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 921 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~--~vP~IVaINKiDl 921 (1324)
..+..||.+|+|++.+..-...+...+..+... ..++.+++|+++.
T Consensus 62 ~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 62 DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 568889999999998754444455566555432 4578899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=72.67 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
.|.+||..|+|||+|=..+-...++ +....|-|+++-...+.+ +.+--+++||+.|++.|....
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf---------------lGnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF---------------LGNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh---------------hhhheeehhccCCcHHHHHHH
Confidence 4999999999999986665532211 112233344432222211 111238899999999886543
Q ss_pred -----hhccCcccceEEeeccccCCcHHH----HHHHHHHHhc--CCcEEEEeeccccc
Q 000735 875 -----SRGSGLCDIAILVVDIMHGLEPQT----IESLNLLKMR--NTEFIVALNKVDRL 922 (1324)
Q Consensus 875 -----~rg~~~aDiaILVVDa~~Gv~~QT----~E~l~ll~~~--~vP~IVaINKiDl~ 922 (1324)
...++..+++|+|+|+...-.... ...|..+... ...+++.+.|+|++
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 346788999999999976433333 3334444432 35689999999997
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=70.77 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred CEEEEeCCCCcc-h-----hhhhhhccCccc---ceEEeeccccCC-----cHHHHHHHHHHHhcCCcEEEEeecccccc
Q 000735 858 GLLVIDTPGHES-F-----TNLRSRGSGLCD---IAILVVDIMHGL-----EPQTIESLNLLKMRNTEFIVALNKVDRLY 923 (1324)
Q Consensus 858 ~I~IIDTPGHe~-F-----~~~r~rg~~~aD---iaILVVDa~~Gv-----~~QT~E~l~ll~~~~vP~IVaINKiDl~~ 923 (1324)
.++|+|+||+-. | .....+.+..-+ ++|+++|+.--+ -....-.+.......+|.|-+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 599999999533 2 222333333322 356666653211 11222334444567899999999999984
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00073 Score=78.60 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 344579999999999999999998653
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00071 Score=78.29 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
+++.+++|+|++|+|||||++.|++..
T Consensus 159 L~~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 159 LKGKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred hccceEEEECCCCCCHHHHHHHHhchh
Confidence 344679999999999999999998754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=78.06 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccC-----------CcHHHHHHHHHHHh----cCCcEEEEeeccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~ll~~----~~vP~IVaINKiD 920 (1324)
...+.|||++|+..+...|..++..++++|+|||+++- -...++..+..+.. .++|+||++||+|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 34589999999999999999999999999999999852 12334444444332 4689999999999
Q ss_pred cccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHH
Q 000735 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1324)
Q Consensus 921 l~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~ 1000 (1324)
+... .....++...+.+..-. ..+......|...|....-+ ..+..+.++.|+|..-.+|..+++.+.
T Consensus 263 ~~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 263 LFEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hHHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHH
Confidence 7520 00000111100000000 11122233344444332110 023457778899999999988887765
Q ss_pred HHH
Q 000735 1001 QWT 1003 (1324)
Q Consensus 1001 ~l~ 1003 (1324)
..+
T Consensus 331 ~~I 333 (342)
T smart00275 331 DII 333 (342)
T ss_pred HHH
Confidence 433
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00038 Score=83.66 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=47.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC--cchh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--ESFT 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH--e~F~ 871 (1324)
.+|++||.+|+||||+||.|.+.. |....++|-|.|+-+.++. +.+.|.||||. -+|.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 569999999999999999999865 5567788888888766654 45899999994 4554
Q ss_pred h
Q 000735 872 N 872 (1324)
Q Consensus 872 ~ 872 (1324)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 4
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=68.97 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=46.5
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCc-EEEEeecccc
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVaINKiDl 921 (1324)
.+.||||||...+. ....+..+|.+|+|++....-...+...+.++...+.+ +.|++|+++.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 69999999865543 34457899999999998765555666666666666654 6789999985
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=70.91 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh-
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~- 873 (1324)
|.|.+|||--+||||+.....+.. +..+ |.-+-. +..+... +..-....+.+||.||+.+|..-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkM-sPne----TlflES----Tski~~d------~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKM-SPNE----TLFLES----TSKITRD------HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeecc-CCCc----eeEeec----cCcccHh------hhhhhhcceEEeecCCccccCCCc
Confidence 459999999999999877654322 1111 100000 0000000 00001134889999999887432
Q ss_pred --hhhccCcccceEEeeccccCC-cHHHHHHHHHHHhc----CCcEEEEeeccccc
Q 000735 874 --RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMR----NTEFIVALNKVDRL 922 (1324)
Q Consensus 874 --r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~----~vP~IVaINKiDl~ 922 (1324)
..+-++.|-.+|+|||+.+.. .+-|.-++-..+++ ++.|=|+|.|+|-+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 345577899999999997653 34555566666654 46788999999976
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00078 Score=80.56 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe 868 (1324)
.|.|+|.+|+|||||+|+|+... +..+..+|+|.++-.+.+ . .+..|+||||..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-----------------DGSFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-----------------CCcEEEECCCcc
Confidence 59999999999999999998542 123445555554322211 1 246899999964
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0015 Score=64.46 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|+++|+.++|||+|+.++....+... ..+ ..++ |..+..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 589999999999999999965433210 000 0011 333334
Q ss_pred hccCcccceEEeeccccCCcHHH--HHHHHHHHhcCCcEEEEeeccccc
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT--~E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
...+.++.+++|.+......... ...+.......+|++++.||+|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhH
Confidence 45566788888777665221111 111111122347889999999973
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=72.41 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccC----ceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcc
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~g----GITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~ 869 (1324)
+.+|.-+|..|.|||||++.|.++++...... ++-.+...+.+.-.+++ -.++|+||-|+-+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tvGfGD 107 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTVGFGD 107 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeeccccc
Confidence 45677889999999999999999987654322 11111111111111111 2499999999533
Q ss_pred -------h-----------hh-----------hhhhccCcccceEEeeccc-cCCcHHHHHHHHHHHhcCCcEEEEeecc
Q 000735 870 -------F-----------TN-----------LRSRGSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 870 -------F-----------~~-----------~r~rg~~~aDiaILVVDa~-~Gv~~QT~E~l~ll~~~~vP~IVaINKi 919 (1324)
| -+ +....-+..+++++.|..+ ||+....+-.+..|. .++.||-+|-|.
T Consensus 108 QinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKa 186 (406)
T KOG3859|consen 108 QINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKA 186 (406)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHh
Confidence 1 11 1112223467788888765 555544444443332 346788888999
Q ss_pred ccc
Q 000735 920 DRL 922 (1324)
Q Consensus 920 Dl~ 922 (1324)
|.+
T Consensus 187 Dti 189 (406)
T KOG3859|consen 187 DTI 189 (406)
T ss_pred hhh
Confidence 975
|
|
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=58.59 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeeccccccccc---cee
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ---GIK 1093 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~---gv~ 1093 (1324)
|+++|.++|.+.+.|+.++|.|.+|+|+.||+|.+++.+ . ...|+++++|+..+..+. .+.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v~ 64 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--K--------------TSRVKSIETFDGELDEAGAGESVT 64 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--C--------------eEEEEEEEECCcEeCEEcCCCEEE
Confidence 578899999888888889999999999999999987653 2 234566667776665442 355
Q ss_pred eeccc
Q 000735 1094 ITAQG 1098 (1324)
Q Consensus 1094 i~~~g 1098 (1324)
|.+.+
T Consensus 65 l~l~~ 69 (81)
T cd03695 65 LTLED 69 (81)
T ss_pred EEECC
Confidence 55543
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=76.93 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC----cc-----c--cccc------CceeeeeeeeEeccccccchhhhc-cc---c
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT----NV-----Q--EGEA------GGITQQIGATYFPAENIRERTREL-KA---N 851 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t----~v-----~--~ge~------gGITq~iga~~~~~e~i~~r~~~v-~~---~ 851 (1324)
++-+|.++|--|+||||.+..|-.. +. . .++. .....+++..+|+...-. ....+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~-~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK-DPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC-CHHHHHHHHHHH
Confidence 3456899999999999998887421 10 0 1111 112345555555542111 01111 00 1
Q ss_pred ccccCCCEEEEeCCCCcch-----hhh-hhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcE-EEEeecccc
Q 000735 852 ATLKVPGLLVIDTPGHESF-----TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1324)
Q Consensus 852 ~~~~~~~I~IIDTPGHe~F-----~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~-IVaINKiDl 921 (1324)
.....+.+.||||.|-... ..+ .......+|=+|||||++.|- ............+++ =|+|||+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccC
Confidence 1223357999999993222 112 123456689999999999863 222221122223454 478999995
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0017 Score=71.83 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCEEEEeCC-CCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcC-CcEEEEeecccc
Q 000735 857 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 921 (1324)
Q Consensus 857 ~~I~IIDTP-GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~-vP~IVaINKiDl 921 (1324)
..+.||||= |.+.|..- ....||++|+|||.+.--.......-.+....+ .+|.|++||+|-
T Consensus 134 ~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 568899994 66666532 346799999999987533233334445666788 799999999995
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=60.82 Aligned_cols=59 Identities=31% Similarity=0.416 Sum_probs=47.5
Q ss_pred cccC-CCCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1264 VFNK-KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1264 vf~~-~~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|+. ..+.|+.-+|..|+|++|++|.+.... ..++|.||+.++.+++++..|+.|+|.|
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l 67 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNL 67 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEE
Confidence 5542 233455559999999999999884332 3799999999999999999999999976
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0018 Score=74.18 Aligned_cols=57 Identities=25% Similarity=0.480 Sum_probs=42.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH 867 (1324)
+.|-|+|-+|+|||||+|+++... ...|..+|+|+.++..+.-.+ .+.+.+|||||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~----------------rp~vy~iDTPGi 206 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH----------------RPPVYLIDTPGI 206 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc----------------CCceEEecCCCc
Confidence 459999999999999999998543 345667888888765332111 255999999994
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0051 Score=65.28 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeeccccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl~ 922 (1324)
.+.+.|||||+...-.......+..+|.+|+|+.....-...+...+..+...+++++ +++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 4679999999974322121111367899999998876666778888888988888764 789999853
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0045 Score=74.13 Aligned_cols=99 Identities=28% Similarity=0.357 Sum_probs=58.0
Q ss_pred chhhhhhhccCccc-ceEEeeccccCCcHHHHHHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHH
Q 000735 869 SFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 869 ~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~e 947 (1324)
+|..+.. .+...| ++++|||+.+-... ....|..+. .+.|+|+|+||+|++.. ... ...+.
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~-----~~~-~~~i~--------- 119 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPK-----SVK-KNKVK--------- 119 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCC-----ccC-HHHHH---------
Confidence 5666443 445455 99999999874322 222232222 37899999999999631 000 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 948 f~~~l~~I~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.-+...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 120 -----~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 120 -----NWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -----HHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011122233331 1268999999999999999998654
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0028 Score=74.63 Aligned_cols=70 Identities=26% Similarity=0.222 Sum_probs=52.7
Q ss_pred cccCCCEEEEeCCCCcchhhhhhhccCcccceEEeecccc--------CCcHHHHHHHHHHH---h----cCCcEEEEee
Q 000735 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--------GLEPQTIESLNLLK---M----RNTEFIVALN 917 (1324)
Q Consensus 853 ~~~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~--------Gv~~QT~E~l~ll~---~----~~vP~IVaIN 917 (1324)
.++...+.++|++||.+=..-|...+-.++.+|+||+.+. ..+-.-.+++.+.. . .+++||+++|
T Consensus 191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN 270 (354)
T KOG0082|consen 191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN 270 (354)
T ss_pred EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence 4555679999999999988889999999999999999864 11222334444333 2 3689999999
Q ss_pred ccccc
Q 000735 918 KVDRL 922 (1324)
Q Consensus 918 KiDl~ 922 (1324)
|+|+.
T Consensus 271 K~DLF 275 (354)
T KOG0082|consen 271 KKDLF 275 (354)
T ss_pred cHHHH
Confidence 99984
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0064 Score=80.97 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCce-------eeeeeeeEeccccccchhhhccccccccCCCEEEEeCCC
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGI-------TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGI-------Tq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPG 866 (1324)
-|=-.|||++|+||||+|...-. ++...+..+- |+++- . |-...-.+|||.|
T Consensus 125 LPWy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cd-w-------------------wf~deaVlIDtaG 183 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCD-W-------------------WFTDEAVLIDTAG 183 (1188)
T ss_pred CCceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccC-c-------------------ccccceEEEcCCc
Confidence 45578999999999999865421 1111111110 22221 1 1123578999999
Q ss_pred ----C--cc---------hhhh--hhhccCcccceEEeeccccCCc--HHHH-HHHHHHH----------hcCCcEEEEe
Q 000735 867 ----H--ES---------FTNL--RSRGSGLCDIAILVVDIMHGLE--PQTI-ESLNLLK----------MRNTEFIVAL 916 (1324)
Q Consensus 867 ----H--e~---------F~~~--r~rg~~~aDiaILVVDa~~Gv~--~QT~-E~l~ll~----------~~~vP~IVaI 916 (1324)
| .+ |..+ ..|..+..|+|||.+++.+-++ ++-+ .+...|+ ...+|+.|++
T Consensus 184 ry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~l 263 (1188)
T COG3523 184 RYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVL 263 (1188)
T ss_pred ceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3 22 2222 3356677899999999987433 2222 1122222 2468999999
Q ss_pred eccccccC
Q 000735 917 NKVDRLYG 924 (1324)
Q Consensus 917 NKiDl~~~ 924 (1324)
||+|++++
T Consensus 264 Tk~Dll~G 271 (1188)
T COG3523 264 TKADLLPG 271 (1188)
T ss_pred eccccccc
Confidence 99999875
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0043 Score=66.16 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.1
Q ss_pred hccCcccceEEeec---cccCCcHHHHHHHHHHHhcCCcEEEEeeccc
Q 000735 876 RGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1324)
Q Consensus 876 rg~~~aDiaILVVD---a~~Gv~~QT~E~l~ll~~~~vP~IVaINKiD 920 (1324)
..+..+|+ ||+| .++...++.++.+..+...+.|+|+++|+..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 34455666 7888 6667777888888888888999999999853
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=72.10 Aligned_cols=8 Identities=75% Similarity=1.041 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000735 530 RKKREEEE 537 (1324)
Q Consensus 530 ~~~reEEe 537 (1324)
++.|+|++
T Consensus 349 qkEreE~e 356 (1118)
T KOG1029|consen 349 QKEREEEE 356 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0071 Score=56.50 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhh-h
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 874 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~-r 874 (1324)
+|+|.|..|+||||+...|...-...+. .+ ..+ + .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~------~v--~~~--~------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGK------RV--LLI--D------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC------eE--EEE--C------------------CEEEEeCCCCccchhhhh
Confidence 4788999999999999988643211110 00 000 0 4899999997654432 1
Q ss_pred hhccCcccceEEeeccccCCcHHHHHH----HHHHHhcCCcEEEEee
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES----LNLLKMRNTEFIVALN 917 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~----l~ll~~~~vP~IVaIN 917 (1324)
......+|.+++|++............ .........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 345668999999999876443333332 2222234456677766
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0056 Score=58.78 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=49.4
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1263 ~vf~-~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
.+|+ ...+.|+..+|..|.|+.|..|++ +.+ ..++|.||+.++.++.++..|+.|+|.|
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l 71 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNV 71 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEE
Confidence 3665 334567777999999999999987 444 4689999999999999999999999975
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.007 Score=70.37 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
..|+.+|+|+|-.|+||||.+..|.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 45677899999999999999998864
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0079 Score=54.24 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCCeEEEEEEeeceeecCCcEEecCCcEEEEEeeechhccCcccccccCCCceEEe
Q 000735 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIK 1323 (1324)
Q Consensus 1268 ~~~~iaG~~V~~G~l~~~~~~~v~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~ 1323 (1324)
..+.|+.|+|.+|.|++|..+.+......+.++|.+|.+.+..+..+..|+.|+|.
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~ 68 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIV 68 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEE
Confidence 45789999999999999999998652335678999999999999999999999985
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0057 Score=59.35 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=45.4
Q ss_pred EEEEEc-CCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhh
Q 000735 796 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlG-hvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r 874 (1324)
+|+|+| ..|+||||+.-.|...-...+ . ....+..+. . +.+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~----~----~vl~~d~d~--------------~-~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRG----K----RVLLIDLDP--------------Q-YDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCC----C----cEEEEeCCC--------------C-CCEEEEeCcCCCCHH--H
Confidence 366777 789999999888764322111 0 011111110 0 459999999975433 3
Q ss_pred hhccCcccceEEeeccccC
Q 000735 875 SRGSGLCDIAILVVDIMHG 893 (1324)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G 893 (1324)
...+..||.+|++++.+..
T Consensus 56 ~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 56 RNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHCCEEEEeccCCHH
Confidence 3567789999999988653
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0069 Score=66.88 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=38.3
Q ss_pred CCEEEEeCCCCcchh------hhhhhccCcccc---eEEeeccccCCcHHHH-----HHHHHHHhcCCcEEEEeeccccc
Q 000735 857 PGLLVIDTPGHESFT------NLRSRGSGLCDI---AILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~------~~r~rg~~~aDi---aILVVDa~~Gv~~QT~-----E~l~ll~~~~vP~IVaINKiDl~ 922 (1324)
.++.|+|+||+..|. +...+.+...|+ +|-+||+.--..|... -++.-+.....|-|-|+.|+|++
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 469999999965531 222233333444 4444554322233322 22333345678999999999985
Q ss_pred c
Q 000735 923 Y 923 (1324)
Q Consensus 923 ~ 923 (1324)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 3
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0073 Score=64.83 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.4
Q ss_pred cceEEeeccccCCcHHHHHHHHH--HHhcCCcEEEEeeccccc
Q 000735 882 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l~l--l~~~~vP~IVaINKiDl~ 922 (1324)
|++|+|||+...+.......+.+ +...+.|+|+|+||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998776665555555 555679999999999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.12 Score=59.28 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=24.6
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
...-|-|+-.|.|..|+||||||++|+..
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHcc
Confidence 34467788899999999999999999853
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.024 Score=75.11 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=12.7
Q ss_pred eCCCCCHHHHH-HHHHhCCeEEEcchHHHHH
Q 000735 1200 FDVKVTPEARE-LAEELGVKIFIADIIYHLF 1229 (1324)
Q Consensus 1200 Fnvkv~~~a~~-~A~~~gV~I~~~~IIY~L~ 1229 (1324)
||++-...... -|+-.+--.+....||.|-
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1021)
T PTZ00266 978 YNAKKEYHDEEERAELANSYTLQKRNMYALK 1008 (1021)
T ss_pred cchhhhcchhhhhhhccccceeeccchHHHH
Confidence 55554333321 2333333344455566553
|
|
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.023 Score=53.64 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=53.3
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCce-eEEeeeccCCCCCceeeecceeecccccccccceeee
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1095 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~-~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~ 1095 (1324)
|++.|+.+.+.+..|.++.++|++|+|+.||.|.++..+... ..+|..|+.+...... ...++. .|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~-------~v~~~~--aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRV-------EVEEAE--AGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCee-------ECcEEC--CCCEEE
Confidence 468899999999999999999999999999999877653211 1223333211111111 112222 344556
Q ss_pred ccccccccCCCce
Q 000735 1096 AQGLEHAIAGTGL 1108 (1324)
Q Consensus 1096 ~~gL~~~~aG~~l 1108 (1324)
+.||..+.+|+.+
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 7788878888765
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0023 Score=66.42 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
|+|+|+|+.|+|||||+..|.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=71.17 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=63.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
.|.|+|.-++|||.||..|++..+..+..+.++..+....+.... ....+.+-|.+-. ....+..
T Consensus 427 ~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g--------------~~k~LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 427 QCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG--------------QQKYLILREIGED-DQDFLTS 491 (625)
T ss_pred eEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc--------------ccceEEEeecCcc-ccccccC
Confidence 389999999999999999998776653322222221111111000 0012444444432 2222222
Q ss_pred hccCcccceEEeeccccCCcHHHHHHHHHH-----HhcCCcEEEEeeccccc
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll-----~~~~vP~IVaINKiDl~ 922 (1324)
. -..||+++||+|.+... ...++..+ ....+|+++|.+|+|+-
T Consensus 492 k-e~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 492 K-EAACDVACLVYDSSNPR---SFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred c-cceeeeEEEecccCCch---HHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 2 26799999999998533 33333222 12679999999999984
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.048 Score=67.94 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000735 534 EEEERLRKEEEERKRLEELERQA-EEAKRRKKEKEKE 569 (1324)
Q Consensus 534 eEEe~~~~eEEer~~~ee~er~~-~e~~~~k~~~~ke 569 (1324)
..|-++.||||++++.+++|+.+ +-++.|+-+.++.
T Consensus 380 QReiE~qrEEerkkeie~rEaar~ElEkqRqlewEra 416 (1118)
T KOG1029|consen 380 QREIERQREEERKKEIERREAAREELEKQRQLEWERA 416 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554444443332 3333444444444
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=66.29 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=56.1
Q ss_pred cCcccceEEeeccccC-CcHHHH-HHHHHHHhcCCcEEEEeeccccccCcccCCCchHHHHHHHHhHHHHHHHHHHHHHH
Q 000735 878 SGLCDIAILVVDIMHG-LEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1324)
Q Consensus 878 ~~~aDiaILVVDa~~G-v~~QT~-E~l~ll~~~~vP~IVaINKiDl~~~w~~~~~a~~~~~L~~q~~~v~~ef~~~l~~I 955 (1324)
....|-+||||.+.++ +...-+ ..|-++...++..||||||+|++.. .... . ...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~~---------------~--~~~ 133 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEAA---------------V--KEL 133 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHHH---------------H--HHH
Confidence 3446777888877664 333333 4555667788999999999999731 1110 0 112
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCccCCChhhHHHHHHHH
Q 000735 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 956 ~~~L~e~Gl~~e~~~~~~~~g~~v~vVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...| ++++.+|+++++|+..|...|...
T Consensus 134 ~~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 134 LREYEDIG---------------YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCC
Confidence 22233333 589999999999999988877543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0033 Score=74.00 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t 817 (1324)
.|||+|+.|+||||||..|++.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC
Confidence 3999999999999999999864
|
|
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.021 Score=54.12 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=55.2
Q ss_pred cccceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceee
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKI 1094 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i 1094 (1324)
.||.+.|+.+.+.+..|.+..++|++|+|+.|+.|.+.. + ...+|..|+.+.......+ .+ +..|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~-~~~~v~~l~~~~g~~~~~v-------~~--~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR--E-EKIKITELRVFNNGEVVTA-------DT--VTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC--C-cEEEeceeEEEeCCCeEEC-------cE--ECCCCEE
Confidence 478899999999999999999999999999999986543 1 1123333332222111111 11 2346677
Q ss_pred eccccccccCCCce
Q 000735 1095 TAQGLEHAIAGTGL 1108 (1324)
Q Consensus 1095 ~~~gL~~~~aG~~l 1108 (1324)
++.||....+|+.|
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 78899888888765
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.037 Score=49.80 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=39.1
Q ss_pred cceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeecc
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll 1066 (1324)
+.+.|..++.+.+.|.++.++|.+|+|+.|+.+.+++.......+|+.|.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~ 50 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLK 50 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeE
Confidence 35788999999999999999999999999999988764333344455443
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=57.53 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC----cEEEEeec
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 918 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v----P~IVaINK 918 (1324)
.+.|||||+..... ....+..||.+|+|++.+..-...+...+.++...+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975543 3446788999999998876555556666666665543 56788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.017 Score=52.76 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=46.1
Q ss_pred eeEEEEEEEeeeecCCCEEEEcccCC---ceeEEeeeccCCCCCceeeecceeecccccccccceeeecccccc-ccCCC
Q 000735 1031 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1106 (1324)
Q Consensus 1031 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g---~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gL~~-~~aG~ 1106 (1324)
|++++++|++|+|+.||.|++++... +...+|+.|+.++......+. .+..|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~---------~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVA---------GANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEET---------TEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCC---------ceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999966221 344666666654422111111 123567788888888 57887
Q ss_pred ce
Q 000735 1107 GL 1108 (1324)
Q Consensus 1107 ~l 1108 (1324)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0041 Score=62.38 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=57.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccccc---chhhhccccccccCCCEEEEeCCCCcchh
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR---ERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~---~r~~~v~~~~~~~~~~I~IIDTPGHe~F~ 871 (1324)
..++|.|.+|+|||+|+.++............ ++...++...... .....+.......... ......+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 45899999999999999999864322111000 1222222221111 0001110001111111 11122233
Q ss_pred hhhhhccCcccceEEeeccccCC-cHHHHHHHHHHH-hcCCcEEEEeec
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 918 (1324)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~ll~-~~~vP~IVaINK 918 (1324)
......+......|||||-.+.+ .....+.|..+. ..++++|++.+-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44444455555589999988877 767777776554 345788888764
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.018 Score=64.56 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcE-EEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~-IVaINKiDl 921 (1324)
.+.+.|||||+...+. ....+..+|.+|+|++....-...+...+.++...++++ .|++|+++.
T Consensus 108 ~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 3679999999876543 334456799999999987544455566666666677774 589999985
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0095 Score=68.69 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
.+|++||.-|+||||||..|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 468999999999999999997543
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0058 Score=71.97 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCc
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe 868 (1324)
-.+++.|+|+|.+++|||||+++|....+ ..|..+|+|..+--..+. ..|.|||.||..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-------------------k~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-------------------KKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-------------------CCceeccCCcee
Confidence 34667799999999999999999987665 457777777655433322 359999999953
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.011 Score=66.30 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHH------hcCCcEEEEeeccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 920 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~------~~~vP~IVaINKiD 920 (1324)
.+.+.||||||+.+. +....+..+|++|+.+..+.--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 467999999998753 3445678899999888775422223333333322 34688899999987
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=60.44 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
.+.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 47789999999999999999999754
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.023 Score=61.92 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCc---HHHHHHHHHHHhc--CCcE-EEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~ll~~~--~vP~-IVaINKiDl 921 (1324)
.+.+.||||||.. ..+....+..+|.+|+++..+.--. .++...+..+... +.|. .|++|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 3579999999974 4455667889999999998764222 2333344333222 4554 466676653
|
|
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.021 Score=54.42 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=49.4
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCcEEe-cCC-cEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1264 vf~-~~~~~iaG~~V~~G~l~~~~~~~v-~~~-~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|+ +..+.|+.-+|..|.|++|+.+.+ +.+ ..-+..+|.||+.++..++++..|+.|+|.|
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l 71 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLAL 71 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEE
Confidence 565 344667777999999999999987 442 1124689999999999999999999999975
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.023 Score=66.75 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred cccCCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
.+..-++-+|.++|.-|+||||.+-.|.+
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 34456777899999999999999988853
|
|
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.023 Score=53.55 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=47.5
Q ss_pred cccCCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1264 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1264 vf~~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
+|+...+.|+.-+|..|+|++|..|.+ +.+ ...+|.||+.++.+++++..|+-|+|.+
T Consensus 9 v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l 67 (83)
T cd03698 9 KYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKL 67 (83)
T ss_pred EEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEE
Confidence 554224556666999999999999987 454 2579999999999999999999999874
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.09 Score=65.38 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=10.1
Q ss_pred HhcCCcEEEEeecccc
Q 000735 906 KMRNTEFIVALNKVDR 921 (1324)
Q Consensus 906 ~~~~vP~IVaINKiDl 921 (1324)
...+-|+++|.-|-|+
T Consensus 1188 ~~~kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1188 HPDKPPILLVAGKDDM 1203 (1259)
T ss_pred cCCCCCeEEEecCchH
Confidence 4445677777777664
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.095 Score=65.22 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=4.4
Q ss_pred eEEeecccc
Q 000735 884 AILVVDIMH 892 (1324)
Q Consensus 884 aILVVDa~~ 892 (1324)
-||+|...+
T Consensus 1193 P~lLvAGkD 1201 (1259)
T KOG0163|consen 1193 PILLVAGKD 1201 (1259)
T ss_pred CeEEEecCc
Confidence 345555544
|
|
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.045 Score=51.32 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=52.6
Q ss_pred ceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeecc
Q 000735 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1324)
Q Consensus 1018 ~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~ 1097 (1324)
.+.|+.+.+.+..|.++.++|++|+|+.||.|.+++... ..+|..|+.+.+.....+ .+ +.+|-.+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v-------~~--~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEV-------EE--AGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceEC-------CE--eCCCCEEEEE
Confidence 467888888888999999999999999999998776432 123333332222211111 22 2345566667
Q ss_pred ccccccCCCce
Q 000735 1098 GLEHAIAGTGL 1108 (1324)
Q Consensus 1098 gL~~~~aG~~l 1108 (1324)
|+....+|+.+
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 88888888776
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.02 Score=73.13 Aligned_cols=132 Identities=18% Similarity=0.237 Sum_probs=81.1
Q ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeee-----------------------eeeEecccccc----
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-----------------------GATYFPAENIR---- 842 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~i-----------------------ga~~~~~e~i~---- 842 (1324)
.-+-.|.|+|+|...+|||+.|+.|++..+..-..+.+|... ...+.+...++
T Consensus 25 ~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~ 104 (657)
T KOG0446|consen 25 SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR 104 (657)
T ss_pred CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence 345667899999999999999999997554432222233211 00010110000
Q ss_pred chhhhccc--------ccc-----ccCCCEEEEeCCCCcc-------------hhhhhhhccCcccceEEeeccccCCcH
Q 000735 843 ERTRELKA--------NAT-----LKVPGLLVIDTPGHES-------------FTNLRSRGSGLCDIAILVVDIMHGLEP 896 (1324)
Q Consensus 843 ~r~~~v~~--------~~~-----~~~~~I~IIDTPGHe~-------------F~~~r~rg~~~aDiaILVVDa~~Gv~~ 896 (1324)
..+..+.. ... -....+++||+||... ...|...++...+.+||.|.... ..-
T Consensus 105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~ 183 (657)
T KOG0446|consen 105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDI 183 (657)
T ss_pred hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhh
Confidence 00000000 000 1134699999999533 46678889999999999998765 445
Q ss_pred HHHHHHHHHHhc---CCcEEEEeeccccc
Q 000735 897 QTIESLNLLKMR---NTEFIVALNKVDRL 922 (1324)
Q Consensus 897 QT~E~l~ll~~~---~vP~IVaINKiDl~ 922 (1324)
-|.++|.+++.. +.-.|-|++|.|+.
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 566777777653 46788888998875
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.097 Score=62.76 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
+.|+|+|+|-+|||||+.+|..
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred eEEEeecCcccCchhHHHHHHH
Confidence 4699999999999999999964
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.033 Score=52.36 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=47.5
Q ss_pred ccccCCCCeEEEEEEeeceeecCCcEEe-cCCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1263 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1263 ~vf~~~~~~iaG~~V~~G~l~~~~~~~v-~~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
.+|... +.|+.-+|..|.|++|..|.+ +.+. ...|.||+.++..++++..|+-|+|.+
T Consensus 8 ~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~---~~~V~si~~~~~~~~~a~aGd~v~l~l 66 (82)
T cd04089 8 DKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKT---QVEVLSIYNEDVEVRYARPGENVRLRL 66 (82)
T ss_pred eEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCc---EEEEEEEEECCEECCEECCCCEEEEEe
Confidence 356533 556666999999999999987 4552 578999999999999999999999975
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.01 Score=68.62 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
+..+|+|+|+.|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999988643
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.058 Score=61.57 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCc---HHHHHHHHHH-HhcCCcE-EEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLL-KMRNTEF-IVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~ll-~~~~vP~-IVaINKiDl 921 (1324)
.+.+.||||||...... +...+..||.+|+++....--. ..++..+..+ ...++++ .|++|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 36799999998754322 2224778999999998753211 2333334322 2345664 378999874
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.027 Score=68.02 Aligned_cols=68 Identities=26% Similarity=0.222 Sum_probs=49.9
Q ss_pred cCCCEEEEeCCCCcchhhhhhhccCcccceEEeecccc--------CCcHHHHHHHH---HHHh----cCCcEEEEeecc
Q 000735 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--------GLEPQTIESLN---LLKM----RNTEFIVALNKV 919 (1324)
Q Consensus 855 ~~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~--------Gv~~QT~E~l~---ll~~----~~vP~IVaINKi 919 (1324)
....+.|+|+.|+..-..-|...+..++++|+||+.++ .-.-...++|. .+.. .++||||++||+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34568999999998888889999999999999999753 11222333343 3322 368999999999
Q ss_pred ccc
Q 000735 920 DRL 922 (1324)
Q Consensus 920 Dl~ 922 (1324)
|++
T Consensus 314 D~f 316 (389)
T PF00503_consen 314 DLF 316 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.019 Score=54.58 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCcEEec-CCcEEEEEeeechhccCcccccccCCCceEEeC
Q 000735 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1263 ~vf~-~~~~~iaG~~V~~G~l~~~~~~~v~-~~~~i~~G~i~Sl~~~k~~v~~~~kG~e~gi~i 1324 (1324)
.+|+ ...+.|+-.+|..|+|+.|..|++. .+. -....|.||+.++.++.++..|+.|+|.|
T Consensus 7 ~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l 69 (87)
T cd03697 7 DVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLL 69 (87)
T ss_pred EEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEE
Confidence 3565 2345556669999999999999873 221 13578999999999999999999999975
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.018 Score=68.87 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
-+++|+|++|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999999864
|
|
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.12 Score=63.18 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t 817 (1324)
++.+|+|+|.+|+||||+...|...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~ 278 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYR 278 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999643
|
|
| >cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.12 Score=51.51 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred cccccceeEEEEEEEc--------CceeEEEEEEEeeeecCCCEEEEc
Q 000735 1013 FRNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1052 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~--------G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1052 (1324)
+..++.+.|..+|.+. +.|.|+.+.|.+|+|+.||.|-|.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 3467889999999998 999999999999999999999665
|
eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. |
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.078 Score=49.81 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=51.4
Q ss_pred ceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccc-cccceeeec
Q 000735 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1324)
Q Consensus 1018 ~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~ 1096 (1324)
.+.|+.+.+.+..|....++|++|+|+.||.|.++.... ..+|..|+.++.... .++. +.+|-.+.+
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~----------~~v~~~~aGdI~~i 69 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY----------QEIPSLSAGNIGVI 69 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc----------eECCeeCCCCEEEE
Confidence 467888888899999999999999999999997664321 122323321111111 1122 234555667
Q ss_pred cccccccCCCceE
Q 000735 1097 QGLEHAIAGTGLY 1109 (1324)
Q Consensus 1097 ~gL~~~~aG~~l~ 1109 (1324)
.||+.+..|+.+.
T Consensus 70 ~gl~~~~~Gdtl~ 82 (83)
T cd04092 70 TGLKQTRTGDTLV 82 (83)
T ss_pred ECCCCcccCCEEe
Confidence 7888888887763
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.071 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~t~ 818 (1324)
..+|+|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999998653
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.042 Score=56.42 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t 817 (1324)
+++|+|.+|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.32 Score=51.62 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~ 816 (1324)
.|.|.|++|+|||||+.+|..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHH
Confidence 499999999999999988863
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.024 Score=60.71 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCC---cEEEEeecccc
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVDR 921 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v---P~IVaINKiDl 921 (1324)
+.+.|||||++.... ....+..+|.+|++++...--...+..++..+...+. .+.+++|+++.
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 779999999976554 4456678999999999865333445555666666663 45789999985
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.017 Score=67.69 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ 820 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~ 820 (1324)
.++-|++||.+|+||||++|.||...|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccc
Confidence 4556999999999999999999988765
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.02 Score=58.35 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~ 816 (1324)
+|+|+|++|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
|
... |
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.13 Score=58.56 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHH----hcCCcE-EEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK----MRNTEF-IVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~----~~~vP~-IVaINKiDl 921 (1324)
.+.+.||||||+..... +...+..+|.+|+++...---...+...+..+. ..++++ .|++|+++.
T Consensus 115 ~yD~ViID~~~~~~~~~-~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGG-FATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCc-cccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 46799999998643211 123467899999988653221112222322222 245654 478899874
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.089 Score=69.00 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=49.0
Q ss_pred CCEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHHHHHHHHhcCCcEE-EEeecccc
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDR 921 (1324)
Q Consensus 857 ~~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VaINKiDl 921 (1324)
+.+.|||||+...+..... .+..||++|+|+....-...+..+.+..+...+.+++ ||+|++|.
T Consensus 656 yD~IiID~pp~~~~~d~~~-l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 656 SDCVVVDVGTADPVRDMRA-AARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred CCEEEEcCCCcchhHHHHH-hhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 5799999999866544432 3457999999998765555677788888888787754 99999985
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.066 Score=62.06 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=62.2
Q ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCC-
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH- 867 (1324)
+...|.|.+.|+|.+|.|||+|+.+|+..+-......+. .+ .++++.+|.-
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-------~~---------------------PVv~vq~P~~p 107 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-------RI---------------------PVVYVQMPPEP 107 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-------cc---------------------cEEEEecCCCC
Confidence 345788889999999999999999998654221111110 00 1333333331
Q ss_pred -----------------------cchhhhhhhccCcccceEEeeccccCC----cHHHHHHHHHHH----hcCCcEEEEe
Q 000735 868 -----------------------ESFTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESLNLLK----MRNTEFIVAL 916 (1324)
Q Consensus 868 -----------------------e~F~~~r~rg~~~aDiaILVVDa~~Gv----~~QT~E~l~ll~----~~~vP~IVaI 916 (1324)
.....+..+.++.+.+=+||||=.|.+ ..+-+++++.|+ ...+|+|.|.
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 112223345677788889999976643 334445555554 3578999888
Q ss_pred ec
Q 000735 917 NK 918 (1324)
Q Consensus 917 NK 918 (1324)
+.
T Consensus 188 t~ 189 (302)
T PF05621_consen 188 TR 189 (302)
T ss_pred cH
Confidence 65
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.06 Score=62.13 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 000735 795 PICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~ 816 (1324)
++|+|+|..|+|||||+.+|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.072 Score=59.97 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG 822 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~g 822 (1324)
+.-+++|.|++|+|||+|..+|+......|
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g 49 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG 49 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 455689999999999999999876554433
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.097 Score=58.58 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred CEEEEeCCCCcchhhhhhhccCcccceEEeeccccCCcHHHHH-HH-HHHHh--cCCcEEEEeecccc
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDR 921 (1324)
Q Consensus 858 ~I~IIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~ll~~--~~vP~IVaINKiDl 921 (1324)
.+.|||||+. +..+....+..||.+|+|+....- ...... .+ .++.. ...++-|++|++|.
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNADAA-CYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHH-HHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 6999999995 344556677899999999987531 111111 22 22221 23457799999985
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.12 Score=62.29 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCCEEEEeCCC--Ccchhhhhh----hccCcccceEEeeccccCCc--HHHHHHHHHHHhcCCcE---EEEeeccccc
Q 000735 856 VPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEF---IVALNKVDRL 922 (1324)
Q Consensus 856 ~~~I~IIDTPG--He~F~~~r~----rg~~~aDiaILVVDa~~Gv~--~QT~E~l~ll~~~~vP~---IVaINKiDl~ 922 (1324)
+..+.+|||+| |.+-.-|+. .-...+|.+|+|--|--|-. .|...+-..|.....|. -|+|+|+|.+
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccch
Confidence 45699999999 444322222 23456899999987765532 24444434444444443 3689999986
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.022 Score=61.04 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=23.3
Q ss_pred CcccceEEeecc---ccCCcHHHHHHHHHHHhcCCcEEEEeecc
Q 000735 879 GLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 879 ~~aDiaILVVDa---~~Gv~~QT~E~l~ll~~~~vP~IVaINKi 919 (1324)
..+| |+|||= |.-..+.-.+.+..+...+.|+|.++-+.
T Consensus 94 ~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3445 778874 33334566677777777889999999887
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.11 Score=55.61 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccc----cccchhhhccccc-c-ccCCCEEEEeCCCCcc
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE----NIRERTRELKANA-T-LKVPGLLVIDTPGHES 869 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e----~i~~r~~~v~~~~-~-~~~~~I~IIDTPGHe~ 869 (1324)
+++|.|.+|+|||+|.-+|.......|.. +.++.++ .+..+...+.... . .....+.++|.+...-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~--------v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEP--------GLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCc--------EEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence 37899999999999999987654333221 2222222 1111111111110 0 1123467788764221
Q ss_pred ----------hhhhhhhccCcccceEEeeccccCCc----HHH----HHHHHHHHhcCCcEEEEee
Q 000735 870 ----------FTNLRSRGSGLCDIAILVVDIMHGLE----PQT----IESLNLLKMRNTEFIVALN 917 (1324)
Q Consensus 870 ----------F~~~r~rg~~~aDiaILVVDa~~Gv~----~QT----~E~l~ll~~~~vP~IVaIN 917 (1324)
+.....+.+...+.-+||||.-..+. ... ...+..++..++++|++..
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~ 138 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE 138 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 11222333344567788998754322 222 2334455566777776643
|
A related protein is found in archaea. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.17 Score=55.95 Aligned_cols=99 Identities=22% Similarity=0.251 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccc--cchhhhccccccc----cCCCEEEEeCCC
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI--RERTRELKANATL----KVPGLLVIDTPG 866 (1324)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i--~~r~~~v~~~~~~----~~~~I~IIDTPG 866 (1324)
+.-++.|.|.+|+|||+|+-.|.......+..+|. +.+..|+..+.. ..+...+.....+ -...|.+++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~--~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGL--EGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCC--cceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 44578999999999999999987543333333332 122333333321 1111111100000 023477776655
Q ss_pred Ccchhhhhhhc---cCcccceEEeeccccC
Q 000735 867 HESFTNLRSRG---SGLCDIAILVVDIMHG 893 (1324)
Q Consensus 867 He~F~~~r~rg---~~~aDiaILVVDa~~G 893 (1324)
...+....... .....+-++|||.-..
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44443333222 2345777899998543
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=55.73 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCcchhhhhh-hccCcccceEEeeccccC-C--cHHHHHHHHHHHhc-CCcE-EEEeecccc
Q 000735 856 VPGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHG-L--EPQTIESLNLLKMR-NTEF-IVALNKVDR 921 (1324)
Q Consensus 856 ~~~I~IIDTPGHe~F~~~r~-rg~~~aDiaILVVDa~~G-v--~~QT~E~l~ll~~~-~vP~-IVaINKiDl 921 (1324)
.+.+.||||||+........ .....||.+|+|+....- + .....+.+..++.. ++++ .|++|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 46799999998764322211 112479999999987531 1 12333444444332 5444 489999984
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.18 Score=47.88 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=49.9
Q ss_pred eEEEEEE---EcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccccceeeec
Q 000735 1020 TVLEVKV---IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1324)
Q Consensus 1020 ~VlEvk~---i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~ 1096 (1324)
.|+.+.. .+..|..+.++|++|+|+.||.|...... . ..+|..|+.+.......+ . .+..|-.+++
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~-~-~~kv~~l~~~~g~~~~~v-------~--~a~aGdIv~v 70 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLG-K-EVRLSNPQQFFAQDRETV-------D--EAYPGDIIGL 70 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCC-C-EEEeeEeEEEecCCeeEc-------C--EECCCCEEEE
Confidence 5667766 77889999999999999999999765532 1 123333332222211111 1 1234667777
Q ss_pred cccccccCCCce
Q 000735 1097 QGLEHAIAGTGL 1108 (1324)
Q Consensus 1097 ~gL~~~~aG~~l 1108 (1324)
.||.....|+.|
T Consensus 71 ~gl~~~~~Gdtl 82 (85)
T cd03689 71 VNPGNFQIGDTL 82 (85)
T ss_pred ECCCCccccCEe
Confidence 888888888876
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.08 Score=58.80 Aligned_cols=123 Identities=15% Similarity=-0.012 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccccc-----------------Cceeeeee--------------------------
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----------------GGITQQIG-------------------------- 832 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~-----------------gGITq~ig-------------------------- 832 (1324)
+|++.|+.|+||||+.-.|...-...|.. .|++.-++
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Q ss_pred -----------eeEeccccccchhhhccccccccCCCEEEEeCCCC---cchhhhhhhccCcccceEEeeccccCCcHHH
Q 000735 833 -----------ATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---ESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898 (1324)
Q Consensus 833 -----------a~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGH---e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT 898 (1324)
...-+.+.+. ...+........+.+.|||||.. .++.......-..+|.+|||+........++
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~--~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~ 158 (217)
T cd02035 81 GEGGLMLELAAALPGIEELAS--LLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYET 158 (217)
T ss_pred chhhhHHhHhccCCCHHHHHH--HHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHH
Q ss_pred HHHHHHHHhcCCc-EEEEeeccc
Q 000735 899 IESLNLLKMRNTE-FIVALNKVD 920 (1324)
Q Consensus 899 ~E~l~ll~~~~vP-~IVaINKiD 920 (1324)
...+..++..+++ .-+|+|++.
T Consensus 159 ~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 159 ERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred HHHHHHHHHCCCCCCEEEEeCCc
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.25 Score=46.84 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred ceeEEEEEEEcCceeEEEEEEEeeeecCCCEEEEcccCCceeEEeeeccCCCCCceeeecceeecccccccc---cceee
Q 000735 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKI 1094 (1324)
Q Consensus 1018 ~~~VlEvk~i~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~~~~~IR~ll~p~p~~e~rVk~~~~~~k~v~aa---~gv~i 1094 (1324)
.+.|..+|.+.+.|+++.++|.+|+|+.|+.+.+++.+..+++ ..|.+++.++..+..+ ..+.|
T Consensus 2 ~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~-------------g~i~sl~~~~~~v~~a~~G~ecgi 68 (84)
T cd03692 2 EAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYE-------------GKISSLKRFKDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEE-------------EEEEEEEEcCcccCEECCCCEEEE
Q ss_pred eccccccccCCCceEE
Q 000735 1095 TAQGLEHAIAGTGLYV 1110 (1324)
Q Consensus 1095 ~~~gL~~~~aG~~l~v 1110 (1324)
.+.+++....|+.+..
T Consensus 69 ~l~~~~d~~~Gdvi~~ 84 (84)
T cd03692 69 TLENFNDIKVGDIIEA 84 (84)
T ss_pred EEeCcccCCCCCEEEC
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.07 Score=55.23 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccccchhhhccccccccCCCEEEEeCCCCcchhhhhh
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~e~i~~r~~~v~~~~~~~~~~I~IIDTPGHe~F~~~r~ 875 (1324)
+|+|.|.+|+|||||+.+|...-............+................+............-...+ ...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~ 74 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-------LLQ 74 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-------HHH
Q ss_pred hccCcccceEEeeccccCCcHHHHH--------HHHHHHhc----CCcEEEEee
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE--------SLNLLKMR----NTEFIVALN 917 (1324)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--------~l~ll~~~----~vP~IVaIN 917 (1324)
..+....-++||||+-+-+..+... .|..+... ++.+||...
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r 128 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSR 128 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEc
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1324 | ||||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 1e-101 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 2e-98 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 6e-31 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 7e-25 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 1e-19 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 1e-08 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 4e-06 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 4e-06 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 4e-06 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 5e-06 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 7e-06 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 1e-05 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-05 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 6e-05 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 6e-05 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 6e-05 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 2e-04 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 2e-04 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 3e-04 |
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 767 bits (1984), Expect = 0.0
Identities = 201/538 (37%), Positives = 327/538 (60%), Gaps = 14/538 (2%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--K 849
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I + K
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVI 1027
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L + + T+LEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQI 1086
G G TID V+ +G+L + D I + + I T IR+LL P P++E+R + + ++
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 1087 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1146
AA GIKI A G++ +AG+ L VV + + + +ED+K ID GV V+A
Sbjct: 303 VAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIK-----IDTDEAGVVVKA 357
Query: 1147 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
TLGSLEA+++ L+ + +P+ IG V ++DV+ A + L++ + Y I+AF+VKV P
Sbjct: 358 DTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP 415
Query: 1207 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1266
A + + +K+F ++IY L +++ ++ ++EEKK++ + + P ++++P VF
Sbjct: 416 SAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFR 475
Query: 1267 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324
+ P + GV+V+ G+ + G P+ D +G + S+++ + + +A +GQK A+ +
Sbjct: 476 QSKPAIGGVEVLTGVIRQGYPLMN--DDGETVGTVESMQDKGENLKSASRGQKVAMAI 531
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 7e-52
Identities = 131/582 (22%), Positives = 214/582 (36%), Gaps = 126/582 (21%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
RSP+ IMGHVD GKT LLD +R T V EAGGITQ IGA + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLKMR 908
+DTPGH +F+ +R+RG+ + DI ILVV +M QT+ES+ K
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM----KQTVESIQHAKDA 103
Query: 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 968
+ ++A+NK D+ A K +K++ L + E
Sbjct: 104 HVPIVLAINKCDK-------AEADPEK-VKKE------------------LLAYDVVCED 137
Query: 969 YYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLEVK 1025
Y G+ V SA++GE + L + M+E K ++ TV+E
Sbjct: 138 Y-----GGDV-QAVHVSALTGENMMALAEATIA----LAEMLELKADPTGAVEGTVIESF 187
Query: 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH---------------- 1069
+G G ++ G L +G +V G +R + +
Sbjct: 188 TDKGRGPVTTAIIQRGTLRKGSILVA----GKSWAKVRLMFDENGRAVNEAYPSMPVGII 243
Query: 1070 -----PM-----------KELRVKGTYLHHKQ--IKAAQGIKITAQGLEHAIAG--TGLY 1109
P R + ++Q K + +K+ + +
Sbjct: 244 GWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDRE 303
Query: 1110 VVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEG------VCVQASTLGSLEALLEFLK--- 1160
G E + E + + + E V V+ GS+EA+L +
Sbjct: 304 KYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYD 363
Query: 1161 -SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKI 1219
S ++ + +G + + DV A + I F+V ++LA + GVKI
Sbjct: 364 ASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLAAKKGVKI 417
Query: 1220 FIADIIYHLFDQFTAYIN-NLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVV 1278
+ IIY L + ++ L + EA +L KK P+ G V
Sbjct: 418 KLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS---ILATFSITEGKKKVPVA-GCRVQ 473
Query: 1279 EGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQ 1318
+G + + R+ I G + S++++ K G
Sbjct: 474 KGQIEKQKKFKL-IRNGHVIWKGSLISLKHHKDDTSVVKTGM 514
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 6e-47
Identities = 130/487 (26%), Positives = 211/487 (43%), Gaps = 117/487 (24%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R+P+ IMGHVD GKT LL+ IR T V GEAGGITQ IGA Y
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA-Y----------------- 44
Query: 853 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLK 906
++ ++ +DTPGH +FT++R+RG+ DI +LVV +M PQTIE++ K
Sbjct: 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM----PQTIEAIQHAK 100
Query: 907 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 966
+VA+NK+D K + VK +L + G+
Sbjct: 101 AAQVPVVVAVNKID-----KPEADPDRVK---------------------NELSQYGILP 134
Query: 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLE 1023
E + G V SA +G GI +LL +LL Q ++E K + V+E
Sbjct: 135 E------EWGGESQFVHVSAKAGTGIDELLDAILL----QAEVLELKAVRKGMASGAVIE 184
Query: 1024 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHH 1083
+ +G G V++ G LH+GD IV+CG + +RA+ G
Sbjct: 185 SFLDKGRGPVATVLVREGTLHKGD-IVLCGFE---YGRVRAMRNE--------LG----- 227
Query: 1084 KQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD----------LEDVKEEAMEDMKSV 1131
+++ A I + GL AG + VV D+ +E + +
Sbjct: 228 QEVLEAGPSIPVEILGLSGVPAAGDEVTVV--RDEKKAREVALYRQGKFREVKLARQQKS 285
Query: 1132 -----MSRIDKSGE----GVCVQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKK 1179
+ + GE + ++A GS+EA+ L L +D VK+ + G +G + +
Sbjct: 286 KLENMFANM-TEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITET 344
Query: 1180 DVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL 1239
D A+ A ++ F+V+ AR++ E + + +IY+L D+ A ++ +
Sbjct: 345 DATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGM 398
Query: 1240 KEEKKRE 1246
+ ++
Sbjct: 399 LSPELKQ 405
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-39
Identities = 77/212 (36%), Positives = 105/212 (49%), Gaps = 54/212 (25%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R P+ IMGHVD GKT LLD IR + V E EAGGITQ IGA Y
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGA-Y----------------- 48
Query: 853 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
+ V + +DTPGHE+FT +R+RG+ + DI ILVV G+ PQT+E++N K N
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV 108
Query: 911 EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY 970
IVA+NK+D+ + N D +++ +L E + E +
Sbjct: 109 PIIVAINKMDK----------------PEANPD----------RVMQELMEYNLVPEEW- 141
Query: 971 KNKDRGETFNIVPTSAISGEGIPDLL--LLLV 1000
G+T SA + EG+ LL +LLV
Sbjct: 142 ----GGDTI-FCKLSAKTKEGLDHLLEMILLV 168
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 4e-13
Identities = 55/465 (11%), Positives = 135/465 (29%), Gaps = 143/465 (30%)
Query: 889 DIMHGLEPQTIESL----------NLLKMRNTEFIV----ALNKVDRLYGWKTCR-NAPI 933
DI+ E +++ ++L + I+ A++ RL+ W +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEM 78
Query: 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993
V+ ++ + + I T+ ++ M T +Y + +DR +N
Sbjct: 79 VQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQV-------FA 127
Query: 994 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG---HG------TTIDVVLVNGVLH 1044
+ ++ KL R L E++ + G T + V
Sbjct: 128 KYNV-----SRLQPYLKL--RQALL----ELRPAKNVLIDGVLGSGKT----WVALDVCL 172
Query: 1045 EGDQIVVCGLQGPI-------VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097
V C + I + +L +++L + + + IK+
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1098 GLEHAIAG--------TGLYVVGPDDDLEDVKE-EAMEDMKS---VMSRIDKS------- 1138
++ + L V+ ++++ K A ++ + +R K
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAF-NLSCKILLTTR-FKQVTDFLSA 283
Query: 1139 --GEGVCVQASTLG-----SLEALLEFLKSDAVKIPVSGISIGPVH-------------- 1177
+ + ++ LL++L +P ++ P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 1178 -----------KKDVMRASV-ML---EKKKEYATILAF--DVKVTP-------------E 1207
++ +S+ +L E +K + + F + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 1208 ARELAEELGVKIFIA-DIIYHLFDQFTAYINNLKEEKKREAADEA 1251
+ +L + + T I ++ E K + +E
Sbjct: 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEY 443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-04
Identities = 72/526 (13%), Positives = 148/526 (28%), Gaps = 135/526 (25%)
Query: 216 DLLDDEDEDVRED---KDEEDEP-VIFTDKKKKSKKSGKNSST-----FDLLVNENDD-V 265
D+L ++ ++ KD +D P I + ++ K++ + F L+++ ++ V
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 266 K---EDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT 322
+ E+ + K + M + + E++D+ D +
Sbjct: 80 QKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY----------IEQRDRLYNDNQVF-- 126
Query: 323 DKKKKTKSSKKTVSSFSEVLL---DEENVVEDAPVLSDVSG---------AVDTKQQSGD 370
K S + + LL +NV+ + G A+D
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLGSGKTWVALDVCL---S 173
Query: 371 SSIVESDDFKV--------NKGEVV--------AQTSKNKKKKKEKEKPRSERTAQEEDD 414
+ DFK+ N E V Q N + + R + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 415 LEKILAELGQGPAPQEEKV-----QVQPPEPVAPPD-------------AADEKVGEEEK 456
L ++L E VQ + + D
Sbjct: 234 LRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
S ++ K Q E + T P +++S
Sbjct: 288 HIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--------NP-RRLSIIAES 336
Query: 517 MQEALAR----RKEAEERKKREEEERLR--KEEEERKRLEELERQAEEAK---------- 560
+++ LA + ++ E L + E RK + L A
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR--P 618
+ + ++ K + L+ + KE + ++ K + ++ A +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELK---VKLENEYALHRSIVD 451
Query: 619 KYQTKKKSAHHQANGAVPLKEDS-IES------KEKEQEKQETLLE 657
Y K ++ +P D S K E ++ TL
Sbjct: 452 HYNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 6e-13
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 798 CIMGHVDTGKTKLLDCI---------------RGTNVQEGEAG-GITQQIGAT----YFP 837
++ HVD GK+ L D + R T+ ++ E GIT I +T Y
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGIT--IKSTAISLYS- 79
Query: 838 AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 897
E E +E+K + +ID+PGH F++ + + D A++VVD + G+ Q
Sbjct: 80 -EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
Query: 898 TIESLNLLKMRNTEFIVALNKVDRL 922
T L + +V +NKVDR
Sbjct: 139 TETVLRQALGERIKPVVVINKVDRA 163
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-12
Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 78/300 (26%)
Query: 801 GHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853
GH+D GKT L + + E + GIT IG + F EN R
Sbjct: 26 GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR----------- 74
Query: 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
+ ++D PGH + + D+A++VVD G + QT E + +L N I
Sbjct: 75 -----ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
V + K D E R I+ + ++
Sbjct: 130 VVITKSDN----------------------AGTEEIKRTEMIMKSI----------LQST 157
Query: 974 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---FRNELQCTVLEVKVIEGH 1030
+ +I+P SA +G G+ +L L++ + + T F+ + I+G
Sbjct: 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFK----MPLDHAFPIKGA 213
Query: 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090
GT + + G++ GD++ V + +V+ + + A+
Sbjct: 214 GTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAK 257
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 9e-12
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 34/206 (16%)
Query: 812 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871
+ + + G + + E E ++ K ++IDTPG
Sbjct: 66 EFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETF 123
Query: 872 NLRSRGSGLCD-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDR 921
G L + + + + D +P + + I ALNKVD
Sbjct: 124 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183
Query: 922 LYGWKT------CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 975
L + + + A + + +Q ++ ++T E+
Sbjct: 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT---------EVL------ 228
Query: 976 GETFNIVPTSAISGEGIPDLLLLLVQ 1001
++ SA + EG DL L +
Sbjct: 229 -PPVRVLYLSAKTREGFEDLETLAYE 253
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 36/234 (15%), Positives = 89/234 (38%), Gaps = 25/234 (10%)
Query: 364 TKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELG 423
Q + + +V ++ ++E + + A+ + +K+ L
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL- 926
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+ + +Q+Q K+ +E+ +E + +K E + +
Sbjct: 927 -----ENKIMQLQ------------RKI-DEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
++ + E E K + +++++K +E+ + +K EE + + E +
Sbjct: 969 VERLRMSEE--EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 544 EERKRLEELERQAEEAKRRKKEKEKE--KLLKKKQEG--KLLTGKQKEEARRLE 593
E +++ L+ + EE RR ++ KE + ++KK K L +E R +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 26/247 (10%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND-GKSKGPEKKMS 511
+ ++ K +K A + V + E K
Sbjct: 850 RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK---EK 568
K E + E K + + ++ ++ +E K L E E + EK +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
E+L ++E K T + + +R + K + +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKEL------------HQTQTEKKTIEEWADKY 1017
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
+ E E ++Q TLL+ + E + ++ + E E + +
Sbjct: 1018 ----------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 689 VEEEDDD 695
+E + +D
Sbjct: 1068 LELDLND 1074
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 53/281 (18%), Positives = 114/281 (40%), Gaps = 16/281 (5%)
Query: 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE 526
K +E+E +A K++ + E K+ + K ++ + ++Q E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 527 AEER------KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL 580
AEE KK+E EE L E E R EE Q +A+++K +++ L ++ +E +
Sbjct: 911 AEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
K + E + + ++ +K K + + + +E+
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDD----ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 641 SIESKEKEQEKQETL---LEVDVGETEK-VEEGESLTVEEKPEIADAPKENEVEEEDDDD 696
++ K + K E++ LEV + + EK +E E + + + E +D ++ + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 697 DEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
+ AK +++ +DE + +E++S I
Sbjct: 1086 LKAQLAKKEEELQ-AALARLEDETSQKNNALKKIRELESHI 1125
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 31/326 (9%)
Query: 387 VAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDA 446
V + + + K E+ + ER + E +L+++ + Q EEK +Q
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNLLQE-------KL 901
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
E E EE KK++ +E + A E+++ + +A E KK +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA-EKKKMQQQMLDL 960
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE------ERKRLEEL------ER 554
E+++ ++ Q+ + A+ + K+ E++ L E++ ERK LEE
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
EE K + K K K E ++ K+++ + LE ++ + + L E
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
++ + + + + A+ ED K +K L + + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL-------ESHISDLQEDLE 1133
Query: 675 EEKPEIADAPKEN-EVEEEDDDDDEE 699
EK A K+ ++ EE + E
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTE 1159
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 31/216 (14%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E + + +K + ++ + +E +L + EE+V +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS----DLTTNL 1020
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+EK K ++ + + + K+++ + + K++ + E+ + + + +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQ--AEEAKRR 562
++ Q+ + +E L E + ++ L+K E + +L+ +E+A R
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
K EK+K L ++ + K + + +R
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 46/287 (16%), Positives = 102/287 (35%), Gaps = 42/287 (14%)
Query: 308 EKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQ 367
E + ++EE+ +KKK + + + E L +EE + L D K +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQ---QQMLDLEEQLEEEEAARQK---LQLEKVTADGKIK 986
Query: 368 SGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEE--DDLEKILAELGQG 425
+ I+ +D + T + K ++ + +EE +L K+ +
Sbjct: 987 KMEDDILIMED------QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ E ++ ++E++ +K K+K E E AE
Sbjct: 1041 ISELEVRL-------------------KKEEKSRQELEKIKRKL--EGESSDLHEQIAEL 1079
Query: 486 KQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ Q + K + + + ++ + + AL + +E E + +E L E+
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS-DLQEDLESEKAA 1138
Query: 546 RKRLE----ELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
R + E +L + E K ++ +++ G K ++
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY--KDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 35/211 (16%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
+++ E+E+ ++ E+ + + ++ E++ E E+ +
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-----RKLLEERVSD 1015
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQ 513
A ++K K K K K + + E + ++ + E +K K +G + +Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 514 VREMQEALARRKEAEERKKREEEERLRKE-EEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E+Q +A K + KK EE + E+E + ++ E + + + E L
Sbjct: 1076 IAELQAQIAELKA-QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ-EDLE 1133
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKG 603
+K ++++ + LEA++ +
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 14/181 (7%)
Query: 378 DFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQP 437
+ V + + EK + + E +K +A L Q +++
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYNRILKKLE- 899
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
+ A K E+ S + K K E + E + ++ +
Sbjct: 900 -------NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + A++ + + L E E +++E+L
Sbjct: 953 LTELN----YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Query: 558 E 558
Sbjct: 1009 H 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ ++ E++ A A E K+Q K + K N K +
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK-------LE 899
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+++ + +L+ E + LE Q+ + E
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
E E A + + A +R + HH
Sbjct: 960 GVPE-------LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 17/201 (8%), Positives = 50/201 (24%), Gaps = 18/201 (8%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPP 438
++ QT K++ P + + + + +++ Q
Sbjct: 824 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ-- 881
Query: 439 EPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
+ + + K + + A + EA + +
Sbjct: 882 ------KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ + ++ LA+ E E ER ++ + + +
Sbjct: 936 --------QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 987
Query: 559 AKRRKKEKEKEKL--LKKKQE 577
+ + +K+ L
Sbjct: 988 NTLLAELERLQKIEDLHHHHH 1008
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 5e-09
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA-----KRRKKEKEKE 569
R QE + RK EE++KR +E + + +E +A++ +R+ ++ EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQE----LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 570 KLLKKKQEGKLLTGKQKEE 588
K+ + + +Q +
Sbjct: 135 KINNRIADKAFY--QQPDA 151
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE--RKRLEELERQAEEAKRRK 563
PE + K E ++ L A + ++E E+ +K+ EE +++ E++E K +
Sbjct: 84 PES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------KNKI 136
Query: 564 KEKEKEKLLKKKQEGKLL 581
+ +K ++ + ++
Sbjct: 137 NNRIADKAFYQQPDADII 154
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 11/93 (11%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ +E + +K ++++ K ++ AA+ +Q+ + +A +K + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASK--VMEQEWREKA-------------KKDLEE 122
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ E + + K R ++ ++ + +
Sbjct: 123 WNQRQSEQVEKNK-INNRI--ADKAFYQQPDAD 152
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 5e-08
Identities = 29/212 (13%), Positives = 73/212 (34%)
Query: 444 PDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
PD ++ + E A + + + T + +
Sbjct: 614 PDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAA 673
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
K +++ ++ R E ++E K R+E L + + +AE
Sbjct: 674 KHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAA 733
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+ + + +L+ K + + L + + E R++ +R L + A + + K
Sbjct: 734 RIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAK 793
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQEKQETL 655
K +A G +++ ++ E + + ++L
Sbjct: 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 9e-07
Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 406 ERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
+ + E D A E Q +++ + + + +
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE 698
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK 525
+K KE + A + A E K+EA E++ + +G + +++ A+
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEA-ESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E E KK E E + + + + ++ A EAK+ K+ E +
Sbjct: 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817
Query: 585 QKEEARRL 592
Q + + L
Sbjct: 818 QVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 25/247 (10%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQE---------EKVQV 435
VA + + K R E + L Q V V
Sbjct: 581 GAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDV 640
Query: 436 QPPEPVAPPDAAD-EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
Q EPV ++ + E + S++ K E ++ ++ A K +SEA
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALAR---------------RKEAEERKKREEEERL 539
+ +K + + + EA +R + +A+ E E
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
R ++ L Q E + ++ + K K+ + L +
Sbjct: 761 RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Query: 600 LAKGIPL 606
L + + L
Sbjct: 821 LLQSLGL 827
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 103/316 (32%)
Query: 794 SPICCI--MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
S + + +G +G+T L + G + I E
Sbjct: 19 SHMANVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRN--------- 61
Query: 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMR 908
++ +D + + DIA+L + + T E + L +
Sbjct: 62 -------MVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLD----AHTGECIIALDLL 110
Query: 909 NTEFI-VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ +AL + D + ++ +LK T
Sbjct: 111 GFKHGIIALTRSDS----------------------THMH---AIDELKAKLKVITSGTV 145
Query: 968 LYYKNKDRGETFNIVPTSAISG-----EGIPDLLLLLVQWTQKT-----MVEKLTFRNEL 1017
L + + + + EG+ +L + + +K + L R
Sbjct: 146 L--------QDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPAR--- 194
Query: 1018 QCTVLEVKVIEGHGTTIDVV---LVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKEL 1074
+ + G G VV + G+ + D+ + L +++
Sbjct: 195 -IFIDHAFNVTGKGC---VVLGVVKQGISKDKDKTKIFPLD----------------RDI 234
Query: 1075 RVKGTYLHHKQIKAAQ 1090
++ H I +A
Sbjct: 235 EIRSIQSHDVDIDSAP 250
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGH FT R D A++V+D G+EP+TI+ + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145
Query: 921 R 921
R
Sbjct: 146 R 146
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 921 R 921
R
Sbjct: 146 R 146
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 11/176 (6%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA--PQEEKVQVQ 436
++ K E + + + E+ QE + +I + + A Q+ ++
Sbjct: 829 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 888
Query: 437 PPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET 496
E A + E +A K K + + E ++ + D ++ E
Sbjct: 889 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 948
Query: 497 KKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL 552
N + + A++ + + L E E +++E+L
Sbjct: 949 NYN---------GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 16/208 (7%), Positives = 53/208 (25%), Gaps = 37/208 (17%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
QT K++ P + + + + E ++++
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE----HAEALRIE----------- 869
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
++ + ++ KK + K +
Sbjct: 870 LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI------------------- 910
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ ++ + E + + L + E + E K ++
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL---NYNGVPELTERKDTFFAQQ 967
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAM 595
+ + K + E +++E +
Sbjct: 968 WTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 914
++ DTPGHE +T + G+ CD+AI++VD +G++ QT I +LL +++ +V
Sbjct: 107 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI--ASLLGIKH--IVV 162
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974
A+NK+D L G+ + F I + + +K
Sbjct: 163 AINKMD-LNGFD------------------ERVFE----SIKADYLK--FAEGIAFKPTT 197
Query: 975 RGETFNIVPTSAISGEGI 992
VP SA+ G+ +
Sbjct: 198 ----MAFVPMSALKGDNV 211
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 52.7 bits (125), Expect = 8e-07
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 14/225 (6%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKK 468
LE + + + P+ + + + + + ++
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEH--------STNEADKQNEGEHARE 59
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
+ EK + A A+ ++ ET + +K EK + + E
Sbjct: 60 NKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKE 119
Query: 529 ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
K E + +E + E + + E K EK K+ + + E
Sbjct: 120 TEAKPEATN---QGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP 176
Query: 589 ARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
R + N+ + L + + K A N
Sbjct: 177 GAREDDAINR---GSVVLASRRTGHLVNEKASKEAKVQALSNTNS 218
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 53/186 (28%)
Query: 862 IDTPG-HES-----FTNLRSRGS-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
+DTPG + ++R D ILV D + +NL K F+V
Sbjct: 88 VDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV--VNLFKEMEIPFVV 145
Query: 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974
+NK+D L E+ + Y+++
Sbjct: 146 VVNKID-------------------------------------VLGEKAEELKGLYESRY 168
Query: 975 RGETFNIVPTSAISGEGIPDLLLLLVQW----TQKTMVEKLTFRNELQCTVLEVKVIEGH 1030
+ ++ SA+ +G D+ + + + + L +L V+ + +
Sbjct: 169 EAK---VLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPK 225
Query: 1031 GTTIDV 1036
G I
Sbjct: 226 GRLIMP 231
|
| >1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus} Length = 135 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 1150 GSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1206
GS+EAL L+ + + V++ + ++G + + D+ A+ A ++ F+V+
Sbjct: 52 GSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATA------SNAIVIGFNVRPDA 105
Query: 1207 EARELAEELGVKIFIADIIYHLFD 1230
A+ AE V I + IIY++ +
Sbjct: 106 NAKRAAESEKVDIRLHRIIYNVIE 129
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 6e-06
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
K +K +G+ + + + + KM K EM++ + + + +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK----QEGKLLTGKQK 586
K ++ E L++ E+ K+ E + + E KRR+ E EK ++ Q+ T ++
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Query: 587 EE 588
++
Sbjct: 412 KK 413
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 3e-04
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ K K + K + + K E + + K K +K+
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEK 570
E+Q + K+ E + +E EE+ R+ E+E+ E +R E + R EK K+K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 7e-04
Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
+ + E ++RE +++K E E +++ E++ + + K +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 564 KEKE---KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
E E + + +KK E + + +E+ R+ E + + A+ L + ++ K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHK--ELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK 412
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-05
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
CI+ HVD GK+ L D + ++ G I++ + ++ RER +K A +
Sbjct: 10 CIIAHVDHGKSTLADRL----LEY--TGAISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L +IDTPGH F+ SR C+ A+L++D G+E QT+ +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 908 RNTEFIVALNKVD 920
++ I +NK+D
Sbjct: 124 QDLVIIPVINKID 136
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
++ K+ EM++ +R + +E + +E E+ L ++ + K+L + E++ E K++ +
Sbjct: 332 LGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDD 391
Query: 567 EKEKLLKKKQEGKLL 581
E ++K +LL
Sbjct: 392 EVNAFKQRKTAAELL 406
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 21/123 (17%), Positives = 50/123 (40%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
EE K ++ A + K E + + K E ++ + +E
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
+ E R K+ + +K++ E++ + ++E ++ + AE + + + + LK+ +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 577 EGK 579
E K
Sbjct: 424 EKK 426
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 854
I+ H+D GK+ L D I +Q GG++ ++ A + ++ RER +KA + TL
Sbjct: 8 SIIAHIDHGKSTLSDRI----IQI--CGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 855 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 908 RNTEFIVALNKVD 920
+ E + LNK+D
Sbjct: 122 MDLEVVPVLNKID 134
|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 3e-05
Identities = 28/246 (11%), Positives = 81/246 (32%), Gaps = 6/246 (2%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ + + K + +E++ K+A + + + ++ + + +++M +
Sbjct: 295 RKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERS 354
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ EA EE+ ++ + + E+ + + ++R E E++K +
Sbjct: 355 QANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEI 414
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
+ ++ ++ +Q+ E + E R Q + + AA A
Sbjct: 415 RAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTD 474
Query: 634 AVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESL------TVEEKPEIADAPKEN 687
S+ + ++ ++ E K ++A + E
Sbjct: 475 PDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDET 534
Query: 688 EVEEED 693
+ D
Sbjct: 535 KETAMD 540
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 4e-05
Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 13/192 (6%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A + + + P E Q ++K +P + + +
Sbjct: 402 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 461
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ +E A + + EKEKE + ++ + +S K + E
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIE-------VERVKAESAQASAKMLHEMQRKNE 514
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER--KRLEELERQAEEAKRRKKE 565
+ M ++ R QE L + K + +L KE+E +L+E E+ +E +++
Sbjct: 515 QMMEQKERSYQEHLKQ----LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 570
Query: 566 KEKEKLLKKKQE 577
K ++ + +
Sbjct: 571 IMKNEIQDLQTK 582
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 47/342 (13%), Positives = 99/342 (28%), Gaps = 30/342 (8%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEKEKLLKK 574
E ++ L + E R ++E L + + EE+ + E A + L +
Sbjct: 148 EKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRF 207
Query: 575 KQEGKLLTGKQKEEARRL---EAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ ++ K++ RL + + G L + + + + +
Sbjct: 208 PRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEG 267
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLT-VEEKPEIADAPKENEVE 690
V +ED + + V E VE+G+ L + + + +VE
Sbjct: 268 AFLVLRREDEPVATYFLPVG----MTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVE 323
Query: 691 EEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAAEKPAVA 750
E++ + E + + + R A VA
Sbjct: 324 AEEEGETVY--------------LTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVA 369
Query: 751 VKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKL 810
E +++ V + + + V E + + D GK K
Sbjct: 370 AIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKS 429
Query: 811 LDCIRGTNVQEGEAGGITQQIGATYFP----AENIRERTREL 848
R + + + AE I++ +EL
Sbjct: 430 DVYGRVEVDLVRNV---VRVVESYDIDARMGAEAIQQLLKEL 468
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 38/338 (11%), Positives = 95/338 (28%), Gaps = 29/338 (8%)
Query: 262 NDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIF 321
+ ++ P K + + + A ++ D + + E
Sbjct: 159 RELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVE---- 214
Query: 322 TDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPV----LSDVSGAVDTKQQSGDSSIVESD 377
KK++ + + ++ + P ++ G V+ K+ + +V
Sbjct: 215 YVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRR 274
Query: 378 DFKVNKGEVVA-----QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK 432
+ + + + +K + ++ + + E +
Sbjct: 275 EDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLT 334
Query: 433 VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSE 492
+ ++ EP V E A K + E+E A A +
Sbjct: 335 LFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASIL 394
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE------- 545
V+ + + E +V K + R E + +R
Sbjct: 395 VVKARVYPFEDD-VEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDID 453
Query: 546 --------RKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
++ L+EL+ +A E + ++ K + + K
Sbjct: 454 ARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAK 491
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 801 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 854
GHVD GKT L + G E GI+ ++G T + + L
Sbjct: 15 GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCL 74
Query: 855 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 907
L +D+PGHE+ + S G+ L D AILV+ +PQT E L L+ +
Sbjct: 75 AETEFLRRVSFVDSPGHETLMATMLS-GASLMDGAILVIAANEPCPQPQTKEHLMALEIL 133
Query: 908 RNTEFIVALNKVD 920
+ I+ NK+D
Sbjct: 134 GIDKIIIVQNKID 146
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 801 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 854
GHVD GKT L + G E GIT +IG A N +
Sbjct: 17 GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 76
Query: 855 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 907
+ ID PGHE+ T + + G+ L D AILV+ PQT E L L+ +
Sbjct: 77 HETEFVRRVSFIDAPGHEALMTTMLA-GASLMDGAILVIAANEPCPRPQTREHLMALQII 135
Query: 908 RNTEFIVALNKVD 920
I+A NK++
Sbjct: 136 GQKNIIIAQNKIE 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1324 | ||||
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 2e-40 | |
| d1g7sa3 | 131 | c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, | 6e-32 | |
| d1g7sa1 | 101 | b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, | 3e-29 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 1e-28 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 3e-20 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 9e-19 | |
| d1g7sa2 | 128 | b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, | 4e-18 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 2e-17 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 4e-17 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 3e-16 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 5e-16 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 3e-12 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 3e-11 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 1e-10 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 3e-10 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 7e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 9e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.001 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 5e-05 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 6e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 3e-04 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 3e-04 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 7e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.001 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 7e-04 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.001 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 0.002 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.003 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 147 bits (370), Expect = 2e-40
Identities = 99/222 (44%), Positives = 144/222 (64%), Gaps = 2/222 (0%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 852 ATLKVP--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+++ GL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL 224
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 119 bits (299), Expect = 6e-32
Identities = 47/134 (35%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Query: 1116 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGP 1175
D E V+EE + +++ + +ID GV V+A TLGSLEA+++ L+ V I V+ I G
Sbjct: 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADI--GD 56
Query: 1176 VHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAY 1235
V ++DV+ A + L++ + Y I+AF+VKV P A + + +K+F ++IY L +++ +
Sbjct: 57 VSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEW 116
Query: 1236 INNLKEEKKREAAD 1249
+ ++EEKK++ +
Sbjct: 117 VRGIEEEKKKKWME 130
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 110 bits (276), Expect = 3e-29
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-V 1076
+ T+LEVK G G TID V+ +G+L + D I + + I T IR+LL P P++E+R
Sbjct: 6 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRES 65
Query: 1077 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111
+ + ++ AA GIKI A G++ +AG+ L VV
Sbjct: 66 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVV 100
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 113 bits (283), Expect = 1e-28
Identities = 38/250 (15%), Positives = 67/250 (26%), Gaps = 56/250 (22%)
Query: 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP------------------ 837
I +G +GKT L + + G P
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 838 ----------------AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 881
E E ++ K ++IDTPG G L
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 882 D-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNA 931
+ + + + D +P + + I ALNKVD L + R+
Sbjct: 120 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
+ I ++ + + M ++ + ++ SA + EG
Sbjct: 180 KYFEDIDYLTARLKLD----------PSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 229
Query: 992 IPDLLLLLVQ 1001
DL L +
Sbjct: 230 FEDLETLAYE 239
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 88.1 bits (218), Expect = 3e-20
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 34/142 (23%)
Query: 798 CIMGHVDTGKTKLLDCI-----------------RGTNVQEGEAGGITQQIGATYFPAEN 840
+GHVD GKT L + E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 841 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+D PGH + G+ D AILVV G PQT E
Sbjct: 67 RH----------------YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 110
Query: 901 SLNLLKMRNTEFIV-ALNKVDR 921
+ L + +IV +NKVD
Sbjct: 111 HILLARQVGVPYIVVFMNKVDM 132
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 85.9 bits (212), Expect = 9e-19
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
I H+D GKT + I + + G + + F + RER + A T
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQE-RERGITITAAVTTCFW 68
Query: 858 G---LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
+ +ID PGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 915 ALNKVDRLY 923
NK+D+
Sbjct: 129 FANKMDKTG 137
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 79.8 bits (197), Expect = 4e-18
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPV 1311
+ P ++++P VF + P + GV+V+ G+ + G P+ D +G + S+++ + +
Sbjct: 2 IKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMND--DGETVGTVESMQDKGENL 59
Query: 1312 DTAKKGQKAAIKV 1324
+A +GQK A+ +
Sbjct: 60 KSASRGQKVAMAI 72
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (204), Expect = 2e-17
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 798 CIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGATYFPAENI 841
++ HVD GK+ L D + R + +AG GIT + A +E
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 901
E +E+K + +ID+PGH F++ + + D A++VVD + G+ QT
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 902 LNLLKMRNTEFIVALNKVDRLYGW 925
L + +V +NKVDR
Sbjct: 141 LRQALGERIKPVVVINKVDRALLE 164
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.5 bits (195), Expect = 4e-17
Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 34/229 (14%)
Query: 798 CIMGHVDTGKTKLLDCI------------RGTNVQEGEAGGITQQIGATYFPAENIRERT 845
++GHVD GK+ L+ + + + G +++ + RER
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 846 RELKANAT---LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
+ K +ID PGH F G+ D AILVV G +
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-- 124
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
T + L KT ++ A+ + + R +IV Q+ +
Sbjct: 125 ---VEGQTREHIIL--------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
VP A SG+ I + + T+ E L
Sbjct: 174 ------MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL 216
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 76.8 bits (188), Expect = 3e-16
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 798 CIMGHVDTGKTKLLDCI----------------RGTNVQEGEAGGITQQIGATYFPAENI 841
G+VD GK+ L+ + R + + + AE
Sbjct: 13 LTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAERE 72
Query: 842 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
+ T ++ + DTPGHE +T + G+ CD+AI++VD +G++ QT
Sbjct: 73 QGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR 132
Query: 901 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ + + IV L G+ I + + +
Sbjct: 133 HSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK------------- 179
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1011
T VP SA+ G+ + + + ++++E L
Sbjct: 180 ---------------PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL 215
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 75.5 bits (185), Expect = 5e-16
Identities = 44/226 (19%), Positives = 64/226 (28%), Gaps = 73/226 (32%)
Query: 798 CIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENI 841
+GHVD GKT L I N E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 901
D PGH + G+ D ILVV G PQT E
Sbjct: 67 H----------------YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH 110
Query: 902 LNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
L L + + +V +NK D + + + + +++
Sbjct: 111 LLLARQIGVEHVVVYVNKAD------------------------AVQDSEMVELVELEIR 146
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLL 996
E +GE I+ SA+ + + LL
Sbjct: 147 ELLTEFGY------KGEETPIIVGSALCALEQRDPELGLKSVQKLL 186
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.8 bits (160), Expect = 3e-12
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 799 IMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAENIRE-RTREL 848
++GHVD+GK+ + R E EA + + + + ++ R R +
Sbjct: 11 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGI 70
Query: 849 KANATLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEP 896
+ L + VID PGH F G+ D AIL++ G +
Sbjct: 71 TIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG 130
Query: 897 QTIESLNLLKMRNT-EFIVALNKVDR 921
QT E L + IVA+NK+D
Sbjct: 131 QTREHALLAFTLGVRQLIVAVNKMDS 156
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 61.9 bits (149), Expect = 3e-11
Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 50/222 (22%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEG----------EAGGITQQIGATYFPAENIRERT-- 845
++GHVD GKT L+ I G + + G IG + T
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 846 ---RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES- 901
+ + + ID PGHE G+ L D AILVV
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 902 -LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960
+ L + I+ NKVD + + +Q
Sbjct: 132 FVALGIIGVKNLIIVQNKVDV-------VSKEEALSQYRQIKQFTKGTW----------- 173
Query: 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
E I+P SA+ I L+ + ++
Sbjct: 174 ---------------AENVPIIPVSALHKINIDSLIEGIEEY 200
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 60.0 bits (144), Expect = 1e-10
Identities = 41/215 (19%), Positives = 63/215 (29%), Gaps = 41/215 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854
++GHVD GKT L + G E GIT +IG R +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 855 KV-------PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+ ID PGHE+ G+ L D AILV+ +
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-- 126
Query: 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 967
+ I+ A + + + QI ++
Sbjct: 127 -----------------LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV---- 165
Query: 968 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
E I+P SA+ G I L+ + +
Sbjct: 166 --------AENAPIIPISALHGANIDVLVKAIEDF 192
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 60.3 bits (145), Expect = 3e-10
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-YFPAENIRERTRELKANATLKV 856
++GH +GKT L + + + G + + T Y P + T L
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 857 PGLLVI-DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915
+ + D PG+ F D A++ V G++ T + + + +V
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 916 LNKVDRLYGWKTCRN 930
+ K+D+ +
Sbjct: 126 VTKLDKGGDYYALLE 140
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 59.5 bits (143), Expect = 5e-10
Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 32/214 (14%)
Query: 798 CIMGHVDTGKTKLLDCI---------RGTNVQEGEA---GGITQQIGATYFPAENIRERT 845
+GHVD GK+ L I R E EA G + + RE+
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 846 RELKANATLK---VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
+ ++ ++D PGH+ + G+ DI +LV+ G E
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 903 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
+ R + ++ L + P V+ +++ + ++ +M L ++
Sbjct: 148 G--QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA------ 199
Query: 963 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996
+ +P SA +G+ + D +
Sbjct: 200 ---------GYNSKTDVKYMPVSAYTGQNVKDRV 224
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 43.1 bits (100), Expect = 5e-05
Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 44/203 (21%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
I+G + GK+ L + I + I T E + + +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERA------LVSPIPGTTRD-PVDDEVFIDGRKYVFVDTA 64
Query: 858 GLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 913
GL V + D+ ++V+D G+ Q L++ R +
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124
Query: 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 973
V NK D + + + T+L+ +
Sbjct: 125 VVFNKWDLVVHREKRYD---------------------------------EFTKLFREKL 151
Query: 974 DRGETFNIVPTSAISGEGIPDLL 996
+ ++ TSA G I ++
Sbjct: 152 YFIDYSPLIFTSADKGWNIDRMI 174
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 40/210 (19%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
G + GK+ L+ + G V+ G+ G+T++I + I + K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 858 GLLVIDTPGHESFTNLRSR------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
+ D H N ++ G I+ G P +E L+ +
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 912 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 971
IVA+NK+D++ + N ++
Sbjct: 124 TIVAVNKLDKIKNVQEVINF----------------------------------LAEKFE 149
Query: 972 NKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001
+P SA G+ I L + +
Sbjct: 150 VPLSEIDKVFIPISAKFGDNIERLKNRIFE 179
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (101), Expect = 1e-04
Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 35/250 (14%)
Query: 757 EQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENL-RSPI-CCIMGHVDTGKTKLLDCI 814
+ + SQ+ + + ++ A + + S + + G +GK+ ++ +
Sbjct: 17 GRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL 76
Query: 815 RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---T 871
RG +E A + E T E +P ++ D PG S
Sbjct: 77 RGIGNEEEGA------------AKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP 124
Query: 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931
+ + ++ + I+ + M EF KVD
Sbjct: 125 DTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI-------- 176
Query: 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 991
+ Q D + + V +E G+ + ++ +
Sbjct: 177 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF----------LLSNKNVCHYD 226
Query: 992 IPDLLLLLVQ 1001
P L+ L+
Sbjct: 227 FPVLMDKLIS 236
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 2e-04
Identities = 23/146 (15%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
++ KKK ++ ++ + ++ ++A+ K E ++ +
Sbjct: 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 210
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
E +A A+ +RK + E+ + +E + E+ + + KE+E+ L
Sbjct: 211 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT-EKMENDRVQLLKEQERTLAL 269
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQ 598
K +++ +LL ++E+R ++
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+E A + + EKEKE + A + K +KN+ + E+ +
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 243
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
++++ E + + +++ +E+E + L+E ++ + + + + K+
Sbjct: 244 HLKQLTEKMENDRVQLLKEQERTLALKLQEQE--QLLKEGFQKESRIMKNEIQDLQTKM 300
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 0.001
Identities = 22/151 (14%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+E+V + + +K + K+K ++ +++K++ +
Sbjct: 136 EEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQT 195
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ + + E + E+ + + E RK E+ ++ E ++ + K E +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
+ +LLK+++ L K +E+ + L+ +
Sbjct: 256 RVQLLKEQER--TLALKLQEQEQLLKEGFQK 284
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G+ TGK+ LL I ++ + ++ + K
Sbjct: 8 FLVIGNAGTGKSCLLHQF------------IEKKFKDDSNHTIGVEFGSKIINVGG--KY 53
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F ++ A+LV DI E AL
Sbjct: 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS-----------------RETYNAL 96
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+N I+ L L T L +
Sbjct: 97 TNWLTDARMLASQNIVII-----------------LCGNKKDLDADREVTFLEASRFAQE 139
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ TSA++GE + + + +
Sbjct: 140 NELMFLETSALTGENVEEAFVQCAR 164
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 21/224 (9%), Positives = 50/224 (22%), Gaps = 43/224 (19%)
Query: 779 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 838
P++ P G + GK+ L+ + + + F
Sbjct: 6 PDIRHLPS-----DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 839 ENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ + + + R ++++DI H L+
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS----LQGLVVLMDIRHPLKDLD 116
Query: 899 IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQ 958
+ + + KA K + + + N
Sbjct: 117 QQMIEWAVD-----------------SNIAVLVLLTKADKLASGARKAQLN--------- 150
Query: 959 LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
+ + S++ +G+ L L W
Sbjct: 151 --------MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 186
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 41/205 (20%)
Query: 798 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857
I GH+D GKT L + I P R T
Sbjct: 9 GIFGHIDHGKTTLSKVLT----------EIASTSAHDKLPESQKRGITI----------- 47
Query: 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALN 917
F+ + + + + + ++L +
Sbjct: 48 ---------DIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 98
Query: 918 KVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGE 977
+ N PI+ I + + + E R I+ + + N +
Sbjct: 99 QTGEHMLILDHFNIPIIVVITKSD-NAGTEEIKRTEMIMKSILQSTHN----------LK 147
Query: 978 TFNIVPTSAISGEGIPDLLLLLVQW 1002
+I+P SA +G G+ +L L++
Sbjct: 148 NSSIIPISAKTGFGVDELKNLIITT 172
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-04
Identities = 25/205 (12%), Positives = 45/205 (21%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
I+G GK+ LL A I + + +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK------------ 57
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F L ILV D+
Sbjct: 58 --LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT------------------------- 90
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ + + + + V + + +
Sbjct: 91 RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML----- 145
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ SA + +G+ LV+
Sbjct: 146 ----FIEASAKTCDGVQCAFEELVE 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G GKT +L I + R +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK------------ 56
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E F + + +LV DI + +S + ++
Sbjct: 57 --LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE------KSFDNIRNWIRNIE--- 105
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ + + + + + + + KE+G L Y K
Sbjct: 106 --------EHASADVEKMILGNKCDVNDKRQVS----------KERGEKLALDYGIK--- 144
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
+ TSA + + + L +
Sbjct: 145 ----FMETSAKANINVENAFFTLAR 165
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.1 bits (91), Expect = 7e-04
Identities = 16/101 (15%), Positives = 43/101 (42%)
Query: 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE 526
++++ E+ AAE++++ + + + + E +++
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 527 AEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++ + +E R +RL+E ++ AEE ++ K+ KE
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.7 bits (90), Expect = 0.001
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
DG + ++ ++E + + AEER+K +E E L+ E+R+ E+ ++A E
Sbjct: 27 DGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE 86
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
+ KEKL +K + K
Sbjct: 87 NNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.7 bits (91), Expect = 7e-04
Identities = 26/213 (12%), Positives = 45/213 (21%), Gaps = 45/213 (21%)
Query: 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 849
E S I+G + GK+ LL+ + G V T + E R+
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
E + + VVD+ H +
Sbjct: 61 PGLH-------KPMDALGEFMDQEVYEALADVNAVVWVVDLRHP-----------PTPED 102
Query: 910 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 969
AL + N ++ +E
Sbjct: 103 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPE------------------ 144
Query: 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002
SA+ + +L L+
Sbjct: 145 ---------AEPRMLSALDERQVAELKADLLAL 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (89), Expect = 0.001
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 49/211 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G GK+ LL I +I + +L+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQ------- 54
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
+ DT G E F + + ILV DI
Sbjct: 55 ----IWDTAGQERFRTITTAYYRGAMGIILVYDITD------------------------ 86
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+T N I + K N +E + LV + ++ + + + + +
Sbjct: 87 --------ERTFTN--IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-QGEALAKE 135
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007
+ +SA + + + ++ L + Q+ +
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.7 bits (89), Expect = 0.002
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 48/205 (23%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
I+G+ GKT L + F + I + +K
Sbjct: 8 ILIIGNSSVGKTSFLFRYA-----DDSFTPAFVSTVGIDFKVKTIYRNDKRIK------- 55
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916
L + DT G E + + + IL+ DI + F
Sbjct: 56 --LQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------------EESFNAVQ 97
Query: 917 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 976
+ ++ + ++ K D + + R Q+ L
Sbjct: 98 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------------- 141
Query: 977 ETFNIVPTSAISGEGIPDLLLLLVQ 1001
F SA + LV
Sbjct: 142 --FEFFEASAKDNINVKQTFERLVD 164
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (88), Expect = 0.003
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856
++G+ GK+ LL Y + + + ++ + K
Sbjct: 9 LLLIGNSGVGKSCLLLRF------------SDDTYTNDYISTIGVDFKIKTVELDG--KT 54
Query: 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN------------- 903
L + DT G E F + S I+V D+ ++
Sbjct: 55 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 114
Query: 904 -LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 962
L+ + + + D + P ++ +T+V++ F + + + + Q
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL-TMARQIKESMSQ 173
Query: 963 GMNTELYYKNKDRG 976
E K +D+G
Sbjct: 174 QNLNETTQKKEDKG 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1324 | |||
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 100.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.95 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.95 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.95 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.95 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.94 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.94 | |
| d1g7sa3 | 131 | Initiation factor IF2/eIF5b, domain 3 {Archaeon Me | 99.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.93 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.93 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.81 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.79 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.78 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.77 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.77 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.73 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.73 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.72 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.7 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.68 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.67 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.67 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.66 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.65 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.65 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.64 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.63 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.63 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.62 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.62 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.6 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.59 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.59 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.56 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.56 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.55 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.55 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.53 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.53 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.52 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.52 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.46 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.46 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.36 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.31 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.23 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 99.18 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.13 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.04 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.0 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.91 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.86 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.3 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.28 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.13 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 98.11 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 98.07 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.0 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.97 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.97 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 97.95 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 97.92 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 97.91 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.82 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.8 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.79 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.54 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 97.49 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.46 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.41 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 97.36 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 97.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.18 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.16 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 97.06 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 97.03 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 96.82 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.57 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 96.32 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 96.2 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 96.15 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.88 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.68 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.48 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 95.33 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 95.22 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.17 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 95.11 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 95.06 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 94.84 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 94.63 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 94.52 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 94.52 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 94.43 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 94.11 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 93.92 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 93.79 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.59 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.41 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.02 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 92.8 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.54 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.09 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 91.78 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.09 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 90.18 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.03 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.62 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 89.54 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 89.43 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.41 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 89.26 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 88.74 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 88.11 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 88.09 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 88.07 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 87.93 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 87.85 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 87.81 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 87.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.72 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 87.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.68 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 87.4 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 87.37 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 87.36 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 87.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 87.35 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.33 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.22 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 87.19 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.86 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 86.79 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 86.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.64 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.37 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.27 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.24 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 86.21 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 86.19 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 86.18 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 86.13 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 86.01 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 85.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 85.94 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 85.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.1 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 84.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.39 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 84.17 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 83.91 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 83.76 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 83.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 83.38 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.23 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 83.23 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.21 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 82.98 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 82.62 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 82.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 81.62 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 80.94 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 80.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.76 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 80.11 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=3.2e-35 Score=273.89 Aligned_cols=222 Identities=45% Similarity=0.786 Sum_probs=195.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCC--CCCCCCCCEEEEECCCCC
Q ss_conf 799979999908999878999999839643555575036520367113320000111013--434567979999199984
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~--~~~~~~~~i~iIDTPGHe 868 (1324)
.+|+|+|||+||+|||||||+++|++.++...+.+++|..++...++.+.....+..... ...+...+++|||||||.
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 98998799996998549999999982366001457454531531232101223444332100110111342234641100
Q ss_pred CHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11456640267665017862334688677899999987049937998401344357654788128999998759999999
Q 000735 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 869 ~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
+|...+.+++..||++|||||+.+|+++||.++|.++...++|+|||+||||++..|.......+...+..+...++..+
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred CCCCCCHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 00011100012464589998612376320257777764379759999989307881455446788875420308889899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999998178313331124789840399478766899015899999997786875420
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l~ 1012 (1324)
...+......+...++....|+...+|...++++|+||++|.||++|+..|..+.+..|.+.|.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~l~ 225 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK 225 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998665666512310015777499934898989999999999999999998646
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.95 E-value=4.3e-28 Score=221.06 Aligned_cols=163 Identities=28% Similarity=0.345 Sum_probs=124.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC----------------CCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 79999908999878999999839----------------64355557503652036711332000011101343456797
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~ 858 (1324)
++|+|+||+|||||||+++|++. .......+|||+..+.+++.+.. +.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~----------------~~ 67 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA----------------RH 67 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS----------------CE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECE----------------EE
T ss_conf 18999958898099999999999987376125565410465655078841772369998121----------------56
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 9999199984114566402676650178623346886778999999870499-379984013443576547881289999
Q 000735 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 859 i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~i-PiIVviNKiD~~~~w~~~~~adi~~~L 937 (1324)
++|||||||.+|..++.++++.+|++|||||+..|+++||+++|.++..+++ |+|||+||||+... ...
T Consensus 68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~------~~~---- 137 (196)
T d1d2ea3 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD------SEM---- 137 (196)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC------HHH----
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------HHH----
T ss_conf 8752373167789999998754376799998688876348999999998558848999855656660------878----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC----------CCHHHHHHHHHHHH
Q ss_conf 9875999999989899999999981783133311247898403994787668----------99015899999997
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLLLLLVQWT 1003 (1324)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tG----------eGI~eLl~~L~~l~ 1003 (1324)
|......+...|...|++. ..+|++|+||++| .|++.||+.|..+.
T Consensus 138 ----------~~~i~~~i~~~l~~~~~~~----------~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 138 ----------VELVELEIRELLTEFGYKG----------EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp ----------HHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHHHHHCCCC----------CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf ----------9999999999999719995----------5587999894526465684446378899999998518
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.95 E-value=6e-28 Score=219.96 Aligned_cols=186 Identities=23% Similarity=0.341 Sum_probs=121.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCC---------CCCCCEEEEEEEEEECCC---CCCCHHHHCCC---CCCCCCCC
Q ss_conf 99999089998789999998396--435---------555750365203671133---20000111013---43456797
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTN--VQE---------GEAGGITQQIGATYFPAE---NIRERTRELKA---NATLKVPG 858 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~---------geagGITq~iga~~~~~e---~i~~~~~~i~~---~~~~~~~~ 858 (1324)
.|+|+||||||||||+++|++.. +.. ....|.+.....+.+.++ ..+.+...+.. ...+..+.
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 90 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRK 90 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCEE
T ss_conf 59999378989899999999986983567889999889862865441221001464134431587731557898415237
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 99991999841145664026766501786233468867789999998704993-79984013443576547881289999
Q 000735 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 859 i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iP-iIVviNKiD~~~~w~~~~~adi~~~L 937 (1324)
++|||||||.+|...+.++++.+|++|||||+..|+++||++++.++..++++ +||++||||++ +|..
T Consensus 91 ~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~-~~~~---------- 159 (222)
T d1zunb3 91 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN-GFDE---------- 159 (222)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT-TSCH----------
T ss_pred EEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC-CCCC----------
T ss_conf 99981663255433321466557668987204567663338999999983998799998700145-5520----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9875999999989899999999981783133311247898403994787668990158999999977868754
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1010 (1324)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~ 1010 (1324)
..|......+...+...+++ ...++|||+||++|+||.+....+.||-.+.+++.
T Consensus 160 --------~~~~~~~~~l~~~~~~~~~~----------~~~i~~IPiSA~~G~ni~~~s~~~~wy~g~tl~e~ 214 (222)
T d1zunb3 160 --------RVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI 214 (222)
T ss_dssp --------HHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH
T ss_pred --------EEHHHHHHHHHHHHHHHCCC----------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf --------00035677776556752048----------99608999775467468757536897768829999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.5e-27 Score=215.38 Aligned_cols=143 Identities=26% Similarity=0.280 Sum_probs=107.1
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE-EEEEECCCCCCCHHHHCCC-CCCCCCCCEEEEECC
Q ss_conf 43479997999990899987899999983964355557503652-0367113320000111013-434567979999199
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELKA-NATLKVPGLLVIDTP 865 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~i-ga~~~~~e~i~~~~~~i~~-~~~~~~~~i~iIDTP 865 (1324)
...++|| |+|+||+|+|||||+++|+...-.....|.+.... ...+.+.+..+..++.... ...|+...|+|||||
T Consensus 2 ~~~~iRn--i~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtP 79 (276)
T d2bv3a2 2 DLKRLRN--IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAP 79 (276)
T ss_dssp CGGGEEE--EEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCC
T ss_pred CHHHCEE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCC
T ss_conf 7302029--99995898998999999999648534023365184698565888751886001123431598389995278
Q ss_pred CCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98411456640267665017862334688677899999987049937998401344357654788128999998
Q 000735 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 866 GHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~ 939 (1324)
||.+|...+.++++.+|++|||||+.+|+++||...|+++..+++|+|++|||||+. +++|...+.+
T Consensus 80 G~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~-------~ad~~~~l~e 146 (276)
T d2bv3a2 80 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT-------GADLWLVIRT 146 (276)
T ss_dssp SSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTST-------TCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCCCHHHHH
T ss_conf 602269999999996300577322567744669999999998599979998644565-------4312126899
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=4.1e-27 Score=213.74 Aligned_cols=149 Identities=26% Similarity=0.345 Sum_probs=111.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-----------------CCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCC
Q ss_conf 7999990899987899999983964-----------------35555750365203671133200001110134345679
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNV-----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-----------------~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~ 857 (1324)
++|+|+||+|||||||+++|++..- .....+|||++++...+.++ ..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~----------------~~ 67 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA----------------KR 67 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------------SC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEEC----------------CE
T ss_conf 19999947898499999999998523047741135431134557755875798437999708----------------81
Q ss_pred CEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 799991999841145664026766501786233468867789999998704993-7998401344357654788128999
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1324)
Q Consensus 858 ~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iP-iIVviNKiD~~~~w~~~~~adi~~~ 936 (1324)
.++|||||||.+|...+.++++.+|++|||||+.+|+++||.++|.++..+++| +||++||||++.. .
T Consensus 68 ~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~------~----- 136 (204)
T d2c78a3 68 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD------P----- 136 (204)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC------H-----
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------H-----
T ss_conf 89998289826549999999987899999998999984789999999998599938999985366798------8-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99875999999989899999999981783133311247898403994787668
Q 000735 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1324)
Q Consensus 937 L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tG 989 (1324)
..|......+...+...++. ...++++++||+.|
T Consensus 137 ---------~~~~~~~~~i~~~l~~~~~~----------~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 137 ---------ELLDLVEMEVRDLLNQYEFP----------GDEVPVIRGSALLA 170 (204)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECHHH
T ss_conf ---------99999999999998744999----------65423400232244
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.5e-27 Score=214.26 Aligned_cols=157 Identities=28% Similarity=0.395 Sum_probs=120.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC--C-----------------------------CCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 799999089998789999998396--4-----------------------------355557503652036711332000
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIRE 843 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~--v-----------------------------~~geagGITq~iga~~~~~e~i~~ 843 (1324)
.+|+|+||||||||||+++|++.. + .....+|||++++..++.+..
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--- 83 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 83 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS---
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEECCCC---
T ss_conf 47999947899899999999998189668899999999998368764200003530243224001244204762499---
Q ss_pred HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCC-------CCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 01110134345679799991999841145664026766501786233468-------867789999998704993-7998
Q 000735 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE-FIVA 915 (1324)
Q Consensus 844 ~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~G-------v~~QT~E~l~lL~~~~iP-iIVv 915 (1324)
+.|+|||||||.+|..++.++++.+|+||||||+..| +++||.++|.++..+++| +|||
T Consensus 84 -------------~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~ 150 (239)
T d1f60a3 84 -------------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 150 (239)
T ss_dssp -------------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred -------------EEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------------8999998989688899999999975889999989988541455731769999999998499808999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 40134435765478812899999875999999989899999999981783133311247898403994787668990158
Q 000735 916 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1324)
Q Consensus 916 iNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eL 995 (1324)
+||||++. |. ..+|......+...+...+++. ..++++|+||.+|+|+.+.
T Consensus 151 iNKmD~~~-~d------------------~~~~~~~~~el~~~l~~~~~~~----------~~i~~ipiSa~~G~ni~~~ 201 (239)
T d1f60a3 151 VNKMDSVK-WD------------------ESRFQEIVKETSNFIKKVGYNP----------KTVPFVPISGWNGDNMIEA 201 (239)
T ss_dssp EECGGGGT-TC------------------HHHHHHHHHHHHHHHHHHTCCG----------GGCCEEECCTTTCBTTTBC
T ss_pred EECCCCCC-CC------------------HHHHHHHHHHHHHHHHHCCCCC----------CCEEEEEEECCCCCCCEEC
T ss_conf 98887888-88------------------8999999998999997418998----------8179999885477765521
Q ss_pred H
Q ss_conf 9
Q 000735 996 L 996 (1324)
Q Consensus 996 l 996 (1324)
.
T Consensus 202 s 202 (239)
T d1f60a3 202 T 202 (239)
T ss_dssp C
T ss_pred C
T ss_conf 4
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.94 E-value=2.2e-26 Score=208.33 Aligned_cols=129 Identities=18% Similarity=0.294 Sum_probs=94.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEE-EEEECCCCCCCHHHHCCC-CCCCCCCCEEEEECCCCCC
Q ss_conf 99979999908999878999999839643555575036520-367113320000111013-4345679799991999841
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-ATYFPAENIRERTRELKA-NATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~ig-a~~~~~e~i~~~~~~i~~-~~~~~~~~i~iIDTPGHe~ 869 (1324)
+|| |+|+||+|||||||+++|++..-.....|.+..... ..+.+.+..+..++.... ...|+...++|||||||.+
T Consensus 2 iRN--v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d 79 (267)
T d2dy1a2 2 IRT--VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 79 (267)
T ss_dssp EEE--EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred EEE--EEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHH
T ss_conf 509--999948898099999999997097553066222211356269888738768751022223432106880681554
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 14566402676650178623346886778999999870499379984013443
Q 000735 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 870 F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~ 922 (1324)
|...+.++++.+|++|||||+.+|+++||..+|+++..+++|+||++||||+.
T Consensus 80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 33556543124673389842357742115788776554044310133320222
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=1.4e-26 Score=209.77 Aligned_cols=178 Identities=27% Similarity=0.310 Sum_probs=118.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCEEEEEEEEEECC----CCCCCHHHHCCC--------CCCCCCCCE
Q ss_conf 79999908999878999999839643---555575036520367113----320000111013--------434567979
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPA----ENIRERTRELKA--------NATLKVPGL 859 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~----e~i~~~~~~i~~--------~~~~~~~~i 859 (1324)
++|+|+||||||||||+++|++.... .....+++...+...... .....+...... ........+
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 88 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 88 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCEEEE
T ss_conf 08999972488699999999704121228898760221036134335656654332025411342344331025643788
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 99919998411456640267665017862334688-6778999999870499-379984013443576547881289999
Q 000735 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 860 ~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-~~QT~E~l~lL~~~~i-PiIVviNKiD~~~~w~~~~~adi~~~L 937 (1324)
+|||||||.+|...+.+++..||++|||||+.+|+ +.||.+++.++..+++ |+||++||||++.. ..
T Consensus 89 ~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~-------~~---- 157 (205)
T d2qn6a3 89 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-------EE---- 157 (205)
T ss_dssp EEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCH-------HH----
T ss_pred EEECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-------HH----
T ss_conf 9842613888876401425026644200000140133267899999998198326541456787651-------47----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98759999999898999999999817831333112478984039947876689901589999999778
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
+......+...+... +...++++|+||++|.||++|+..|.++++.
T Consensus 158 ----------~~~~~~~~~~~l~~~------------~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 158 ----------ALSQYRQIKQFTKGT------------WAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp ----------HHHHHHHHHHHHTTS------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ----------HHHHHHHHHHHHCCC------------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf ----------899999999985311------------6898869997678887849999988852899
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.94 E-value=2e-26 Score=208.68 Aligned_cols=177 Identities=29% Similarity=0.307 Sum_probs=127.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCCCCCEEEEEEEEEECCCCCCCHHHHC-CCC------CCCCCCCEEEEEC
Q ss_conf 799999089998789999998396---435555750365203671133200001110-134------3456797999919
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTREL-KAN------ATLKVPGLLVIDT 864 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~e~i~~~~~~i-~~~------~~~~~~~i~iIDT 864 (1324)
.+|+|+||+|||||||+++|++.. ......+|+|+.++..++.+.......... ... .......++||||
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 85 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEECC
T ss_conf 79999934588499999999703446668999717653334212223135302103422566554102057504765243
Q ss_pred CCCCCHHHHHHHCCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998411456640267665017862334688-67789999998704993-7998401344357654788128999998759
Q 000735 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 865 PGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-~~QT~E~l~lL~~~~iP-iIVviNKiD~~~~w~~~~~adi~~~L~~q~~ 942 (1324)
|||.+|...+.++++.+|++|||||+..|+ .+||.+++.++...++| +|||+||||+... ..
T Consensus 86 PGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~-------~~--------- 149 (195)
T d1kk1a3 86 PGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-------EK--------- 149 (195)
T ss_dssp SSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-------HH---------
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-------HH---------
T ss_conf 10355667765332222331000011356665316799999998237552345412330246-------88---------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999989899999999981783133311247898403994787668990158999999977
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 943 ~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
+...+..+...+...+ ...+++||+||++|+||+.|+..|..++|
T Consensus 150 -----~~~~~~~~~~~~~~~~------------~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 150 -----ALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp -----HHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHHHHCCCC------------CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf -----8879999999963004------------79886999877889798999999897780
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.93 E-value=1.6e-26 Score=209.48 Aligned_cols=128 Identities=35% Similarity=0.699 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 18999999999899998642003884499708846599999872359812337785508454212888974200024673
Q 000735 1116 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYA 1195 (1324)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAi~~~L~~~~~~i~v~~~~iG~V~~~DV~~A~~~~~~~~~~a 1195 (1324)
|.+.++++++.++.++ .+++...||||||||+||||||+.+|.. ++|||++++|||||++||++|+++..+++.||
T Consensus 1 d~e~~~~~~~~e~~~~--~i~~~~~~viiKaDt~GSlEAi~~~L~~--~~i~i~~~~VG~it~~DV~~A~~~~~~~~~~a 76 (131)
T d1g7sa3 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYG 76 (131)
T ss_dssp SHHHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHHHHHTTCTTSC
T ss_pred CHHHHHHHHHHHHHHC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--CCCEEEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 9789999999998734--4554443789981884639999999973--57516886574664516889987421476671
Q ss_pred EEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998089999779999998098099823377799999999823346777763
Q 000735 1196 TILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA 1247 (1324)
Q Consensus 1196 ~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~ 1247 (1324)
+||||||++++.+..+|++.||+|++|+|||||+|+|+.||.+++++.+.+.
T Consensus 77 ~IlgFnV~~~~~a~~~a~~~~V~i~~~~IIY~Lid~~~~~~~~~~~~~~~e~ 128 (131)
T d1g7sa3 77 AIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKW 128 (131)
T ss_dssp EEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8999851469216899986298389808063389999999975657177786
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.93 E-value=8.1e-27 Score=211.58 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=119.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCC----------CCCCCEEEEEEEEEECCCCCCCHHHHCCC---CCCCCCCCE
Q ss_conf 799999089998789999998396--435----------55575036520367113320000111013---434567979
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN--VQE----------GEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGL 859 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~--v~~----------geagGITq~iga~~~~~e~i~~~~~~i~~---~~~~~~~~i 859 (1324)
++||||||||||||||+++|++.. +.. ...+.....+..........+.+...+.. ...+..+.+
T Consensus 25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 104 (245)
T d1r5ba3 25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 104 (245)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 49999952798999999999998499458899999988774277542113443023311246865544422121133103
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCCC-CCCCCCC
Q ss_conf 999199984114566402676650178623346886-------7789999998704993-799840134435-7654788
Q 000735 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FIVALNKVDRLY-GWKTCRN 930 (1324)
Q Consensus 860 ~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~-------~QT~E~l~lL~~~~iP-iIVviNKiD~~~-~w~~~~~ 930 (1324)
+|||||||.+|..++.++++.+|++|||||+++|+. +||.+++.++..+++| +||++||||+.. .|...
T Consensus 105 ~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~-- 182 (245)
T d1r5ba3 105 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE-- 182 (245)
T ss_dssp EECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH--
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH--
T ss_conf 554255554423666521443030046787477766776533202299999999859995999997688775312178--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHH--HHHHHHHH
Q ss_conf 12899999875999999989899999999981-7831333112478984039947876689901589999--99977868
Q 000735 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL--VQWTQKTM 1007 (1324)
Q Consensus 931 adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~-Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L--~~l~~~~l 1007 (1324)
.|...+..+...+... +++. ...++|||+||++|+||.+++... .||-.+.+
T Consensus 183 ----------------~~~ei~~~l~~~l~~i~~~~~---------~~~v~~VPiSA~~G~nI~~~~~s~~~~wy~G~tl 237 (245)
T d1r5ba3 183 ----------------RYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSL 237 (245)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCH
T ss_pred ----------------HHHHHHHHHHHHHHHHHCCCC---------CCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCHH
T ss_conf ----------------899999999999999837576---------5688799946667879512100447888888659
Q ss_pred HHHH
Q ss_conf 7542
Q 000735 1008 VEKL 1011 (1324)
Q Consensus 1008 ~e~l 1011 (1324)
++.|
T Consensus 238 ~~~l 241 (245)
T d1r5ba3 238 LEYL 241 (245)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9997
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=2.1e-26 Score=208.49 Aligned_cols=179 Identities=27% Similarity=0.313 Sum_probs=114.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC-----CC-------CCCEEEEEE--EEEECCCCCCCHHHHCC-CCCCCCCCCE
Q ss_conf 799999089998789999998396435-----55-------575036520--36711332000011101-3434567979
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-----GE-------AGGITQQIG--ATYFPAENIRERTRELK-ANATLKVPGL 859 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~-----ge-------agGITq~ig--a~~~~~e~i~~~~~~i~-~~~~~~~~~i 859 (1324)
++|||+||+|||||||+++|++..-.. .+ .+..+.... ..+.+.+..+..+.... ....+..+.|
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCEE
T ss_conf 18999944799999999999998598328899999998875176655542014573344147765242179995188126
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCC-CCCCCCC
Q ss_conf 99919998411456640267665017862334688-------67789999998704993-799840134435-7654788
Q 000735 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVDRLY-GWKTCRN 930 (1324)
Q Consensus 860 ~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-------~~QT~E~l~lL~~~~iP-iIVviNKiD~~~-~w~~~~~ 930 (1324)
+|||||||.+|+.++.++++.||+||||||+.+|+ ++||.+++.++..++++ +||++||||+.. .|..
T Consensus 84 ~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~--- 160 (224)
T d1jnya3 84 TIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE--- 160 (224)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH---
T ss_pred EEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCH---
T ss_conf 87518984878999999997506579987415575454224442249999999980998348999803577753117---
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 12899999875999999989899999999981783133311247898403994787668990158999999
Q 000735 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 931 adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..|......+...+...+++ ...+++||+||.+|.||......+.|
T Consensus 161 ---------------~~~~~v~~~i~~~~~~~~~~----------~~~i~~IPISA~~G~NV~~~s~~~~w 206 (224)
T d1jnya3 161 ---------------KRYKEIVDQVSKFMRSYGFN----------TNKVRFVPVVAPSGDNITHKSENMKW 206 (224)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCC----------CTTCEEEECBTTTTBTTTBCCSSCTT
T ss_pred ---------------HHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf ---------------88887799987678761898----------56670999774578881356423887
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.3e-26 Score=205.50 Aligned_cols=190 Identities=22% Similarity=0.243 Sum_probs=126.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC----------------CCCCCCCEEEEEEEEEECCCCCCCHHHHCCCC
Q ss_conf 43479997999990899987899999983964----------------35555750365203671133200001110134
Q 000735 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 788 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~e~i~~~~~~i~~~ 851 (1324)
++.++|| |||+||+|||||||+++|+.... .....+|||+......+.+.............
T Consensus 13 ~~~~IRN--I~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~ 90 (341)
T d1n0ua2 13 KVTNVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 90 (341)
T ss_dssp CGGGEEE--EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHCC
T ss_conf 7316748--99996888869999999999779866355632322446456775683696787899942676554201002
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 34567979999199984114566402676650178623346886778999999870499379984013443576547881
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~a 931 (1324)
..++.+.|+|||||||.+|...+.++++.||+||||||+.+|+++||.++|+++...++|+||+|||||++...-..+
T Consensus 91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~-- 168 (341)
T d1n0ua2 91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVS-- 168 (341)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCC--
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH--
T ss_conf 356653799973787388999999887523724999865668204699999999876998699987726555427766--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC-CCCEEEEECCCCCCCCHH
Q ss_conf 28999998759999999898999999999817831333112478-984039947876689901
Q 000735 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR-GETFNIVPTSAISGEGIP 993 (1324)
Q Consensus 932 di~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~-g~~v~iVpvSA~tGeGI~ 993 (1324)
...++..|...+..+-..+....-. ......+ ...-.+++.||..|+++.
T Consensus 169 ---------~~~~~~~l~~~i~~vn~~i~~~~~~---~~~~~~~~P~~gnV~FaSa~~g~~Ft 219 (341)
T d1n0ua2 169 ---------KEDLYQTFARTVESVNVIVSTYADE---VLGDVQVYPARGTVAFGSGLHGWAFT 219 (341)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHSCG---GGCCCCCCGGGTCEEEEETTTTEEEE
T ss_pred ---------HHHHHHHHCCCCCCCCCEEEECCCC---CCCCCCCCCCCCCEEECCCCCCEEEE
T ss_conf ---------9999999757653024220123553---33430127445816752344672786
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.91 E-value=6.5e-24 Score=190.05 Aligned_cols=167 Identities=28% Similarity=0.398 Sum_probs=122.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-------CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEE
Q ss_conf 799979999908999878999999839643-------5555750365203671133200001110134345679799991
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVID 863 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-------~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iID 863 (1324)
.+++.+|+|+||+|||||||+++|++.... .....|+|..++..++. +..++++++|
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~d 65 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK----------------LENYRITLVD 65 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE----------------ETTEEEEECC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCC----------------CCCCCCCCCC
T ss_conf 989879999907787099999999974395620223300121330222300001----------------3785211012
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99984114566402676650178623346886778999999870499379984013443576547881289999987599
Q 000735 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 864 TPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~ 943 (1324)
||||.+|...+.+++..+|+++||+|+.+|+.+||.+++.++...++|+|+|+||||++. .+.....
T Consensus 66 ~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~-------~~~~~~~------ 132 (179)
T d1wb1a4 66 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TEEIKRT------ 132 (179)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HHHHHHH------
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC-------HHHHHHH------
T ss_conf 532232100012344302432121222221102345445555525976201123234457-------7888889------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999898999999999817831333112478984039947876689901589999999778
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 944 i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+...+....+. ...+++||+||++|+||++|++.|...++.
T Consensus 133 ---------~~~~~~~~~~~~~----------~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 133 ---------EMIMKSILQSTHN----------LKNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp ---------HHHHHHHHHHSSS----------GGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf ---------9999999987505----------788738998766782999999999961886
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=2.9e-19 Score=155.62 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=109.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 7999799999089998789999998396435-555750365203671133200001110134345679799991999841
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~ 869 (1324)
+.++++|+|+|++++|||||+++|++.++.. +...+.|............ ..+.+|||||+..
T Consensus 2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~----------------~~~~~~DtpG~~~ 65 (178)
T d1wf3a1 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR----------------RQIVFVDTPGLHK 65 (178)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT----------------EEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEE----------------EEEEECCCCCCCC
T ss_conf 854769999999999999999999688850331557732211211133200----------------1355303443111
Q ss_pred H--------HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1--------45664026766501786233468867789999998704--9937998401344357654788128999998
Q 000735 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 870 F--------~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~--~iPiIVviNKiD~~~~w~~~~~adi~~~L~~ 939 (1324)
+ .....+++..||++|||+|+.+++..+...++..++.. ++|+|+|+||+|+... ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~------~~------- 132 (178)
T d1wf3a1 66 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY------PE------- 132 (178)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS------HH-------
T ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCHHHHEECCCCCHHHHHHHCCCCCCCC------HH-------
T ss_conf 12222000011112222332003565512663013211201210012322022220001600018------89-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 7599999998989999999998178313331124789840399478766899015899999997
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 940 q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.....+... + ....++++||++|.||.+|+.+|..++
T Consensus 133 --------------~~~~~~~~~-~------------~~~~~~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 133 --------------EAMKAYHEL-L------------PEAEPRMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp --------------HHHHHHHHT-S------------TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHH-C------------CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf --------------999999862-1------------468659996678979999999999848
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=3.2e-18 Score=147.88 Aligned_cols=156 Identities=24% Similarity=0.338 Sum_probs=111.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCH-----
Q ss_conf 999990899987899999983964355557503652036711332000011101343456797999919998411-----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F----- 870 (1324)
.|+|+|++++|||||+++|++..+..+..+|+|+++..+.. ..+.||||||+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~ivDtpG~~~~~~~~~ 61 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--------------------KNHKIIDMPGFGFMMGLPK 61 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--------------------TTEEEEECCCBSCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCCC--------------------CCCEECCCCCCEECCCCCC
T ss_conf 89999999988999999996898535278977204542442--------------------2311003677500121111
Q ss_pred ----------HHHHHHCCCCCCCEEEEECCC-----------CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf ----------456640267665017862334-----------68867789999998704993799840134435765478
Q 000735 871 ----------TNLRSRGSGLCDIAILVVDIM-----------HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1324)
Q Consensus 871 ----------~~lr~rg~s~aDiaILVVDa~-----------~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~ 929 (1324)
.......+..+|++++|||+. .++..++.+.+.++...++|+|+|+||+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~----- 136 (184)
T d2cxxa1 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN----- 136 (184)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-----
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHH-----
T ss_conf 122221024566665301113300266422355101113433132077899999999849988998764322435-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8128999998759999999898999999999817831333112478984039947876689901589999999778
Q 000735 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 930 ~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
....+ ..+. ......+. . ....++|+||++|.||++|+..|...+++
T Consensus 137 ---~~~~~---------------~~~~-~~~~~~~~--~--------~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 137 ---VQEVI---------------NFLA-EKFEVPLS--E--------IDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp ---HHHHH---------------HHHH-HHHTCCGG--G--------HHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHH---------------HHHH-HHHCCCCC--C--------CCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf ---78899---------------9999-98456511--2--------68738999778898999999999987569
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=3.8e-18 Score=147.32 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCC----
Q ss_conf 97999990899987899999983964--355557503652036711332000011101343456797999919998----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGH---- 867 (1324)
-|.|+|+|++|+|||||+++|++... ......+.|.++...... ..+.++|++|.
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~~~d~~~~~~~~ 83 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-------------------DELHFVDVPGYGFAK 83 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-------------------TTEEEEECCCBCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCC-------------------CCCEEEEEEEECCCC
T ss_conf 9899998999987999999852987468860346512301211245-------------------431378887513321
Q ss_pred ---------CCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---------41145664026766501786233468867789999998704993799840134435765478812899999
Q 000735 868 ---------ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 868 ---------e~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~ 938 (1324)
..+...+.+++..+|++++|||+.+++..++.++++++...++|+|||+||+|+.. ...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~------~~~~~~~-- 155 (195)
T d1svia_ 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP------KGKWDKH-- 155 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------GGGHHHH--
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCC------HHHHHHH--
T ss_conf 12221110366776543112110122221201456421222110000025575110001203258------8889999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 87599999998989999999998178313331124789840399478766899015899999997
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
+..+...+ + .....+++++||.+|.|+++|+.+|.+++
T Consensus 156 -------------~~~~~~~l---~-----------~~~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 156 -------------AKVVRQTL---N-----------IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp -------------HHHHHHHH---T-----------CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------HHHHHHHH---C-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -------------99999986---4-----------16999789996889989999999999982
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=5.3e-18 Score=146.22 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=110.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCC----
Q ss_conf 979999908999878999999839643-555575036520367113320000111013434567979999199984----
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe---- 868 (1324)
++.|+|+||+++|||||+++|++.... .+...+.|.......+.+. ...+.++||||+.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~~ 71 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID----------------GRKYVFVDTAGLRRKSR 71 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET----------------TEEEEESSCSCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCC----------------CCEEEEECCCCCCCCCC
T ss_conf 88899999999999999999977876224225654333200122049----------------92346523688510122
Q ss_pred --------CHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------114566402676650178623346886778999999870499379984013443576547881289999987
Q 000735 869 --------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 869 --------~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q 940 (1324)
.+.....+.+..+|+++||+|+.++...++..++.++...+.|+|+++||+|+... ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~------~~~------- 138 (186)
T d1mkya2 72 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH------REK------- 138 (186)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT------GGG-------
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCC------HHH-------
T ss_conf 1222210001177898986099999960345650266889999999708860530010001101------011-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999999989899999999981783133311247898403994787668990158999999977
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.+..+...+.... + +..+++++++||++|.||.+|+.+|...+.
T Consensus 139 ----------~~~~~~~~~~~~~-----~-----~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 139 ----------RYDEFTKLFREKL-----Y-----FIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp ----------CHHHHHHHHHHHC-----G-----GGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-----C-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ----------0256899999885-----1-----168980899867899899999999999997
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=5.5e-18 Score=146.12 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=109.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCH----
Q ss_conf 9999908999878999999839643-55557503652036711332000011101343456797999919998411----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F---- 870 (1324)
.|+|+|++|+|||||+++|++.... .+...+.|.......+.... ..+.++||||....
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~~~~ 65 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG----------------KTFKLVDTCGVFDNPQDI 65 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT----------------EEEEEEECTTTTSSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCCC----------------CCCCCCCCCCEEEEECCC
T ss_conf 8999999999899999999677753031447635313222122122----------------111112454213210122
Q ss_pred -----HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----456640267665017862334688677899999987049937998401344357654788128999998759999
Q 000735 871 -----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 871 -----~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~ 945 (1324)
.......+..+|++++++++..+...++..++.+++..++|+|||+||+|++..
T Consensus 66 ~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~--------------------- 124 (171)
T d1mkya1 66 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--------------------- 124 (171)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---------------------
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---------------------
T ss_conf 33222200002355571899960112112222111122222222110013102334556---------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998989999999998178313331124789840399478766899015899999997786
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 946 ~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
.-..+...+...+ ...++|+||++|.||++|+.+|..++++.
T Consensus 125 -----~~~~~~~~~~~~~--------------~~~~i~iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 125 -----FEREVKPELYSLG--------------FGEPIPVSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp -----HHHHTHHHHGGGS--------------SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf -----5667889998618--------------99769996678989999999999869777
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.77 E-value=2.1e-18 Score=149.13 Aligned_cols=199 Identities=20% Similarity=0.139 Sum_probs=118.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHH-----------------------CCC-
Q ss_conf 79999908999878999999839643555575036520367113320000111-----------------------013-
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE-----------------------LKA- 850 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~-----------------------i~~- 850 (1324)
.||+|+||+|+|||||+++|+.........+.|+.+.+....++......... +..
T Consensus 1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (244)
T d1yrba1 1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK 80 (244)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 98999918998399999999998843876899966766445788645309999887877676403677512202867766
Q ss_pred --------CCCCCCCCEEEEECCCCCCHHHHHHHCCCCC-----CCEEEEECCCCCCCHHHHHHHHHHH-----HCCCCE
Q ss_conf --------4345679799991999841145664026766-----5017862334688677899999987-----049937
Q 000735 851 --------NATLKVPGLLVIDTPGHESFTNLRSRGSGLC-----DIAILVVDIMHGLEPQTIESLNLLK-----MRNTEF 912 (1324)
Q Consensus 851 --------~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~a-----DiaILVVDa~~Gv~~QT~E~l~lL~-----~~~iPi 912 (1324)
......+.+.++|||||..+...+.++...+ +++++|+|+..+.++|+..+..+.. ...+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (244)
T d1yrba1 81 FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATT 160 (244)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999841256543654366531478899999999863247658999636556675047669999999998707874
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 99840134435765478812899999875999999989899999999981783133311247898403994787668990
Q 000735 913 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1324)
Q Consensus 913 IVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 992 (1324)
|+++||+|++. .+....+..+...+.. +...+.... .....+...+.....++...++++|+||.+|+||
T Consensus 161 ivvinK~D~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi 230 (244)
T d1yrba1 161 IPALNKVDLLS-------EEEKERHRKYFEDIDY-LTARLKLDP--SMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 230 (244)
T ss_dssp EEEECCGGGCC-------HHHHHHHHHHHHCHHH-HHHHHHHCC--SHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH
T ss_pred EEEEECCCCCC-------HHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 26653201435-------7788899998888999-999985336--7899999999877886379981899879999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 15899999997
Q 000735 993 PDLLLLLVQWT 1003 (1324)
Q Consensus 993 ~eLl~~L~~l~ 1003 (1324)
.+|+.+|.+.+
T Consensus 231 ~~L~~~l~e~~ 241 (244)
T d1yrba1 231 EDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999971
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=6.7e-17 Score=138.08 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=98.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE--EEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC----
Q ss_conf 9999908999878999999839643555575036--5203671133200001110134345679799991999841----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~---- 869 (1324)
.|+|+|++++|||||+++|++..+......+.|. .++..... ....++||||||+..
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~~DtpG~~~~~~~ 65 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-----------------EEERFTLADIPGIIEGASE 65 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-----------------SSCEEEEEECCCCCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEECEEEEC-----------------CCCEEEECCCCEEECCCHH
T ss_conf 89998999998999999996899715346897166656415523-----------------7874898288806527517
Q ss_pred ---HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH-HHH-----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ---145664026766501786233468867789999-998-----70499379984013443576547881289999987
Q 000735 870 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 870 ---F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL-----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q 940 (1324)
+.....+.+..++++++|+|+.+.... +...+ ..+ ...+.|+|+|+||+|+.. ...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~------- 130 (180)
T d1udxa2 66 GKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLETLRKEVGAYDPALLRRPSLVALNKVDLLE-------EEA------- 130 (180)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-------HHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------HHH-------
T ss_conf 779999999987753456653001246532-10133444311220001021101155665552-------778-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 59999999898999999999817831333112478984039947876689901589999999778
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
+..+...+.. ..++++++||++|+||++|+..|..+++.
T Consensus 131 -----------~~~~~~~~~~---------------~~~~~~~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 131 -----------VKALADALAR---------------EGLAVLPVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp -----------HHHHHHHHHT---------------TTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHH---------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf -----------9999999975---------------69838999767888999999999998762
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=6.9e-17 Score=137.99 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=104.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|+.++|||||+.+|++..+.....+.++.......+..... ...+.||||||++.|..++.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~wDt~G~e~~~~~~~ 72 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK--------------RIKLQIWDTAGQERYRTITT 72 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECC--------------EEEEEEEECCCCHHHHHHHH
T ss_conf 9999999991989999999739888651455553104689986243--------------69999998998554588999
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHH-HHH---HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999-999---87049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~l---L~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..++.+|++|||+|+++.-....... +.. ......|+||+.||+|+.... .+.
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~v~----------------- 129 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER------VVS----------------- 129 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGC------CSC-----------------
T ss_pred HHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC------CCC-----------------
T ss_conf 997438778999978110434312344332102367752488997311422233------211-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998178313331124789840399478766899015899999997
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+.......+ ++++.|||++|.||.++|..|++.+
T Consensus 130 ~~~~~~~~~~~~---------------~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 130 SERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp HHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---------------CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 036677998759---------------8899956999959999999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.4e-16 Score=132.85 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|+.++|||||+.+|....+.....+.+........+.... ....+.||||||++.|..++.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~~~~~~~ 72 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG--------------KYVKLQIWDTAGQERFRSVTR 72 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT--------------EEEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC--------------CCEEEEEEECCCCHHHHHHHH
T ss_conf 999999999099999999970988865553310102567997167--------------101588997898333146578
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHH----HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999999----87049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~l----L~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
+.++.+|++|+|+|..+.........|.. ....++|+||+.||+|+..... ...
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~------------------ 130 (174)
T d2bmea1 73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VTF------------------ 130 (174)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCH------------------
T ss_pred HHHHHCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHC----HHH------------------
T ss_conf 8865277999999555405677776530111124687318999970344321000----014------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999778
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+ ..+... ..++++.|||++|.||.++|.+|+..+-.
T Consensus 131 -~~~-~~~~~~--------------~~~~~~e~Sak~~~gi~e~f~~l~~~i~~ 168 (174)
T d2bmea1 131 -LEA-SRFAQE--------------NELMFLETSALTGENVEEAFVQCARKILN 168 (174)
T ss_dssp -HHH-HHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -HHH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf -578-999985--------------79889994079896999999999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=9e-17 Score=137.11 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=110.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|+.++|||||+++|++..+.....++++..+....+..+... ..|.||||||++.|..++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~l~i~D~~G~e~~~~~~~ 73 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR--------------IKLQIWDTAGQERFRTITT 73 (173)
T ss_dssp EEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE--------------EEEEEEEC---------CC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEE--------------EEEEEEECCCCHHHHHHHH
T ss_conf 99999999949999999997098887547645412789999999999--------------9999998998564588999
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH----HH---HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999----99---87049937998401344357654788128999998759999999
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l----~l---L~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
..++.+|++|+|+|+.+ ++++..+ .. ....++|+|++.||+|+... ......
T Consensus 74 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~----~~~~~~-------------- 132 (173)
T d2fu5c1 74 AYYRGAMGIMLVYDITN---EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKE-------------- 132 (173)
T ss_dssp TTTTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC----CCSCHH--------------
T ss_pred HHCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH----CCCHHH--------------
T ss_conf 85269989999998987---144899988887765330478529999821452000----130799--------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89899999999981783133311247898403994787668990158999999977868
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l 1007 (1324)
.+....... .++++.|||.+|+||.++|.+|+..+...+
T Consensus 133 -----~~~~~~~~~---------------~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 133 -----RGEKLALDY---------------GIKFMETSAKANINVENAFFTLARDIKAKM 171 (173)
T ss_dssp -----HHHHHHHHH---------------TCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf -----998778755---------------988999957999898999999999999864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.4e-16 Score=135.77 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=107.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|+.++|||||+.+|.+..+......+++..+....+..... ...+.||||||++.|..++
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~e~~~~~~ 71 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE--------------KVKLQIWDTAGQERFRSIT 71 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCE--------------EEEEEEEECCCCHHHHHHH
T ss_conf 99999999991989999999729998764665542378999999999--------------9999999899854358899
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHH-HHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867789-9999987---04993799840134435765478812899999875999999989
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~-E~l~lL~---~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
..+++.+|++|+|+|..+....+.. .++..+. ...+|+|++.||+|+... ..+..
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~------~~v~~--------------- 130 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER------REVSQ--------------- 130 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CSSCH---------------
T ss_pred HHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC------CCHHH---------------
T ss_conf 999743266888422143200112456655420133463568999962142200------00235---------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 8999999999817831333112478984039947876689901589999999
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+....... .+++++|||++|.||.++|..|+..
T Consensus 131 --~~~~~~~~~~---------------~~~~~~~SAktg~gV~e~f~~l~~~ 165 (171)
T d2ew1a1 131 --QRAEEFSEAQ---------------DMYYLETSAKESDNVEKLFLDLACR 165 (171)
T ss_dssp --HHHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf --6777899867---------------9789997469998989999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=4e-16 Score=132.28 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=106.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+.+|++..+.....++++.......+..... ...|+||||||++.|..++
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~l~i~Dt~G~e~~~~~~ 72 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--------------TVKLQIWDTAGQERFRTIT 72 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE--------------EEEEEEECCTTTTTTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEE--------------EEEEEEEECCCCHHHHHHH
T ss_conf 89999999990989999999619888872885432578999999657--------------8999999899854357899
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHH-HHH---HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867789999-998---704993799840134435765478812899999875999999989
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL---~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
..+++.+|++|||+|.+.....+....+ ..+ ....+|+||+.||+|+.... ....
T Consensus 73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~----~~~~----------------- 131 (194)
T d2bcgy1 73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR----VVEY----------------- 131 (194)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC----CSCH-----------------
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC----CHHH-----------------
T ss_conf 9983258789999967623445667664455664046775399997214531023----2158-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999817831333112478984039947876689901589999999778
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
......... ..++++++||++|.||.++|..|+..+..
T Consensus 132 --~~~~~~~~~---------------~~~~~~e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 132 --DVAKEFADA---------------NKMPFLETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp --HHHHHHHHH---------------TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHC---------------CCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --887543321---------------47646998647576699999999999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.8e-16 Score=129.79 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=100.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|.+..+......+. ......+..+. ....+.||||||++.|..++.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~--~~~~~~i~~~~--------------~~~~l~i~D~~g~e~~~~~~~ 66 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYDRSIVVDG--------------EEASLMVYDIWEQDGGRWLPG 66 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---------C--EEEEEEEEETT--------------EEEEEEEEECC-------CHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE--EEECCEEECCC--------------CCCCEEEEECCCCCCCCEECC
T ss_conf 99998989939999999981885677588156--65300100123--------------332103420111222000023
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999-9987----04993799840134435765478812899999875999999989
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
.+++.+|++|||+|+++.........| ..+. ...+|+|++.||+|+..... .+.
T Consensus 67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----v~~----------------- 125 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSV----------------- 125 (168)
T ss_dssp HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----SCH-----------------
T ss_pred CCHHHHHHHCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCC----HHH-----------------
T ss_conf 10111110100013422222112121211000024555313798503655266511----069-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999981783133311247898403994787668990158999999977
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.......... .+++++|||++|.||.++|..|++.+.
T Consensus 126 --~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~~f~~l~~~i~ 162 (168)
T d2gjsa1 126 --DEGRACAVVF---------------DCKFIETSAALHHNVQALFEGVVRQIR 162 (168)
T ss_dssp --HHHHHHHHHH---------------TSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf --9999999865---------------988999727999499999999999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.1e-16 Score=130.93 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|....+.....+++....... .... .....+.||||||++.|..++.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~-~~~~--------------~~~~~l~i~D~~g~~~~~~~~~ 68 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVD--------------GKQVELALWDTAGLEDYDRLRP 68 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEET--------------TEEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCC--------------CCCEEEECCCCCCCCHHCCCCH
T ss_conf 999999899388999999971999887288224411221-0035--------------4202450245676400000302
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH-----HHHH--HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999-----9987--049937998401344357654788128999998759999999
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-----NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~lL~--~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
.+++.+|++|||+|+++ +.+++.+ ..+. ..++|+||+.||+|+... ......+.......
T Consensus 69 ~~~~~~~~~ilv~d~~~---~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~~~---- 135 (177)
T d1kmqa_ 69 LSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND------EHTRRELAKMKQEP---- 135 (177)
T ss_dssp GGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC------HHHHHHHHHTTCCC----
T ss_pred HHCCCCHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH------HHHHHHHHHHHCCC----
T ss_conf 21031004434202102---578887888779999973899756886632566421------56789988751033----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 898999999999817831333112478984039947876689901589999999
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
............. +.++++.|||++|.||.++|..+.+.
T Consensus 136 -v~~~e~~~~a~~~--------------~~~~~~E~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 136 -VKPEEGRDMANRI--------------GAFGYMECSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp -CCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -5599999999981--------------99679993589996999999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.4e-16 Score=131.36 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|+.++|||||+.+|++..+......+++..+....+..+... ..+.||||||++.|..++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~D~~g~~~~~~~~~ 71 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTR 71 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE--------------EEEEEEECTTGGGTCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEE--------------EEEEEECCCCCHHHHHHHH
T ss_conf 99999999949899999997299887565443432125799989999--------------9888715677336778888
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHH-HHHH---HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999-9998---7049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~lL---~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..++.+|++|+|+|..+.-..+.... +..+ .....|+|++.||+|+...+.. . .
T Consensus 72 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~----~-~----------------- 129 (166)
T d1z0fa1 72 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV----T-Y----------------- 129 (166)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----C-H-----------------
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCC----H-H-----------------
T ss_conf 87237858999740675677777888899998614565239998036565321022----7-9-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+....... .++++.|||++|.||.++|..|++.
T Consensus 130 -~~~~~~~~~~---------------~~~~~e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 130 -EEAKQFAEEN---------------GLLFLEASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp -HHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -9999999985---------------9989998689997999999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.70 E-value=3.2e-16 Score=133.05 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|+.++|||||+.+|....+.....+++... ...+.... ..+++|||||+..|...+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~--~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~ 65 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKGN----------------VTIKLWDIGGQPRFRSMWE 65 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEETT----------------EEEEEEEECCSHHHHTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE--EEEEEEEE----------------EEEEEEECCCCCCCCCCCC
T ss_conf 99999999989899999997197887405641024--42454226----------------8888840100012112222
Q ss_pred HCCCCCCCEEEEECCCCCCCHH-HHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0267665017862334688677-89999998----704993799840134435765478812899999875999999989
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~Q-T~E~l~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
.++..++++++|+|+.+..... ....+..+ ...++|+++++||+|+... .+.
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~------~~~----------------- 122 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA------LDE----------------- 122 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC------CCH-----------------
T ss_pred CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH------HHH-----------------
T ss_conf 222233101101332122111002466666554421469858999852563012------567-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 8999999999817831333112478984039947876689901589999999
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+...+....+. ...++++++||.+|+||.+++.+|++.
T Consensus 123 --~~i~~~~~~~~~~----------~~~~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 123 --KELIEKMNLSAIQ----------DREICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp --HHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf --8899999999888----------579989998585794999999999982
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.70 E-value=2.8e-16 Score=133.44 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=104.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
|...|+|+|..++|||||+.+|.+..+.. .+.|..+....+... ...+.||||||+..|..
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~----------------~~~~~~~D~~G~~~~~~ 61 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDT---ISPTLGFNIKTLEHR----------------GFKLNIWDVGGQKSLRS 61 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSS---CCCCSSEEEEEEEET----------------TEEEEEEEECCSHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEEEEEEECCCC----------------CCCEEEEECCCCHHHHH
T ss_conf 92799999999989999999980899873---023575304301134----------------54303663376055415
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCH-HHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 664026766501786233468867-789999998----704993799840134435765478812899999875999999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~~-QT~E~l~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
++...+..++++++|+|+.+-... .....|..+ ...++|+||++||+|+... ...
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~~-------------- 121 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA------LSC-------------- 121 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC------CCH--------------
T ss_conf 777641210024022201232227888876665432101579966999741452012------678--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98989999999998178313331124789840399478766899015899999997
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
......+....+ ....+++++|||++|+||.+++.+|++.+
T Consensus 122 -----~~~~~~~~~~~~----------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 122 -----NAIQEALELDSI----------RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp -----HHHHHHTTGGGC----------CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH----------HCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----999999986564----------33798899997888979899999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.69 E-value=5.7e-16 Score=131.19 Aligned_cols=156 Identities=24% Similarity=0.264 Sum_probs=103.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
.|...|+|+|..++|||||+++|.+..+.. ++...+.+..... +....+.+||+||+..|.
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-----~~~~~~~~~~~i~--------------~~~~~~~i~d~~g~~~~~ 74 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-----ITPTQGFNIKSVQ--------------SQGFKLNVWDIGGQRKIR 74 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-----EEEETTEEEEEEE--------------ETTEEEEEEECSSCGGGH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCC-----CEEEEEEEEEEEC--------------CCCEEEEEEECCCCCCCH
T ss_conf 987799999999989999999996487775-----2023310589850--------------488567676325421001
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHH-HHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 566402676650178623346886778-9999998----70499379984013443576547881289999987599999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT-~E~l~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
.++...+..+|++|+|+|+++....+. ...+..+ ...++|++|++||+|+... ...
T Consensus 75 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~------~~~------------- 135 (176)
T d1fzqa_ 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA------APA------------- 135 (176)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC------CCH-------------
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC------CCH-------------
T ss_conf 4778876415526886204565424444455443344303699859999974054542------428-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9989899999999981783133311247898403994787668990158999999
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+...+....+ ....+++++|||++|+||.++|.||++
T Consensus 136 ------~~~~~~~~~~~~----------~~~~~~~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 136 ------SEIAEGLNLHTI----------RDRVWQIQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp ------HHHHHHTTGGGC----------CSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH----------HHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf ------999999878777----------736988999869989899999999996
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.5e-16 Score=131.25 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=108.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+.+|++..+.......++..+....+.+... ...+.||||||++.|..++
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 73 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN--------------KAKLAIWDTAGQERFRTLT 73 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECSSGGGCCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECC--------------CCEEEEEECCCCHHHHHHH
T ss_conf 28999998990889999999719988750442210003679999512--------------3489999899846558899
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHH-HHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899-999987----0499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E-~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...+..+|++|+|+|+.+....+... .+..+. ....|++++.||.|....+ .+
T Consensus 74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----v~----------------- 131 (177)
T d1x3sa1 74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VD----------------- 131 (177)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SC-----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC-----CC-----------------
T ss_conf 99976288899999897861221102221011024554430357874023333323-----34-----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+....... .++++.+||++|+||.++|.+|++.+
T Consensus 132 --~~~~~~~~~~~---------------~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 132 --RNEGLKFARKH---------------SMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp --HHHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --89999999977---------------98899984899979999999999997
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=1.2e-15 Score=128.73 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=106.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
+|...|+|+|..++|||||+.+|....+.....+++............. ....+.||||+|+..|.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~ 67 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN--------------ELHKFLIWDTAGLERFR 67 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCEEEEECCCCHHHH
T ss_conf 7453899999899499999999973988864465300121122111233--------------32100353047741245
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHH-------HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5664026766501786233468867789999998-------704993799840134435765478812899999875999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-------KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL-------~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i 944 (1324)
.++...+..+|++|||+|+.+ ++++..+... .....|++++.||+|+.... ....
T Consensus 68 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~----------- 129 (167)
T d1z0ja1 68 ALAPMYYRGSAAAIIVYDITK---EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR----EVME----------- 129 (167)
T ss_dssp GGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC----CSCH-----------
T ss_pred HHHHHHHHHCCCEEEEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCC----CHHH-----------
T ss_conf 777998753054589863010---2455567776555440368862389962311010023----2048-----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99998989999999998178313331124789840399478766899015899999997
Q 000735 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 945 ~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+....... .+++++|||++|.||.++|..|++.+
T Consensus 130 --------~~~~~~~~~~---------------~~~~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 130 --------RDAKDYADSI---------------HAIFVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp --------HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf --------9999999984---------------99999993599979899999999707
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=6.5e-16 Score=130.74 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=109.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|+.++|||||+.+|.+..+.....++.+..+....+.++....... ........+.+||||||+.|..++
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~dt~G~e~~~~~~ 81 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS----SGKAFKVHLQLWDTAGQERFRSLT 81 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC----CCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 8999999999198999999961999986478654036678999901000013----466635886255578645668899
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH--------HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999987--------0499379984013443576547881289999987599999
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLK--------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~--------~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
...++.+|++|+|+|+.+ +.+++.+.... ....|++|+.||+|+...+. ..
T Consensus 82 ~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----v~-------------- 140 (186)
T d2f7sa1 82 TAFFRDAMGFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VN-------------- 140 (186)
T ss_dssp HHHHTTCCEEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SC--------------
T ss_pred HHHHHCCCEEEEEEECCC---CCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHC----CH--------------
T ss_conf 999726988999996323---454114542112012213677842999963124102210----04--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998989999999998178313331124789840399478766899015899999997786875
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e 1009 (1324)
...+....... .+++++|||++|.||.+++.+|++.+...+..
T Consensus 141 -----~~e~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~ 183 (186)
T d2f7sa1 141 -----ERQARELADKY---------------GIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183 (186)
T ss_dssp -----HHHHHHHHHHT---------------TCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -----89999999984---------------98899995899979899999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.7e-15 Score=127.62 Aligned_cols=157 Identities=19% Similarity=0.121 Sum_probs=108.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+++|.+..+.....++++.......+..... ...+.||||||++.|..++.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~ 67 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--------------TIRLQLWDTAGQERFRSLIP 67 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSC--------------EEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCC--------------CEEEEECCCCCCCHHCCCHH
T ss_conf 8999998990989999999849998763662231000001105997--------------23565425688511000438
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHH-HH---HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0267665017862334688677899999-98---7049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL---~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..+..+|++|||+|..+....+.+..|. .+ ...++|+|++.||+|+.... ....
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~~~~------------------ 125 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR----QVSI------------------ 125 (164)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHHH------------------
T ss_conf 886166449996065543132666766899998508996499973103404544----5668------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999981783133311247898403994787668990158999999977
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+......+ .++++.|||++|.||.+++..|++.++
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 126 -EEGERKAKEL---------------NVMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp -HHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf -8999999974---------------987999628999699999999999617
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.67 E-value=3.5e-16 Score=132.73 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=105.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
-+...|+|+|..++|||||+.+|.+..+.... .|......... +....+.+|||||+..|.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~---~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~~ 75 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK---PTIGFNVETLS----------------YKNLKLNVWDLGGQTSIR 75 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC---SSTTCCEEEEE----------------ETTEEEEEEEEC----CC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCEEEEEEE----------------ECCEEEEEEECCCCCCCC
T ss_conf 96689999999999889999887338777643---30654799996----------------388999999556420011
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHH-HHHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5664026766501786233468867789-9999987----0499379984013443576547881289999987599999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~-E~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
.++...+..+|++|+|+|+++....... ..|..+. ..++|+||++||+|+.... +.
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~------~~------------- 136 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL------SA------------- 136 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------CH-------------
T ss_pred HHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC------CH-------------
T ss_conf 45776513440688886411221102589999998775314776269999962566666------78-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99898999999999817831333112478984039947876689901589999999778
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+...+....+ ....+++++|||++|+||.+++.+|...+..
T Consensus 137 ------~~i~~~~~~~~~----------~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 137 ------SEVSKELNLVEL----------KDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp ------HHHHHHTTTTTC----------CSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH----------HHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ------999999999987----------6179889997798997999999999999997
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=3.3e-16 Score=132.91 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|+...+.....++++.......+...... ..+.||||||++.|..++.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~--------------~~~~i~Dt~G~~~~~~~~~ 69 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--------------VKLQIWDTAGQERFRTITT 69 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE--------------EEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEE--------------EEEEEEECCCCHHHHHHHH
T ss_conf 99999999967899999998688987637742303789999988989--------------9999998999555689999
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHH----HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999999----87049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~l----L~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
+.++.+|++|+|+|.++.-..+....+.. ......|+|++.||.|.... .....
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~------~~~~~---------------- 127 (166)
T d1g16a_ 70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR------VVTAD---------------- 127 (166)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC------CSCHH----------------
T ss_pred HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH------HHHHH----------------
T ss_conf 99734989999998997657999975440001014676504652110023321------11599----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999778
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
.+....... .+++++|||++|.||.++|.+|++++..
T Consensus 128 --~~~~~~~~~---------------~~~~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 128 --QGEALAKEL---------------GIPFIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp --HHHHHHHHH---------------TCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf --999999866---------------9769998799997999999999999996
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.1e-15 Score=126.98 Aligned_cols=168 Identities=15% Similarity=0.239 Sum_probs=106.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
+++.|+|+|..++|||||+.+|....+.....+++............ ....+.||||||++.|..
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~---------------~~~~l~i~D~~g~~~~~~ 66 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG---------------EPYTLGLFDTAGQEDYDR 66 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETT---------------EEEEEEEEEECCSGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECC---------------CEEEEECCCCCCCHHHHH
T ss_conf 75699999999969999999997199998758831021002575079---------------424650244442032324
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHH----H-H--HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6640267665017862334688677899999----9-8--7049937998401344357654788128999998759999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN----L-L--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~----l-L--~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~ 945 (1324)
++..+++.+|++|||+|+++ +.+++.+. . + ...++|++++.||+|+... ......+.......
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~---~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~------~~~~~~~~~~~~~~- 136 (191)
T d2ngra_ 67 LRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD------PSTIEKLAKNKQKP- 136 (191)
T ss_dssp TGGGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC------HHHHHHHHTTTCCC-
T ss_pred HHHHCCCCCCEEECCCCCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC------CHHHHHHHHCCCCC-
T ss_conf 45422320102311411451---889999999999987521799736877405444432------00466654301244-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9998989999999998178313331124789840399478766899015899999997
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 946 ~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
............. ..++++.|||++|.||.++|..+...+
T Consensus 137 ----v~~~~~~~~~~~~--------------~~~~~~e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 137 ----ITPETAEKLARDL--------------KAVKYVECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp ----CCHHHHHHHHHHT--------------TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHC--------------CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----3399999999972--------------998699983888969999999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=9.7e-16 Score=129.46 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=102.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|++..+.....+..+............ .....+.||||||++.|..++.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~~ 70 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG-------------DKVATMQVWDTAGQERFQSLGV 70 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS-------------SCCEEEEEECCC----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC-------------CCCCCCEEECCCCCHHHHHHHH
T ss_conf 999999999698999999970988876376545310123464057-------------6312012210387201246778
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH-------HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999-9987-------04993799840134435765478812899999875999999
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~-------~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
..++.+|++|||+|.++....+....| ..+. ..++|+||++||+|+........
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~------------------ 132 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS------------------ 132 (175)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC------------------
T ss_pred HHHHCCCEEEEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHH------------------
T ss_conf 87521554899850012333211332011566664101356686799812422012212015------------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98989999999998178313331124789840399478766899015899999997
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
......+... -+.+++++|||++|.||.++|.+|++.+
T Consensus 133 -----~~~~~~~~~~-------------~~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 133 -----EKSAQELAKS-------------LGDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp -----HHHHHHHHHH-------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH-------------CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----7778899998-------------0997699991899949999999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.2e-15 Score=125.64 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=104.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 999990899987899999983964355-5575036520367113320000111013434567979999199984114566
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
.|+|+|+.++|||||+.+|++..+... ...++...+....+...... ..++|||||||+.|..++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~Dt~G~e~~~~~~ 73 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK--------------VKLQMWDTAGQERFRSVT 73 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE--------------EEEEEEECCCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCE--------------EEEEEEECCCCHHHHHHH
T ss_conf 999999999299999999971998865412023003677788854838--------------999999899836668888
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHH----HHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999----98704993799840134435765478812899999875999999989
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~----lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
...++.+|++|+|+|..+....+....+. .......|+|++.||+|....+. .+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----v~~----------------- 132 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKR----------------- 132 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCH-----------------
T ss_pred HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHCCC----CCH-----------------
T ss_conf 98614786558986287555503455554554431587735999973303032066----569-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999998178313331124789840399478766899015899999997
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+....... .++++++||++|.||.+++.+|++.+
T Consensus 133 --~~~~~~~~~~---------------~~~~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 133 --EDGEKLAKEY---------------GLPFMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp --HHHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf --9999999984---------------98799984898969999999999973
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-15 Score=128.72 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=106.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
+...|+|+|..++|||||+.+|+...+.....+....... ..+.++.. ...+.+|||+|+..|..
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~l~~~d~~g~~~~~~ 69 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGI--------------PARLDILDTAGQEEFGA 69 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTE--------------EEEEEEEECCCTTTTSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCCE--------------EEEEECCCCCCCCCCCC
T ss_conf 7279999997996989999999739997100344111002-57503983--------------30010121245532234
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH-H----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66402676650178623346886778999999-8----704993799840134435765478812899999875999999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNL-L----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~l-L----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
++...++.+|++|||+|.++......+..|.. + ...++|+|+|.||+|+... +....
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~----~~~~~-------------- 131 (173)
T d2fn4a1 70 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ----RQVPR-------------- 131 (173)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG----CCSCH--------------
T ss_pred CCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHC----CCCCH--------------
T ss_conf 521120120034564011445662022312479998725678865999984060221----13540--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989899999999981783133311247898403994787668990158999999977
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+....... .++++.|||++|.||.++|..|++.+.
T Consensus 132 -----~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 132 -----SEASAFGASH---------------HVAYFEASAKLRLNVDEAFEQLVRAVR 168 (173)
T ss_dssp -----HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----2456788761---------------988999838999599999999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.6e-15 Score=127.81 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=105.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|.+..+......+++.......+..+... ..+.||||||++.|..++.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~d~~g~e~~~~~~~ 71 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT--------------IKAQIWDTAGQERYRRITS 71 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE--------------EEEEEEECSSGGGTTCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEE--------------EEEEECCCCCCHHHHHHHH
T ss_conf 99999999909899999998299887656553210355799999988--------------8998425687377888889
Q ss_pred HCCCCCCCEEEEECCCCCCCH-HHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867-7899999987---049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~-QT~E~l~lL~---~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..+..+|++|+|+|..+.-.. .....+..+. ..++|+|+|.||+|+... +.....
T Consensus 72 ~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~----~~~~~~----------------- 130 (175)
T d2f9la1 72 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVPTD----------------- 130 (175)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSCHH-----------------
T ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----CCCHHH-----------------
T ss_conf 77540675899997888654034788999999845899839999765154002----433699-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999778
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
.. ..+... ..+++++|||++|.||.+++..|+..+..
T Consensus 131 --~~-~~~~~~--------------~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 131 --EA-RAFAEK--------------NNLSFIETSALDSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp --HH-HHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HH-HHHHCC--------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --98-776404--------------68669999649996999999999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-15 Score=126.60 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=103.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+.+|+...+.....+++..... ..+.... ....+.||||||++.|..++
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~~~l~i~D~~g~e~~~~~~ 74 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGG--------------KQYLLGLYDTAGQEDYDRLR 74 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSS--------------CEEEEEEECCCCSSSSTTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEEECC--------------CEEEEECCCCCCCCHHHHHH
T ss_conf 99999999998999999999649998767771343246-8985079--------------55875204665420000112
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHH-----HHHH--HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867789999-----9987--04993799840134435765478812899999875999999
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-----NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~lL~--~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
...++.+|++|||+|+++ +++++.+ ..++ ..++|+|++.||+|+... ......+......
T Consensus 75 ~~~~~~a~~~ilv~d~t~---~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------~~~~~~~~~~~~r---- 141 (185)
T d2atxa1 75 PLSYPMTDVFLICFSVVN---PASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD------PKTLARLNDMKEK---- 141 (185)
T ss_dssp GGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC------HHHHHHHTTTTCC----
T ss_pred HHCCCCCCEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC------HHHHHHHHHCCCC----
T ss_conf 313442111211124635---788887889999999960788870676424433221------1123443002355----
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98989999999998178313331124789840399478766899015899999997
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.............. +.++++.|||++|.||.++|..++..+
T Consensus 142 -~v~~~~~~~~a~~~--------------~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 142 -PICVEQGQKLAKEI--------------GACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp -CCCHHHHHHHHHHH--------------TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -20399999999981--------------997799945898829899999999987
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.65 E-value=2.3e-15 Score=126.62 Aligned_cols=155 Identities=20% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
...|+|+|..++|||||+.+|........ ..| .+..+.... .....+.||||||+..+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~---~~t--~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~ 72 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQSVTT---IPT--VGFNVETVT--------------YKNVKFNVWDVGGQDKIRPL 72 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCCEEE---EEE--TTEEEEEEE--------------ETTEEEEEEEESCCGGGHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCC---CCE--EEEEEEEEE--------------CCCEEEEEECCCCCCHHHHH
T ss_conf 47999999999878999999844888874---321--325677750--------------35244478627986101467
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHH-HHHHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6402676650178623346886778-99999987----049937998401344357654788128999998759999999
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~s~aDiaILVVDa~~Gv~~QT-~E~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
+...+..++++|+|+|++..-.... ...|.... ...+|++|++||+|+...+ ..
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~------~~--------------- 131 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------KP--------------- 131 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------CH---------------
T ss_pred HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------CH---------------
T ss_conf 776512662489998415422178999999987530146665131121013561003------48---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 898999999999817831333112478984039947876689901589999999
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+...+....+. ...+++++|||++|+||.+++.+|...
T Consensus 132 ----~~i~~~~~~~~~~----------~~~~~~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 132 ----HEIQEKLGLTRIR----------DRNWYVQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp ----HHHHHHTTGGGCC----------SSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf ----9999999999987----------679889980288896999999999985
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=6.2e-16 Score=130.90 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=104.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+.+|.+..+.....+++........+..... ...+.+|||||+..|..++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~ 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE--------------DVRLMLWDTAGQEEFDAIT 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE--------------EEEEEEECCTTGGGTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC--------------EEEEEEECCCCCCCHHHHH
T ss_conf 99999998995989999999829888643543212211010110684--------------0356542137863210324
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH--HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867789999-9987--049937998401344357654788128999998759999999898
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~--~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
...++.+|+++||+|+.+....+....| ..+. ..++|+|+|.||+|+... +....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~----~~v~~------------------ 126 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD----SCIKN------------------ 126 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG----CSSCH------------------
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC----EEEEE------------------
T ss_conf 54630686699999423224443022343322223898327776325775344----45640------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+....... .++++++||++|.||.++|..|++.
T Consensus 127 -~~~~~~~~~~---------------~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 127 -EEAEGLAKRL---------------KLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp -HHHHHHHHHH---------------TCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -2667799875---------------9879996069996999999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.3e-15 Score=128.44 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=106.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
.|.+.|+|+|..++|||||+.+|+...+.....+++......... .. .....+.|||++|+..|.
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~-~~--------------~~~~~~~~~d~~g~~~~~ 67 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD--------------GKPVNLGLWDTAGQEDYD 67 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEE-ET--------------TEEEEEEEECCCCSGGGT
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECEEEEEE-CC--------------CCCEEEEEECCCCCCCCH
T ss_conf 606999999999979999999997498985446631100011000-36--------------863489860354300100
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHH-H-HHH--HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 566402676650178623346886778999-9-998--704993799840134435765478812899999875999999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-L-NLL--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~-l-~lL--~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
.++..+++.+|++|||+|+++....+.+.. | ..+ ...++|+|+|.||+|+... ......+..... .
T Consensus 68 ~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~---~- 137 (183)
T d1mh1a_ 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD------KDTIEKLKEKKL---T- 137 (183)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC------HHHHHHHHHTTC---C-
T ss_pred HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHHHHHHHHCCC---C-
T ss_conf 102212344551445203534788998999999999973899868998402222121------001566511135---6-
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 9898999999999817831333112478984039947876689901589999999
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.............. ..++++.|||++|.||.++|..|++.
T Consensus 138 -~~~~~~~~~~a~~~--------------~~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 138 -PITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp -CCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHC--------------CCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf -30368999999981--------------99669992888881999999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.8e-15 Score=125.10 Aligned_cols=157 Identities=14% Similarity=0.085 Sum_probs=104.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
+..|+|+|..++|||||+.+|.+..+.....+++..... ..+..+. ....+.||||+|+..|..+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~d~~g~~~~~~~ 68 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNG--------------QEYHLQLVDTAGQDEYSIF 68 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETT--------------EEEEEEEEECCCCCTTCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCC-EEEECCC--------------EEEEEEECCCCCCCCCCCC
T ss_conf 338999998992989999999719888544754211310-3883176--------------7987630112464222234
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHHHH-----HHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64026766501786233468867789999-----9987049937998401344357654788128999998759999999
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
+...++.+|++|||+|+++.-..+....| ..+...++|++++.||+|+...+ .-+.
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r----~v~~--------------- 129 (167)
T d1xtqa1 69 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----VISY--------------- 129 (167)
T ss_dssp CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGC----CSCH---------------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC----CHHH---------------
T ss_conf 321223222110010221023345555310122100013454404505333533222----1158---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 8989999999998178313331124789840399478766899015899999997
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+......+ .++++.|||++|.||.++|..|+..+
T Consensus 130 ----~~~~~~a~~~---------------~~~~~e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 130 ----EEGKALAESW---------------NAAFLESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp ----HHHHHHHHHH---------------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----9999999983---------------98899983699979999999999983
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.1e-15 Score=124.83 Aligned_cols=156 Identities=21% Similarity=0.162 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|+...+.....+++........+.... ....+.+|||+|+..|..++.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 70 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG--------------KRVNLAIWDTAGQERFHALGP 70 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS--------------CEEEEEEEECCCC-------C
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCC--------------CCCEEEEECCCCCCEECCCCH
T ss_conf 999999999398999999982998864454200100001101378--------------531254402688604510350
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH----HHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999----9987049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l----~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..++.+|++|||+|+++.-..+....| ........|+|++.||+|+... +.-+.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~----~~v~~------------------ 128 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE----RHVSI------------------ 128 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG----CCSCH------------------
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC----CCCCH------------------
T ss_conf 00038966699980995567775543322001111233212452321020101----23225------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998178313331124789840399478766899015899999997
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+....... .++++.|||++|.||.++|..|++.+
T Consensus 129 -~e~~~~a~~~---------------~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 129 -QEAESYAESV---------------GAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp -HHHHHHHHHT---------------TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -8999999985---------------98399970699969899999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=5e-15 Score=124.17 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|.+..+.....+++........+.... ....+.+|||||+..+..++.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 69 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD--------------RLVTMQIWDTAGQERFQSLGV 69 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS--------------CEEEEEEEEECSSGGGSCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC--------------CEEEEEEEECCCCCCCCCCCC
T ss_conf 999999999198999999971989887388434123100133089--------------347777640378641112112
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH-------HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0267665017862334688677899999-987-------04993799840134435765478812899999875999999
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL~-------~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
..+..+|++|+|+|.++.........|. .+. ..++|+|+|+||+|+... ....
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-----~~~~-------------- 130 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-----QVAT-------------- 130 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----CSCH--------------
T ss_pred CCCCCCCEEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC-----CHHH--------------
T ss_conf 224675589983025411332100256789998733233567778999875033312-----0148--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9898999999999817831333112478984039947876689901589999999778
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
......+... ..+++++|||++|.||.++|.+|++.+-.
T Consensus 131 -----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 131 -----KRAQAWCYSK--------------NNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp -----HHHHHHHHHT--------------TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -----9999999986--------------59769997489896999999999999985
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-15 Score=126.23 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|++..+.....+.+........+..... ...+.+|||||++.|..++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~d~~g~~~~~~~~~ 73 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------------TVKFEIWDTAGQERYHSLAP 73 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE--------------EEEEEECCCCCCHHHHHHHH
T ss_conf 9999999994989999999859888543442022000000000214--------------78777415787311005479
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999-9987---049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~---~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..++.+|++|||+|..+.........| ..+. ..++|+|++.||+|+.... ..+.
T Consensus 74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~------------------ 131 (170)
T d1r2qa_ 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR----AVDF------------------ 131 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCCH------------------
T ss_conf 986086658997325046677878887643320368984598632412432234----5617------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689901589999999
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+ ..+... ..++++.|||++|.||.++|..|+..
T Consensus 132 -e~~-~~~~~~--------------~~~~~~e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 132 -QEA-QSYADD--------------NSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp -HHH-HHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred -HHH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -777-778986--------------69789996489997899999999997
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3e-15 Score=125.87 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=108.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
+|...|+|+|..++|||||+.+|+...+.....+.+........ ... .....+.+||++|+..|.
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~-~~~--------------~~~~~~~~~d~~g~~~~~ 65 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVD--------------CQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEE-ESS--------------SCEEEEEEEEECSSCSST
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEE-EEE--------------EEEEEECCCCCCCCCCCC
T ss_conf 95659999998998999999999709898755875021110368-862--------------268874000246752234
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56640267665017862334688677899999-987----0499379984013443576547881289999987599999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
.++..+++.+|++|||+|+++....+....|. .+. ..++|+|++.||+|+...- ....
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~~~~------------- 128 (167)
T d1c1ya_ 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER----VVGK------------- 128 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC----CSCH-------------
T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC----CCCH-------------
T ss_conf 45431122355358852104346667679999999885178897099999843755431----4652-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 998989999999998178313331124789840399478766899015899999997
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
... ..+...- ..++++.|||++|.||.++|.+|++.+
T Consensus 129 ------~~~-~~~~~~~-------------~~~~~~e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 129 ------EQG-QNLARQW-------------CNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp ------HHH-HHHHHHT-------------TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHH-------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------578-9999984-------------897799973899919899999999970
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.63 E-value=1.2e-14 Score=121.31 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=103.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+++|.+..+.....+++...+... +..+. ....+.||||||+..|..++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~-~~~~~--------------~~~~l~i~d~~g~~~~~~~~ 69 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDG--------------EEVQIDILDTAGQEDYAAIR 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETT--------------EEEEEEEEECCC---CHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCC--------------CCCCCCCCCCCCCCCHHHHH
T ss_conf 6999999899588999999972999865477534310111-13454--------------33222233445653123454
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867789999-9987----0499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...++.+|++|||+|..+....+....| ..+. ..++|+|+|.||+|+.... .-..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~----~v~~---------------- 129 (168)
T d1u8za_ 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR----QVSV---------------- 129 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC----CSCH----------------
T ss_pred HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCH----------------
T ss_conf 31142331668985254113455589999999996188998189995364212233----5307----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+....... .+++++|||++|.||.++|..|++.+
T Consensus 130 ---~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 130 ---EEAKNRADQW---------------NVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ---HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---8899999976---------------97699986899929999999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.5e-15 Score=124.55 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=104.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++|||||+++|++..+.....+.+............ ....+.+||+||+..|..++
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~d~~~~~~~~~~~ 68 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG---------------ETCLLDILDTAGQEEYSAMR 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETT---------------EEEEEEEEEECCCGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEC---------------EEEEEEEEECCCCCCCCCCH
T ss_conf 699999979989999999998098898657741001011023101---------------00023334115753223321
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999-987----0499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...++.++++|+|+|.++....+....|. .+. ..++|+|++.||+|+... .... .
T Consensus 69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----~~~~-~-------------- 128 (166)
T d1ctqa_ 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVES-R-------------- 128 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC-----CSCH-H--------------
T ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-----CCCH-H--------------
T ss_conf 6653102333301112433507788899999998637899709999614554544-----4457-7--------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.+....... .++++.|||++|+||.++|..|++.+
T Consensus 129 ----~~~~~~~~~---------------~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 129 ----QAQDLARSY---------------GIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----HHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHH---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----889999980---------------98499985899948999999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.1e-15 Score=125.77 Aligned_cols=159 Identities=21% Similarity=0.154 Sum_probs=104.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|.+..+......+.+............ ....+.+|||+|+..|..++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~~~~~ 70 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG--------------KQIKLQIWDTAGQESFRSITR 70 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT--------------EEEEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEE--------------EEEEEEEECCCCCCCHHHHHH
T ss_conf 999999999399999999962999987566411011013321301--------------688787641468632246778
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHH-HHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789-9999987---049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~-E~l~lL~---~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..+..+|++|||+|+.+....... ..|..+. ..++|+|++.||+|+... +....
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~------------------ 128 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR----RDVKR------------------ 128 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSCH------------------
T ss_pred HHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH----HHHHH------------------
T ss_conf 87404678999975258488776788899999857999859999527752554----44589------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998178313331124789840399478766899015899999997786
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
.......... .++++.|||++|.||.+++..|++.+-..
T Consensus 129 -~~~~~~a~~~---------------~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~ 167 (173)
T d2a5ja1 129 -EEGEAFAREH---------------GLIFMETSAKTACNVEEAFINTAKEIYRK 167 (173)
T ss_dssp -HHHHHHHHHH---------------TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf -9888789875---------------98799944899979999999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.8e-15 Score=127.38 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|++..+.....+++...+....+.... ....+.||||||+..|..++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~ 70 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIKFNVWDTAGQEKFGGLRD 70 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTT--------------CCEEEEEEECTTHHHHSSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCEECC
T ss_conf 999999999088999999984988854465300110001122223--------------332221112346533000020
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHH-HHHH--HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789999-9987--0499379984013443576547881289999987599999998989
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~--~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i 952 (1324)
..++.+|++|||+|+++.-..+.+..| ..+. ..++|+|++.||+|+... .. ..
T Consensus 71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-~~-~~---------------------- 126 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR-KV-KA---------------------- 126 (170)
T ss_dssp GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS-CC-TT----------------------
T ss_pred HHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH-HH-HH----------------------
T ss_conf 0113321100011322110100267778887640479723534465545551-33-36----------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999998178313331124789840399478766899015899999997
Q 000735 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 953 ~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
... .+.. ...+++++|||++|.||.+++.+|+..+
T Consensus 127 -~~~-~~~~--------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 127 -KSI-VFHR--------------KKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp -TSH-HHHS--------------SCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred -HHH-HHHH--------------HCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -888-9998--------------7598799996898979999999999997
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-14 Score=120.80 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|++..+.....+++....... ...+. ....+.+|||+|+..|..++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~-~~~~~--------------~~~~l~~~d~~g~~~~~~~~~ 68 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISCDK--------------SICTLQITDTTGSHQFPAMQR 68 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE-EEETT--------------EEEEEEEEECCSCSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCC-EEECC--------------CCCEECCCCCCCCCCCCCCCC
T ss_conf 899999899798999999970999876376133101121-00022--------------000001112356521110124
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHH-HHHHHH---H--HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 026766501786233468867789-999998---7--0499379984013443576547881289999987599999998
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLL---K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~-E~l~lL---~--~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
..+..+|++|||+|+++.-..... ..+..+ . ..++|+|+|.||+|+..... ...
T Consensus 69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----v~~---------------- 128 (171)
T d2erxa1 69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQS---------------- 128 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCH----------------
T ss_pred CCCCCEEEEEEEEECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC----CCH----------------
T ss_conf 343320389997202221100102102343333404678986899960665322345----548----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+....... .++++.|||++|.||.++|..|+.+.
T Consensus 129 ---~e~~~~~~~~---------------~~~~~e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 129 ---SEAEALARTW---------------KCAFMETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ---HHHHHHHHHH---------------TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---9999999984---------------98699983899939999999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=2.1e-14 Score=119.58 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=105.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
+.|+|+|..++|||||+.+|++..+.....+++...+....+.... ....+.||||+|++.|..++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--------------HTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCC--------------CCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999198999999972999865465301012023221111--------------23223455568716678888
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHH-HH---HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999-98---704993799840134435765478812899999875999999989
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL---~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
...+..+|++|||+|..+.........|. .+ .....|+++++||+|+........- ..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v-~~----------------- 131 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKV-AR----------------- 131 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS-CH-----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH-HH-----------------
T ss_conf 888734650799980784443034552021101333333202321002341011001354-69-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999981783133311247898403994787668990158999999
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+....... .++++.|||++|.||.++|..|++
T Consensus 132 --~~~~~~~~~~---------------~~~~~e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 132 --EEGEKLAEEK---------------GLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp --HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHT
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf --9999999986---------------998999348999589999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=4.4e-16 Score=132.03 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH----
Q ss_conf 9999908999878999999839643555575036520367113320000111013434567979999199984114----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT---- 871 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~---- 871 (1324)
.|+|+|++|+|||||+++|++..+......+.|.......+.+. ....+.||||||+....
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~---------------~~~~~~~~DtpG~~~~~~~~~ 67 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD---------------DGRSFVMADLPGLIEGAHQGV 67 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS---------------SSCEEEEEEHHHHHHHTTCTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEEEEECEEEEC---------------CCCEEEEECCCCCCCCCHHHH
T ss_conf 69998999987999999996899735558984475654505731---------------896899814787556760778
Q ss_pred ---HHHHHCCCCCCCEEEEECCCC--CCCHH----HHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---566402676650178623346--88677----8999999870---49937998401344357654788128999998
Q 000735 872 ---NLRSRGSGLCDIAILVVDIMH--GLEPQ----TIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1324)
Q Consensus 872 ---~lr~rg~s~aDiaILVVDa~~--Gv~~Q----T~E~l~lL~~---~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~ 939 (1324)
....+.+..++.++++++... +.... ....+..+.. .++|+|||+||+|+... .
T Consensus 68 ~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~---------~----- 133 (185)
T d1lnza2 68 GLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---------A----- 133 (185)
T ss_dssp TTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---------H-----
T ss_pred HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHHH---------H-----
T ss_conf 99999999999855455201210343310233322332101000111037860231012432768---------9-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 75999999989899999999981783133311247898403994787668990158999999977
Q 000735 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 940 q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+.. +... ++..++++++||++|+||.+|+..|..+++
T Consensus 134 ----------~~~~~----~~~~------------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 134 ----------ENLEA----FKEK------------LTDDYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp ----------HHHHH----HHHH------------CCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ----------HHHHH----HHHH------------HCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ----------99999----9997------------326994899978889899999999999612
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=1.4e-14 Score=120.97 Aligned_cols=186 Identities=20% Similarity=0.199 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH-HHH
Q ss_conf 9999908999878999999839643555575036520367113320000111013434567979999199984114-566
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-NLR 874 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~-~lr 874 (1324)
.|+|+|++++|||||+++|++..+.... .+++...+...+.. .....+.+||||||..|. .++
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~---------------~~~~~~~~~d~~g~~~~~~~~~ 65 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNN---------------NRGNSLTLIDLPGHESLRFQLL 65 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSS---------------TTCCEEEEEECCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC-CCEEEEEEEEEEEE---------------EEEEEEEEEECCCCCCCCCHHH
T ss_conf 8999999998989999999809987642-87027899999964---------------5435444420211234330156
Q ss_pred HHCCCCCCCEEEEECCCCCCCH--HHHHHH-HHHH-----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4026766501786233468867--789999-9987-----0499379984013443576547881289999987599999
Q 000735 875 SRGSGLCDIAILVVDIMHGLEP--QTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~--QT~E~l-~lL~-----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
..++..++.+++|||+++.... ...+.+ .++. ..++|++|++||+|++... +...+...+.........
T Consensus 66 ~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~---~~~~i~~~l~~e~~~~~~ 142 (207)
T d2fh5b1 66 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK---SAKLIQQQLEKELNTLRV 142 (207)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CHHHHHHHHHHHHHHHHH
T ss_conf 66554305563477766653459999999999997688751589479999885467888---999999999987515531
Q ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCEEEEECCCCCCCC------HHHHHHHHHH
Q ss_conf 998989999999998178---313331124789840399478766899------0158999999
Q 000735 947 EFNMRLVQIVTQLKEQGM---NTELYYKNKDRGETFNIVPTSAISGEG------IPDLLLLLVQ 1001 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl---~~e~~~~~~~~g~~v~iVpvSA~tGeG------I~eLl~~L~~ 1001 (1324)
....... .......... ....++....+...+.++++|+.+|.| +..+-.||..
T Consensus 143 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 143 TRSAAPS-TLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp HCC-------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred CCCCCCC-EEEHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 0145421-20042556666045221445775657737999661478765343229999999997
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.2e-15 Score=128.83 Aligned_cols=147 Identities=23% Similarity=0.313 Sum_probs=100.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCH----
Q ss_conf 9999908999878999999839643-55557503652036711332000011101343456797999919998411----
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F---- 870 (1324)
.|+|+|++++|||||+++|++..+. .....+.|.......+.... ..+.+|||||+...
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~Dt~G~~~~~~~~ 65 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG----------------ILFRIVDTAGVRSETNDL 65 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT----------------EEEEEEESSCCCSSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECC----------------EEEEECCCCCCCCCCCCH
T ss_conf 8999999999999999999589963553035632111047997589----------------058861666612577007
Q ss_pred -----HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----456640267665017862334688677899999987049937998401344357654788128999998759999
Q 000735 871 -----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 871 -----~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~ 945 (1324)
.....+.+..+|++|+|+|++++...+....+..+ ...++++++||+|....+ +.
T Consensus 66 ~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~------~~------------ 125 (160)
T d1xzpa2 66 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI------NE------------ 125 (160)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC------CH------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHC--CCCCCEEEEEECCCCCHH------HH------------
T ss_conf 7889999999999869999999747888625666653312--243100234301343303------46------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99989899999999981783133311247898403994787668990158999999
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 946 ~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
..+...+ +...+++++||++|+||++|+..|.+
T Consensus 126 -------~~~~~~~----------------~~~~~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 126 -------EEIKNKL----------------GTDRHMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp -------HHHHHHH----------------TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred -------HHHHHHH----------------CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -------9999984----------------79996799978899899999999976
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-14 Score=119.60 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=103.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|..++||||||.+|....+.....+....... ..+..+. ....+.+|||+|+..|..++
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~ 70 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCVIDD--------------RAARLDILDTAGQEEFGAMR 70 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEE-EEEEETT--------------EEEEEEEEECC----CCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE-EEEEECC--------------CCCCCCCCCCCCCCCCCCCC
T ss_conf 28999999997999999999739988545766452000-0010012--------------12111221125653225454
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHH-----HHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999-----9870499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-----lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...++.+|++|||+|.++.-.......|. .......|+||+.||+|+.... ....
T Consensus 71 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~v~~---------------- 130 (171)
T d2erya1 71 EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR----QVTQ---------------- 130 (171)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC----SSCH----------------
T ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHC----CCHH----------------
T ss_conf 43342451689960454344314678876888763035788779998302066531----3227----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9899999999981783133311247898403994787668990158999999977
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+....... .++++.|||++|.||.++|..|++.+.
T Consensus 131 ---~~~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~ 167 (171)
T d2erya1 131 ---EEGQQLARQL---------------KVTYMEASAKIRMNVDQAFHELVRVIR 167 (171)
T ss_dssp ---HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf ---8889999982---------------987999738999399999999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4e-15 Score=124.88 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=104.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
+|...|+|+|..++|||||+.+|++..+.....+++..... .....+.. ...+.+|||+|+..|.
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~--------------~~~l~~~d~~g~~~~~ 65 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVDSS--------------PSVLEILDTAGTEQFA 65 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTE--------------EEEEEEEECCCTTCCH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEECCCC--------------EEEECCCCCCCCCCCC
T ss_conf 95659999998993999999999719998766886113553-35404761--------------5762134577751234
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHH-HHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5664026766501786233468867789999-998----70499379984013443576547881289999987599999
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ 946 (1324)
.++...++.+|++|||+|+++.........| ..+ ...++|+|||.||+|+... +....
T Consensus 66 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~----~~~~~------------- 128 (167)
T d1kaoa_ 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE----REVSS------------- 128 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG----CCSCH-------------
T ss_pred CCHHHHHHCCCCEEEEEEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHC----CCCHH-------------
T ss_conf 4427776153511566421356665400000466655304899988999972250320----23269-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 998989999999998178313331124789840399478766899015899999997
Q 000735 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 947 ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.......... .+++++|||++|.||.++|..|++.+
T Consensus 129 ------~~~~~~~~~~---------------~~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 129 ------SEGRALAEEW---------------GCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ------HHHHHHHHHH---------------TSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------9999999974---------------98599988899958999999999987
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=2.4e-14 Score=119.12 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=103.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
...|+++|..++|||||+.+|.+..+.....+++..... ..+.... ....+.+|||+|+..|..+
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~i~d~~g~~~~~~~ 68 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDN--------------QWAILDVLDTAGQEEFSAM 68 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE-EEEEETT--------------EEEEEEEEECCSCGGGCSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC-CCCCCCC--------------CCCCCCCCCCCCCCCCCCC
T ss_conf 579999998995989999999709888545763120101-1112355--------------3220122012464232211
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHHHH-H----HHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64026766501786233468867789999-9----987049937998401344357654788128999998759999999
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-N----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 874 r~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~----lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
+...++.+|++|||+|+++.-.......| . .....++|+|++.||+|+... ..+.
T Consensus 69 ~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~------~~v~-------------- 128 (169)
T d1x1ra1 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL------RKVT-------------- 128 (169)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT------CCSC--------------
T ss_pred HHHHHHHCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHH------CEEE--------------
T ss_conf 24453003389983210100234322024677876314567638998436546662------3000--------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHH
Q ss_conf 898999999999817831333112478984039947876689-9015899999997
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~eLl~~L~~l~ 1003 (1324)
...+......++ ++++.|||++|. ||.++|..|++.+
T Consensus 129 ---~e~~~~~~~~~~---------------~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 129 ---RDQGKEMATKYN---------------IPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp ---HHHHHHHHHHHT---------------CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCC---------------CEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf ---316778999759---------------87999907988839999999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=4.9e-14 Score=116.85 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=77.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH-
Q ss_conf 9799999089998789999998396435555750365203671133200001110134345679799991999841145-
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~- 872 (1324)
.|.|+|+|++|+|||||+++|++..+. +++|.......+. +....+.|||||||..+..
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~----------------~~~~~~~l~D~~g~~~~~~~ 62 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAAD----------------YDGSGVTLVDFPGHVKLRYK 62 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETT----------------GGGSSCEEEECCCCGGGTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC----CEEEECCEEEEEE----------------ECCEEEEEEECCCCCCHHHH
T ss_conf 889999999998899999999679999----8277624289998----------------58848999852555321367
Q ss_pred ---HHHHCCCCCCCEEEEECCCCCCC--HH-------HHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf ---66402676650178623346886--77-------89999998704993799840134435
Q 000735 873 ---LRSRGSGLCDIAILVVDIMHGLE--PQ-------TIESLNLLKMRNTEFIVALNKVDRLY 923 (1324)
Q Consensus 873 ---lr~rg~s~aDiaILVVDa~~Gv~--~Q-------T~E~l~lL~~~~iPiIVviNKiD~~~ 923 (1324)
.+...+..++.+++++|+..... .. +...+..+...++|+|+++||||++.
T Consensus 63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~ 125 (209)
T d1nrjb_ 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125 (209)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 999998876412456248997346233999999999999999998743698699998003455
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.5e-14 Score=116.44 Aligned_cols=155 Identities=20% Similarity=0.169 Sum_probs=100.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
+.|+|+|..++|||||+.+|++..+.....+++...+........ ....+.||||+|+..|. .+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~---------------~~~~l~i~D~~g~~~~~-~~ 66 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD---------------EVVSMEILDTAGQEDTI-QR 66 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETT---------------EEEEEEEEECCCCCCCH-HH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC---------------CCEEEEEEECCCCCCCC-CC
T ss_conf 799999989978999999997398987637731001112112466---------------32178885111222234-43
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHH-HH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 40267665017862334688677899999-98----70499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...++.+|++|||+|.++......+..|. +. ...++|+|++.||+|+.... .-+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r----~V~~---------------- 126 (168)
T d2atva1 67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR----QVST---------------- 126 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC----CSCH----------------
T ss_pred HHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHC----CCCH----------------
T ss_conf 15433641000102568865324455400112111134675226651410255532----5769----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899-015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeG-I~eLl~~L~~l~ 1003 (1324)
..+.......+ ++++.|||++|.| |.++|..|++.+
T Consensus 127 ---~e~~~~a~~~~---------------~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 127 ---EEGEKLATELA---------------CAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp ---HHHHHHHHHHT---------------SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHC---------------CEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf ---99999999809---------------95999755418819999999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.1e-14 Score=121.52 Aligned_cols=145 Identities=22% Similarity=0.208 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH--
Q ss_conf 99999089998789999998396435-555750365203671133200001110134345679799991999841145--
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~-- 872 (1324)
.|+|+|++++|||||+++|++.++.. ....|.+.......+.+. ...+.++||||......
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID----------------GMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET----------------TEEEEEEECCCCSCCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECC----------------CCEEEECCCCCCCCCCCCC
T ss_conf 999989999989999999968886675124664220476532026----------------8235413653212246520
Q ss_pred ------HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ------66402676650178623346886778999999870---499379984013443576547881289999987599
Q 000735 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1324)
Q Consensus 873 ------lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~---~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~ 943 (1324)
....++..+|++|+++|+...........|..... .++|+|+|+||+|+... ..
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~-----~~------------ 129 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE-----TL------------ 129 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC-----CC------------
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH-----HH------------
T ss_conf 2478999999987413320110256542034555444555420141010204654443355-----88------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9999989899999999981783133311247898403994787668990158999999
Q 000735 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 944 i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.+. . -..++++++||++|+||++|+.+|.+
T Consensus 130 -------------------~~~--~-------~~~~~~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 130 -------------------GMS--E-------VNGHALIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp -------------------EEE--E-------ETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -------------------HHH--H-------HCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -------------------798--7-------27996799978889899999999981
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.4e-14 Score=116.55 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|.+..+......++........+..... ...+.+|||+|+..+...+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~ 73 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH--------------FVTMQIWDTAGQERFRSLRT 73 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE--------------EEEEEEEECCCCGGGHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCC--------------EEEEEEECCCCCCEEHHHHH
T ss_conf 9999999997999999999849788765663232144455542584--------------01576520368600034556
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH-------HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0267665017862334688677899999-987-------04993799840134435765478812899999875999999
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL~-------~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
..+..+|++|+|+|.++....+....|. .+. ..++|+|+|.||+|+... ..+.
T Consensus 74 ~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-----~v~~-------------- 134 (174)
T d1wmsa_ 74 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-----QVST-------------- 134 (174)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-----SSCH--------------
T ss_pred HHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHC-----CCCH--------------
T ss_conf 665066157899864024664224668999999851025777209994132405432-----2769--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98989999999998178313331124789840399478766899015899999997
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
..+......+ ..+++++|||++|.||.++|..|++.+
T Consensus 135 -----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 135 -----EEAQAWCRDN--------------GDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp -----HHHHHHHHHT--------------TCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -----9999999974--------------997599976899949999999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.1e-13 Score=112.10 Aligned_cols=157 Identities=14% Similarity=0.077 Sum_probs=94.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
+...|+|+|+.++|||||+.+|++..+................+... ...+.||||+|+..+.
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~----------------~~~l~i~Dt~g~~~~~- 66 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQ----------------THLVLIREEAGAPDAK- 66 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTE----------------EEEEEEEECSSCCCHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCE----------------EEEEEEEECCCCCCCC-
T ss_conf 83799999989978999999997197877677554047787404856----------------8999985045321001-
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHH-H---HH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6640267665017862334688677899999-9---87---049937998401344357654788128999998759999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-L---LK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-l---L~---~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~ 945 (1324)
.++.+|++|||+|.++.-..+.+..|. . ++ ..++|+++|+||.|+...- ...+..
T Consensus 67 ----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~----~~~v~~---------- 128 (175)
T d2bmja1 67 ----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS----PRVVGD---------- 128 (175)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS----CCCSCH----------
T ss_pred ----CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH----HCCHHH----------
T ss_conf ----35566536888610121124415788888999864036786178875304740443----021059----------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999898999999999817831333112478984039947876689901589999999778
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 946 ~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~ 1005 (1324)
..+ ..+...- ..++++.|||++|.||.++|..|++.+..
T Consensus 129 -------~~~-~~~~~~~-------------~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 129 -------ARA-RALCADM-------------KRCSYYETCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp -------HHH-HHHHHTS-------------TTEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -------HHH-HHHHHHH-------------CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -------999-9999981-------------99749990789996999999999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=9.9e-14 Score=114.57 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=104.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-----CCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 979999908999878999999839643555-----575036520367113320000111013434567979999199984
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----agGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe 868 (1324)
++.|+|+|.+|+|||||+++|++....... ..+.|+++..+..+ ..+.+.||||||..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-----------------~~~~~~l~DtPG~~ 118 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-----------------NIPNVVFWDLPGIG 118 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-----------------SCTTEEEEECCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC-----------------CCCEEEEEECCCCC
T ss_conf 7179998999997899999995888677756789998870445531106-----------------89707998379854
Q ss_pred CHH-----HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCCCCCCHHHHHHHHH
Q ss_conf 114-----56640267665017862334688677899999987049937998401344357---6547881289999987
Q 000735 869 SFT-----NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG---WKTCRNAPIVKAIKQQ 940 (1324)
Q Consensus 869 ~F~-----~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~---w~~~~~adi~~~L~~q 940 (1324)
... .+....+..+|++|+|+| ..+..+....+..+...+.|+++|+||+|+... |......+....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~- 195 (400)
T d1tq4a_ 119 STNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD- 195 (400)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHH-
T ss_conf 33344999998743322659999658--888788999999999769987999708632101354322011227889999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 599999998989999999998178313331124789840399478766--89901589999999778
Q 000735 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQK 1005 (1324)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~t--GeGI~eLl~~L~~l~~~ 1005 (1324)
....+...+...++. ..+++++|+.. ..|++.|...|...++.
T Consensus 196 ----------ir~~~~~~l~~~~~~------------~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 196 ----------IRLNCVNTFRENGIA------------EPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp ----------HHHHHHHHHHHTTCS------------SCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred ----------HHHHHHHHHHHCCCC------------CCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ----------999999999874899------------897797337764515899999999998399
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=3.7e-14 Score=117.71 Aligned_cols=156 Identities=25% Similarity=0.322 Sum_probs=98.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE--EEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 97999990899987899999983964355557503--6520367113320000111013434567979999199984114
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
+.+|+|+|++|+|||||+++|++.++......+.| ..+..... . ....+.++|+||...+.
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~ 67 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E----------------GAYQAIYVDTPGLHMEE 67 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-E----------------TTEEEEEESSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEE-C----------------CCCEEEEECCCCCEECC
T ss_conf 619999979999899999999589863432688713788875550-5----------------87314760488730110
Q ss_pred HH---------HHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 56---------640267665017862334688677899999987049937998401344357654788128999998759
Q 000735 872 NL---------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 872 ~l---------r~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~ 942 (1324)
.. .......+++++|++|... ...+....+..+.....|+|+++||+|.+.. ..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~-----~~~---------- 131 (179)
T d1egaa1 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-----KAD---------- 131 (179)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-----HHH----------
T ss_pred HHHHHHHHHHCCCCCHHHCCEEEEEEECCC-CCHHHHHHHHHHHHCCCCEEEEEEEEECCCH-----HHH----------
T ss_conf 234444432102210211444679874576-6226789987754135751555543441210-----245----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999989899999999981783133311247898403994787668990158999999977
Q 000735 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 943 ~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
+......+... + ...+++++||++|.||.+|+..|..+++
T Consensus 132 ---------~~~~~~~~~~~-~------------~~~~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 132 ---------LLPHLQFLASQ-M------------NFLDIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ---------HHHHHHHHHTT-S------------CCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ---------HHHHHHHHHHH-C------------CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf ---------66676666642-3------------8997899827689899999999997488
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=6.1e-14 Score=116.11 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=103.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+.+|+...+.....+++.......+. ... ....+.||||+|++.|..++.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~-~~~--------------~~~~~~i~D~~g~~~~~~~~~ 68 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDT--------------QRIELSLWDTSGSPYYDNVRP 68 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEE-CSS--------------CEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCC-CCC--------------EEEEECCCCCCCCCCCCCCCC
T ss_conf 99999999959899999997299998658720101122102-564--------------477621333221111233554
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHH-HHHH-H--HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0267665017862334688677899-9999-8--7049937998401344357654788128999998759999999898
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNL-L--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E-~l~l-L--~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
..++.+|++|||+|+++.-..+... .|.. + ...++|+|+|.||+|+...+ .....+..+... ...
T Consensus 69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~------~~~~~~~~~~~~-----~V~ 137 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV------STLVELSNHRQT-----PVS 137 (179)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH------HHHHHHHTTTCC-----CCC
T ss_pred CHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------HHHHHHHHHHCC-----CCH
T ss_conf 100012344302303467779999887888874048851699987403443342------146777665417-----561
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999999817831333112478984039947876689-9015899999997
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~eLl~~L~~l~ 1003 (1324)
........... ..++++.|||++|. ||.++|..+...+
T Consensus 138 ~~e~~~~a~~~--------------~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 138 YDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHHHHHHH--------------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------CCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999999983--------------9975999707989849999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.55 E-value=1.4e-13 Score=113.38 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=101.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|+|.+++|||||+++|.+..+........+ ....+ ......+.++|++|+..+...+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~d~~~~~~~~~~~ 76 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS---NVEEI----------------VINNTRFLMWDIGGQESLRSSW 76 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCS---SCEEE----------------EETTEEEEEEECCC----CGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE---EEEEE----------------EECCEEEEEECCCCCCCCCCCH
T ss_conf 7999999999898999999966888730243333---57998----------------4053699995155310122111
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHH-HHHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 402676650178623346886778999-9998----70499379984013443576547881289999987599999998
Q 000735 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv~~QT~E~-l~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~ 949 (1324)
...+..++.+++|+|..+......... +..+ ...+.|+||++||+|+... ..
T Consensus 77 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~---------------- 133 (177)
T d1zj6a1 77 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC-------MT---------------- 133 (177)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-------CC----------------
T ss_pred HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-------CC----------------
T ss_conf 1332154156652144564214554200134432035553379999970563121-------76----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998178313331124789840399478766899015899999997
Q 000735 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 950 ~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
...+...+..... ....++++++||++|+||.+++.+|...+
T Consensus 134 --~~~i~~~~~~~~~----------~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 134 --VAEISQFLKLTSI----------KDHQWHIQACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp --HHHHHHHHTGGGC----------CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH----------HHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --9999999999766----------74698899996988979999999999973
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=1.6e-14 Score=120.44 Aligned_cols=99 Identities=38% Similarity=0.612 Sum_probs=93.6
Q ss_pred CCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEE-ECCEEECCCCCCCCCCE
Q ss_conf 45451169999998086159999998106528988988056896057765303898872001-02210000000122460
Q 000735 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGI 1092 (1324)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~r-Vk~~~~~~kev~aa~gv 1092 (1324)
+.+.+++|+|++..+|+|++++++|++|+|+.||.|++++++|++.+.||+||+|+|+.++| .+..|.+++++.+++++
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHHCCCCCCEECCEEECCCCE
T ss_conf 98737999999973799806999997687835999999067477998744034885245642003688097698079865
Q ss_pred EEECCCCCCCCCCCCEEEEC
Q ss_conf 56015653234798439929
Q 000735 1093 KITAQGLEHAIAGTGLYVVG 1112 (1324)
Q Consensus 1093 ki~~~gL~~a~aG~~~~v~~ 1112 (1324)
+|.++||+.++||+.|+|++
T Consensus 82 kI~a~gLe~v~aG~~~~VV~ 101 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLRVVT 101 (101)
T ss_dssp EEECSSCTTBCTTCEEEECS
T ss_pred EEECCCCCCCCCCCEEEEEC
T ss_conf 99819987678998889869
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.53 E-value=7.5e-14 Score=115.47 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+++|.+..+...... ......... .....+.+||+||+..+...+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~---~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCC---SSCCEEEEE----------------CSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC---EEEEEEEEE----------------EEEEEEEEECCCCCCCCHHHHH
T ss_conf 899999999898999999965988862211---146799973----------------0169998862788400015666
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHH-HHHH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999-9998----704993799840134435765478812899999875999999989
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
+.+..++++|+|+|..+-...+.... +..+ .....|++++.||+|+...+ ..
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~------~~----------------- 119 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------NA----------------- 119 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------CH-----------------
T ss_pred HHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC------CH-----------------
T ss_conf 6420532689998742737777777777888776404575499975102443444------28-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 8999999999817831333112478984039947876689901589999999
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
..+.. ..+.... ....+++++|||+||+||.+++++|...
T Consensus 120 --~~i~~---~~~~~~~-------~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 120 --AEITD---KLGLHSL-------RHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp --HHHHH---HTTGGGC-------SSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred --HHHHH---HHHHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf --99999---9999988-------6379889996798897989999999951
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.2e-13 Score=112.02 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC--CCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCC---
Q ss_conf 9997999990899987899999983964355--55750365203671133200001110134345679799991999---
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG--EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--- 866 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g--eagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPG--- 866 (1324)
-+.|.|+|+|++|+|||||+++|++...... ..++.+........... ..+...++++
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 76 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-----------------KRLVDLPGYGYAE 76 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-----------------EEEEECCCCC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCEECCCC-----------------CCEEEEECCCCCC
T ss_conf 66978999889999899999998589854754566650231110111465-----------------4203420012211
Q ss_pred ---C-----CCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---8-----41145664026766501786233468867789999998704993799840134435765478812899999
Q 000735 867 ---H-----ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 867 ---H-----e~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~ 938 (1324)
. ..+...........+.++++.+...+...+....+..+.....++++++||+|++.. .....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~------~~~~~--- 147 (188)
T d1puia_ 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS------GARKA--- 147 (188)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH------HHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCH------HHHHH---
T ss_conf 024454444455565565420035899840122331267778888764033222011133311588------88999---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 87599999998989999999998178313331124789840399478766899015899999997
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
.+..+...+. .++..++++++||++|.||++|+..|..|+
T Consensus 148 ------------~~~~~~~~l~-------------~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 148 ------------QLNMVREAVL-------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ------------HHHHHHHHHG-------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH-------------HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ------------9999999998-------------608998189996799988999999999970
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.7e-13 Score=112.77 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=104.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999089998789999998396435555750365203671133200001110134345679799991999841145664
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~ 875 (1324)
.|+|+|..++|||||+++|++..+... +..++.+.... .+....+.++||+|+..|..++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEEL--------------AIGNIKFTTFDLGGHIQARRLWK 62 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEE--------------CCTTCCEEEEECCCSGGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEE-----ECEEEEEEEEE--------------CCCCEEEEEEEECCCHHHHHHHH
T ss_conf 899999999999999999958998715-----02462768995--------------05875678874032113466676
Q ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHH-H----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02676650178623346886778999999-8----704993799840134435765478812899999875999999989
Q 000735 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-L----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1324)
Q Consensus 876 rg~s~aDiaILVVDa~~Gv~~QT~E~l~l-L----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~ 950 (1324)
.....++.+++++|..+-........+.. + ...+.|++++.||+|+.... .
T Consensus 63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------~------------------ 118 (166)
T d2qtvb1 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------S------------------ 118 (166)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------C------------------
T ss_pred HHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC------C------------------
T ss_conf 5400004642300033402103456787763200103785499984133641237------8------------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999981783133311247898403994787668990158999999
Q 000735 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 951 ~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
...+...+.........+. .....+++++|||++|+||.++|.||.+
T Consensus 119 -~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 119 -EAELRSALGLLNTTGSQRI---EGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp -HHHHHHHHTCSSCCC---C---CSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf -9999998633234688864---2447978999337889899999999848
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.52 E-value=7.7e-13 Score=107.97 Aligned_cols=158 Identities=21% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
+...|+|+|.+++|||||+++|.+..+.... .|.......+... ...+.++|+||+..+..
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 64 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYK----------------NLKFQVWDLGGLTSIRP 64 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC---CCSSEEEEEEEET----------------TEEEEEEEECCCGGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCEEEEEECCC----------------CEEEEEEECCCCCCCCC
T ss_conf 6329999999998999999999679876034---1321356540368----------------66888750454111222
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHH-HH----HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6640267665017862334688677899999-98----704993799840134435765478812899999875999999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-lL----~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
.....+..++++++++|............+. .. .....|+++++||+|+.... ..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~------~~-------------- 124 (169)
T d1upta_ 65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM------TS-------------- 124 (169)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------CH--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCC------CH--------------
T ss_conf 0012321013321134443010001000011466665303554179998605541101------17--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989899999999981783133311247898403994787668990158999999977
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
..+...+...-. ....+++++|||++|+||.+++.+|...+.
T Consensus 125 -----~~i~~~~~~~~~----------~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 125 -----SEMANSLGLPAL----------KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp -----HHHHHHHTGGGC----------TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH----------HCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----899999877887----------638988999758889798999999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-13 Score=112.20 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=93.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECC---CCCCH
Q ss_conf 79999908999878999999839643555-575036520367113320000111013434567979999199---98411
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP---GHESF 870 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTP---GHe~F 870 (1324)
..|+|+|..++|||||+.+|.+....... ...+........+..+. ....+.+||+| |++.|
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~~g~e~~ 69 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG--------------ESATIILLDMWENKGENEW 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT--------------EEEEEEEECCTTTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCC--------------CEEEEEEECCCCCCCCCCC
T ss_conf 79999998992999999999728677566566255310000000488--------------5155556214431222212
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 45664026766501786233468867789999-99870----49937998401344357654788128999998759999
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1324)
Q Consensus 871 ~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~lL~~----~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~ 945 (1324)
++..+++.+|++|||+|+++.........| ..+.. .++|+|||.||+|+... +....
T Consensus 70 --~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~v~~------------ 131 (172)
T d2g3ya1 70 --LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC----REVSV------------ 131 (172)
T ss_dssp --HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG----CCSCH------------
T ss_pred --CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC----CCCCH------------
T ss_conf --233333344203343112200012212355555430024677129998404453333----45427------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99989899999999981783133311247898403994787668990158999999977
Q 000735 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1324)
Q Consensus 946 ~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~ 1004 (1324)
.........+ .++++.|||++|.||.+++..|++.+.
T Consensus 132 -------~~~~~~a~~~---------------~~~~~e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 132 -------SEGRACAVVF---------------DCKFIETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp -------HHHHHHHHHH---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -------7889999876---------------985999828999699999999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=5.1e-13 Score=109.27 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=95.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
-..|+|+|..++|||||+.+|.+..+.......++.......+... .....+.+||++|+..+...
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 67 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID--------------GERIKIQLWDTAGQERFRKS 67 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET--------------TEEEEEEEEECCCSHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE--------------CCCEEEEEEECCCCHHHCCC
T ss_conf 8999999999929899999997399988647642422001344564--------------02217999850573110321
Q ss_pred -HHHCCCCCCCEEEEECCCCCCCHHHHH-HHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -640267665017862334688677899-999987----04993799840134435765478812899999875999999
Q 000735 874 -RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 874 -r~rg~s~aDiaILVVDa~~Gv~~QT~E-~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
+...++.+|++|||+|+.+.-....+. .+..+. ..++|++|+.||+|+.... .-+
T Consensus 68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~----~v~--------------- 128 (165)
T d1z06a1 68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI----QVP--------------- 128 (165)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC----CSC---------------
T ss_pred CCEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCC----CHH---------------
T ss_conf 2103642788249999852356666554212787763258997199992135500101----216---------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC---CCHHHHHHHH
Q ss_conf 989899999999981783133311247898403994787668---9901589999
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG---EGIPDLLLLL 999 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tG---eGI~eLl~~L 999 (1324)
...+......+ .++++.|||+|| +||.++|..|
T Consensus 129 ----~~~~~~~~~~~---------------~~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 129 ----TDLAQKFADTH---------------SMPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp ----HHHHHHHHHHT---------------TCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred ----HHHHHHHHHHC---------------CCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf ----99999999987---------------9989998034297380799999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.46 E-value=5.7e-13 Score=108.94 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
+...|+|+|..++|||||+++|++..+.... .|.......+.+ ....+.++|++|+..+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~---~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 72 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTI----------------AGMTFTTFDLGGHIQARR 72 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEE----------------TTEEEEEEEECC----CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCCCEEEEEE----------------CCCCCCCCCCCCHHHHHH
T ss_conf 7778999999998989999999678875224---023343258974----------------362112234440045656
Q ss_pred HHHHCCCCCCCEEEEECCCCCCC-HHHHHHHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66402676650178623346886-77899999987----04993799840134435765478812899999875999999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~-~QT~E~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~e 947 (1324)
.+......++++++|+|..+... .+....+..+. ..++|+++++||+|+.... +
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~------~--------------- 131 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------S--------------- 131 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------C---------------
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC------C---------------
T ss_conf 7765402322011245315742037789999875101235787469987324751218------8---------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 989899999999981783133311--2478984039947876689901589999999
Q 000735 948 FNMRLVQIVTQLKEQGMNTELYYK--NKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 948 f~~~i~~I~~~l~~~Gl~~e~~~~--~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
...+...+............ ..-....+++++|||++|+||.++|.||.+.
T Consensus 132 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 132 ----EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp ----HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf ----99999997204421333234677751378779998588898999999999984
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=4.6e-13 Score=109.61 Aligned_cols=71 Identities=25% Similarity=0.632 Sum_probs=67.0
Q ss_pred EECEEEEECCCCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 1030577615631268998599899841156219968823992999886500001375424323798119959
Q 000735 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1252 v~p~~l~i~~~~vf~~k~~~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
||||.|+|+|+|+||.++|+|+|++|..|+|+.|++|++..+. .+|+|.||+.+++++++|..|++|||+|
T Consensus 2 v~P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~--~~g~VksIq~~~~~v~~A~~G~~Vai~I 72 (128)
T d1g7sa2 2 IKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGE--TVGTVESMQDKGENLKSASRGQKVAMAI 72 (128)
T ss_dssp CCCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSC--EEEEEEEEEETTEEESEEETTCCEEEEE
T ss_pred CEEEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCCC--CEEEEEEEEECCCCCCEECCCCEEEEEE
T ss_conf 0517999768767527998599999935263089979988999--3589999999882111782899899997
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2.2e-11 Score=97.22 Aligned_cols=178 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
...|+|||..++||||||.+|....+.. .+ .+|..+.... +....+.+|||+|+..|...
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~--~p----TiG~~~~~~~--------------~~~~~~~~~d~~g~~~~~~~ 61 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGSG--VP----TTGIIEYPFD--------------LQSVIFRMVDVGGQRSERRK 61 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSSC--CC----CCSCEEEEEE--------------CSSCEEEEEECCCSTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCC--CC----EEEEEEEEEE--------------CCCEEEEECCCCCCCCCCCC
T ss_conf 0599999999998899999996799999--81----6627999984--------------02014442034664211343
Q ss_pred HHHCCCCCCCEEEEECCCCCCC-----------HHHHHHHHHHH----HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6402676650178623346886-----------77899999987----04993799840134435765478812899999
Q 000735 874 RSRGSGLCDIAILVVDIMHGLE-----------PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1324)
Q Consensus 874 r~rg~s~aDiaILVVDa~~Gv~-----------~QT~E~l~lL~----~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~ 938 (1324)
+...++.++++++|++..+... ...+..|..+. ..++|+++++||+|+...-. ....+.....
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~--~~~~~~~~~~ 139 (200)
T d2bcjq2 62 WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKI--MYSHLVDYFP 139 (200)
T ss_dssp GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHT--TTSCHHHHST
T ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCC--CCHHHHHHCC
T ss_conf 32002343204676403523321344313001599999999997114206851798613011566514--4147777463
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 87599999998989999999998178313331124789840399478766899015899999997
Q 000735 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1324)
Q Consensus 939 ~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~ 1003 (1324)
... ............+...+...... ....+.++.|||++|.||..+|..|...+
T Consensus 140 ~~~-~~~~~~~~~~~~i~~~f~~~~~~---------~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 140 EYD-GPQRDAQAAREFILKMFVDLNPD---------SDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp TCC-SCSSCHHHHHHHHHHHHHTTCSC---------TTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCC---------CCCCEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 103-87335999999999999974536---------79961787748981781999999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.5e-11 Score=96.79 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=100.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 97999990899987899999983964355557503652036711332000011101343456797999919998411456
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~l 873 (1324)
...|+|||..++|||||+.+|....+.. + .+....+.. ....+.+|||.|++.|..+
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~--~~~~~~~~~----------------~~~~~~i~D~~Gq~~~~~~ 58 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----T--GIVETHFTF----------------KDLHFKMFDVGGQRSERKK 58 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSCC-----C--SEEEEEEEE----------------TTEEEEEEEECCSGGGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCC-----C--CEEEEEEEE----------------EEEEEEEECCCCCCCCCCC
T ss_conf 1699999999988899999884089797-----2--479999974----------------3312210024665100111
Q ss_pred HHHCCCCCCCEEEEECCCCCCCH-----------HHHHHHHHHH----HCCCCEEEEEECCCCCCC------CC-----C
Q ss_conf 64026766501786233468867-----------7899999987----049937998401344357------65-----4
Q 000735 874 RSRGSGLCDIAILVVDIMHGLEP-----------QTIESLNLLK----MRNTEFIVALNKVDRLYG------WK-----T 927 (1324)
Q Consensus 874 r~rg~s~aDiaILVVDa~~Gv~~-----------QT~E~l~lL~----~~~iPiIVviNKiD~~~~------w~-----~ 927 (1324)
+..+++.++++++|+|..+.... .....|..+. ..++|+++++||+|+... +. .
T Consensus 59 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~ 138 (195)
T d1svsa1 59 WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEY 138 (195)
T ss_dssp GGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred HHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHH
T ss_conf 11014677536668750342117777643678999999999996112027987899815321455413534887876640
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 788128999998759999999898999999999817831333112478984039947876689901589999999
Q 000735 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 928 ~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
....... .....+...+...... .....+.++.|||++|.||..+|..+...
T Consensus 139 ~~~~~~~---------------~~~~~~~~~f~~~~~~--------~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 139 AGSNTYE---------------EAAAYIQCQFEDLNKR--------KDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp CSCSSHH---------------HHHHHHHHHHHTTCSC--------TTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHH---------------HHHHHHHHHHHHHHCC--------CCCCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 5864389---------------9999999999997315--------67895055888868878399999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=7.4e-11 Score=93.28 Aligned_cols=178 Identities=17% Similarity=0.094 Sum_probs=100.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99799999089998789999998396435555750365203671133200001110134345679799991999841145
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~ 872 (1324)
|-..|+|+|..++|||||+.+|.. .....++| .+....+... ...+.+|||+|++.+..
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f---~~~~~pTi--G~~~~~~~~~----------------~~~~~~~D~~gq~~~~~ 59 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRI---IHGQDPTK--GIHEYDFEIK----------------NVPFKMVDVGGQRSERK 59 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH---HHSCCCCS--SEEEEEEEET----------------TEEEEEEEECC------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC---CCCCCCEE--EEEEEEEEEE----------------EEEEEEECCCCEEEECC
T ss_conf 958999998999998999998846---89888724--1499999601----------------44566513531144114
Q ss_pred HHHHCCCCCCCEEEEECCCCCCC--------HHHHHHH---HH-H---HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 66402676650178623346886--------7789999---99-8---70499379984013443576547881289999
Q 000735 873 LRSRGSGLCDIAILVVDIMHGLE--------PQTIESL---NL-L---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 873 lr~rg~s~aDiaILVVDa~~Gv~--------~QT~E~l---~l-L---~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L 937 (1324)
.+..+.+.++++++|++..+... ....+++ .. + ...++|+|+++||+|+...-. ...++....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~f 137 (200)
T d1zcba2 60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV--QVVSIKDYF 137 (200)
T ss_dssp -CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTCCGGGTC
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHC--CCCHHHHHC
T ss_conf 233201000036799984770102310100114467889999996176546963999823114566502--450787747
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 98759999999898999999999817831333112478984039947876689901589999999
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1324)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l 1002 (1324)
.+. ......+......+...+....-+ .....+.++.|||+++.||..+|..+...
T Consensus 138 ~~~-~~~~~~~~~~~~~~~~~f~~~~~~--------~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 138 LEF-EGDPHCLRDVQKFLVECFRGKRRD--------QQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp TTC-CSCTTCHHHHHHHHHHHHHTTCSS--------CC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 213-689626999999999999985558--------78884677782546758999999999999
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.18 E-value=1.1e-11 Score=99.27 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=60.3
Q ss_pred HCCCEEECEEEEECCCCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 30511103057761563126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1247 AADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1247 ~~~~av~p~~l~i~~~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
..|.| .|+. +|. ++...||||+|++|.|++++.++| |++.+||.|.|.||+|++++|.+|++|+||||.+
T Consensus 5 ~~G~A------~V~~--vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l 76 (99)
T d1d1na_ 5 VIGQA------EVRQ--TFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTI 76 (99)
T ss_dssp EEEEE------EECC--CCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEEC
T ss_pred EEEEE------EEEE--EEECCCCCEEEEEEEEECEECCCCCEEEECCCEEEEEEEEEEECCCCCCCCEECCCEEEEEEE
T ss_conf 99999------9989--999489937989999818480588427823987999858865014331048855782888996
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.2e-10 Score=91.78 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=93.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCCCCHHH----------------------HC
Q ss_conf 99979999908999878999999839643555-57503652036711332000011----------------------10
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTR----------------------EL 848 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~e~i~~~~~----------------------~i 848 (1324)
-|.++|+|.|.+|+|||||+++|.......|. .+-++.++...+........++. .+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 98328974389999899999999999975698332203777610006515541367887405654101565553444420
Q ss_pred C-------CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 1-------343456797999919998411456640267665017862334688677899999987049937998401344
Q 000735 849 K-------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 849 ~-------~~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~ 921 (1324)
. .-...-.+.+.||.|.|.--- -......+|..|||+.+..|-.-|.+.... ..++-|||+||+|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi----~e~aDi~VvNKaD~ 204 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGL----MEVADLIVINKDDG 204 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHH----HHHCSEEEECCCCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC---CHHHHHCCCEEEEEECCCCCHHHHHHCHHH----HCCCCEEEEEEECC
T ss_conf 33205789998864998278750321121---023440354389973688725555422014----20155799986225
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 35765478812899999875999999989899999999981783133311247898403994787668990158999999
Q 000735 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 922 ~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
.. .+..... ...+...+....-. . . ....+|+.|||++|+||++|+..|..
T Consensus 205 ~~-------~~~~~~~--------------~~~~~~al~~~~~~-~-----~--~w~p~V~~~SA~~g~Gi~eL~~~I~~ 255 (327)
T d2p67a1 205 DN-------HTNVAIA--------------RHMYESALHILRRK-Y-----D--EWQPRVLTCSALEKRGIDEIWHAIID 255 (327)
T ss_dssp TC-------HHHHHHH--------------HHHHHHHHHHSCCS-B-----T--TBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred CC-------HHHHHHH--------------HHHHHHHHHHCCCC-C-----C--CCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 54-------5778999--------------99999986322557-7-----7--77650489984189998999999999
Q ss_pred HHH
Q ss_conf 977
Q 000735 1002 WTQ 1004 (1324)
Q Consensus 1002 l~~ 1004 (1324)
+..
T Consensus 256 ~~~ 258 (327)
T d2p67a1 256 FKT 258 (327)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.13 E-value=6e-10 Score=86.55 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=74.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 79999908999878999999839643555575036520367113320000111013434567979999199984114566
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr 874 (1324)
..|+|||..++||||||.+|....+. + |..+....+.... ..+.+||++|+..+...+
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~----p--TiG~~~~~~~~~~----------------~~~~~~D~~Gq~~~r~~w 64 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVV----L--TSGIFETKFQVDK----------------VNFHMFDVGGQRDERRKW 64 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCC----C--CCSCEEEEEEETT----------------EEEEEEECCCSTTTTTGG
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC----C--CCCEEEEEEEECC----------------EEEEEEECCCCCEECCCH
T ss_conf 77999989999889999989509827----8--8886789999776----------------999998637651220112
Q ss_pred HHCCCCCCCEEEEECCCCCC--------CHHHHHH---HHHHH----HCCCCEEEEEECCCCC
Q ss_conf 40267665017862334688--------6778999---99987----0499379984013443
Q 000735 875 SRGSGLCDIAILVVDIMHGL--------EPQTIES---LNLLK----MRNTEFIVALNKVDRL 922 (1324)
Q Consensus 875 ~rg~s~aDiaILVVDa~~Gv--------~~QT~E~---l~lL~----~~~iPiIVviNKiD~~ 922 (1324)
..+...++++|+|+|...-. .....++ |..+. ..++|+||++||+|+.
T Consensus 65 ~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 65 IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp GGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHH
T ss_conf 342256651379997254101322321057789989999998617543798389982046665
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.04 E-value=7.5e-10 Score=85.81 Aligned_cols=178 Identities=18% Similarity=0.159 Sum_probs=94.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCCCCHHH----------------------HC
Q ss_conf 99979999908999878999999839643555-57503652036711332000011----------------------10
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTR----------------------EL 848 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~e~i~~~~~----------------------~i 848 (1324)
-+.++|+|.|.+|+|||||+++|.......+. .+-++.++...+.-...+..+++ .+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 98159861179988899999999998763687513443465547877506410133788750344011266534533110
Q ss_pred CC-------CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 13-------43456797999919998411456640267665017862334688677899999987049937998401344
Q 000735 849 KA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 849 ~~-------~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~ 921 (1324)
.. ....-.+.+.||.|.|---- -......+|+.|+|+....|-.-|.+..- ...++-|||+||+|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~g----ilE~aDi~vvNKaD~ 201 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG----IFELADMIAVNKADD 201 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT----HHHHCSEEEEECCST
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEHHHHHH---HHHHHCCCCEEEEEEECCCHHHHHHHHHH----HHHHHHEEEEECCCC
T ss_conf 67789999764148998589863233321---46653366548998614324556563234----765402046754245
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 35765478812899999875999999989899999999981783133311247898403994787668990158999999
Q 000735 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1324)
Q Consensus 922 ~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1324)
... ......+.. .....+.. + .........+++.+||++|+||++|+..|..
T Consensus 202 ~~~------~~~~~~~~~--------------~~~~~l~~--~------~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~ 253 (323)
T d2qm8a1 202 GDG------ERRASAAAS--------------EYRAALHI--L------TPPSATWTPPVVTISGLHGKGLDSLWSRIED 253 (323)
T ss_dssp TCC------HHHHHHHHH--------------HHHHHHTT--B------CCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred CCC------HHHHHHHHH--------------HHHHHHHC--C------CCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 430------689999999--------------99998634--5------5544578773699982179987999999999
Q ss_pred HHH
Q ss_conf 977
Q 000735 1002 WTQ 1004 (1324)
Q Consensus 1002 l~~ 1004 (1324)
+..
T Consensus 254 ~~~ 256 (323)
T d2qm8a1 254 HRS 256 (323)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.00 E-value=1e-08 Score=77.34 Aligned_cols=114 Identities=18% Similarity=0.062 Sum_probs=73.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCH--
Q ss_conf 9799999089998789999998396435-5557503652036711332000011101343456797999919998411--
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F-- 870 (1324)
.+.|+|+|.+|+|||||++.|++..+.. +...+.|........... ...|+||||||..+.
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~----------------g~~i~viDTPGl~~~~~ 95 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA----------------GFTLNIIDTPGLIEGGY 95 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET----------------TEEEEEEECCCSEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEC----------------CEEEEEEEEECCCCCCC
T ss_conf 74899989999869999999858984133588976046789889863----------------38899975213467752
Q ss_pred -----HHHHH--HCCCCCCCEEEEECCCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
Q ss_conf -----45664--026766501786233468-86778999999870-----4993799840134435
Q 000735 871 -----TNLRS--RGSGLCDIAILVVDIMHG-LEPQTIESLNLLKM-----RNTEFIVALNKVDRLY 923 (1324)
Q Consensus 871 -----~~lr~--rg~s~aDiaILVVDa~~G-v~~QT~E~l~lL~~-----~~iPiIVviNKiD~~~ 923 (1324)
..... ......|.++||+.++.. +.......+..+.. ...++||++|++|...
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 96 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEEEECCCCCC
T ss_conf 489999999999856898769999978887789999999999998732656638899998864477
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.5e-08 Score=76.23 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE-----EEEEE------EEECCCCC--C---CHHHHC-------
Q ss_conf 9997999990899987899999983964355557503-----65203------67113320--0---001110-------
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGA------TYFPAENI--R---ERTREL------- 848 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT-----q~iga------~~~~~e~i--~---~~~~~i------- 848 (1324)
+.-|.|+|+|+..+||||||++|++..+.....+..| ..++. .+...... . .....+
T Consensus 24 ~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_conf 88886999768989799999999689868878974035788999723565226898689971478899999999999885
Q ss_pred -C-----CC----CCC---CCCCEEEEECCCCCCH-------------HHHHHHCCCCCCC-EEEEECCCCCCCHHH-HH
Q ss_conf -1-----34----345---6797999919998411-------------4566402676650-178623346886778-99
Q 000735 849 -K-----AN----ATL---KVPGLLVIDTPGHESF-------------TNLRSRGSGLCDI-AILVVDIMHGLEPQT-IE 900 (1324)
Q Consensus 849 -~-----~~----~~~---~~~~i~iIDTPGHe~F-------------~~lr~rg~s~aDi-aILVVDa~~Gv~~QT-~E 900 (1324)
. .. ..+ ..++++||||||.... ..+...++..++. +++|+++...+..+. ..
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~ 183 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 07776767760799974799887257716874334667763147999999999986275603566403454211259999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 9999870499379984013443576
Q 000735 901 SLNLLKMRNTEFIVALNKVDRLYGW 925 (1324)
Q Consensus 901 ~l~lL~~~~iPiIVviNKiD~~~~w 925 (1324)
.++.+.....++|+|+||+|++..|
T Consensus 184 ~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 184 IAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCH
T ss_conf 9997386778136677026655313
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.86 E-value=3e-08 Score=73.96 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE-----EEEEEEEECC----------------CCCCCH----
Q ss_conf 479997999990899987899999983964355557503-----6520367113----------------320000----
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGATYFPA----------------ENIRER---- 844 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT-----q~iga~~~~~----------------e~i~~~---- 844 (1324)
..+-.|.|+|+|+..+||||||+.|++..+.....+..| ...+...... ......
T Consensus 20 ~~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (306)
T d1jwyb_ 20 DPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (306)
T ss_dssp CTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHH
T ss_conf 77888859998189897999999996899788789754068889999457766676530656677626886223789999
Q ss_pred --HHH-----------CCC---CCC---CCCCCEEEEECCCCCCH-------------HHHHHHCCCCCCCEEEEE-CCC
Q ss_conf --111-----------013---434---56797999919998411-------------456640267665017862-334
Q 000735 845 --TRE-----------LKA---NAT---LKVPGLLVIDTPGHESF-------------TNLRSRGSGLCDIAILVV-DIM 891 (1324)
Q Consensus 845 --~~~-----------i~~---~~~---~~~~~i~iIDTPGHe~F-------------~~lr~rg~s~aDiaILVV-Da~ 891 (1324)
... ... ... ...++++||||||.... ..+...++..++.+||+| ++.
T Consensus 100 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~ 179 (306)
T d1jwyb_ 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (306)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999998742777765665069982478988806865888644366884035899999999999827775168763256
Q ss_pred CCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 6886-778999999870499379984013443576
Q 000735 892 HGLE-PQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1324)
Q Consensus 892 ~Gv~-~QT~E~l~lL~~~~iPiIVviNKiD~~~~w 925 (1324)
..+. ..+...++.+...+.++|+|+||+|.+..|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp SCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCH
T ss_conf 31003499999997386788589998204445316
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=2.5e-07 Score=67.07 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEE--EEEEEE-CCCCCCCHHHHCCC-----CCCCCCCCEEEEECCCC
Q ss_conf 99999089998789999998396435555750365--203671-13320000111013-----43456797999919998
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYF-PAENIRERTRELKA-----NATLKVPGLLVIDTPGH 867 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~--iga~~~-~~e~i~~~~~~i~~-----~~~~~~~~i~iIDTPGH 867 (1324)
-|+|+|.+++|||||+++|++.+...+..+..|.. +|.++. +.......+...+. ...+....+.|+|+||.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl 81 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 17688999998999999997889703269977555862623277870465640036865332345556650799988974
Q ss_pred CC-------HHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 41-------14566402676650178623346
Q 000735 868 ES-------FTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 868 e~-------F~~lr~rg~s~aDiaILVVDa~~ 892 (1324)
.. ..+...+.++.||++|+|||+..
T Consensus 82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 44300010058999974305527899851556
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.30 E-value=7.2e-07 Score=63.69 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=63.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEE--EEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC-
Q ss_conf 97999990899987899999983964-3555575036--5203671133200001110134345679799991999841-
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGITq--~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~- 869 (1324)
+..|+|+|.+++|||||+++|+..++ .....++.|. .+|...+|.......+. +.....+....+.|+|.||...
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~-~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCE-AYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHH-HHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH-CCCCCCEECCCCEEEECCCCCCC
T ss_conf 73799978999989999999977898774789966703876899606634001431-05677444254314413544566
Q ss_pred ------HHHHHHHCCCCCCCEEEEECCCC
Q ss_conf ------14566402676650178623346
Q 000735 870 ------FTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 870 ------F~~lr~rg~s~aDiaILVVDa~~ 892 (1324)
..+.....++.||++|+||++..
T Consensus 89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 40135508999998612462699985147
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.28 E-value=6.2e-07 Score=64.20 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=63.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCC--CEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC---
Q ss_conf 7999990899987899999983964355557--50365203671133200001110134345679799991999841---
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAG--GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~geag--GITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~--- 869 (1324)
..|+|+|-+++|||||+++|+...+..+..+ +|..++|...+|-......+..... -.+....+.|+|.||...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~-~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP-ERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCC-SEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCC-CCEEEEEEEEEECCCCCCCCC
T ss_conf 3488889999988999999977997413699888778458996435868989774388-845521689997263178853
Q ss_pred ----HHHHHHHCCCCCCCEEEEECCCC
Q ss_conf ----14566402676650178623346
Q 000735 870 ----FTNLRSRGSGLCDIAILVVDIMH 892 (1324)
Q Consensus 870 ----F~~lr~rg~s~aDiaILVVDa~~ 892 (1324)
+.+...+.++.||++|+|||+..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf 578765899999985062588851468
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.13 E-value=4.1e-06 Score=58.14 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCEEEE----------------EEEEEECCCCCCCHHHHCCC---CC
Q ss_conf 9979999908999878999999839643555-5750365----------------20367113320000111013---43
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ----------------IGATYFPAENIRERTRELKA---NA 852 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~----------------iga~~~~~e~i~~~~~~i~~---~~ 852 (1324)
++-+|+++|..|+||||.+-+|-..-...+. .+-||.+ ++..++...........+.. ..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~ 90 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 90 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99899998999999899999999999977993699972023551567898740146842230244102447899999874
Q ss_pred CCCCCCEEEEECCCCCCHHH---HH---H--HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 45679799991999841145---66---4--0267665017862334688677899999987049937998401344357
Q 000735 853 TLKVPGLLVIDTPGHESFTN---LR---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG 924 (1324)
Q Consensus 853 ~~~~~~i~iIDTPGHe~F~~---lr---~--rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~ 924 (1324)
......+.||||||...+.. .+ . .....++-.+||+++..|.... ..........++.- +++||+|...
T Consensus 91 ~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~~~-lI~TKlDet~- 167 (211)
T d1j8yf2 91 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKIGT-IIITKMDGTA- 167 (211)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTTEE-EEEECTTSCS-
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHCCCCCCE-EEEECCCCCC-
T ss_conf 02677369985377676313667899999998625976689998435684067-78766530367553-7886036888-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 654788128999998759999999898999999999817831333112478984039947876689901589
Q 000735 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996 (1324)
Q Consensus 925 w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl 996 (1324)
++..++......+ +|+..+| +|++|++|.
T Consensus 168 --------------------------~~G~~l~~~~~~~---------------lPi~~it--~Gq~v~DL~ 196 (211)
T d1j8yf2 168 --------------------------KGGGALSAVAATG---------------ATIKFIG--TGEKIDELE 196 (211)
T ss_dssp --------------------------CHHHHHHHHHTTT---------------CCEEEEE--CSSSTTCEE
T ss_pred --------------------------CCCHHHHHHHHHC---------------CCEEEEE--CCCCCCCCC
T ss_conf --------------------------6149988999989---------------4979996--799800175
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=8.9e-06 Score=55.62 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---CC
Q ss_conf 545116999999808615999999810652898898805689605776530389887200102210000000122---46
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa---~g 1091 (1324)
.||++.|..+|.+.|.|+++++.|.+|+|+.||.+.+.++. ...+|+++++|++.+..| ..
T Consensus 2 kP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~~ 65 (94)
T d1f60a1 2 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG----------------VTTEVKSVEMHHEQLEQGVPGDN 65 (94)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT----------------EEEEEEEEEETTEECSCBCTTCE
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 98898998899808822899875611468789899988678----------------32799999995847687648985
Q ss_pred EEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 056015653234798439929986
Q 000735 1092 IKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1092 vki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
+.+.+.++.......+++++.+..
T Consensus 66 v~l~l~~i~~~~i~rG~vl~~~~~ 89 (94)
T d1f60a1 66 VGFNVKNVSVKEIRRGNVCGDAKN 89 (94)
T ss_dssp EEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEECCCHHHCCCCCEEECCCC
T ss_conf 999985760875478789878999
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=9.2e-06 Score=55.49 Aligned_cols=87 Identities=15% Similarity=0.362 Sum_probs=70.2
Q ss_pred CCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---C
Q ss_conf 4545116999999808615999999810652898898805689605776530389887200102210000000122---4
Q 000735 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---Q 1090 (1324)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa---~ 1090 (1324)
..||+++|.++|.+.|.|+++++.|.+|+|+.||.+.+.+... ....+|+++++|++.+..| .
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~--------------~~~~~vksi~~~~~~~~~a~aG~ 68 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE--------------TQKSTCTGVEMFRKLLDEGRAGE 68 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSS--------------CEEEEEEEEEETTEEESEEETTC
T ss_pred CCCEEEEEEEEEECCCEEEEEEEEECCCEECCCCEEEEECCCC--------------CCEEEEEEEEECCCCCCCCCCCC
T ss_conf 8788989897998298579889786367681899999972799--------------81899999999884705537888
Q ss_pred CEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 605601565323479843992998
Q 000735 1091 GIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1091 gvki~~~gL~~a~aG~~~~v~~~~ 1114 (1324)
.+.+.+.|++......+++++.|.
T Consensus 69 ~v~l~L~gi~~~~i~rG~vl~~pG 92 (92)
T d1efca1 69 NVGVLLRGIKREEIERGQVLAKPG 92 (92)
T ss_dssp EEEEEETTCCGGGCCTTCEEECTT
T ss_pred EEEEEECCCCHHHCCCCCEEECCC
T ss_conf 899998488899807855996799
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.00 E-value=9.9e-05 Score=47.85 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=57.9
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56640267665017862334688677899999987049937998401344357654788128999998759999999898
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
......+..+|++|+|+|+..++.........+++ +.|+|+++||+|++.. ..
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~-------~~------------------ 59 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA-------AV------------------ 59 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH-------HH------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCH-------HH------------------
T ss_conf 99999997699999998888998988989999986--9985999987368866-------77------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998178313331124789840399478766899015899999997786
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~ 1006 (1324)
.......|.. ..+.++++|+.++.|+..+...+..++...
T Consensus 60 ~~~w~~~f~~---------------~~~~~i~isa~~~~~~~~~~~~~~~~l~~~ 99 (273)
T d1puja_ 60 TQQWKEHFEN---------------QGIRSLSINSVNGQGLNQIVPASKEILQEK 99 (273)
T ss_dssp HHHHHHHHHT---------------TTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------CCCCCCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999984---------------698651221125777532310333222211
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=6.9e-06 Score=56.43 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=44.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 9997999990899987899999983964-3555575036520367113320000111013434567979999199984
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe 868 (1324)
.+...|+|+|.+|+|||||+++|++... ..+..+|+|.++-.... .+.+.|+||||..
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-------------------~~~~~l~DTPGi~ 168 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-------------------GKELELLDTPGIL 168 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-------------------TTTEEEEECCCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEC-------------------CCCEEEECCCCCC
T ss_conf 7752789986675443555425426615887895322455348987-------------------9975995389744
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=1.4e-05 Score=54.21 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCEEEE----------------EEEEEECCCCCCCHHHHC---CCCC
Q ss_conf 9979999908999878999999839643555-5750365----------------203671133200001110---1343
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ----------------IGATYFPAENIRERTREL---KANA 852 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~----------------iga~~~~~e~i~~~~~~i---~~~~ 852 (1324)
++.+|+++|..|+||||.+-+|-..-...+. .+-||.+ ++..++...........+ ....
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 89 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 89 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999977990699960133420467888776432764103677776899878878999
Q ss_pred CCCCCCEEEEECCCCCCHHHH-H---HHC--------CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 456797999919998411456-6---402--------6766501786233468867789999998704993799840134
Q 000735 853 TLKVPGLLVIDTPGHESFTNL-R---SRG--------SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1324)
Q Consensus 853 ~~~~~~i~iIDTPGHe~F~~l-r---~rg--------~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD 920 (1324)
......+.||||||...+... + ... ...++-.+||+++..|... ....+......+ +-=++++|+|
T Consensus 90 ~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lI~TKlD 167 (213)
T d1vmaa2 90 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNG-LVQAKIFKEAVN-VTGIILTKLD 167 (213)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHH-HHHHHHHHHHSC-CCEEEEECGG
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-HHHHHHHCCCCC-CCEEEEECCC
T ss_conf 87699989982455330168888998888766420256665025786212348433-556565401227-8658984246
Q ss_pred CC
Q ss_conf 43
Q 000735 921 RL 922 (1324)
Q Consensus 921 ~~ 922 (1324)
-.
T Consensus 168 e~ 169 (213)
T d1vmaa2 168 GT 169 (213)
T ss_dssp GC
T ss_pred CC
T ss_conf 78
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=2.8e-05 Score=51.90 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEE----------------EEEEEECCCCCCCHHHHCCC---C
Q ss_conf 999799999089998789999998396435555-750365----------------20367113320000111013---4
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ----------------IGATYFPAENIRERTRELKA---N 851 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~----------------iga~~~~~e~i~~~~~~i~~---~ 851 (1324)
-++-+|+++|..|+||||.+-+|-......+.. +-||.+ ++..++...........+.. .
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99979999899999989999999999997799479982321366612045554343388621135687799999999999
Q ss_pred CCCCCCCEEEEECCCCCCHHH-HHH------HC-----CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 345679799991999841145-664------02-----676650178623346886778999999870499379984013
Q 000735 852 ATLKVPGLLVIDTPGHESFTN-LRS------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~-lr~------rg-----~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKi 919 (1324)
.......+.||||||.-.+.. ++. +. ...++-.+||+|++.|.... ...+......+ +-=++++|+
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~-~~~~~~~~~~~-~~~lIlTKl 164 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEAVG-LTGITLTKL 164 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHH-HHHHHHHHHSC-CCEEEEECC
T ss_pred HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHH-HHHHHHHHCCC-CCEEEEEEC
T ss_conf 9876998899656887632077899999999998530466860012200123576337-78764421017-864899612
Q ss_pred CCC
Q ss_conf 443
Q 000735 920 DRL 922 (1324)
Q Consensus 920 D~~ 922 (1324)
|-.
T Consensus 165 De~ 167 (211)
T d2qy9a2 165 DGT 167 (211)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 788
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=97.95 E-value=2.5e-05 Score=52.31 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=72.0
Q ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---
Q ss_conf 14545116999999808615999999810652898898805689605776530389887200102210000000122---
Q 000735 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa--- 1089 (1324)
...+|++.|.++|.+.|.|++++|.|.+|+|+.||.+.+++.. |. ...++|+++++|+..+..|
T Consensus 5 ~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~------------p~-~~~~~V~sI~~~~~~~~~a~aG 71 (100)
T d2c78a1 5 VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA------------PE-TRKTVVTGVEMHRKTLQEGIAG 71 (100)
T ss_dssp CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSS------------SS-CEEEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEECCEEECCCEEEEEEEC------------CC-CCEEEEEEEEECCCCCCEEECC
T ss_conf 8999899999999729967899999963579789871787606------------89-8189999999879640589389
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 46056015653234798439929986
Q 000735 1090 QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
..+.+.+.|++......+++++.+..
T Consensus 72 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 97 (100)
T d2c78a1 72 DNVGVLLRGVSREEVERGQVLAKPGS 97 (100)
T ss_dssp CEEEEEESSCCTTTCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 81899981777887358689977998
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=97.92 E-value=2.2e-05 Score=52.65 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---
Q ss_conf 14545116999999808615999999810652898898805689605776530389887200102210000000122---
Q 000735 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa--- 1089 (1324)
...||+++|..+|.+.|.|++++|.+.+|+|+.||.+.+++.... ...+|+++++|++.+..|
T Consensus 4 ~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~--------------~~~~V~si~~~~~~~~~a~aG 69 (98)
T d1d2ea1 4 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKN--------------IRTVVTGIEMFHKSLDRAEAG 69 (98)
T ss_dssp TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEE--------------EEEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCEEEEEEECCCEEEECCCCCC--------------EEEEEEEEEEECCEECCCCCC
T ss_conf 898789899878983892788763040036838999997357877--------------057999999916386207887
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 46056015653234798439929986
Q 000735 1090 QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
..+.+.+.|++......+++++.+..
T Consensus 70 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 95 (98)
T d1d2ea1 70 DNLGALVRGLKREDLRRGLVMAKPGS 95 (98)
T ss_dssp CEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 89999985898998567019957998
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.91 E-value=4.3e-05 Score=50.55 Aligned_cols=86 Identities=27% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCC---CC
Q ss_conf 454511699999980861599999981065289889880568960577653038988720010221000000012---24
Q 000735 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQ 1090 (1324)
Q Consensus 1014 ~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~a---a~ 1090 (1324)
..||++.|.++|.+.|.|++++|.|..|+|+.||.+++++++ ...+|++++.|+..+.. +.
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~ 66 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG----------------KVGEVRSIETHHTKMDKAEPGD 66 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTT----------------EEEEEEEEEETTEEESEECTTC
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC----------------CEEEEEEEEECCCCCCEEECCC
T ss_conf 868898999999729964378899714212489999998089----------------6479999885697457892898
Q ss_pred CEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 6056015653234798439929986
Q 000735 1091 GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1091 gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
.+.+.+.+++......+++++.++.
T Consensus 67 ~v~l~l~~i~~~~i~rG~vl~~~~~ 91 (95)
T d1jnya1 67 NIGFNVRGVEKKDIKRGDVVGHPNN 91 (95)
T ss_dssp EEEEEEESSCGGGCCTTCEEECTTS
T ss_pred CEEEEEECCCHHHCCCCCEEECCCC
T ss_conf 6999997685874289799988995
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=7.1e-05 Score=48.91 Aligned_cols=129 Identities=19% Similarity=0.112 Sum_probs=65.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------CCCCCCCCEEEEEEE---EEECCCCCCCHHHHCCC--C-----------
Q ss_conf 9799999089998789999998396------435555750365203---67113320000111013--4-----------
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGA---TYFPAENIRERTRELKA--N----------- 851 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~------v~~geagGITq~iga---~~~~~e~i~~~~~~i~~--~----------- 851 (1324)
-|++.|.|-.|+||||||.+|+... +-.++.|.+..+-.. .......+..-+.-+.. .
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~ 82 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 82 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHH
T ss_conf 78899864888999999999985678983799973664112233430256652488438840000003677778899999
Q ss_pred --CCCCCCCEEEEECCCCCCHHHHHHH--------CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf --3456797999919998411456640--------267665017862334688677899999987049937998401344
Q 000735 852 --ATLKVPGLLVIDTPGHESFTNLRSR--------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 852 --~~~~~~~i~iIDTPGHe~F~~lr~r--------g~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~ 921 (1324)
.....+...||-|.|-......... .....+.+|.|||+..+........+ ...+....=+|++||+|+
T Consensus 83 ~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~-~~~Qi~~AD~ivlNK~Dl 161 (222)
T d1nija1 83 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRILLTKTDV 161 (222)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHH-HHHHHHTCSEEEEECTTT
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCC
T ss_conf 8604677653678622421046899998852014442111340213335544444334678-999998688302446455
Q ss_pred CC
Q ss_conf 35
Q 000735 922 LY 923 (1324)
Q Consensus 922 ~~ 923 (1324)
..
T Consensus 162 ~~ 163 (222)
T d1nija1 162 AG 163 (222)
T ss_dssp CS
T ss_pred CC
T ss_conf 33
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.80 E-value=1.4e-05 Score=54.25 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-----------CCCEEE------EEEEEEECCCCCCCHHHHCC---CC
Q ss_conf 99979999908999878999999839643555-----------575036------52036711332000011101---34
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQ------QIGATYFPAENIRERTRELK---AN 851 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----------agGITq------~iga~~~~~e~i~~~~~~i~---~~ 851 (1324)
.++-+|+++|..|+||||.+-+|-..-...+. .+++-| .++..++...........+. ..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 83 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA 83 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99779999899999889999999999997799079998136665402667640545682389616774278899998999
Q ss_pred CCCCCCCEEEEECCCCCCHHHH----H---HH-----CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3456797999919998411456----6---40-----2676650178623346886778999999870499379984013
Q 000735 852 ATLKVPGLLVIDTPGHESFTNL----R---SR-----GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1324)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~l----r---~r-----g~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKi 919 (1324)
.......+.||||||...+... + .+ -...++-.+||++++.|... ...........++. =++++|+
T Consensus 84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~-~lI~TKl 161 (207)
T d1okkd2 84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEAVGLT-GVIVTKL 161 (207)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHHHCCS-EEEEECT
T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCC-EEEEECC
T ss_conf 998799999717522231127788887777777653256787359999620047167-89999750213886-4898336
Q ss_pred CCC
Q ss_conf 443
Q 000735 920 DRL 922 (1324)
Q Consensus 920 D~~ 922 (1324)
|-.
T Consensus 162 Det 164 (207)
T d1okkd2 162 DGT 164 (207)
T ss_dssp TSS
T ss_pred CCC
T ss_conf 888
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=7.7e-05 Score=48.68 Aligned_cols=123 Identities=25% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCCCCCEEEEECCCC-CCCHHHH-HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 676650178623346-8867789-99999870499379984013443576547881289999987599999998989999
Q 000735 878 SGLCDIAILVVDIMH-GLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1324)
Q Consensus 878 ~s~aDiaILVVDa~~-Gv~~QT~-E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I 955 (1324)
....|.+++|+++.. .+...-+ .+|-.+...++|.||++||+|++. .+. +..+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~-------~~~------------------~~~~ 62 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD-------EDD------------------LRKV 62 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC-------HHH------------------HHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-------HHH------------------HHHH
T ss_conf 566888999986789999989999999999986997799996766678-------799------------------9999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHCCCCC-CEEEEEE
Q ss_conf 9999981783133311247898403994787668990158999999977----------8687542014545-1169999
Q 000735 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ----------KTMVEKLTFRNEL-QCTVLEV 1024 (1324)
Q Consensus 956 ~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~----------~~l~e~l~~~~~~-~~~VlEv 1024 (1324)
...+..+ ...++++.+|+.++.|++.|..+|...+. ..+...|.....+ .+.|.+
T Consensus 63 ~~~~~~~-------------~~~~~v~~vSa~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~- 128 (225)
T d1u0la2 63 RELEEIY-------------SGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE- 128 (225)
T ss_dssp HHHHHHH-------------TTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred HHHHCCC-------------CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC-
T ss_conf 9754034-------------66136888415441557669999569808997889877888877305355501068420-
Q ss_pred EEECCCEEEEEEEEE
Q ss_conf 998086159999998
Q 000735 1025 KVIEGHGTTIDVVLV 1039 (1324)
Q Consensus 1025 k~i~G~G~vi~~iV~ 1039 (1324)
+.-+|..||....+.
T Consensus 129 ~~~rGrHTTt~~~l~ 143 (225)
T d1u0la2 129 KLQRGRHTTTTAQLL 143 (225)
T ss_dssp -------CCCSCCEE
T ss_pred CCCCCCCCCCCEEEE
T ss_conf 048987511331478
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.54 E-value=0.00015 Score=46.47 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEE----------------EEEEEECCCCCCCHHHH---CCCCCCC
Q ss_conf 799999089998789999998396435555-750365----------------20367113320000111---0134345
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ----------------IGATYFPAENIRERTRE---LKANATL 854 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~----------------iga~~~~~e~i~~~~~~---i~~~~~~ 854 (1324)
-+|+++|..|+||||.+-+|-..-...+.. +-||.+ ++..+............ ......+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 90 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 68999899999889999999999997799279995443464088889999986288631112442036788889888763
Q ss_pred CCCCEEEEECCCCCCHHH-HHH-----HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 679799991999841145-664-----02676650178623346886778999999870499379984013443
Q 000735 855 KVPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1324)
Q Consensus 855 ~~~~i~iIDTPGHe~F~~-lr~-----rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~ 922 (1324)
....+.||||||...+.. ++. .....++..+||++++.|..... .........++ -=++++|+|-.
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~~~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VARAFDEKVGV-TGLVLTKLDGD 162 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HHHHHHHHTCC-CEEEEECGGGC
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH-HHHHHHHHCCC-CEEEEEECCCC
T ss_conf 36764033454420000366889999986318736999843455616899-99999864799-70588603765
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.49 E-value=1.3e-05 Score=54.46 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---
Q ss_conf 14545116999999808615999999810652898898805689605776530389887200102210000000122---
Q 000735 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa--- 1089 (1324)
...+|+++|..+|.+.|.|++++|.|.+|+++.||.+.++|++ ...+|+++++|++.+..|
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG 66 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAKAG 66 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC----------------CCEEECCBCGGGSCBCCCCSS
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEEECCC----------------CCEEEEEEEECCCEEEEECCC
T ss_conf 8987899999999828957998769810658169769972358----------------706777666858142480899
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 4605601565323479843992998
Q 000735 1090 QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~~~v~~~~ 1114 (1324)
..+.+.+.|++......+++++.++
T Consensus 67 d~v~l~L~gi~~~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 67 DRVGMAIQGVDAKQIYRGCILTSKD 91 (92)
T ss_dssp CCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred CEEEEEECCCCHHHCCCCCEEECCC
T ss_conf 8977998088889848869996899
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=5.6e-05 Score=49.66 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCC-CCEEEEECCCCCC
Q ss_conf 99979999908999878999999839643-555575036520367113320000111013434567-9799991999841
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES 869 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~-~~i~iIDTPGHe~ 869 (1324)
++..+.+++|+.|+|||||+++|.....+ .++ |+...+.--..+. . ...+.. .+-.||||||...
T Consensus 93 l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~---vs~~~~rGrHTTt---------~-~~l~~l~~gg~iiDTPG~r~ 159 (225)
T d1u0la2 93 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE---VSEKLQRGRHTTT---------T-AQLLKFDFGGYVVDTPGFAN 159 (225)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCC---------S-CCEEECTTSCEEESSCSSTT
T ss_pred HCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCC---CCCCCCCCCCCCC---------C-EEEEEECCCCEEEECCCCCC
T ss_conf 569808997889877888877305355501068---4200489875113---------3-14789789917996876554
Q ss_pred HH
Q ss_conf 14
Q 000735 870 FT 871 (1324)
Q Consensus 870 F~ 871 (1324)
|.
T Consensus 160 ~~ 161 (225)
T d1u0la2 160 LE 161 (225)
T ss_dssp CC
T ss_pred CC
T ss_conf 55
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.41 E-value=0.0012 Score=39.92 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=50.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCC
Q ss_conf 7979999199984114566402676650178623346886778999999870499379-984013443
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1324)
Q Consensus 856 ~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiI-VviNKiD~~ 922 (1324)
.+.+.|||||+.... .....+..+|.+|+|+..+..-..++...+.++...++|++ |++|+.++.
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~ 176 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CCCEEEECCCCCCCC--CCHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 289899804332111--100122222103434321000011036777777531023443210135653
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.36 E-value=0.00046 Score=42.91 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCCCCEEEEEEEEECCCEE--------EEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCC
Q ss_conf 14545116999999808615--------9999998106528988988056896057765303898872001022100000
Q 000735 1013 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~--------vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~k 1084 (1324)
...++++.|..+|.+.+.|+ +++|.|.+|+|+.||.+.+.|+.. . .....+. +-....+|+++++|++
T Consensus 5 ~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~-~-~~~~~~~--~~~~~~~V~sI~~~~~ 80 (121)
T d1kk1a1 5 PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVP-Y-EEHGRIK--YEPITTEIVSLQAGGQ 80 (121)
T ss_dssp TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEE-E-EETTEEE--EEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEECCCEEEECCCCC-C-CCCCCEE--CEEEEEEEEEEEECCC
T ss_conf 8999688999899844899762247622778546278784099899878972-0-1145011--1020058989997897
Q ss_pred CCCCC---CCEEEECC---CCCCCCCCCCEEEECCCC
Q ss_conf 00122---46056015---653234798439929986
Q 000735 1085 QIKAA---QGIKITAQ---GLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1085 ev~aa---~gvki~~~---gL~~a~aG~~~~v~~~~~ 1115 (1324)
.+..| +.+.+.+. ++......++++++.++.
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~ 117 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred CCCEEECCCEEEEEECCCCCCCHHHHCCEEEEECCCC
T ss_conf 7398968996999962467823347332547888998
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.30 E-value=0.00095 Score=40.57 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCC-CEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---
Q ss_conf 4545-116999999808615999999810652898898805689605776530389887200102210000000122---
Q 000735 1014 RNEL-QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1089 (1324)
Q Consensus 1014 ~~~~-~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa--- 1089 (1324)
..|+ +++|..+|.+.| |++++|.|..|+|+.||.+.+.+ ...+|++++.|++.+..|
T Consensus 6 ~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p------------------~~~~VksIq~~~~~v~~a~~G 66 (91)
T d1xe1a_ 6 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPS------------------GIGGIVRIERNREKVEFAIAG 66 (91)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSS------------------CEEEEEEEEETTEEESEEETT
T ss_pred CCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCCEEEECC------------------CCEEEEEEEECCEEHHHHHHC
T ss_conf 79853736887999899-67999998028868999999899------------------618999998804582032012
Q ss_pred CCEEEECCCCCCCCCCCCEEEE
Q ss_conf 4605601565323479843992
Q 000735 1090 QGIKITAQGLEHAIAGTGLYVV 1111 (1324)
Q Consensus 1090 ~gvki~~~gL~~a~aG~~~~v~ 1111 (1324)
..+.+.+.+ +.....++.++.
T Consensus 67 ~~v~l~L~~-~~~di~rGdvL~ 87 (91)
T d1xe1a_ 67 DRIGISIEG-KIGKVKKGDVLE 87 (91)
T ss_dssp CEEEEEEES-CCCCCCTTCEEE
T ss_pred CEEEEEECC-CCCCCCCCCEEE
T ss_conf 346899868-847768878998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.00058 Score=42.16 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=70.0
Q ss_pred CCCCCCEEEEECCCC-CCCHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 676650178623346-88677899-9999870499379984013443576547881289999987599999998989999
Q 000735 878 SGLCDIAILVVDIMH-GLEPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1324)
Q Consensus 878 ~s~aDiaILVVDa~~-Gv~~QT~E-~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I 955 (1324)
....|.+++|+++.+ .+....++ +|-++...+++.||++||+|++. ..+.... +..+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~------~~~~~~~---------------~~~~ 66 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE------DQDTEDT---------------IQAY 66 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC------CHHHHHH---------------HHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------CHHHHHH---------------HHHH
T ss_conf 565688999987889999989999999999986997799995601136------4888889---------------9999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHCCCCCC-EEEEEE
Q ss_conf 999998178313331124789840399478766899015899999997----------786875420145451-169999
Q 000735 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1024 (1324)
Q Consensus 956 ~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~----------~~~l~e~l~~~~~~~-~~VlEv 1024 (1324)
.......| ++++.+|+.++.|+..|..+|.... -..+...|.....+. +.|.+
T Consensus 67 ~~~y~~~g---------------~~v~~~Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~- 130 (231)
T d1t9ha2 67 AEDYRNIG---------------YDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE- 130 (231)
T ss_dssp HHHHHHHT---------------CCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HHHHHHCC---------------CCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC-
T ss_conf 99976445---------------55046624871679999986435649998778734878987515176764035553-
Q ss_pred EEECCCEEEEEEEEE
Q ss_conf 998086159999998
Q 000735 1025 KVIEGHGTTIDVVLV 1039 (1324)
Q Consensus 1025 k~i~G~G~vi~~iV~ 1039 (1324)
..-.|..||....+.
T Consensus 131 ~~~rGrHTTt~~~l~ 145 (231)
T d1t9ha2 131 HLGRGKHTTRHVELI 145 (231)
T ss_dssp --------CCCCCEE
T ss_pred CCCCCCEEEEEEEEE
T ss_conf 358971244347888
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.16 E-value=7.6e-05 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 999799999089998789999998396
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
++.-..+++|+.|+|||||+++|+...
T Consensus 95 l~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 95 FQDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HCCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 435649998778734878987515176
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.06 E-value=0.00098 Score=40.47 Aligned_cols=84 Identities=13% Similarity=0.289 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEE-CCCCCC---C
Q ss_conf 145451169999998086159999998106528988988056896057765303898872001022100-000001---2
Q 000735 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL-HHKQIK---A 1088 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~-~~kev~---a 1088 (1324)
...||+++|.++| +|.|++++|.|.+|+|+.||.+++.+++ ...+|++++. ++..+. +
T Consensus 6 ~~~PlR~pV~d~~--kg~G~vv~G~v~sG~i~~gd~v~i~P~~----------------~~~~Vk~I~~~~~~~v~~a~a 67 (95)
T d1r5ba1 6 VNAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPIN----------------QTLEVTAIYDEADEEISSSIC 67 (95)
T ss_dssp HTSCCEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETTT----------------EEEEEEEEECTTCCEESEEET
T ss_pred CCCCEEEEEEEEE--CCCCEEEEEEEEECEEECCCEEEEECCC----------------CEEEEEEEEEECCCCCCCCCC
T ss_conf 9999898998898--1998799999936769679999994179----------------889999999974666567289
Q ss_pred CCCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 246056015653234798439929986
Q 000735 1089 AQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1089 a~gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
+..+.+.+.|.. ...-.+.+++.++.
T Consensus 68 Gd~V~l~l~~~~-~di~rG~vl~~~~~ 93 (95)
T d1r5ba1 68 GDQVRLRVRGDD-SDVQTGYVLTSTKN 93 (95)
T ss_dssp TCEEEEEEESCC-TTCCTTCEEECSSS
T ss_pred CCEEEEEECCCC-CCCCCCCEEECCCC
T ss_conf 987999982840-06699779975799
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.03 E-value=0.0015 Score=39.12 Aligned_cols=99 Identities=17% Similarity=0.044 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEEEEECCCEE--------EEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCC
Q ss_conf 14545116999999808615--------9999998106528988988056896057765303898872001022100000
Q 000735 1013 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~--------vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~k 1084 (1324)
...+++++|..+|.+.+.|+ ++++.|.+|+|+.||.|.+.++....- .... ..-....+|+++++|+.
T Consensus 3 ~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~--~~~~--~~~~~~t~V~sI~~~~~ 78 (118)
T d1s0ua1 3 PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTE--GNKT--FWKPLTTKIVSLAAGNT 78 (118)
T ss_dssp TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECC--TTCC--EEEEEEEECCEEEETTE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEECCEEEECCCCCCCC--CCEE--EEEEEEEEEEEEEECCC
T ss_conf 8989578998677115899864455551777555364786388899877873012--6603--00121079989997896
Q ss_pred CCCCC---CCEEEECC---CCCCCCCCCCEEEECCCC
Q ss_conf 00122---46056015---653234798439929986
Q 000735 1085 QIKAA---QGIKITAQ---GLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1085 ev~aa---~gvki~~~---gL~~a~aG~~~~v~~~~~ 1115 (1324)
.+..| ..+.|.+. ++..-..-.+++++.+..
T Consensus 79 ~v~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg~ 115 (118)
T d1s0ua1 79 ILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 115 (118)
T ss_dssp EESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred CCCEEECCCEEEEEECCCCCCCHHHHEEEEEEECCCC
T ss_conf 6378828997999964678945789100147867999
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=96.82 E-value=0.0071 Score=34.10 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=61.7
Q ss_pred HCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC-CCC
Q ss_conf 0145451169999998086159999998106528988988056896057765303898872001022100000001-224
Q 000735 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQ 1090 (1324)
Q Consensus 1012 ~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~-aa~ 1090 (1324)
+...||.+.|+.+.+...+|.+..++|++|+|+.|+.|..+..+. .-+|..|+...+... .++. +..
T Consensus 22 d~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~--~~rv~~l~~~~g~~~----------~~v~~~~a 89 (121)
T d2bv3a1 22 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR--KERVARLLRMHANHR----------EEVEELKA 89 (121)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTE--EEEECEEEEECSSCE----------EEESEEET
T ss_pred CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCC--EEEEEEEEEEECCCC----------CEEEEECC
T ss_conf 999887899974330678886775121125568999999814997--799724355203663----------38208604
Q ss_pred CEEEECCCCCCCCCCCCEEEEC
Q ss_conf 6056015653234798439929
Q 000735 1091 GIKITAQGLEHAIAGTGLYVVG 1112 (1324)
Q Consensus 1091 gvki~~~gL~~a~aG~~~~v~~ 1112 (1324)
|..+++.||..+..|+.|.-..
T Consensus 90 GdI~~i~gl~~~~~GDTl~~~~ 111 (121)
T d2bv3a1 90 GDLGAVVGLKETITGDTLVGED 111 (121)
T ss_dssp TCEEEEESCSSCCTTCEEEETT
T ss_pred CCCEEEECCCCCEECCEEECCC
T ss_conf 5436786658860277774699
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.0044 Score=35.62 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=38.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCC-CCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 999990899987899999983964--3555-5750365203671133200001110134345679799991999841
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGTNV--QEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v--~~ge-agGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~ 869 (1324)
+|+|+|...+|||+||+.|.++.. ..+. ....|..|..+..|.... ....+.|+||.|..+
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~-------------~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKK-------------PGHILVLLDTEGLGD 97 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSS-------------TTCEEEEEEECCBCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-------------CCCEEEEEECCCCCC
T ss_conf 9998899999799999998099878764787777777658998541578-------------874699982454345
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=96.32 E-value=0.004 Score=35.91 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=56.6
Q ss_pred CCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---CC
Q ss_conf 545116999999808615999999810652898898805689605776530389887200102210000000122---46
Q 000735 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1324)
Q Consensus 1015 ~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa---~g 1091 (1324)
.+|+++|-.|+-..+.+..+.|.|.+|+|+.||.+++++++ ...+|+++++|++.+..| ..
T Consensus 5 ~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg----------------~~~~Vk~I~~~~~~~~~a~~G~~ 68 (92)
T d1zunb1 5 TDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG----------------KSSRVKSIVTFEGELEQAGPGQA 68 (92)
T ss_dssp SSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTC----------------CEEEEEEEEETTEEESEECTTCE
T ss_pred CCEEEEEEEEECCCCCCCEEEEEECCCEEECCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 77488679998159980589999860479669999988999----------------52887677985745688959999
Q ss_pred EEEECCCCCCCCCCCCEEEECCC
Q ss_conf 05601565323479843992998
Q 000735 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1092 vki~~~gL~~a~aG~~~~v~~~~ 1114 (1324)
+.+.+.+ .....++.+++.++
T Consensus 69 v~l~L~~--~~di~RGdvl~~~~ 89 (92)
T d1zunb1 69 VTLTMED--EIDISRGDLLVHAD 89 (92)
T ss_dssp EEEEESS--CCCCCTTCEEEETT
T ss_pred EEEEECC--CCCCCCCCEEECCC
T ss_conf 8999768--11449988996589
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.20 E-value=0.0077 Score=33.86 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEEEEECCCEE--------EEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCC
Q ss_conf 14545116999999808615--------9999998106528988988056896057765303898872001022100000
Q 000735 1013 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1324)
Q Consensus 1013 ~~~~~~~~VlEvk~i~G~G~--------vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~k 1084 (1324)
+..++.++|..+|.+.+.|+ +++|.|.+|+|+.||.|.+.|.... .+..... .. ....+|+++++|++
T Consensus 3 ~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~--~~~~~~~-~~-~~~t~V~sI~~~~~ 78 (114)
T d2qn6a1 3 LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRV--EKQGKVS-YE-PIFTKISSIRFGDE 78 (114)
T ss_dssp TTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEE--EETTEEE-EE-EEEEEEEEEEETTE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEECCCCCC--CCCCEEE-EE-ECCEEEEEEEECCC
T ss_conf 88996188862111468999720265449998973561772878998678742--3376164-10-02169999998992
Q ss_pred CCCCC---CCEEEECC
Q ss_conf 00122---46056015
Q 000735 1085 QIKAA---QGIKITAQ 1097 (1324)
Q Consensus 1085 ev~aa---~gvki~~~ 1097 (1324)
.+..| +.+.|.+.
T Consensus 79 ~v~~A~aG~~V~i~l~ 94 (114)
T d2qn6a1 79 EFKEAKPGGLVAIGTY 94 (114)
T ss_dssp EESEECSSSCEEEEES
T ss_pred CCCEEECCCEEEEEEC
T ss_conf 6178957998999963
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.15 E-value=0.014 Score=31.83 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=58.9
Q ss_pred HCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC-CCC
Q ss_conf 0145451169999998086159999998106528988988056896057765303898872001022100000001-224
Q 000735 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQ 1090 (1324)
Q Consensus 1012 ~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~-aa~ 1090 (1324)
....+|.+.|+.+.+...+|.+..++|++|+|+.||.+..++.. .++..++...... ..++. +..
T Consensus 5 ~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~----~~~~~~~~~~~~~----------~~~v~~~~a 70 (103)
T d2dy1a1 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ----VRLPHLYVPMGKD----------LLEVEEAEA 70 (103)
T ss_dssp HCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSC----EEESSEEEEETTE----------EEEESCEET
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECC----CCCCEEEEEECCC----------CEECCEECC
T ss_conf 79999589999977258998799999921565799999975423----2211023440476----------203677158
Q ss_pred CEEEECCCCCCCCCCCCEEEE
Q ss_conf 605601565323479843992
Q 000735 1091 GIKITAQGLEHAIAGTGLYVV 1111 (1324)
Q Consensus 1091 gvki~~~gL~~a~aG~~~~v~ 1111 (1324)
|..+++.|+..+..|+.+.-.
T Consensus 71 GdI~~v~g~~~~~iGDTl~~~ 91 (103)
T d2dy1a1 71 GFVLGVPKAEGLHRGMVLWQG 91 (103)
T ss_dssp TCEEEESSCTTCCTTCEEESS
T ss_pred CCEEEEECCCCCCCCCEECCC
T ss_conf 979999587777657888179
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.88 E-value=0.02 Score=30.84 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCC
Q ss_conf 7979999199984114566402676650178623346886778999999870499379-984013443
Q 000735 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1324)
Q Consensus 856 ~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiI-VviNKiD~~ 922 (1324)
.+.+.|||||++.... ....+..+|.+++|+.....-.......+..+...+++++ +++|+++..
T Consensus 109 ~~D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 109 STDILLLDAPAGLERS--AVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174 (232)
T ss_dssp TCSEEEEECCSSSSHH--HHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred CCCEEEECCCCCCCCH--HHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 3643530332222202--57776542303220222211024566666654310111222223334434
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0064 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
|+|+|+|..|+|||||+.+|...
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999918999899999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.48 E-value=0.007 Score=34.14 Aligned_cols=112 Identities=11% Similarity=-0.011 Sum_probs=58.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHHH-
Q ss_conf 9799999089998789999998396435555750365203671133200001110134345679799991999841145-
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~- 872 (1324)
+.+|+++|.+++|||||..+|....-.. +.. ...+..+..+...... ......+.++......
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~----~~~----~~~~~~D~~r~~~~~~--------~~~~~~~~~~~~~~~~~ 65 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFI----GVP----TREFNVGQYRRDMVKT--------YKSFEFFLPDNEEGLKI 65 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT----TCC----EEEEEHHHHHHHHHCS--------CCCGGGGCTTCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC----CCC----CEEECCCCEEHHHCCC--------CCCCCCCCCCCCCCHHH
T ss_conf 9899998999999999999999999746----999----7397453011323045--------43321122222000146
Q ss_pred ----------HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf ----------6640267665017862334688677899999987049937998401344
Q 000735 873 ----------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1324)
Q Consensus 873 ----------lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~ 921 (1324)
.....+....+.++|+|+..+...+-.....++...+.+++++.+.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 66 RKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCH
T ss_conf 87888999999999998618988986067764899998999987549807998850367
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.011 Score=32.64 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=49.1
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|+ +..+.|+--+|..|+|+.|..+.+ +.+ ...+|.||+.+++++++|..|+.|||.|
T Consensus 9 ~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l 70 (94)
T d1f60a1 9 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG---VTTEVKSVEMHHEQLEQGVPGDNVGFNV 70 (94)
T ss_dssp EEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT---EEEEEEEEEETTEECSCBCTTCEEEEEE
T ss_pred EEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC---CEEEEEEEEECCCCCCEECCCCEEEEEE
T ss_conf 8899808822899875611468789899988678---3279999999584768764898599998
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.22 E-value=0.017 Score=31.35 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCCEEEEEEEEECCCEEEEEE-EEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCC---CCC
Q ss_conf 451169999998086159999-9981065289889880568960577653038988720010221000000012---246
Q 000735 1016 ELQCTVLEVKVIEGHGTTIDV-VLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQG 1091 (1324)
Q Consensus 1016 ~~~~~VlEvk~i~G~G~vi~~-iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~a---a~g 1091 (1324)
|....|+.-+.+.+.++.+.+ .|..|+|+.|+.+++.+.+ ...+|++++.+++.+.. ++.
T Consensus 4 P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~----------------~~g~VksIq~~~~~v~~A~~G~~ 67 (128)
T d1g7sa2 4 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGE----------------TVGTVESMQDKGENLKSASRGQK 67 (128)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSC----------------EEEEEEEEEETTEEESEEETTCC
T ss_pred EEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 17999768767527998599999935263089979988999----------------35899999998821117828998
Q ss_pred EEEECCCCC---CCCCCCCEEEECCCCCHHHH
Q ss_conf 056015653---23479843992998618999
Q 000735 1092 IKITAQGLE---HAIAGTGLYVVGPDDDLEDV 1120 (1324)
Q Consensus 1092 vki~~~gL~---~a~aG~~~~v~~~~~~~~~~ 1120 (1324)
+.|.+.|.. ...-|+.||.--+...+..+
T Consensus 68 Vai~I~g~~~gr~i~~gD~L~s~i~~~~i~~l 99 (128)
T d1g7sa2 68 VAMAIKDAVYGKTIHEGDTLYVDIPENHYHIL 99 (128)
T ss_dssp EEEEEETCCBTTTBCTTCEEEECCCHHHHHTT
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99997685337789988899996998999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.021 Score=30.64 Aligned_cols=92 Identities=10% Similarity=0.030 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 79997999990899987899999983964355557503652036711332000011101343456797999919998411
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F 870 (1324)
..++.+|.++|.+++|||||...|.... +...+..+.++.. ..+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~-------------~~~~i~~D~~~~~-----------------------~~~ 54 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-------------GYVHVNRDTLGSW-----------------------QRC 54 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG-------------TCEEEEHHHHCSH-----------------------HHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-------------CCEEECHHHHHHH-----------------------HHH
T ss_conf 9999899998999998999999999765-------------9789760777788-----------------------899
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 45664026766501786233468867789999998704993799840134
Q 000735 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1324)
Q Consensus 871 ~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD 920 (1324)
....... +.....+|||.+.....+-...+.+++..+++++++.-.++
T Consensus 55 ~~~~~~~--l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~ 102 (172)
T d1yj5a2 55 VSSCQAA--LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 102 (172)
T ss_dssp HHHHHHH--HHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHH--HHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999--97799955517679999999999999855888799994899
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.014 Score=31.84 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|+ +..+.|+--+|..|+|+.|..+++ +.+. ....+|.||+.++++++.|..|+.|+|.|
T Consensus 11 d~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~-~~~~~vksi~~~~~~~~~a~aG~~v~l~L 74 (92)
T d1efca1 11 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE-TQKSTCTGVEMFRKLLDEGRAGENVGVLL 74 (92)
T ss_dssp CEEEECTTSCEEEEEECCBSEEETTCEEEEESSSS-CEEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred EEEEECCCEEEEEEEEECCCEECCCCEEEEECCCC-CCEEEEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 97998298579889786367681899999972799-81899999999884705537888899998
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.06 E-value=0.019 Score=30.94 Aligned_cols=59 Identities=31% Similarity=0.351 Sum_probs=49.8
Q ss_pred CCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 631268998599899841156219968823992999886500001375424323798119959
Q 000735 1262 NCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~~k~~~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|+-+.+.|+-..|..|+|++|..|.+..+ ..+|.||+.+++++++|..|+-|+|.|
T Consensus 15 d~vf~i~GgtVvtGtV~sG~i~~Gd~v~~~p~----~~~VksIq~~~~~v~~a~~G~~v~l~L 73 (91)
T d1xe1a_ 15 EEVVNIMGKDVIIGTVESGMIGVGFKVKGPSG----IGGIVRIERNREKVEFAIAGDRIGISI 73 (91)
T ss_dssp EEEEEETTEEEEEEEEEEEEEETTCEEECSSC----EEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred EEEEEECCCEEEEEEEEECCCCCCCEEEECCC----CEEEEEEEECCEEHHHHHHCCEEEEEE
T ss_conf 87999899679999980288689999998996----189999988045820320123468998
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=94.84 E-value=0.025 Score=30.08 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
..+|+ +..++|+-=.|..|+|+.|..+.+ +... -...+|.||+.+++++++|..|+-|||.|
T Consensus 13 d~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~-~~~~~V~si~~~~~~~~~a~aG~~v~l~l 76 (98)
T d1d2ea1 13 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK-NIRTVVTGIEMFHKSLDRAEAGDNLGALV 76 (98)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTE-EEEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred EEEEEECCCEEEEECCEEEEEEECCCEEEECCCCC-CEEEEEEEEEEECCEECCCCCCCEEEEEE
T ss_conf 87898389278876304003683899999735787-70579999999163862078878999998
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.095 Score=25.76 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=58.6
Q ss_pred HCCCCCCEEEEEEEEECCCEEE-EEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCC----CC
Q ss_conf 0145451169999998086159-999998106528988988056896057765303898872001022100000----00
Q 000735 1012 TFRNELQCTVLEVKVIEGHGTT-IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK----QI 1086 (1324)
Q Consensus 1012 ~~~~~~~~~VlEvk~i~G~G~v-i~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~k----ev 1086 (1324)
++..||.+.|....+....|.. ..++|++|+|+.|+.+.+++..+.. ..+.-+...+|..+|.++. +|
T Consensus 30 d~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~-------~~~~~~~~~~i~~i~~~~g~~~~~v 102 (138)
T d1n0ua1 30 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVP-------GKKDDLFIKAIQRVVLMMGRFVEPI 102 (138)
T ss_dssp CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCS-------SSCTTEEEEECCEEEEEETTEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEECCCCCC-------CCCCCCCEEEEEEEEEEECCCEEEE
T ss_conf 999998999986124898888999998884558179999984688622-------4455420004415677715760267
Q ss_pred CCC-CCEEEECCCCCCCCC-CCCE
Q ss_conf 122-460560156532347-9843
Q 000735 1087 KAA-QGIKITAQGLEHAIA-GTGL 1108 (1324)
Q Consensus 1087 ~aa-~gvki~~~gL~~a~a-G~~~ 1108 (1324)
..+ .|..+++.||+..+. +.++
T Consensus 103 ~~a~AGdIvai~Gl~~~i~k~~Tl 126 (138)
T d1n0ua1 103 DDCPAGNIIGLVGIDQFLLKTGTL 126 (138)
T ss_dssp SEEETTCEEEEESCTTTCCSSEEE
T ss_pred EEEECCCEEEEECCCCCEECCCEE
T ss_conf 588327578973344524502363
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.52 E-value=0.033 Score=29.19 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=46.5
Q ss_pred CCEEEEEEEEECEEECCCCEEE-CCCCE------E---EEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 9859989984115621996882-39929------9---9886500001375424323798119959
Q 000735 1269 DPIVLGVDVVEGIAKVGTPICI-PQRDF------I---DIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1269 ~~~IaG~~V~~G~lk~g~~i~v-~~~~~------i---~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
.+.|++=.|..|+|++|..|.+ +.+.. . ...+|.||+.++.++++|..|+-|||.+
T Consensus 28 ~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l 93 (118)
T d1s0ua1 28 KGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGT 93 (118)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEEC
T ss_pred CCCEEEEEECCCEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEECCCEEEEEE
T ss_conf 551777555364786388899877873012660300121079989997896637882899799996
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.52 E-value=0.05 Score=27.81 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=45.3
Q ss_pred CEEEEEEEEECEEECCCCEEE-CCCCEE---------EEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 859989984115621996882-399299---------9886500001375424323798119959
Q 000735 1270 PIVLGVDVVEGIAKVGTPICI-PQRDFI---------DIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1270 ~~IaG~~V~~G~lk~g~~i~v-~~~~~i---------~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.|+.=.|..|+|++|..|.+ +.+... ...+|.||+.++++|++|..|+-|||.+
T Consensus 31 G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~~~v~~A~~G~~Vgv~l 95 (121)
T d1kk1a1 31 GGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGT 95 (121)
T ss_dssp CCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEE
T ss_pred CEEEEEEECCCEEECCCEEEECCCCCCCCCCCEECEEEEEEEEEEEECCCCCCEEECCCEEEEEE
T ss_conf 22778546278784099899878972011450111020058989997897739896899699996
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.024 Score=30.15 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEEC-CCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-8998599899841156219968823-992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v~-~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|. ...+.|+--+|..|+|+.|..+.+. ...--...+|.||+.+++.+.+|..|+-|+|.|
T Consensus 14 d~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~~~~~~a~aG~~v~l~l 78 (100)
T d2c78a1 14 EDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 78 (100)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred EEEEECCCCEEEEEEEEECCEEECCCEEEEEEECCCCCEEEEEEEEECCCCCCEEECCCEEEEEE
T ss_conf 99997299678999999635797898717876068981899999998796405893898189998
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.11 E-value=0.033 Score=29.19 Aligned_cols=60 Identities=30% Similarity=0.456 Sum_probs=50.0
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|+ +..+.|+-=+|..|+|+.|..+.+ +.+ ...+|.||+.++.+++++..|+.|++.|
T Consensus 11 ~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l 72 (95)
T d1jnya1 11 QDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG---KVGEVRSIETHHTKMDKAEPGDNIGFNV 72 (95)
T ss_dssp EEEEEETTTEEEEEEECCBSCEETTCEEEEETTT---EEEEEEEEEETTEEESEECTTCEEEEEE
T ss_pred EEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC---CEEEEEEEEECCCCCCEEECCCCEEEEE
T ss_conf 9999729964378899714212489999998089---6479999885697457892898699999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=93.92 E-value=0.13 Score=24.73 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999908999878999999839
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.|+|+|..|+|||||+..|.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 8999989993899999999814
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.79 E-value=0.083 Score=26.20 Aligned_cols=55 Identities=27% Similarity=0.335 Sum_probs=45.2
Q ss_pred CEEEEEEEEECEEECCCCEEE-CCCC------EE---EEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 859989984115621996882-3992------99---9886500001375424323798119959
Q 000735 1270 PIVLGVDVVEGIAKVGTPICI-PQRD------FI---DIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1270 ~~IaG~~V~~G~lk~g~~i~v-~~~~------~i---~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.|++=.|..|+|++|..|.+ +.+. +. ...+|.||+.++.++++|..|+-|||.+
T Consensus 29 G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l 93 (114)
T d2qn6a1 29 GGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGT 93 (114)
T ss_dssp CCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEE
T ss_pred CEEEEEEECCCCEEECCEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECCCEEEEEE
T ss_conf 44999897356177287899867874233761641002169999998992617895799899996
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.59 E-value=0.06 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999990899987899999983
Q 000735 796 ICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+++|+|..++|||||+.+|..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999980999989999999999
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=93.41 E-value=0.16 Score=24.11 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999089998789999998
Q 000735 797 CCIMGHVDTGKTKLLDCIR 815 (1324)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~ 815 (1324)
|+|.|-.|+||||+.-.|-
T Consensus 4 Iai~gKGGvGKTT~a~nLA 22 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998998577999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.18 Score=23.70 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
|+ |.|.|.+|+|||||+..|...
T Consensus 2 k~--v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RH--VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CC--EEEESCCSSCHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 69--999889997199999999999
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.80 E-value=0.094 Score=25.77 Aligned_cols=59 Identities=12% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCCCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHC-CCCCCCCCCCCCCEEEEC
Q ss_conf 63126899859989984115621996882-3992999886500001-375424323798119959
Q 000735 1262 NCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN-NHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~-~k~~v~~~~kG~e~~i~i 1324 (1324)
..+|+ ..+.|+-.+|..|+|+.|..|.+ +.+. ..+|.+|.. +++.|++|..|+-|+|.|
T Consensus 15 ~d~~k-g~G~vv~G~v~sG~i~~gd~v~i~P~~~---~~~Vk~I~~~~~~~v~~a~aGd~V~l~l 75 (95)
T d1r5ba1 15 ASKYK-DLGTILEGKIEAGSIKKNSNVLVMPINQ---TLEVTAIYDEADEEISSSICGDQVRLRV 75 (95)
T ss_dssp CEEEE-SSSEEEEEECCBSEEETTEEEEEETTTE---EEEEEEEECTTCCEESEEETTCEEEEEE
T ss_pred EEEEC-CCCEEEEEEEEECEEECCCEEEEECCCC---EEEEEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 88981-9987999999367696799999941798---8999999997466656728998799998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.54 E-value=0.058 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999990899987899999983
Q 000735 796 ICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+|+|.|.+++|||||...|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.09 E-value=0.12 Score=25.00 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 631268-99859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~~-k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
++|++. .+..++.=+|..|+|++|..|.+ +.+. ..+|.||+.+++++++|..|+-|+|.|
T Consensus 12 Q~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~---~~~Vk~I~~~~~~~~~a~~G~~v~l~L 73 (92)
T d1zunb1 12 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK---SSRVKSIVTFEGELEQAGPGQAVTLTM 73 (92)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCC---EEEEEEEEETTEEESEECTTCEEEEEE
T ss_pred EEEECCCCCCCEEEEEECCCEEECCCEEEECCCCC---EEEEEEEEECCCCCCEECCCCEEEEEE
T ss_conf 99981599805899998604796699999889995---288767798574568895999989997
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.78 E-value=0.036 Score=28.86 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=49.3
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 63126-899859989984115621996882-3992999886500001375424323798119959
Q 000735 1262 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1262 ~~vf~-~k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.+|. +..+.|+-=+|..|+|+.|..|.+ +.+. ..+|.||+.+++++++|..|+-|||.|
T Consensus 12 ~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aGd~v~l~L 73 (92)
T d1wb1a1 12 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM---STKVRSIQYFKESVMEAKAGDRVGMAI 73 (92)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCC---CEEECCBCGGGSCBCCCCSSCCCCEEC
T ss_pred EEEEEECCCEEEEEEEEEECEEECCCEEEEECCCC---CEEEEEEEECCCEEEEECCCCEEEEEE
T ss_conf 99998289579987698106581697699723587---067776668581424808998977998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.09 E-value=0.29 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99979999908999878999999839
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
...+.+++.|++|+||||++..|...
T Consensus 50 ~~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 50 GVFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88744999879999888999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.80 E-value=0.11 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.++++|+|+|.+++||||+...|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8994899989999988999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=90.18 E-value=0.14 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79997999990899987899999983
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.+++.+|+|+|++|+||||+...|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99988899982899988999999999
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.03 E-value=0.36 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 999799999089998789999998
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIR 815 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~ 815 (1324)
+|. |+|-|-.|+||||+.-.|-
T Consensus 2 Mr~--IaisgKGGVGKTT~a~NLA 23 (289)
T d2afhe1 2 MRQ--CAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp CEE--EEEEECTTSSHHHHHHHHH
T ss_pred CCE--EEEECCCCCCHHHHHHHHH
T ss_conf 628--9998999877999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.62 E-value=0.11 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 34799979999908999878999999839
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
....|+.+|+|-|..++|||||+..|...
T Consensus 4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67998619998899998889999999987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.54 E-value=0.14 Score=24.47 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.=+|+|+|+.|+|||||+..|.+-
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999989998299999999579
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.43 E-value=0.13 Score=24.81 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+-=+++|+|+.|+|||||+..|.+-
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCCCHHHHHCCCC
T ss_conf 9979999889999821655750688
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.41 E-value=0.11 Score=25.32 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
-|+|+|+|.+|+||||+...|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 89798989999998999999999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.15 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.=+++|+|+.|+|||||+..|.+-
T Consensus 26 Gei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 26 GEFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989998299999999658
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.15 Score=24.23 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
=+|+|+|+.|+|||||+..|.+-
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999999899999999735
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.2 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
|.+|+|.|.+++|||||...|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989997879999999999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=88.09 E-value=0.21 Score=23.27 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
=+++|+|+.|+|||||+..|.+-
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999999998099999999648
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.07 E-value=0.2 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999089998789999998396
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
-+++|+|+.|+|||||+..|.+-.
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999799980999999997399
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=87.93 E-value=0.18 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
=+|+|+|+.|+|||||+..|.+-
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999799999999996
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.85 E-value=0.21 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.=+++|+|+.++|||||+..|.+-
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999998299999999758
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.81 E-value=0.19 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.=+|+|+|+.++|||||+..|.+-
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999998599999998621
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.76 E-value=0.15 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+.+-.|+|+|.+++|||||..+|..
T Consensus 5 ~~~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 5 FFAKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp GTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 6632899989999989999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.72 E-value=0.2 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
||+|+|+|.+++||||+...|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 93999979999998999999999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.72 E-value=0.19 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.=+++|+|+.++|||||+..|.+-
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999998499999998614
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.68 E-value=0.5 Score=20.38 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999990899987899999983
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+.|.+.|.|++|+|||||+..|..
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 997699978999748799999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=87.40 E-value=0.52 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
++ |.|.|.+++|||||++.|+..
T Consensus 167 ~n--ili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KN--VIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CC--EEEEESTTSSHHHHHHHHGGG
T ss_pred CC--EEEEEECCCCCHHHHHHHHHH
T ss_conf 88--899940356625789998653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=87.37 E-value=0.21 Score=23.22 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999089998789999998396
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
+-=+++|+|+-++|||||+..|.+-.
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99799999999985999999996788
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.36 E-value=0.16 Score=24.09 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
=+++|+|+-|+|||||+..|.+-
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999999997199999999662
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=0.23 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999990899987899999983
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
..|+|+|+|.+++||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 972899989999998999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.35 E-value=0.28 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 479997999990899987899999983
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
..-++.+|+|.|.+++|||||...|..
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 789988999968999987689999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.35 E-value=0.28 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999990899987899999983
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.+.+|+|.|.+++|||||...|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 988999789887899999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.33 E-value=0.45 Score=20.77 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99990899987899999983
Q 000735 797 CCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~ 816 (1324)
|.|+|.+|+|||+|+.+|..
T Consensus 31 vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988998529999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=0.25 Score=22.70 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+|||+|.|++++||||+-..|..
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899779998898999999999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=87.19 E-value=0.22 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.=+++|+|+.|+|||||+..|.+-
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 9979999899989888999987588
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.86 E-value=0.12 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.+.|||+|.|..++|||||...|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9888999989997809999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.79 E-value=0.27 Score=22.40 Aligned_cols=23 Identities=35% Similarity=0.448 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
|+ |+|+|..++|||||+.+|+..
T Consensus 2 rp--Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 2 RP--IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CC--EEEECCTTSSHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 76--999899999989999999974
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=86.74 E-value=0.23 Score=22.84 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.=+++|+|+.|+|||||+..|.+-
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9979999989998299999999747
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.64 E-value=0.5 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.|.+.|.|++|+||||++..|..
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 78599889999988999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.37 E-value=0.36 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=22.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 479997999990899987899999983
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
..-++.+|+|.|..|+|||||...|..
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 899988998379987889999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.27 E-value=0.23 Score=22.91 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
|++|+|+|.+|+||||+...|..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 72999988999998999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.24 E-value=0.6 Score=19.83 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.|.+.+.|++|+|||||+..|...
T Consensus 35 ~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 35 LPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 985999889987755899999998
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=86.21 E-value=0.17 Score=23.87 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999089998789999998396
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
.=+++|+|+.|+|||||+..|.+-.
T Consensus 26 Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999899982999999996476
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=0.31 Score=21.91 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99979999908999878999999839
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+|.| |+|+|+.++|||||+.+|+..
T Consensus 2 m~k~-ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 2 MRKT-LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf 9771-999998999999999999970
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=86.18 E-value=0.19 Score=23.57 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
=+++|+|+-|+|||||+..|.+-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999989998099999999488
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.13 E-value=0.31 Score=21.97 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
|-+|+|.|.+|+||||++..|..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899989999898999999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.01 E-value=0.27 Score=22.35 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
-=+++|+|+-++|||||+..|.+-
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999999998499999999779
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=85.98 E-value=0.27 Score=22.37 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999089998789999998396
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
=+++|+|.-|+|||||+..|.+-.
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999999999999996698
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.94 E-value=0.32 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
|+ |+|+|..++|||||+..|+..
T Consensus 1 rp--Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 1 RP--VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp CC--EEEECCTTSSHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 91--999999999999999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.33 E-value=0.37 Score=21.38 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999990899987899999983
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
++++|.|+|.+++||||+...|..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 782899989999987999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.10 E-value=0.39 Score=21.21 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.-++.|.|.+++|||+|+-.|...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9849999918999999999999999
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.91 E-value=0.69 Score=19.39 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 999799999089998789999998
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIR 815 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~ 815 (1324)
.+.-+|.+.|-.|+||||+.-.|-
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 797899997999887899999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.52 E-value=0.22 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.|.++|.|++|+|||||+..|..
T Consensus 33 ~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 33 LPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88599989999984999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=84.40 E-value=0.41 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999990899987899999983
Q 000735 795 PICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.+|+|.|.+++||||+...|..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0899989999998999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.39 E-value=0.45 Score=20.74 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
-|...|+|+|.+++||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7621699988999987999999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=84.17 E-value=0.19 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.=+|+|+|+.++|||||+..|.+-
T Consensus 44 Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 44 GETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 989999889998099999999712
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=83.91 E-value=0.53 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+++.+|+|.|++++||||+...|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9965999789998798999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=83.76 E-value=0.57 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.498 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.+.+|.|.|.+++||||+...|...
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9859999899999989999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.44 E-value=0.47 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999908999878999999839
Q 000735 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+|+|+|..++|||||+..|+..
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999999999999845
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.38 E-value=0.79 Score=18.94 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.++.++|.|.+|+|||+++..|...
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 8881688898999899999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.23 E-value=0.19 Score=23.46 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999990899987899999983
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
.|.+.+.|++|+||||+...|..
T Consensus 36 ~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 36 MPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHH
T ss_conf 87499988999870546999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=83.23 E-value=0.43 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999908999878999999839
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
+.+|+|.|.+++||||+.+.|...
T Consensus 3 p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 989999898877899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.21 E-value=0.35 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9799999089998789999998
Q 000735 794 SPICCIMGHVDTGKTKLLDCIR 815 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~ 815 (1324)
.|.|+++|..|+||||+-..|.
T Consensus 1 ~p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 1 APKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CCSEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 9948998899998899999999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.98 E-value=0.21 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999089998789999998396
Q 000735 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1324)
-=+++|+|+.|+|||||+..|.+-.
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999899980999999997586
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=82.62 E-value=0.59 Score=19.86 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9997999990899987899999983
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
..+.+++|+|.+++||||+...|..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9871899989999898999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=0.53 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999908999878999999839
Q 000735 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
.+|+|+|+.++|||||+++|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 09999999999999999999863
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=81.82 E-value=0.7 Score=19.31 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999990899987899999983
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+.+.|+|+|.+++||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 963899989999988999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=81.62 E-value=0.91 Score=18.48 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCC-CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 999-7999990899987899999983
Q 000735 792 LRS-PICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 792 ~R~-piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+|+ =+++|.|.+++|||+|+..|..
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 78980899994799979999999997
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=80.94 E-value=0.38 Score=21.30 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9799999089998789999998
Q 000735 794 SPICCIMGHVDTGKTKLLDCIR 815 (1324)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~ 815 (1324)
+.+|.+.|-.|+||||+.-.|-
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 8599997998674999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.86 E-value=0.71 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999908999878999999839
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1324)
..-+|+|.|.+++||||+...|...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9859999889999889999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.76 E-value=0.97 Score=18.27 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999990899987899999983
Q 000735 795 PICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~ 816 (1324)
|.+.+.|++|+|||||...|.+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 7389889799878889999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.11 E-value=0.68 Score=19.40 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999990899987899999983
Q 000735 796 ICCIMGHVDTGKTKLLDCIRG 816 (1324)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~ 816 (1324)
+|+|+|.+++||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899988999998999999999
|