Citrus Sinensis ID: 000864

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------125

MKQVVNLDDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLSLQDSSSQASCSQQEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKSHPSDSAWTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNITQERIPFLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLKSRPKSTTDQKRKEIKVRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGEGDASNNEANDNEAAEAGDNSSEDSKDDENASEGFYLLWLMTPWVPQILNPMAKMNMKMKMLLSS

cccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccEEEEEcccEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHcHHHHHHHHHHHcccc

ccEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccHEEEEccccEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccccccHHHccHcccHHHHHHHHHHHHHHccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHcHHHHHHHHHHccccHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHccccccEEccccHHHHHHHccccccccccccccccccccccccccccEEEEEEccccHHHHHcHHHHHHHHHHHHHcc

mkqvvnlddaqmlDLLPKCFDLLresekggdyVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGmkivdlqdlpTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAvkqdpslgqeVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDykfskdcmwlpndskdefLQSVKVVEKAVLRSVnesnygrehvvpsIVQFGFILLEsveegslkehcqsngllgiEKLGIQILKTLFEVHDMARSEIVEQCKFRvlslkpeqSMSVIRLIGNlvqnypypmleHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEkqsktdgslslqdsssqascsqqeiprsthggLFQELSALLQRCLYQQAKVKEVMYQGLVKLVlvdpsaggpifdflLPHFlrffredsdvqLGVNLCIKvengrafidepLDCLLYCVSLILVLQshgkshpsdsawtcfgfslsqdneegknssaESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDAlekdsgvsrqsnarKVNVrasahgtpatipdscnsnitqeripflaTSSIFKLLQTVLQLYHTecsnstatsqkhsqsssaETLKRCSKIISFVLETTfhqiksspvvgkedplktliygdmkvlgpPLLKLIFLLksrpksttdqkRKEIKVRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEyaldyesdessrlddlnvrSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNelpckwknshgtwaegfcksnsitnaNVVKSVVKLAIclssppndLFVAQSLAQELLKVtgsgssdslevselyplinhstsTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTqkgihvnhdedhvsglgfeenLYSRTEALVKVLSSFVLmslkdpqaEHFLRLATRLYKHLAQMSklriapkgckqllpsleFQRLVELTCKQLTVPLYNFVAEMQrgqlenasskGILNKIkrenkcipdliFQIEDYEKYLIQLSKVSKINLLrhakrstsrdfkildtvgegdasnneandneaaeagdnssedskddenasEGFYLLWLmtpwvpqilnPMAKMNMKMKMLLSS

mkqvvnlddaqmldLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLasrgfnkreVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSvnesnygrehvvpSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRvlslkpeqsmSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLSLQDSSSQASCSQQEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKSHPSDSAWTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDalekdsgvsrqsnaRKVNVrasahgtpatipdscnsnITQERIPFLATSSIFKLLQTVLQLYHTECSNstatsqkhsqsssaETLKRCSKIISFVLETtfhqiksspvvgkedPLKTLIYGDMKVLGPPLLKLIFLlksrpksttdqkrkeikvrkdvEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALdyesdessrlddlnVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQlenasskgilnkikRENKCIPDLIFQIEDYEKYLIQLSKVSkinllrhakrstsrdfkildtvgegdasnneandneaaeagdnssedskDDENASEGFYLLWLMTPWVPQILNPMAKMNMKMKMLLSS

MKQVVNLDDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGslslqdsssqascsqqEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKSHPSDSAWTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNITQERIPFLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVlgppllklifllkSRPKSTTDQKRKEIKVRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFiekllkplisellllsFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGegdasnneandneaaeagdnssedskddenaseGFYLLWLMTPWVPQILNPmakmnmkmkmLLSS

*******DDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIM*********************************GLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHG******SAWTCFGFS*****************TALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDAL**********************************NITQERIPFLATSSIFKLLQTVLQLYHTEC*******************KRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLK***************VRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYE*******DDLNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVT*******LEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLEN**SKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHA************************************************GFYLLWLMTPWVPQILNPM*************

********DAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFG*************VEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESV***************GIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMA********************************GLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHG*************FSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQE*******EEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLH*********************************************FLATSSIFKLLQTVLQLYHTECSNSTAT**********ETLKRCSKIISFVLETTFHQI**************LIYGDMKVLGPPLLKLIFLLKSRPKSTT**********KDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVS******************LNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGS*S***L**SELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLV****************LGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFV************************KCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILD*************************************FYLLWLMTPWVPQILNPMAKMNMKMKMLLS*

MKQVVNLDDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEK*************************RSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQS********SAWTCFGFSLSQ************FSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNITQERIPFLATSSIFKLLQTVLQLYHTEC*******************KRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLKSRP************VRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGEGDASNNE**********************ASEGFYLLWLMTPWVPQILNPMAKMNMKMKMLLSS

MKQVVNLDDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQ******************SQQEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHG********WTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDS******************************NITQERIPFLATSSIFKLLQTVLQLYHTECSNSTAT********SAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLKSRP**************KDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQ****VNHD*DHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGEG*****************************SEGFYLLWLMTPWVPQILNPMAKMNMKMKMLL**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKQVVNLDDAQMLDLLPKCFDLLRESEKGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLSLQDSSSQASCSQQEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKSHPSDSAWTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEEKRKCCSLILLGIIEVVxxxxxxxxxxxxxxxxxxxxxxxxxYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNITQERIPFLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLKSRPKSTTDQKRKEIKVRKDVEEHLCLALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGEGDASNNEANDNEAAEAGDNSSEDSKDDENASEGFYLLWLMTPWVPQILNPMAKMNMKMKMLLSS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1247	2.2.26 [Sep-21-2011]
Q8K368		1330	Fanconi anemia group I pr	yes	no	0.380	0.356	0.284	5e-48
Q9NVI1		1328	Fanconi anemia group I pr	yes	no	0.373	0.350	0.291	2e-46

>sp\|Q8K368\|FANCI_MOUSE Fanconi anemia group I protein homolog OS=Mus musculus GN=Fanci PE=1 SV=2	Back alignment and function desciption

 Score =  194 bits (492), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 264/537 (49%), Gaps = 63/537 (11%)

Query: 29  GGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLP 88
           G +Y   + D L    W +  +++L S+ +++        +  + KV      ++LQ++P
Sbjct: 153 GEEYKRQLIDTLCSVRWPQRYMIQLTSVFKDVCL-TPEEMNLVVAKVLTMFSKLNLQEIP 211

Query: 89  TLVYQLLVLASRGFNKREVIEGIVVFFG---------------SKMGSKVTSIVRQVEGT 133
            LVYQLLVL+S+G ++R V++GI+ FF                S++ +     +  VEGT
Sbjct: 212 PLVYQLLVLSSKG-SRRSVLDGIIAFFRELDKQHREEQSSDELSELITAPADELYHVEGT 270

Query: 134 VLLHVNFAVKQDPSLGQEVMGLVKLDL-----RAFNHFAVAVLLSVARIRKFSESAMGIL 188
           V+LH+ FA+K D  LG+E++  +K        +    F++A+LLS+ RI++F E    +L
Sbjct: 271 VILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLL 330

Query: 189 KTALLTAYRDYKFSKDCMWLPNDSKDEFLQSV----KVVEKAVLRSVNESNYGREHVVPS 244
           KT+++ +++D       + L   SK  FLQ++      V   +L  V  S +  +HV   
Sbjct: 331 KTSVVKSFKD-------LQLLQGSK--FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQG 381

Query: 245 IVQFGFILLES-----------VEEG-SLKEHCQSNGLLGIEKLGIQILKTLFEVHDMAR 292
           +++FGFIL++S           VE G SL +    +      KLG  IL   F++H+M R
Sbjct: 382 LIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHAC----KLGANILLETFKIHEMIR 437

Query: 293 SEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVAT 352
            EI+EQ   RV++         + L  +++   P  +L++ S++ E  DY TF+  +   
Sbjct: 438 QEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPL-ILQNCSKVTETFDYLTFLPLQTVQ 496

Query: 353 YLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLS 412
            L+ A+ PL+ IS  ++D  ILV+RKAMF  +   R +A    + L+   K  K  GSL 
Sbjct: 497 GLLKAVQPLLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLL---KNFKVLGSLP 553

Query: 413 LQDSSSQASCSQQEIP-RSTHGGLFQELSAL-----LQRCLYQQAKVKEVMYQGLVKLVL 466
               +     +Q  +   S +  +  E   L     L+R L QQA ++ ++Y G   ++ 
Sbjct: 554 SSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVLR 613

Query: 467 VDPSAGGPIFDFLLPHFLRFFREDSDV--QLGVNLCIKVENGRAFIDEPLDCLLYCV 521
            +      I   L     +F+  + D+   L +  C+  +  + F+ EPLD LL C+
Sbjct: 614 RNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGACVLTQGSQIFLQEPLDHLLSCI 670

Plays an essential roles in the repair of DNA double-strand breaks by homologous recombination and in the repair of interstrand DNA cross-links (ICLs) by promoting FANCD2 monoubiquitination by FANCL and participating to recruitment to DNA repair sites. Required for maintenance of chromosomal stability. Speficically binds branched DNA: binds both single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA). Participates in S phase and G2 phase checkpoint activation upon DNA damage.
Mus musculus (taxid: 10090)

>sp\|Q9NVI1\|FANCI_HUMAN Fanconi anemia group I protein OS=Homo sapiens GN=FANCI PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1247
296083346		1361	unnamed protein product [Vitis vinifera]	0.971	0.890	0.650	0.0
359477252		1427	PREDICTED: LOW QUALITY PROTEIN: Fanconi	0.971	0.849	0.632	0.0
147857575		1413	hypothetical protein VITISV_006993 [Viti	0.956	0.844	0.636	0.0
224110410		1406	predicted protein [Populus trichocarpa]	0.971	0.861	0.630	0.0
255551803		1357	conserved hypothetical protein [Ricinus	0.931	0.855	0.581	0.0
297792151		1450	hypothetical protein ARALYDRAFT_917877 [	0.966	0.831	0.561	0.0
186530632		1469	fanconi anemia group I protein [Arabidop	0.966	0.820	0.552	0.0
186530637		1470	fanconi anemia group I protein [Arabidop	0.966	0.819	0.551	0.0
10176944		1487	unnamed protein product [Arabidopsis tha	0.966	0.810	0.544	0.0
414866729		1350	TPA: hypothetical protein ZEAMMB73_97209	0.919	0.848	0.415	0.0

>gi\|296083346\|emb\|CBI22982.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1570 bits (4064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1232 (65%), Positives = 969/1232 (78%), Gaps = 20/1232 (1%)

Query: 3    QVVNLDDAQMLDLLPKCFDLLRESE---KGGDYVNLVFDRLLDCDWSKGLLLKLVSIVRE 59
            Q+VN DDAQ+LDLLP+C DL+R SE   +GGD+VN V D +L  DWSK LL+K+VS++RE
Sbjct: 85   QIVNQDDAQLLDLLPRCLDLIRNSEEIERGGDFVNSVVDHVLTSDWSKALLVKVVSLLRE 144

Query: 60   LGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKM 119
              + DK RC EFL KVF GMK VDLQDLP+LVYQLLVLAS+GF+KREVIEGIV+FFGSKM
Sbjct: 145  FSYLDKGRCREFLEKVFVGMKGVDLQDLPSLVYQLLVLASKGFSKREVIEGIVMFFGSKM 204

Query: 120  GSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRK 179
            GSK TSIVRQVEGTVLLHVNFAVKQDPSLGQEV+GLV+ DLR FN+F VA+L S+AR+R+
Sbjct: 205  GSKATSIVRQVEGTVLLHVNFAVKQDPSLGQEVLGLVRSDLRVFNNFTVAILFSLARVRR 264

Query: 180  FSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGRE 239
            FSES+MGILK AL+ AYRD+K ++DC WL ND K+ +LQ+VK+VEKAVLR+VN+SNYGRE
Sbjct: 265  FSESSMGILKAALIMAYRDFKSAEDCKWLSNDLKEGYLQTVKIVEKAVLRAVNDSNYGRE 324

Query: 240  HVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQC 299
            H+VPSIVQ GFILLES E+ + K    SNGL+G E+LGIQ+LK+LF+VHDMAR+EI+EQC
Sbjct: 325  HIVPSIVQLGFILLESAEDRNQKAFYNSNGLMGTEELGIQMLKSLFDVHDMARNEIIEQC 384

Query: 300  KFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALL 359
            KFR+LSLKPEQSM +IRL+G L+Q+ PYPMLEHVSRLKE LDYFTFMHGK+A   VTALL
Sbjct: 385  KFRILSLKPEQSMPIIRLLGYLIQSLPYPMLEHVSRLKEFLDYFTFMHGKIAICFVTALL 444

Query: 360  PLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGSLSLQDSSSQ 419
            PLI  SRDLQDYTILVVRKAMFRRED VR AA NAIIDL++AEKQSK  G  S QDSSSQ
Sbjct: 445  PLIKFSRDLQDYTILVVRKAMFRREDTVRIAAINAIIDLVLAEKQSKRGGPYSFQDSSSQ 504

Query: 420  ASCSQQ-EIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDF 478
            AS SQQ EIP S   GLFQELS LLQRCL QQAKVKE+MY GLVKLVLVDP   GP+ DF
Sbjct: 505  ASSSQQAEIPCSLGAGLFQELSGLLQRCLCQQAKVKEIMYHGLVKLVLVDPLTAGPVLDF 564

Query: 479  LLPHFLRFFRE-DSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKS-HPS 536
            LLPHFL F+RE D+D QLG++ C+K E+G+  I+EPLDCLL  +S IL+LQ  GK+  PS
Sbjct: 565  LLPHFLHFYREQDADAQLGISCCVKSESGKVCIEEPLDCLLSSISWILLLQPPGKTDRPS 624

Query: 537  DSAWTCFGFSLSQDNEEGKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEE 596
            DS+W CFGFSLSQ+NE GK  S+ESF++ALLKI++ LR    EDI G  Q+ VS +  +E
Sbjct: 625  DSSWACFGFSLSQENEAGKILSSESFTSALLKIRQCLRRGNMEDIFGQTQDTVSRTSEDE 684

Query: 597  KRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSN 656
            K +CC+LIL GI+EV+LNTIA E+EKA D  K  L KELI+++  +D L+K    SRQ N
Sbjct: 685  KSRCCALILSGIVEVLLNTIATEMEKATDIEKVDLLKELIDFVNHYDFLKKSRSTSRQRN 744

Query: 657  A-RKVNVRASAHGTPATIPDSCNSNITQERIPFLATSSIFKLLQTVLQLYHTECSNSTAT 715
              ++ N+R + H  P +  D  +  ++Q RIPFLATSSI++LLQT L LY+ + SN   T
Sbjct: 745  GIKRGNLRTAVHDIPDST-DLGHMTLSQARIPFLATSSIYQLLQTFLDLYNIDFSNGITT 803

Query: 716  SQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLK 775
            SQ  SQSSS +TL   SK+ISFVL  + HQIKS  V+GK+DPLKTLIYG++++LGPPLLK
Sbjct: 804  SQNCSQSSSGKTLVCTSKMISFVLNVSLHQIKSFTVLGKDDPLKTLIYGEIEMLGPPLLK 863

Query: 776  LIFLLKSRPKSTTDQKRKEIKVRKDVE---EHLCLALICLRDLITISLQNSQLTGLLEDL 832
            LI+LLKS PK   DQK+KE K RKDVE   EHL LAL+CL++LI I LQN   T LLEDL
Sbjct: 864  LIWLLKSEPKLEADQKKKEGKGRKDVEDRKEHLHLALVCLKELIKICLQNPHQTSLLEDL 923

Query: 833  LSVSKLEYAL--------DYESDESSRLDDLNVRSKELFIEKLLKPLISELLLLSFFREV 884
            +S+S +EY L        D E + +S  DD N++SK L I++ ++PL SELL LSF REV
Sbjct: 924  VSLSTVEYPLRNVADVGSDDECEIASGTDDQNIKSKVLLIKRCVRPLFSELLGLSFVREV 983

Query: 885  EILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFV 944
            EILCDI++MIGN+LPCKW+N HG WA   C ++ ITN+ V K++V LAICLSSPP+DL V
Sbjct: 984  EILCDIVMMIGNKLPCKWRNFHGAWAVRICNTSGITNSKVAKNLVDLAICLSSPPDDLIV 1043

Query: 945  AQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAIKKVK 1004
            AQ +A+ELLKV GS SS+ LE SE Y +INHST++ + S IL+  E V+ DMDWA  K+K
Sbjct: 1044 AQEMAKELLKVMGSESSNPLETSETYAIINHSTTSAVASSILEFIESVIVDMDWATAKLK 1103

Query: 1005 TFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFLRLAT 1064
            TFS VT +   ++ +  H   L  EE LYSR EALV+VLSSFVLM++KDPQAEH LRL T
Sbjct: 1104 TFSPVTLETASLDLNGGHAPALSLEETLYSRAEALVRVLSSFVLMNMKDPQAEHLLRLIT 1163

Query: 1065 RLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLENASS 1124
            R YKHLA+MSKLRIAPKGC+QLLP L+FQ+LVELTC+QLTVPLY+FVA MQR Q ENA S
Sbjct: 1164 RFYKHLARMSKLRIAPKGCRQLLPGLKFQKLVELTCRQLTVPLYSFVALMQRDQQENAKS 1223

Query: 1125 KGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDTVGEG 1184
            +G+L+KIKREN+CIPDLIFQIEDYEKYLIQLSK +K+NLLRHAKRSTSRDFKILD     
Sbjct: 1224 RGLLSKIKRENRCIPDLIFQIEDYEKYLIQLSKATKVNLLRHAKRSTSRDFKILDHPRTN 1283

Query: 1185 DASNNEANDNEAAEAGDNSSEDSKDDE-NASE 1215
                   N N +    + + ++ +D+E N SE
Sbjct: 1284 TGEEEPPNHNHSTAVQNETGQECEDNEGNGSE 1315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477252\|ref\|XP_003631953.1\| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group I protein-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147857575\|emb\|CAN81002.1\| hypothetical protein VITISV_006993 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224110410\|ref\|XP_002315511.1\| predicted protein [Populus trichocarpa] gi\|222864551\|gb\|EEF01682.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255551803\|ref\|XP_002516947.1\| conserved hypothetical protein [Ricinus communis] gi\|223544035\|gb\|EEF45561.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297792151\|ref\|XP_002863960.1\| hypothetical protein ARALYDRAFT_917877 [Arabidopsis lyrata subsp. lyrata] gi\|297309795\|gb\|EFH40219.1\| hypothetical protein ARALYDRAFT_917877 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|186530632\|ref\|NP_199722.2\| fanconi anemia group I protein [Arabidopsis thaliana] gi\|332008388\|gb\|AED95771.1\| fanconi anemia group I protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186530637\|ref\|NP_001119400.1\| fanconi anemia group I protein [Arabidopsis thaliana] gi\|332008389\|gb\|AED95772.1\| fanconi anemia group I protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|10176944\|dbj\|BAB10093.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|414866729\|tpg\|DAA45286.1\| TPA: hypothetical protein ZEAMMB73_972095 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1247
TAIR\|locus:2155169		1470	AT5G49110 [Arabidopsis thalian	0.920	0.780	0.532	0.0
UNIPROTKB\|H3BP78		1090	FANCI "Fanconi anemia group I	0.412	0.472	0.256	1.5e-59
UNIPROTKB\|E1BDI4		1327	FANCI "Uncharacterized protein	0.406	0.382	0.270	3.1e-58
UNIPROTKB\|Q9NVI1		1328	FANCI "Fanconi anemia group I	0.448	0.420	0.256	1.3e-57
UNIPROTKB\|F1SK25		1329	FANCI "Uncharacterized protein	0.410	0.385	0.263	2.2e-57
UNIPROTKB\|F1PF23		1322	FANCI "Uncharacterized protein	0.444	0.419	0.265	3.9e-56
MGI\|MGI:2384790		1330	Fanci "Fanconi anemia, complem	0.370	0.347	0.259	2.3e-55
ZFIN\|ZDB-GENE-030131-2905		1327	fanci "Fanconi anemia, complem	0.432	0.406	0.262	8.5e-54
UNIPROTKB\|F1P1Z1		1100	F1P1Z1 "Uncharacterized protei	0.380	0.430	0.268	6.3e-49
UNIPROTKB\|F8W7R3		1095	FANCI "Fanconi anemia group I	0.412	0.470	0.256	1.2e-42

TAIR\|locus:2155169 AT5G49110 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2972 (1051.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 630/1183 (53%), Positives = 812/1183 (68%)

Query:     3 QVVNLDDAQMLDLLPKCFDLLRESEKGG--DYVNLVFDRLLDCDWSKGLLLKLVSIVREL 60
             +V+ +D+AQ+ DLLP CFDLLR   K    D+VN   DR+L C+W+K LL K+VS+ +E 
Sbjct:   143 RVITVDEAQVFDLLPVCFDLLRREGKASEIDFVNSAIDRVLSCEWNKALLTKMVSLAKEF 202

Query:    61 GFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMG 120
              F DK R SE + KVF G+K++DLQDLP+LVYQLLVLAS+GF KREVI G+V +FGSK  
Sbjct:   203 SFLDKGRKSELVEKVFVGIKLIDLQDLPSLVYQLLVLASKGFCKREVIGGVVGYFGSKAE 262

Query:   121 SKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLDLRAFNHFAVAVLLSVARIRKF 180
             ++V S+VRQ+EGTVLLHVNFAVKQDPSLGQEV+ LVK DLRAFNHF VAVL SVAR+RKF
Sbjct:   263 TRVASVVRQIEGTVLLHVNFAVKQDPSLGQEVVALVKSDLRAFNHFTVAVLFSVARVRKF 322

Query:   181 SESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGREH 240
              ES++G+L+TALLTAY DY+ SKDC WLP + K+E     K+VEK++LR+V+E  YGREH
Sbjct:   323 GESSLGMLRTALLTAYNDYRLSKDCKWLPVELKEESFLHAKLVEKSLLRAVSECRYGREH 382

Query:   241 VVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCK 300
             VVPS++QFGF+LLESVEEG   E   S G+LGIEKL IQIL TLFEVHDM R+EI+EQCK
Sbjct:   383 VVPSVIQFGFMLLESVEEGRSNEFGDSKGVLGIEKLSIQILGTLFEVHDMTRNEIIEQCK 442

Query:   301 FRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLP 360
             FR+LSLK  +S  ++RL+G LVQ Y   MLE V  LKELLDYFTFM G ++ +LV+A++P
Sbjct:   443 FRILSLKCAKSKPIVRLLGYLVQRYSLIMLEFVHHLKELLDYFTFMEGHISCFLVSAVIP 502

Query:   361 LINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGXXXXXXXXXXX 420
             LI  SRDLQDYTILV+RKAMFRRED VR AAT  I DLI+AEK +K D            
Sbjct:   503 LIKFSRDLQDYTILVIRKAMFRREDTVRVAATKVITDLILAEKLAKRDSSFTFQDSASQA 562

Query:   421 XXXX-XEIPRSTHGGLFQELSALLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFL 479
                   E+     G LF EL+ LLQRCLYQQA+VKEV+Y GLVKLVL+DPS+GG + DFL
Sbjct:   563 SSSQQTEMSCIVRGNLFTELNGLLQRCLYQQARVKEVVYDGLVKLVLIDPSSGGHVLDFL 622

Query:   480 LPHFLRFFREDSDVQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKS-HPSDS 538
             +PHFLRFF +D+D QLG+  CI+VE  +  I+EPLD LL+CVS IL+LQ    S  PSD+
Sbjct:   623 MPHFLRFFGQDTDFQLGITSCIRVEGDKFTIEEPLDRLLFCVSWILLLQQQNSSDRPSDA 682

Query:   539 AWTCFGFSLSQDNEE--GKNSSAESFSTALLKIQKFLRNAKFEDILGLGQEEVSTSLAEE 596
             AW CFGFSLSQDNE+  G+N S E++S+AL+KI+ FL   K  DI+G  Q+ VS SL E+
Sbjct:   683 AWPCFGFSLSQDNEQQVGRNLSHEAYSSALVKIRSFLLGKKLGDIVGQSQDTVSASLEED 742

Query:   597 KRKCCSLILLGIIEVVLNTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSN 656
             KRK   LI+LGI++V+LN I  +LEK  +  KG++ KE+++ I L+++LEKD G S+QSN
Sbjct:   743 KRKSYCLIILGIVQVLLNYIIVDLEKQPEGKKGSVRKEIVDLIDLYESLEKDVGKSKQSN 802

Query:   657 ARKVNVRASAHGTPATIPDSCNSNITQER--IPFLATSSIFKLLQTVLQLYHTECSNSTA 714
               K  VR SA        D  N++I +ER  +PFLATSSI++L     +LY ++   + +
Sbjct:   803 VGK-RVRFSA----CNDTDLGNTSINEEREKVPFLATSSIYQLFLLSFKLYSSKSVGTQS 857

Query:   715 TSQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTLIYGDMKVXXXXXX 774
              SQ HS SS A+T K    I SF L      I SS  + +E+PLK L+ GDMKV      
Sbjct:   858 GSQDHSHSSPAKTEK---SIFSFTLHVCVGHINSSLCMKEENPLKPLVCGDMKVLGPPLL 914

Query:   775 XXXXXXXSRPKSTTDQKRKEIKVRKDVE---EHLCLALICLRDLITISLQNSQLTGLLED 831
                      P   T Q  KE K RKDV+   + L LAL+ L++L+ I    S LTGLLED
Sbjct:   915 KVVYLLKPEPPLATGQTNKEKKGRKDVDGRKQCLHLALLSLKELLNIYSSGSGLTGLLED 974

Query:   832 LLSVSKLEYALDYESDESSRLDDLNVRSKELFXX-----------XXXXXXXXXXXXXXF 880
             LL+V   E A   E  E+S+++D  ++S E+F                           F
Sbjct:   975 LLAVPASEDATLEECREASKIEDPLIKSIEIFMAKIMKPMITDFIAQNSNDVEEAKTIIF 1034

Query:   881 FREVEILCDIIVMIGNELPCKWKNSHGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPN 940
                V+ILCDI++ +GN LP K+K  HG+WA   C+S   +N  V KSV+KLAI  ++ P 
Sbjct:  1035 NCTVQILCDIMLKLGNNLPDKFKQRHGSWAHQICRSCETSNTTVAKSVLKLAISFTTSPG 1094

Query:   941 DLFVAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILSCILQLTEEVVSDMDWAI 1000
             DL +A  +AQEL  + G   SD+LEVSE Y +IN STS ++ SCILQ  +  + DMDWA 
Sbjct:  1095 DLCIAVEVAQELQNIMGLDKSDTLEVSESYMVINQSTSASVTSCILQSIDSAIVDMDWAT 1154

Query:  1001 KKVKTFSLVTQKGIHVNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLKDPQAEHFL 1060
             KK+K F +V+QK IH++ D +   G   EE LYS  E+ V++LSSFVLM+LK+ QA  FL
Sbjct:  1155 KKLKNFYVVSQKNIHLSDDTESTVGSVLEEALYSMAESTVRILSSFVLMNLKESQAAQFL 1214

Query:  1061 RLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLE 1120
             RLA R YK LAQ+ KLRIAPKGCKQ+LPSL+FQ+LVELTCK LTVPLY F++EMQ+ ++ 
Sbjct:  1215 RLAVRFYKQLAQIVKLRIAPKGCKQILPSLKFQKLVELTCKSLTVPLYPFLSEMQKVKVV 1274

Query:  1121 NASSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSK--VSKI 1161
              A    +  +I++       L+FQI++ ++ +   SK  ++KI
Sbjct:  1275 QAVITLMFLRIQKREVL---LLFQIQEQQESVSHNSKGIINKI 1314

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB\|H3BP78 FANCI "Fanconi anemia group I protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BDI4 FANCI "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NVI1 FANCI "Fanconi anemia group I protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SK25 FANCI "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PF23 FANCI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2384790 Fanci "Fanconi anemia, complementation group I" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2905 fanci "Fanconi anemia, complementation group I" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1Z1 F1P1Z1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F8W7R3 FANCI "Fanconi anemia group I protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_X000146	hypothetical protein (1406 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1247
cd11720		1202	cd11720, FANCI, Fanconi anemia I protein	0.0

>gnl\|CDD\|212594 cd11720, FANCI, Fanconi anemia I protein	Back alignment and domain information

 Score =  843 bits (2179), Expect = 0.0
 Identities = 375/1228 (30%), Positives = 575/1228 (46%), Gaps = 159/1228 (12%)

Query: 7    LDDAQMLDLLPKCFDLLRESEK---------GGDYVNLVFDRLLDCDWSKGLLLKLVSIV 57
              +    DLLP     L E ++         G +Y + + + +    W   +L  L S+ 
Sbjct: 80   NSNGSWKDLLPTILSALSEEKEILYEGGELTGAEYKSQIINSICSSKWQPNILTSLTSMF 139

Query: 58   RELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGS 117
            R+L    K   +  + K+   +K +DLQ+LP LVYQLLVL S+G +K  V+EG+  +F  
Sbjct: 140  RDL-SLSKEELNFVVEKLCRALKELDLQELPPLVYQLLVLCSKG-DKLLVLEGLQKYFDK 197

Query: 118  KMGSKVTSI------------------VRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLD 159
                ++ S                   VR+ EGTVLLH+NFA KQD  LG+E + L+K  
Sbjct: 198  LYYKRLLSDANSSSTEDDEIETSSPKEVREAEGTVLLHINFAAKQDHELGKEFLKLLKSV 257

Query: 160  LR----AFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDE 215
             R    A   F+++VLLS++RI +F E     LKTA++ ++++ +  ++  WL     + 
Sbjct: 258  QRVPEKALTPFSLSVLLSMSRINRFEEQVFDFLKTAIVRSFKEKELQQNSAWLR----EL 313

Query: 216  FLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESVEEGSLKEHCQSNGLLGIEK 275
             L  VK VEK +LR V  S  GR+HV P +V  GFILLES    +  E           +
Sbjct: 314  LLPQVKDVEKILLRVVKNSVSGRDHVTPGLVNLGFILLESYGPKASLESGSKTPAPKAWQ 373

Query: 276  LGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSR 335
            LGI+IL  +F+ H++ARSEI+EQ K R+++  P      I  +  LVQ+ P  MLEHVS+
Sbjct: 374  LGIKILLKIFKKHEIARSEILEQLKNRIVT-LPSPVSQYIDCLSYLVQSAPLLMLEHVSK 432

Query: 336  LKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAI 395
            + ELLDY TF+ G  A  L+ A+ PL+ ISR L+D  ILV+RKA+F RE   R  A    
Sbjct: 433  ITELLDYLTFIPGSSAMRLLKAIQPLLKISRSLRDSLILVLRKALFSRETETRQMAVTGF 492

Query: 396  IDLIMAEKQSKTDGSL--SLQDSSSQASCSQ--QEIPRSTHGGLFQELSALLQRCLYQQA 451
            + L+   K   + GS   S   SS+QAS     Q     ++  L  E+  LL+RCL QQA
Sbjct: 493  LLLLKNLKLLSSLGSSQSSSASSSTQASIDVHSQYSSSESNESLCLEILGLLRRCLTQQA 552

Query: 452  KVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDVQLGVNL--CIKVENGRAF 509
            +V+ ++Y+GL ++VL +P     + D LLPHF  FF ED DV L + L  C+  +     
Sbjct: 553  EVRLMLYEGLYRVVLRNPELAPHVLDLLLPHFKSFFEEDEDVLLPLKLESCVTTQGDDIV 612

Query: 510  IDEPLDCLLYCVSLILVLQSHGKS-HPSDSAWTCFGFSLSQDNEEGKNSSAESFSTALLK 568
            + EPL  L++C+   L+L     S  P  +A                          L  
Sbjct: 613  LQEPLGHLIFCIQHCLLLSKQNNSGRPDAAAALLEES------------------LMLES 654

Query: 569  IQKFLRNAKFEDILGLGQEEVST-SLAEEKRKCCSLILLGIIEVVLNTIANELEKAADAA 627
            I K +   + ED       + S  S   +K+   +L+LLGI EV++  I N   K +  A
Sbjct: 655  ICKRMIKVELEDFELDKSADFSVNSSVGQKKLLNALLLLGIYEVLIEYIFNIWNKVSKNA 714

Query: 628  KGALEKELIEYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNITQERIP 687
                 KE++    L+++L                                          
Sbjct: 715  ----CKEILGLFKLYESLLDL--------------------------------------- 731

Query: 688  FLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISFVLETTFHQIK 747
                  + KLL     L+ T    +T       Q+S    L+   + + ++L     +++
Sbjct: 732  ------VSKLLTL---LFDTSVQYATE-----DQTSL---LRSNREFMRYILSVCLQKLQ 774

Query: 748  SSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLK-SRPKSTTDQKRKEIKVRKDVEEHLC 806
            S       D         +      + K+++L K S+         K+I           
Sbjct: 775  SLKNTPDYDG--GQHSKRIFQNLCDITKVLYLRKISKLTELKKDFGKQI---------AL 823

Query: 807  LALICLRDLITISLQNSQLTGLLEDLLSVSKLEYALDYESDESSRLDDLNVRSKELFIEK 866
            LAL C  +++ + LQ       LED LSV  +E     +S    +L          FI  
Sbjct: 824  LALECFLEILNVVLQL--YPSKLEDFLSVIDVEDGGGEKSTIDEQL----HFQIRHFIRS 877

Query: 867  LLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKNS--HGTWAEGFCKSNSITNANV 924
            L+K L +E       +EV IL +I+ ++ ++LP     +    TW    CK N + +++V
Sbjct: 878  LMKLLSTEEEEDFVSKEVVILIEILSVLSDKLPPNSTQAKQMLTWLLKICKENELEDSSV 937

Query: 925  VKSVVKLAICLSSPPNDLF-VAQSLAQELLKVTGSGSSDSLEVSELYPLINHSTSTTILS 983
             K+V+ L + L     +   +   +AQEL  V G    D    S    +IN +T+ ++L+
Sbjct: 938  AKAVLTLLLSLHVRTQEYLELLDEVAQELCAVLGDIDEDEETESHKLKIINETTAESVLT 997

Query: 984  CILQLTEEVVSDMDWAIKKVKTFSLVTQKGIHVNH---DEDHVSGLGFEENLYSRTEALV 1040
             +L   ++V+ D+DW IK++K    V Q     +               E LY     L 
Sbjct: 998  LLLASLDKVLDDVDWLIKRLKAELNVDQLPGEDSEQSQGNLKSIERSICEQLYHIATVLT 1057

Query: 1041 KVLSSFVLMSLKDPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTC 1100
            +++++          A+  L+L  +LYK L+ ++K  IA      + PS +F++LVEL  
Sbjct: 1058 ELVNT---AIPPGSCADALLKLLIKLYKTLSNLTKHFIARSTKNPVFPSAKFEKLVELAG 1114

Query: 1101 KQLTVPLYNFVAEMQRGQLENAS--------SKGILNKIKRENKCIPDLIFQIEDYEKYL 1152
            KQLT  +YNF+  ++  Q E  S        SK   NKI RE K IP LI+ IE +EK+L
Sbjct: 1115 KQLTPNIYNFITYVEENQSEQDSKKKKKKAKSKVQRNKILRETKLIPKLIYAIEQFEKFL 1174

Query: 1153 IQLSKVSKINLLRHAKRSTSRDFKILDT 1180
            IQLSK +K+NL+R+ K ST+RDF+I D+
Sbjct: 1175 IQLSKKTKVNLMRYMKLSTTRDFRIKDS 1202

The Fanconi anemia ID complex consists of two subunits, Fanconi anemia I and Fanconi anemia D2 (FANCI-FANCD2) and plays a central role in the repair of DNA interstrand cross-links (ICLs). The complex is activated via DNA damage-induced phosphorylation by ATR (ataxia telangiectasia and Rad3-related) and monoubiquitination by the FA core complex ubiquitin ligase, and it binds to DNA at the ICL site, recognizing branched DNA structures. Defects in the complex cause Fanconi anemia, a cancer predisposition syndrome. The phosphorylation of FANCI may function as a molecular switch to turn on the FA pathway. Length = 1202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1247
KOG4553		1398	consensus Uncharacterized conserved protein [Funct	100.0
PF14678		256	FANCI_S4: FANCI solenoid 4; PDB: 3S51_A 3S4Z_A 3S4	100.0
PF14680		234	FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4	100.0
PF14676		158	FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4	100.0
PF14675		223	FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4	100.0
PF14677		219	FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4	99.96
PF14679		87	FANCI_HD1: FANCI helical domain 1; PDB: 3S51_A 3S4	99.83
PF14631		1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	99.56
KOG4553		1398	consensus Uncharacterized conserved protein [Funct	98.11
KOG4712		1335	consensus Uncharacterized conserved protein [Funct	90.33

>KOG4553 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=8.8e-163  Score=1441.46  Aligned_cols=1117  Identities=25%  Similarity=0.289  Sum_probs=907.3

Q ss_pred             ccccCccccccchHHHHHhhccccch----hhhHHHHHhccccCCCCcccHHHHHHHhhhcCCCchhhHHHHHHHHHhcc
Q 000864            4 VVNLDDAQMLDLLPKCFDLLRESEKG----GDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGM   79 (1247)
Q Consensus         4 ~~~~~~~k~ldLlP~~L~~L~~~~sG----~eyk~~iI~~lc~~~W~~~~l~~l~~mfrdv~L~~k~el~~vv~Kv~~~l   79 (1247)
                      +.+.+.+..+++.|-+++.+  .++|    .+|++.+|++|-+++||..+++.+++||+.++..++.+...+++|++..+
T Consensus       143 ~~~~~~~~~~~~~r~~~n~~--~~~g~~~~~dFv~~~i~~i~~~ew~~~lLT~~vd~fk~~s~ls~g~~s~i~~k~~~~~  220 (1398)
T KOG4553|consen  143 QAEGEADDTENVARGKNNNS--KMSGNQRWKDFVAVFIKDIDQIEWDDELLTEDVDAFKLISELSAGSSSGITTKSIDRF  220 (1398)
T ss_pred             hccchHHHHHhhhhhhcccc--ccccchhhHHHHHHHHHHHHHccCcHHHhhhHHHHHHHHHHhccCccccchhHhhhhH
Confidence            34444555555666666555  3888    89999999999999999999999999999999567799999999999999


Q ss_pred             cCCCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhhhccCCCchhHHHHHhhHHHHHHHHHhhcCChhHHHHHHHhhhh
Q 000864           80 KIVDLQDLPTLVYQLLVLASRGFNKREVIEGIVVFFGSKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVKLD  159 (1247)
Q Consensus        80 ~~l~lqelPpLvyQLLlLs~kg~~k~~vL~gl~~~F~~~~~~~~~~elr~vEgTVLlHI~~Aik~D~eLgke~lk~lK~~  159 (1247)
                      +.++++|+|.|+|||+.||++|+++.+++.|+..||++.+..+-.+.+++.|+|+..|-.|+.|+|+++++|....+++.
T Consensus       221 ~~~~~~elp~l~~ql~~m~S~~~~~~i~~~~~~~yf~~~~~~Rl~s~ic~~e~~~d~~~~f~~k~~~s~~~E~~~tv~h~  300 (1398)
T KOG4553|consen  221 CDEVIVELPGLDTQLDDMDSERKRRSIMTWKSLIYFTKTEKERLNSIICAWEISEDEEKEFMEKRKISEHLEKCLTVGHR  300 (1398)
T ss_pred             hhhhhhhhhhHHHHHHHHhcccchhheehhhhhhHhcchHHHHHHHHHHhcccchHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            99999999999999999999998887899999999999988888899999999999999999999999999999999998


Q ss_pred             ccccchHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchhhhhhHHHHHHHHHHHHhcCCCCcc
Q 000864          160 LRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDSKDEFLQSVKVVEKAVLRSVNESNYGRE  239 (1247)
Q Consensus       160 ~~~lspF~lalLLsva~i~Rf~~~v~d~LK~~i~~~~kd~~~~~~S~Wl~~~~~~~~~~~~~~v~~~il~~V~~S~~g~d  239 (1247)
                      ...++.|.++..++.+|.+.|..-..-+|......++-|......+.|+...-++++.-..+-|...++++|+|+.++|+
T Consensus       301 l~~~n~~~~~~~~~~ir~rkf~~~sl~~l~~~~l~A~~dm~~~~~~~w~~~e~~Ee~~~~~~iv~~~ilrvVkn~~~er~  380 (1398)
T KOG4553|consen  301 LLNINVESAKKFLTFIRTRKFRVLSLIQLCLDRLDAMMDMKKTFQKLWKIGEQAEECLWMSDIVCGRILRVVKNQLSERL  380 (1398)
T ss_pred             HhhccHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            88999999999999999999999999999999999999999999999999999999987777899999999999999999


Q ss_pred             cchHHHHHHHHHhhcccccCc-----ccccccCCchhh---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc-CCCCc
Q 000864          240 HVVPSIVQFGFILLESVEEGS-----LKEHCQSNGLLG---IEKLGIQILKTLFEVHDMARSEIVEQCKFRVLS-LKPEQ  310 (1247)
Q Consensus       240 ~V~~gLv~LgF~LLds~~~k~-----~~~~~~~~g~~~---~~~LG~~IL~~lfk~h~~~r~eIleq~~~ri~s-~~~~~  310 (1247)
                      ||+++++++||.+|++++++.     ..+++++.|+++   ++.|+.+||.++|++|.|.|++|++||++||++ ...+.
T Consensus       381 hv~~sl~~~gf~ll~S~~l~~Vl~g~~~q~~dskgrv~~g~~~kL~~~ill~~fk~Hdm~r~eileq~~kRi~s~~~~S~  460 (1398)
T KOG4553|consen  381 HVNESLRRIGFRLLISLMLLLVLPGYQKQVVDSKGRVADGCTLKLLSRILLIIFKQHDMDRGEILEQLFKRIASSSNNSS  460 (1398)
T ss_pred             hcchHHHHHhhHHHHhhhhhhcccchhhcccccccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            999999999999999976644     345566667666   889999999999999999999999999999999 66677


Q ss_pred             cchHHHHHHHHHhcCCchhhcchHHHHHHHhhhhcCChHHHHHHHHHhhhhhccChhhhHHHHHHHHHhhcccchhhHHH
Q 000864          311 SMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHA  390 (1247)
Q Consensus       311 ~~~~i~lL~~lv~~~p~~vle~~s~l~~~ldyl~~lp~~~a~~Ll~Al~PLik~s~~lrD~lIlvLRKamfsre~~~R~~  390 (1247)
                      +.+++|+|+++|+++|+.+++++++|+|+|||++|||++++++|++||+||||+|+++||++|+|||||||+ ..++|.+
T Consensus       461 ~~i~idll~~lv~~~sL~~l~~s~~v~Elfdy~~fm~g~is~rLi~aviPLiK~S~~lRDalIlVLrKAMf~-~edtvrs  539 (1398)
T KOG4553|consen  461 ALILIDLLRELVRKCSLEILNNSKLVDELFDYVCFMRGDISVRLIRAVIPLIKTSPQLRDALILVLRKAMFC-GEDTVRS  539 (1398)
T ss_pred             hHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-chhhhhh
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             HHHHHHHHHHHhhccccCCCCc-cccCCcc-----cccccc-ccccccc--cchhHHHHHHHHHhhcchhHHHHHHHHhH
Q 000864          391 ATNAIIDLIMAEKQSKTDGSLS-LQDSSSQ-----ASCSQQ-EIPRSTH--GGLFQELSALLQRCLYQQAKVKEVMYQGL  461 (1247)
Q Consensus       391 AV~GfL~lL~~lk~~~~~gs~~-s~~ssSq-----~~sSQ~-~v~~~~~--~~l~lEIlg~LRRCL~Qqa~VR~~LY~gl  461 (1247)
                      ||+|||.+|+++++.+..|+++ +++..+|     .++.|+ +++++.|  ++||+||+|+|||||+|||+||++||+||
T Consensus       540 Av~gvl~lLk~~~kl~~~~~~~~~sSfcsQ~S~Sq~S~~tqn~mgs~~n~~~tl~lEl~G~LrrCL~QQadvk~~LYdgl  619 (1398)
T KOG4553|consen  540 AVPGVLILLKSVSKLREDGGGGQFSSFCSQHSFSQFSTQTQNSMGSKKNVDQTLGLELVGILRRCLWQQADVKIALYDGL  619 (1398)
T ss_pred             hHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999999998888776433 2222233     232222 6777666  99999999999999999999999999999


Q ss_pred             HHHHhcCCCchhhHHHhhHHHHhhhcCCCCC-CccccceeeeecCCceEEeCchhHHHHHHHHHHHhhcCCC-CCCCCCc
Q 000864          462 VKLVLVDPSAGGPIFDFLLPHFLRFFREDSD-VQLGVNLCIKVENGRAFIDEPLDCLLYCVSLILVLQSHGK-SHPSDSA  539 (1247)
Q Consensus       462 ~~~v~~n~~L~~~iLd~L~~Hf~~y~e~~~~-~plkl~~Cv~~~~~~v~L~EPL~~Ll~~i~~~l~~~~~~~-~~~~d~~  539 (1247)
                      |++|+.||++++||||||+|||++||+++.+ .|++++.||.++|++.++.||++||++|+.+.+-.++... .-+.+.+
T Consensus       620 ~~lv~~ns~l~nhVLd~ilsHfr~Ffe~k~de~~l~i~~ciri~gDk~~l~epld~Ll~cl~~~~~~~~q~~l~~l~~~a  699 (1398)
T KOG4553|consen  620 CELVTQNSTLLNHVLDMILSHFRMFFEWKKDEMTLSIGNCIRIVGDKPHLIEPLDCLLSCLLSHDPEFKQEGLELLLRPA  699 (1398)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHHccCCChhhccccccceEEeecCcccccCcHHHHHHHHHhcchHhhhhhhHHHHhhh
Confidence            9999999999999999999999999999887 5799999999999999999999999999933332221111 1144779


Q ss_pred             cccccccccccchhccCCchhHHHHH----HHHHHHHHHhcccccc-ccCCccccccChHH--HHH---HHHHHH-HHHH
Q 000864          540 WTCFGFSLSQDNEEGKNSSAESFSTA----LLKIQKFLRNAKFEDI-LGLGQEEVSTSLAE--EKR---KCCSLI-LLGI  608 (1247)
Q Consensus       540 ~~~~~~~~s~~~e~~~~~~~~~~~~~----l~si~~rm~k~~LeDf-ld~~~e~~s~s~~~--~k~---~~~a~l-~lgi  608 (1247)
                      |||+++.++++.|...  +++.+...    ..+++.||...++.++ +|+..+|+..+..|  .++   ++-|.+ ..|.
T Consensus       700 anc~~~~l~qa~e~~~--~~e~~~~~s~~v~~~v~gRll~~E~~~s~Ldkl~~fs~~~k~g~~~kq~~dtisa~l~r~S~  777 (1398)
T KOG4553|consen  700 ANCMEIWLTQAMENDV--SDEGLDKNSEWVTATVNGRLLFAEMMLSTLDKLIEFSWRRKEGTESKQDADTISALLARRSE  777 (1398)
T ss_pred             hhhhHHHhhcccchhh--hhhhHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhhchHHHHHHHHhhhcc
Confidence            9999999998776321  33444443    5577888888999999 89999998777766  555   777877 5899


Q ss_pred             HHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccCCCCCCcCCCCCCCc
Q 000864          609 IEVVL-------NTIANELEKAADAAKGALEKELIEYIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSCNSNI  681 (1247)
Q Consensus       609 yEvLi-------e~~~~~~s~~~~~~k~~~~~~il~L~~~~~~l~k~~~~~kek~gKk~~~~~~~~~~~~~~~~~~~~k~  681 (1247)
                      |++++       +|.+..++|.++.+++.-.++|+.|+++|+.|.++.-+.+...|+|. +.++.|.+|--+.+..   .
T Consensus       778 C~ill~~~~~~~n~~ik~~eKqp~~~~ns~~~eIl~L~kll~sL~~Dvik~aa~~g~kt-~~~~~N~t~~~~~s~~---~  853 (1398)
T KOG4553|consen  778 CDILLKEKTTTKNEKIKEKEKQPKITINSSQSEILTLAKLLSSLMTDVIKPAANDGNKT-ANATINVTPEIVASVQ---M  853 (1398)
T ss_pred             ceeeecccccccCcchhhhhcCccccccchHHHHHHHHHHHHHHHHHhhccccCCcchh-hhhhccCCchhhhhhh---h
Confidence            99998       69999999988888885557999999999999666655554334432 2233333222221100   0


Q ss_pred             ccccccccchhhHHHHHHHHHHhhhhccCCCccccccccccchhhhhhhcchhHHHHHHHHHHHhhcCCcCCCCCccchh
Q 000864          682 TQERIPFLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISFVLETTFHQIKSSPVVGKEDPLKTL  761 (1247)
Q Consensus       682 ~~~~~~fl~~s~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lrs~~~f~~yvl~~~l~~l~~~~~~~~~~~~r~~  761 (1247)
                      .-...+|+..|.|+.|+.-....+++-                                              ..|.++.
T Consensus       854 e~~~~~~~~aS~l~slfl~~~~~y~S~----------------------------------------------~sptste  887 (1398)
T KOG4553|consen  854 ELLVWVVGRASVLSSLFLKEYRPYHSI----------------------------------------------LSPTSTE  887 (1398)
T ss_pred             hhhhhhhhhHHHHHHHHHHhhhhhhcc----------------------------------------------cCcchHH
Confidence            011145566666665553222222211                                              1233331


Q ss_pred             --hh-ccccccchhHHH-HHHHhcCCCCccchhhhhhhccccchh-h-hHHHHHHHHHHHHHHHhhccChhhHHHHhhhc
Q 000864          762 --IY-GDMKVLGPPLLK-LIFLLKSRPKSTTDQKRKEIKVRKDVE-E-HLCLALICLRDLITISLQNSQLTGLLEDLLSV  835 (1247)
Q Consensus       762 --~~-~di~~l~~~l~~-li~~~~~~~~~~~d~~kk~~kg~~~~e-~-~~~lAl~cf~ell~~~~~~~~~~~l~~fL~~l  835 (1247)
                        ++ -+|++.   ++. |+.+..              .-|+.|. + .++.-+.|+.+|+++-+...+..+..+|..+.
T Consensus       888 kSl~~~~igk~---is~lC~~~~~--------------eL~k~f~~~~~al~p~~ki~qfLk~~~a~t~T~Ke~~~red~  950 (1398)
T KOG4553|consen  888 KSLSKSLIGKY---ISNLCSSWVS--------------ELDKGFPTRTLALEPYAKILQFLKIKFAQTPTRKESAWREDK  950 (1398)
T ss_pred             HHhHHHHHHHH---HHHHHhcccc--------------ccccCCchHHHHhhhHHHHHHHhhHHhhcCcchhhhhhhhcc
Confidence              11 244443   666 554433              1233444 3 33333478888888855566888888887765


Q ss_pred             ccccccccccccccccccchhhhHHHHHHHHHHHHHHHHh--h-hhcch--hh----HHHHHHHHHHHhccCCCCCccc-
Q 000864          836 SKLEYALDYESDESSRLDDLNVRSKELFIEKLLKPLISEL--L-LLSFF--RE----VEILCDIIVMIGNELPCKWKNS-  905 (1247)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~l--l-~~~~f--ke----~~~L~~il~~l~~~L~~~~~~~-  905 (1247)
                      |-     +++.   ....+....|.     .+.+.++.-+  . ..+|+  ||    .+..+.++..+...|.|.+.++ 
T Consensus       951 Dg-----~~~~---~k~~R~~~nIy-----~~q~~L~~ll~~~~q~eD~~~eE~e~e~kL~v~~e~sl~kiLkp~s~qf~ 1017 (1398)
T KOG4553|consen  951 DG-----EDEE---TKRKRQEPNIY-----ALQQALFLLLRLFRQIEDVENEEIEEEKKLKVQYEMSLRKILKPASAQFS 1017 (1398)
T ss_pred             cc-----hhHH---HHhhccchhHH-----hHHHHHHHHHHhccccccchhhhhhhhhhhHHHHHHHHHHHhccccHHHH
Confidence            41     1111   11112222222     2223322221  1 23566  44    2366788888888888888764 


Q ss_pred             ----------hhhHHHhhhhhcCCCchHHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHHhCCCCCCc-ccccccccccc
Q 000864          906 ----------HGTWAEGFCKSNSITNANVVKSVVKLAICLSSPPNDLFVAQSLAQELLKVTGSGSSDS-LEVSELYPLIN  974 (1247)
Q Consensus       906 ----------~~sW~~~iCk~~~i~d~~~~k~l~~Ll~~l~~~p~dl~~l~dla~~L~~~lG~i~~d~-~e~~~~f~iIn  974 (1247)
                                +++|+++||+++++.|+.|+|+.+.|+|+++.. .+..++.++|++||++||.||+|. .|.+++|.++|
T Consensus      1018 l~~n~k~~~~~~tW~~kiC~~ne~~N~~m~ks~~kL~is~~~s-~~~~~~~~vAqelh~imG~ided~~~E~~E~~~~~i 1096 (1398)
T KOG4553|consen 1018 LTKNVKVWSNLFTWVVKICEDNEFYNNQMLKSYCKLIISCSLS-HCADSDKTVAQELHEIMGNIDEDLSEENEEMKYHFI 1096 (1398)
T ss_pred             hhcchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhheeccc-CcchhHHHHHHHHHHHHhccccccchhhhhheeEee
Confidence                      379999999999999999999999999999865 344789999999999999999987 88889999999


Q ss_pred             cccHH-HHHHHHHHHHHHHhhhHHHHHHHhhccccccccCcc-cCCCcccccchhhHHhHHHHHHHHHHHHHHHHhhccC
Q 000864          975 HSTST-TILSCILQLTEEVVSDMDWAIKKVKTFSLVTQKGIH-VNHDEDHVSGLGFEENLYSRTEALVKVLSSFVLMSLK 1052 (1247)
Q Consensus       975 ~~Ta~-sv~~~l~~~v~~~L~dvdWli~klk~~~~~~~~~~~-~~~~~~~~~~~~~E~~l~~ql~~l~~~l~~Lv~~~lp 1052 (1247)
                      .+|+. +|+.++++++++.|.||||+++|+|++.+ .++..+ ++..++... +++||++|.|+++++++|++|++|++|
T Consensus      1097 s~Tti~sv~~~~l~~ieK~L~dvDwa~TKlKn~~v-kq~v~~e~d~t~~t~~-~~meeai~~qv~~ilrif~~lv~m~lp 1174 (1398)
T KOG4553|consen 1097 SKTTINSVIEFQLMFIEKTLADVDWAFTKLKNFFV-KQPVFDEMDCTLLTKC-DSMEEAIELQVSRILRIFVQLVMMQLP 1174 (1398)
T ss_pred             ecccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCcccchHHhhHhhcC-chHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99876 99999999999999999999999999664 554443 444555554 999999999999999999999999999


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHhhhhccccccccCCChHHHHHHHHhccCCchhHHHHHHHhhhcc------cccc---
Q 000864         1053 -DPQAEHFLRLATRLYKHLAQMSKLRIAPKGCKQLLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQ------LENA--- 1122 (1247)
Q Consensus      1053 -g~~~d~llk~l~k~Y~~Lt~l~K~~i~~~~~~~~~p~~~FekLvkl~g~~Lt~~~Y~fItyvq~~q------~e~~--- 1122 (1247)
                       |+++|++||+++++|++|+++||||+++++|.+.+| .+||+|||++|+|||++||.||+|+|++.      ++.+   
T Consensus      1175 ~gS~md~llkll~~~Yt~L~~LtK~yi~~~~s~~~ip-~kfekLVkl~gk~Lta~~Y~fIsyiq~k~~~l~~q~qkk~~~ 1253 (1398)
T KOG4553|consen 1175 VGSIMDSLLKLLQMGYTLLQNLTKGYIKSEMSEWQIP-NKFEKLVKLKGKPLTAMVYDFISYIQGKDEMLKKQSQKKRYA 1253 (1398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhcc-HHHHHHHHhhcCcCchhHHHHHHHHhchHHHHHHHHHHHHhh
Confidence             899999999999999999999999999999999999 89999999999999999999999999862      1111   


Q ss_pred             ---cchhhhhhhhhhccCCchhhHHHHhHHHHHHHhhcccccchhhhhccccccCccccCC----CCCCCCCCCcCCchh
Q 000864         1123 ---SSKGILNKIKRENKCIPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKILDT----VGEGDASNNEANDNE 1195 (1247)
Q Consensus      1123 ---~~k~~~~kilREtK~IP~LIf~IEqyEK~LI~LSKksKvNLm~~~K~StsRDFRI~~~----~~~~~~~~~~~~~~~ 1195 (1247)
                         ..++..|||+||||+||++||+|||||||+||||||||+||++|+|+||+|||||+.+    +++||++++|++.+.
T Consensus      1254 vs~~~~~~~aKvlrEtk~IP~lIfvIEd~eKflIqLSKksK~NL~~h~klsT~RDFkIk~~~lr~al~EDged~eEe~Et 1333 (1398)
T KOG4553|consen 1254 VSKRDEKLFAKVLRETKAIPHLIFVIEDLEKFLIQLSKKSKKNLFLHNKLSTYRDFKIKMEVLRNALSEDGEDNEEECET 1333 (1398)
T ss_pred             hhhhhHHHHHHHHhhhcCCcceeehHHHHHHHHHHHhhhhHHHHHHHhhhccccccccchhcchhhhccccccccccccc
Confidence               2346779999999999999999999999999999999999999999999999999987    666666666666667


Q ss_pred             hhhc--CCCCCCCcCC
Q 000864         1196 AAEA--GDNSSEDSKD 1209 (1247)
Q Consensus      1196 ~~~~--~~~~~~~~~~ 1209 (1247)
                      +++|  +|++.+|+++
T Consensus      1334 anenggeDd~~q~~~~ 1349 (1398)
T KOG4553|consen 1334 ANENGGEDDSMQDEEI 1349 (1398)
T ss_pred             hhcccCCCcccccccc
Confidence            7776  4555666665

>PF14678 FANCI_S4: FANCI solenoid 4; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14679 FANCI_HD1: FANCI helical domain 1; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B	Back alignment and domain information

>KOG4553 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4712 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1247
3s4w_A		1308	Structure Of The Fanci-Fancd2 Complex Length = 1308		7e-47
3s4w_A		1308	Structure Of The Fanci-Fancd2 Complex Length = 1308		1e-19

>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex Length = 1308

Back alignment and structure

Iteration: 1

Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 150/537 (27%), Positives = 259/537 (48%), Gaps = 63/537 (11%) Query: 29 GGDYVNLVFDRLLDCDWSKGLLLKLVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLP 88 G +Y + D L W + +++L S+ +++ + + KV ++LQ++P Sbjct: 153 GEEYKRQLIDTLCSVRWPQRYMIQLTSVFKDVCL-TPEEMNLVVAKVLTMFSKLNLQEIP 211 Query: 89 TLVYQLLVLASRGFNKREVIEGIVVFFG---------------SKMGSKVTSIVRQVEGT 133 LVYQLLVL+S+G ++R V++GI+ FF S++ + + VEGT Sbjct: 212 PLVYQLLVLSSKG-SRRSVLDGIIAFFRELDKQHREEQSSDELSELITAPADELYHVEGT 270 Query: 134 VLLHVNFAVKQDPSLGQEVMGLVKLDL-----RAFNHFAVAVLLSVARIRKFSESAMGIL 188 V+LH+ FA+K D LG+E++ +K + F++A+LLS+ RI++F E +L Sbjct: 271 VILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLL 330 Query: 189 KTALLTAYRDYKFSKDCMWLPNDSKDEFLQSV----KVVEKAVLRSVNESNYGREHVVPS 244 KT+++ +++D + L SK FLQ++ V +L V S + +HV Sbjct: 331 KTSVVKSFKD-------LQLLQGSK--FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQG 381 Query: 245 IVQFGFILLES-----------VEEG-SLKEHCQSNGLLGIEKLGIQILKTLFEVHDMAR 292 +++FGFIL++S VE G SL + + KLG IL F++H+M R Sbjct: 382 LIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHAC----KLGANILLETFKIHEMIR 437 Query: 293 SEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQNYPYPMLEHVSRLKELLDYFTFMHGKVAT 352 EI+EQ RV++ + L +++ P +L++ S++ E DY TF+ + Sbjct: 438 QEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPL-ILQNCSKVTETFDYLTFLPLQTVQ 496 Query: 353 YLVTALLPLINISRDLQDYTILVVRKAMFRREDAVRHAATNAIIDLIMAEKQSKTDGXXX 412 L+ A+ PL+ IS ++D ILV+RKAMF + R +A + L+ K K G Sbjct: 497 GLLKAVQPLLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLL---KNFKVLGSLP 553 Query: 413 XXXXXXXXXXXXXEIP-RSTHGGLFQELSAL-----LQRCLYQQAKVKEVMYQGLVKLVL 466 + S + + E L L+R L QQA ++ ++Y G ++ Sbjct: 554 SSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVLR 613 Query: 467 VDPSAGGPIFDFLLPHFLRFFREDSDV--QLGVNLCIKVENGRAFIDEPLDCLLYCV 521 + I L +F+ + D+ L + C+ + + F+ EPLD LL C+ Sbjct: 614 RNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGACVLTQGSQIFLQEPLDHLLSCI 670

PyMOL of 3s4w

>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex Length = 1308

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1247
3s51_A		1308	Protein FACI, fanconi anemia group I protein homol	0.0
3s4w_B		1323	Protein FACD2, fanconi anemia group D2 protein hom	6e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A Length = 1308	Back alignment and structure

 Score =  581 bits (1498), Expect = 0.0
 Identities = 274/1260 (21%), Positives = 517/1260 (41%), Gaps = 137/1260 (10%)

Query: 3    QVVNLDDAQMLDLLPKCFDLLRESEK----------GGDYVNLVFDRLLDCDWSKGLLLK 52
            +   L + + L+LLP     L   ++          G +Y   + D L    W +  +++
Sbjct: 117  REDRLVNGKSLELLPIILTALATKKEVLACGKGDLNGEEYKRQLIDTLCSVRWPQRYMIQ 176

Query: 53   LVSIVRELGFFDKRRCSEFLMKVFEGMKIVDLQDLPTLVYQLLVLASRGFNKREVIEGIV 112
            L S+ +++        +  + KV      ++LQ++P LVYQLLVL+S+G ++R V++GI+
Sbjct: 177  LTSVFKDVCL-TPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKG-SRRSVLDGII 234

Query: 113  VFFG---------------SKMGSKVTSIVRQVEGTVLLHVNFAVKQDPSLGQEVMGLVK 157
             FF                S++ +     +  VEGTV+LH+ FA+K D  LG+E++  +K
Sbjct: 235  AFFRELDKQHREEQSSDELSELITAPADELYHVEGTVILHIVFAIKLDCELGRELLKHLK 294

Query: 158  -----LDLRAFNHFAVAVLLSVARIRKFSESAMGILKTALLTAYRDYKFSKDCMWLPNDS 212
                    +    F++A+LLS+ RI++F E    +LKT+++ +++D +  +   +L    
Sbjct: 295  AGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLLKTSVVKSFKDLQLLQGSKFLQT-- 352

Query: 213  KDEFLQSVKVVEKAVLRSVNESNYGREHVVPSIVQFGFILLESV--------EEGSLKEH 264
                +     V   +L  V  S +  +HV   +++FGFIL++S         +   +   
Sbjct: 353  ---LVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTS 409

Query: 265  CQSNGLLGIEKLGIQILKTLFEVHDMARSEIVEQCKFRVLSLKPEQSMSVIRLIGNLVQN 324
                      KLG  IL   F++H+M R EI+EQ   RV++         + L  +++  
Sbjct: 410  LSKMTNQHACKLGANILLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMY 469

Query: 325  YPYPMLEHVSRLKELLDYFTFMHGKVATYLVTALLPLINISRDLQDYTILVVRKAMFRRE 384
             P  +L++ S++ E  DY TF+  +    L+ A+ PL+ IS  ++D  ILV+RKAMF  +
Sbjct: 470  APL-ILQNCSKVTETFDYLTFLPLQTVQGLLKAVQPLLKISMSMRDSLILVLRKAMFASQ 528

Query: 385  DAVRHAATNAIIDLIMAEKQ--SKTDGSLSLQDSSSQASCSQQ-EIPRSTHGGLFQELSA 441
               R +A    + L+   K   S      +     +Q             +     E+  
Sbjct: 529  LDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIID 588

Query: 442  LLQRCLYQQAKVKEVMYQGLVKLVLVDPSAGGPIFDFLLPHFLRFFREDSDV--QLGVNL 499
             L+R L QQA ++ ++Y G   ++  +      I   L     +F+  + D+   L +  
Sbjct: 589  SLKRSLGQQADIRLMLYDGFYDVLRRNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGA 648

Query: 500  CIKVENGRAFIDEPLDCLLYCVSLILVLQSHGKSHPSDSAWTCFGFSLSQDNEEGKNSSA 559
            C+  +  + F+ EPLD LL C+   L                        + EE +    
Sbjct: 649  CVLTQGSQIFLQEPLDHLLSCIQHCLAWYKSRVVPLQQGD----------EGEEEEEELY 698

Query: 560  ESFSTALLKIQKFLRNAKFEDI-LGLGQEEVSTSLAEEKRKCCSLILLGIIEVVLNTIAN 618
                  L  I   +  ++ ED  L    +    +    K   C+ +++G+ EV++    +
Sbjct: 699  SELDDMLESITVRMIKSELEDFELDKSADFSQNTNVGIKNNICACLIMGVCEVLMEYNFS 758

Query: 619  ELEKAADAAKGALEKELIE-YIVLHDALEKDSGVSRQSNARKVNVRASAHGTPATIPDSC 677
                +    +  L   L   Y    D L + +G  +     KV              DS 
Sbjct: 759  ISNFSKSKFEEILS--LFTCYKKFSDILSEKAGKGKAKMTSKV-------------SDSL 803

Query: 678  NSNITQERIPFLATSSIFKLLQTVLQLYHTECSNSTATSQKHSQSSSAETLKRCSKIISF 737
             S                  L+ V  L      +S  + ++         L+   + + +
Sbjct: 804  LS------------------LKFVSDLLTALFRDSIQSHEESLS-----VLRSSGEFMHY 840

Query: 738  VLETTFHQIKSSPVVGKEDPLKTLIYGDMKVLGPPLLKLIFLLKSRPKSTTDQKRKEIKV 797
             +  T  +I+     G            +      + +++    +   ++ ++  K    
Sbjct: 841  AVNVTLQKIQQLIRTGHVSGPDGQNPDKIFQNLCDITRVLLWRYTSIPTSVEESGK---- 896

Query: 798  RKDVEEHLCLALICLRDLITISLQN--SQLTGLLEDLLSVSKLEYALDYESDESSRLDDL 855
            ++  +    L L  L+   ++ LQ    ++   L+ L  +         E +E+      
Sbjct: 897  KEKGKSISLLCLEGLQKTFSVVLQFYQPKVQQFLQALDVMGT-------EEEEAGVTVTQ 949

Query: 856  NVRSKELFIEKLLKPLISELLLLSFFREVEILCDIIVMIGNELPCKWKN--SHGTWAEGF 913
                +    ++ L  L+S        +E  +L  ++  +   L           +W    
Sbjct: 950  RASFQIRQFQRSLLNLLSSEEDDFNSKEALLLIAVLSTLSRLLEPTSPQFVQMLSWTSKI 1009

Query: 914  CKSNSITNANVVKSVVKLAICLSSP-PNDLFVAQSLAQELLKVTGS-GSSDSLEVSELYP 971
            CK  S  +A+  KS++ L   L     + + + + L+Q++    G       +E ++ + 
Sbjct: 1010 CKEYSQEDASFCKSLMNLFFSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKTDHFA 1069

Query: 972  LINHSTST-TILSCILQLTEEVVSDMDWAIKKVKTF----SLVTQKGIHVNHDEDHVSGL 1026
            ++N  T+  T+   +L   E+V+ ++DW I K+K      +L  +        +     L
Sbjct: 1070 VVNLRTAAPTVCLLVLSQAEKVLEEVDWLIAKIKGSANQETLSDKVTPEDASSQAVPPTL 1129

Query: 1027 GFEENLYSRTEALVKVLSSFVLMSLKDPQA-EHFLRLATRLYKHLAQMSKLRIAPKGCKQ 1085
              E+ +  +   LV      V  +L      +  L+  +++Y  L    K  +      +
Sbjct: 1130 LIEKAIVMQLGTLVTFFHELVQTALPSGSCVDTLLKGLSKIYSTLTAFVKYYLQVCQSSR 1189

Query: 1086 LLPSLEFQRLVELTCKQLTVPLYNFVAEMQRGQLEN--------ASSKGILNKIKRENKC 1137
             +P+   ++LV+L+   LT   Y+F++ +Q    +         A+    + K+ RE K 
Sbjct: 1190 GIPN-TVEKLVKLSGSHLTPVCYSFISYVQNKSSDAPKCSEKEKAAVSTTMAKVLRETKP 1248

Query: 1138 IPDLIFQIEDYEKYLIQLSKVSKINLLRHAKRSTSRDFKI----LDTVGEGDASNNEAND 1193
            IP+L+F IE YEK+LIQLSK SK+NL++H K STSRDFKI    LD V   D  ++  + 
Sbjct: 1249 IPNLVFAIEQYEKFLIQLSKKSKVNLMQHMKLSTSRDFKIKGSVLDMVLREDEEHHHHHH 1308

PyMOL of 3s51

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Length = 1323	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00