Citrus Sinensis ID: 000886

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------124
MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
ccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHcHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccEcccccccHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHccccccccccccccccccccHEcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccEEEEccccccEEEccccccccccccccHHHHHHHHHHHcccccccccHcccccccccEHHHHHHHHEEEcccccccEcccccccEEcccccccccEcccccccEEEEEccccccHHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEcccccccccEEEEccccccccccccc
maapfaegggggggvavmpgpvnpidastqsktclkhsalkspILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdinKLLERYHFFRAIYKHHcnaedevifpalDIRVKNIARTYslehegesvLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSipvnmmaeflpwlsssissdehQDMRKCLCKIIPKEKLLRQVIFAWMEgvkvsdksceDNLEHRCQRwfscacessrsskrKYVELSYdltdssmscpideIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHsiaedkvifpAVDVELSFAQEHAEEEIQFDKLRCLIESIQsagansstAEFYTKLCSQADLIMASIQKHFRneevqvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGwackghsrnvclsssaigccpakTLAASKELKedikqpfcactckssaDEKLMLVQedeaddekrpvkrgnsmlledcdacsgaksvntpsssrsnqsccvpglgvsssnlgSSLAAAKSlrslsfspsapslnsslfnwetdlssadigcasrpidnIFKFHKAIRKDLeyldgesgklndcnETFLRQFTGRFRLLWGLYRahsnaeddivfpalesketlsnvshsytldhkqEEKLFEDISSALSELTELHEClstdltgdltrnslescdqneTVRKYNEKATELQGMCKSIRVTLDQHVFREElelwplfdrhfsveEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNewwegppapaaaahkatsescislgsdvhesldhsdhtfkpgwnDIFRMNQNELEAEIRKvsrdstldpRRKAYLIQNLMTSRWIASQQKSLQARdseisngedlfgcspsfrdaekqvfgcehykrncklraaccgklftcrfchdkvsdhsmdrkATTEMMCMRclkvqpvgpvcttlscsglsmaKYYCGIckffddervvyhcpfcnlcrvgrglgvdffhcmtcncclakklvdhkcrekgletncpiccdflftssatvralpcghfmhsdcfqaytcshyicpicskslGDMAVYFGMLDALLASEQLPEEYRDRCQEILcndcdkkgsapfhwlyhkcgfcgsynTRVIKVEstntycstsnp
maapfaegggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWfscacessrsskrKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSagansstaEFYTKLCSQADLIMASIQKHFRNEEVQvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLvqedeaddekrpvkrgnsmlLEDCDACSGAKsvntpsssrsnqSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEyldgesgklndCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTdltgdltrnslescdqnetvRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIrkvsrdstldprRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEstntycstsnp
MAAPFAEgggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPglgvsssnlgsslaaakslrslsfspsapslnsslfnWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGppapaaaaHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
*********************************CLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN*********************************QVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSIS***HQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACES*****RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK*******************************************************************************************LFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPAL********************************ELTELHECLSTDLTG******************Y**KATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG********************************TFKPGWNDIFRM**********************KAYLIQNLMTSRWIA******************LFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTY******
****************************************KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWM***************************************************IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELS***********FDKLRCLIESIQS*G*****AEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNV******************************************************************************************V***GVS********************************W*TDLSS****CASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE***************ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLN*************************************************************************YLIQNLMT**************************************FGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRV***************
***********GGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCA********RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQED********VKRGNSMLLEDCDAC******************CVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPP***********ESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAS***********ISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEST*********
********************PVN*I*********L*HSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGV********************************************MSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK************************************************RSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLS**************CDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG*****************************SDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQK*******************PSF****KQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1237 2.2.26 [Sep-21-2011]
O14099425 Uncharacterized RING fing yes no 0.240 0.701 0.364 1e-56
Q96PM5261 RING finger and CHY zinc yes no 0.189 0.896 0.441 2e-50
Q9CR50261 RING finger and CHY zinc yes no 0.193 0.915 0.428 1e-49
Q6IRP0312 RING finger protein 126-B N/A no 0.040 0.160 0.411 5e-05
Q6DIP3311 RING finger protein 126 O no no 0.038 0.154 0.450 6e-05
Q7T0Q3312 RING finger protein 126-A N/A no 0.038 0.153 0.450 0.0002
Q9D0C1305 E3 ubiquitin-protein liga no no 0.038 0.157 0.470 0.0008
Q9Y4L5304 E3 ubiquitin-protein liga no no 0.049 0.200 0.406 0.0009
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 Back     alignment and function desciption
 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 917  QNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSP 976
            Q+ +  +I ++   S L  +RKA L+Q ++ S ++  ++   +  D    +  DL     
Sbjct: 74   QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDL---EK 130

Query: 977  SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1036
            ++ D E+++ GC HY RNCK++   C + +TCR CH+   DH ++R A   M+CM C KV
Sbjct: 131  TYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKV 190

Query: 1037 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDE--RVVYHCPFCNLCRVGRGLGVDFFHCMT 1094
            QP    C    C    M +YYC  CK +DD+  +  YHC  C +CR+GRGLG D+FHC T
Sbjct: 191  QPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKT 247

Query: 1095 CNCCLAKKLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY 1153
            C  CL   + + H+C E+  + NCPIC +++F S   V  L C H +H  C + Y  ++Y
Sbjct: 248  CGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNY 307

Query: 1154 ICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCG 1213
             CP C K++ ++   F +LD  +  + +P  Y      I CNDC+ +    +H+L HKC 
Sbjct: 308  RCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCN 367

Query: 1214 FCGSYNT 1220
             C SYNT
Sbjct: 368  SCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 Back     alignment and function description
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 Back     alignment and function description
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 Back     alignment and function description
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1237
2241084451224 predicted protein [Populus trichocarpa] 0.974 0.985 0.813 0.0
2254240351237 PREDICTED: uncharacterized protein LOC10 0.987 0.987 0.789 0.0
2555721301306 zinc finger protein, putative [Ricinus c 0.973 0.921 0.793 0.0
3064080561233 TMV-associated RING finger protein [Nico 0.957 0.961 0.724 0.0
4494390891256 PREDICTED: uncharacterized protein LOC10 0.991 0.976 0.693 0.0
4494975691256 PREDICTED: uncharacterized protein LOC10 0.991 0.976 0.693 0.0
2254559841234 PREDICTED: uncharacterized protein LOC10 0.954 0.957 0.714 0.0
3565130681236 PREDICTED: uncharacterized protein LOC10 0.983 0.984 0.688 0.0
3565311941238 PREDICTED: uncharacterized protein LOC10 0.987 0.987 0.683 0.0
3565244291234 PREDICTED: uncharacterized protein LOC10 0.982 0.984 0.695 0.0
>gi|224108445|ref|XP_002314849.1| predicted protein [Populus trichocarpa] gi|222863889|gb|EEF01020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2031 bits (5261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1005/1236 (81%), Positives = 1081/1236 (87%), Gaps = 30/1236 (2%)

Query: 18   MPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGD 77
            M GPVNPID S  SKTCLK+SALKSPILIFLFFHKAI+SELD LHRAA+AFAT    GGD
Sbjct: 1    MAGPVNPIDPSAPSKTCLKNSALKSPILIFLFFHKAIRSELDGLHRAAIAFATT---GGD 57

Query: 78   INKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN 137
            I  LLERY+ FR+IYKHHCNAEDEVIFPALDIRVKN+ARTYSLEHEGESVLFDQLFELLN
Sbjct: 58   IKPLLERYYLFRSIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGESVLFDQLFELLN 117

Query: 138  SSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIP 197
            S+M+NEESYRRELAS TGALQTSI QHMSKEEEQVFPLLIEKFSFEEQASL WQFLCSIP
Sbjct: 118  SNMQNEESYRRELASRTGALQTSIDQHMSKEEEQVFPLLIEKFSFEEQASLAWQFLCSIP 177

Query: 198  VNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSD--KSCEDN 255
            VNMMAEFLPWLSSSISSDEHQDM KCLCKIIP+EKLLRQVIF+WM+G K+S+  KSCEDN
Sbjct: 178  VNMMAEFLPWLSSSISSDEHQDMHKCLCKIIPEEKLLRQVIFSWMKGAKLSETCKSCEDN 237

Query: 256  LEHRCQRWFS-----------CACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAI 304
             +  CQ   +           CACESSR  KRKY+EL+ D T S+   PIDEI+LWHNAI
Sbjct: 238  SKAWCQDSGAPTLGCQSMKGHCACESSRMGKRKYMELNCDATLSTEFHPIDEILLWHNAI 297

Query: 305  KRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQ 364
            KRELNDI EAAR IQ SGDFS+LS+FNKRLQFIAEVCIFHSIAEDK+IFPAVD ELSFAQ
Sbjct: 298  KRELNDITEAARSIQHSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKIIFPAVDAELSFAQ 357

Query: 365  EHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPL 424
            EHAEEE+QFDKLRCLIESIQ+AGA +S  +FYTKLCSQAD IM +IQKHF+NEEVQVLPL
Sbjct: 358  EHAEEEVQFDKLRCLIESIQNAGAYTSLTDFYTKLCSQADQIMDNIQKHFQNEEVQVLPL 417

Query: 425  ARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAA--SDSAL 482
            AR+HFS KRQRELLYQSLCVMPLKLIECVLPWLVGSLSEE ARSFLQN+YMAA  SDSAL
Sbjct: 418  ARKHFSAKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEAARSFLQNMYMAAPASDSAL 477

Query: 483  ITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLML 542
            +TLF+GWACKG S+NVCLSSSAIGCCP + LA ++E   D KQ  C C+ +SS DEK   
Sbjct: 478  VTLFSGWACKGGSKNVCLSSSAIGCCPVRILAGTEE---DTKQQSCKCSPRSSVDEKSSF 534

Query: 543  VQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLG-S 601
            VQ D ADD +RP K GN +  ED + C  ++ V+T  SS SN+SCCVPGLGVSS+NLG S
Sbjct: 535  VQVDGADDCRRPGKCGNLLAQEDSNGCPSSEPVDTQKSSCSNKSCCVPGLGVSSNNLGIS 594

Query: 602  SLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYL 661
            SLAAAKSLRS SFSPSAPSLNSSLFNWE D S  +IGC+SRPIDNIF+FHKAIRKDLEYL
Sbjct: 595  SLAAAKSLRS-SFSPSAPSLNSSLFNWEMDTSPTNIGCSSRPIDNIFQFHKAIRKDLEYL 653

Query: 662  DGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLD 721
            D ESGKLN+CNET LRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETL NVSHSYTLD
Sbjct: 654  DVESGKLNECNETLLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLD 713

Query: 722  HKQEEKLFEDISSALSELTELHECL-STDLTGDLTRNSLESCDQNETVRKYNEKATELQG 780
            HKQEEKLFEDISSALSELT+L + L +T+   +L        D N TVR+YNE AT+LQG
Sbjct: 714  HKQEEKLFEDISSALSELTQLQDYLKNTNHADELIGKHANLSDCNYTVRQYNELATKLQG 773

Query: 781  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSAL 840
            MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVG+IIGTTGAEVLQSMLPWVTSAL
Sbjct: 774  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGQIIGTTGAEVLQSMLPWVTSAL 833

Query: 841  TQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDH 900
            T EEQN MMDTWKQATKNTMFSEWLNEWWEG    AA  H  TSESC    +D+HESLD 
Sbjct: 834  TLEEQNRMMDTWKQATKNTMFSEWLNEWWEG--TFAATPHATTSESC----TDLHESLDQ 887

Query: 901  SDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQA 960
            SDHTFKPGW DIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIA+QQKS QA
Sbjct: 888  SDHTFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQA 947

Query: 961  RDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSM 1020
            R  + SNG DL GCSPSFR  EKQ FGCEHYKRNCKLRA CCGKLF CRFCHDKVSDHSM
Sbjct: 948  RTGDHSNGGDLLGCSPSFRGPEKQEFGCEHYKRNCKLRATCCGKLFACRFCHDKVSDHSM 1007

Query: 1021 DRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCR 1080
            DRKAT+EMMCMRCLK+QPVGPVCT++SC G SMAKYYC ICKFFDDER VYHCPFCNLCR
Sbjct: 1008 DRKATSEMMCMRCLKIQPVGPVCTSISCGGFSMAKYYCSICKFFDDERAVYHCPFCNLCR 1067

Query: 1081 VGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFM 1140
            VG GLG DFFHCM CNCCLA KL DHKCREKGLETNCPICCD +FTSSA+V+ALPCGHFM
Sbjct: 1068 VGTGLGADFFHCMKCNCCLAMKLADHKCREKGLETNCPICCDDMFTSSASVKALPCGHFM 1127

Query: 1141 HSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKK 1200
            HS CFQAYTCSHYICPICSKSLGDM+VYFGMLDALLASE+LPEEYRDRCQ+ILCNDCDKK
Sbjct: 1128 HSTCFQAYTCSHYICPICSKSLGDMSVYFGMLDALLASEELPEEYRDRCQDILCNDCDKK 1187

Query: 1201 GSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSN 1236
            G+APFHWLYHKC FCGSYNTRVIKV+ST++ CSTSN
Sbjct: 1188 GTAPFHWLYHKCRFCGSYNTRVIKVDSTDSNCSTSN 1223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424035|ref|XP_002279535.1| PREDICTED: uncharacterized protein LOC100255880 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572130|ref|XP_002527005.1| zinc finger protein, putative [Ricinus communis] gi|223533640|gb|EEF35377.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|306408056|dbj|BAJ16529.1| TMV-associated RING finger protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513068|ref|XP_003525236.1| PREDICTED: uncharacterized protein LOC100801725 [Glycine max] Back     alignment and taxonomy information
>gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] Back     alignment and taxonomy information
>gi|356524429|ref|XP_003530831.1| PREDICTED: uncharacterized protein LOC100803002 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1237
TAIR|locus:20896781254 BTS "BRUTUS" [Arabidopsis thal 0.955 0.942 0.641 0.0
TAIR|locus:20112661254 AT1G18910 [Arabidopsis thalian 0.249 0.246 0.608 1.3e-235
TAIR|locus:20271761259 AT1G74770 [Arabidopsis thalian 0.253 0.249 0.603 2.7e-235
POMBASE|SPAC2F3.16425 SPAC2F3.16 "ubiquitin-protein 0.270 0.785 0.345 6e-62
ASPGD|ASPL0000053938 522 AN10185 [Emericella nidulans ( 0.198 0.469 0.438 1.6e-61
UNIPROTKB|J9NZR5259 RCHY1 "Uncharacterized protein 0.194 0.930 0.437 2.8e-57
TAIR|locus:2099212287 AT3G62970 [Arabidopsis thalian 0.208 0.898 0.425 2.6e-56
UNIPROTKB|Q96PM5261 RCHY1 "RING finger and CHY zin 0.185 0.877 0.446 4.2e-56
RGD|1359180261 Rchy1 "ring finger and CHY zin 0.185 0.877 0.446 1.4e-55
MGI|MGI:1915348261 Rchy1 "ring finger and CHY zin 0.185 0.877 0.442 3e-55
TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4051 (1431.1 bits), Expect = 0., P = 0.
 Identities = 779/1215 (64%), Positives = 912/1215 (75%)

Query:    42 SPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDE 101
             SPILIFLFFHKA+ SEL+ LHR A+ FAT  G   D+  L ERY F R+IYKHHCNAEDE
Sbjct:    53 SPILIFLFFHKAVCSELEALHRLALEFAT--GHHVDLRLLRERYRFLRSIYKHHCNAEDE 110

Query:   102 VIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSI 161
             VIF ALDIRVKN+A+TYSLEH+GES LFD LFELLNS+   +ESYRRELA  TGALQTS+
Sbjct:   111 VIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDESYRRELARSTGALQTSV 170

Query:   162 SQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMR 221
             SQH++KE++QVFPLLIEKF +EEQA +VW+FLCSIPVNM+A FLPW+SSSIS DE ++M+
Sbjct:   171 SQHLAKEQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISSSISVDESKEMQ 230

Query:   222 KCLCKIIPKEKLLRQVIFAWMEGVKVSDKSC--EDNLEHRCQRWFS-----------CAC 268
              CL KI+P EKLL+QVIF W+ G   +  SC  ED++   C    S           CAC
Sbjct:   231 TCLKKIVPGEKLLQQVIFTWLGGKSNTVASCRIEDSMFQCCLDSSSSMLPCKASREQCAC 290

Query:   269 ESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLS 328
             E S+  KRKY EL+ +   S    P+DEI LWH +I +E+ +IA+ ARKIQLSGDFSDLS
Sbjct:   291 EGSKIGKRKYPELT-NFGSSDTLHPVDEIKLWHKSINKEMKEIADEARKIQLSGDFSDLS 349

Query:   329 AFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGA 388
             AF++RLQ+IAEVCIFHS+AEDK+IFPAVD E SF++EH EEE QF++ RCLIE+I+SAGA
Sbjct:   350 AFDERLQYIAEVCIFHSLAEDKIIFPAVDGEFSFSEEHDEEENQFNEFRCLIENIKSAGA 409

Query:   389 NS-STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPL 447
             +S S AEFYTKLCS AD IM +IQ+HF NEE+QVLPLAR++FS KRQ+ELLYQSLC+MPL
Sbjct:   410 SSTSAAEFYTKLCSHADQIMETIQRHFHNEEIQVLPLARKNFSFKRQQELLYQSLCIMPL 469

Query:   448 KLIECVLPWLVGSLSEEEARSFLQNIYMAA--SDSALITLFAGWACKGHSRNVCLSSSAI 505
             +LIE VLPWL  SL+E+EA++FL+N+   A  SD AL+TLF+GWACKG     CLS +  
Sbjct:   470 RLIERVLPWLTASLTEDEAKNFLKNLQAGAPKSDVALVTLFSGWACKGRKAGECLSPNGN 529

Query:   506 GCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLED 565
             G CP KTL+  KE+         +  C S + +     Q+      KRP KR   +  E 
Sbjct:   530 GLCPVKTLSNIKEVNLQSCNACASVPCTSRSTKSCCQHQD------KRPAKRTAVLSCEK 583

Query:   566 CDACSGAKSVNTPSSSRSNQSCCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX 624
                    +  N    S + +SCCVP                                   
Sbjct:   584 KTTPHSTEVANGCKPSGNGRSCCVPDLGVNNNCLELGSLPAAKAMRSSSLNSAAPALNSS 643

Query:   625 XXXWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFR 684
                WE D +S   G A RP+  IFKFHKAI KDLE+LD ESGKL DC+ TF+RQF GRF 
Sbjct:   644 LFIWEMDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFH 703

Query:   685 LLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE 744
             LLWG Y+AHSNAEDDI+FPALESKETL NVSHSYTLDHKQEEKLF DI S L+EL+ LHE
Sbjct:   704 LLWGFYKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHE 763

Query:   745 CLSTD-LTGDLTRNSL--ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELW 801
              L +D +  D+ +        D  +  +KYNE AT+LQGMCKSI++TLDQH+F EELELW
Sbjct:   764 KLQSDSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELELW 823

Query:   802 PLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMF 861
             PLFD+HFS++EQDKIVGRIIGTTGAEVLQSMLPWVTSAL+++EQN MMDTWKQATKNTMF
Sbjct:   824 PLFDKHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTMF 883

Query:   862 SEWLNEWWEGXXXXXXXXHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELE 921
              EWLNE W+G           TS+      +D  E LD S   FKPGW DIFRMNQNELE
Sbjct:   884 DEWLNECWKGSPDSSSTE---TSKPSPQKDNDHQEILDQSGELFKPGWKDIFRMNQNELE 940

Query:   922 AEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDA 981
             AEIRKV +DSTLDPRRK YL+QN  TSRWIA+QQK  +  ++ + NG+   GCSPSFRD 
Sbjct:   941 AEIRKVYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKEAETAV-NGDVELGCSPSFRDP 999

Query:   982 EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1041
             EKQ++GCEHYKRNCKLRAACC +LFTCRFCHDKVSDHSMDRK  TEM+CMRCLKVQPVGP
Sbjct:  1000 EKQIYGCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGP 1059

Query:  1042 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1101
             +CTT SC G  MAK+YC ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCL  
Sbjct:  1060 ICTTPSCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGM 1119

Query:  1102 KLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKS 1161
             KLV+HKC EK LETNCPICC+FLFTSS  VRALPCGH+MHS CFQAYTCSHY CPIC KS
Sbjct:  1120 KLVNHKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKS 1179

Query:  1162 LGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTR 1221
             LGDMAVYFGMLDALLA+E+LPEEY++RCQ+ILCNDC++KG+  FHWLYHKCG CGSYNTR
Sbjct:  1180 LGDMAVYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGSYNTR 1239

Query:  1222 VIKVESTNTYCSTSN 1236
             VIK E+    CSTS+
Sbjct:  1240 VIKSETIPPDCSTSS 1254
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0010106 "cellular response to iron ion starvation" evidence=IEP
TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001114
hypothetical protein (1224 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 1e-31
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 3e-27
pfam0549574 pfam05495, zf-CHY, CHY zinc finger 9e-26
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 4e-18
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 9e-11
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 1e-08
cd12109158 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL 2e-07
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 5e-06
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-04
cd0016245 cd00162, RING, RING-finger (Really Interesting New 5e-04
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 6e-04
smart0018440 smart00184, RING, Ring finger 6e-04
COG5592171 COG5592, COG5592, Uncharacterized conserved protei 0.001
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information 
 Score =  119 bits (301), Expect = 1e-31
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 46  IFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFP 105
           +    H+AI+ EL  L R A A A   GG  D   L ER+ F      HH  AE+E++FP
Sbjct: 2   LLKLEHRAIRRELGRLARLAGALAA--GGPDDARALAERFRFLATELHHHHTAEEELLFP 59

Query: 106 ALDIRVK--NIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQ 163
           AL  RV    +      EH     L  +L  LL + +  +     ELA+   AL+T++ +
Sbjct: 60  ALRERVPLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALRE 119

Query: 164 HMSKEEEQVFP 174
           H+ +EEE++FP
Sbjct: 120 HLDEEEEELFP 130

Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger Back     alignment and domain information
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|227879 COG5592, COG5592, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1237
KOG1940276 consensus Zn-finger protein [General function pred 100.0
PF1459961 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. 99.89
PF0549571 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc 99.8
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.18
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.16
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.13
COG4357105 Zinc finger domain containing protein (CHY type) [ 98.94
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.84
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.82
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.79
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.78
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.77
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.64
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.63
PHA02929238 N1R/p28-like protein; Provisional 98.55
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.5
COG3945189 Uncharacterized conserved protein [Function unknow 98.48
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.48
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.46
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.42
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.33
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.3
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.28
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.25
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.12
PF1463444 zf-RING_5: zinc-RING finger domain 98.09
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.04
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.03
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.02
COG2846221 Regulator of cell morphogenesis and NO signaling [ 98.0
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.99
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.98
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.92
PHA02926242 zinc finger-like protein; Provisional 97.9
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.81
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.78
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.69
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 97.67
COG2846221 Regulator of cell morphogenesis and NO signaling [ 97.62
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.58
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.57
COG3945189 Uncharacterized conserved protein [Function unknow 97.52
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.51
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.33
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 97.3
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.29
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.26
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.24
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.24
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.22
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.22
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.22
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.04
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.93
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.77
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.72
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.62
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.42
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.05
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 95.97
KOG1941518 consensus Acetylcholine receptor-associated protei 95.93
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 95.66
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 95.66
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 95.65
COG52191525 Uncharacterized conserved protein, contains RING Z 95.63
COG2461409 Uncharacterized conserved protein [Function unknow 95.61
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.38
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 95.0
KOG1940276 consensus Zn-finger protein [General function pred 94.88
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 94.25
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 94.0
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 93.74
KOG4445 368 consensus Uncharacterized conserved protein, conta 93.66
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 93.39
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 93.27
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 93.22
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 92.77
KOG03091081 consensus Conserved WD40 repeat-containing protein 92.74
KOG3039303 consensus Uncharacterized conserved protein [Funct 92.64
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 92.31
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 92.14
KOG0297 391 consensus TNF receptor-associated factor [Signal t 91.99
KOG4739 233 consensus Uncharacterized protein involved in syna 91.97
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 91.91
KOG2272332 consensus Focal adhesion protein PINCH-1, contains 91.82
KOG3002 299 consensus Zn finger protein [General function pred 91.72
COG5152259 Uncharacterized conserved protein, contains RING a 91.32
KOG2660 331 consensus Locus-specific chromosome binding protei 91.18
COG5175 480 MOT2 Transcriptional repressor [Transcription] 89.14
KOG1002 791 consensus Nucleotide excision repair protein RAD16 89.03
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 88.99
PF04641260 Rtf2: Rtf2 RING-finger 88.74
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 88.72
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 88.51
COG5592171 Uncharacterized conserved protein [Function unknow 88.31
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 88.05
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 87.85
PHA02862156 5L protein; Provisional 86.44
COG5592171 Uncharacterized conserved protein [Function unknow 86.41
COG2461409 Uncharacterized conserved protein [Function unknow 86.38
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 85.31
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 85.13
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 84.67
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 83.42
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 82.19
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 81.39
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 81.04
COG5236 493 Uncharacterized conserved protein, contains RING Z 80.85
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 80.25
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-62  Score=531.84  Aligned_cols=253  Identities=50%  Similarity=1.090  Sum_probs=240.8

Q ss_pred             CCCCcccccccccCcccccccccccccccCCcccCcccccccCCCCCccccccccccccccccccCCCCCCCccCCCCcc
Q 000886          974 CSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1053 (1237)
Q Consensus       974 ~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~v~C~~C~~~Q~~~~~C~~~~C~~~~~ 1053 (1237)
                      ..+++.|+...++||+||+|+|++++|||+++|+|++||++..+|.++|+.+.+|+|+.|+++||++++|.+  | +..+
T Consensus        21 ~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~~~~C~~C~~~q~~~~~c~~--c-~~~~   97 (276)
T KOG1940|consen   21 IHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVYELLCMKCRKIQPVGQICSN--C-HVEL   97 (276)
T ss_pred             cccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhhhhhhhhHHhhhhhhhcccc--c-hhhh
Confidence            346788999999999999999999999999999999999999999999999999999999999999999999  4 7789


Q ss_pred             ceEecccccCCCCC-CccccCCCCCccccCCCCCccccccCCccccccccc-ccccccccCCCCCCcccccccccCCCcc
Q 000886         1054 AKYYCGICKFFDDE-RVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATV 1131 (1237)
Q Consensus      1054 ~~y~C~~C~~~d~~-k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v 1131 (1237)
                      |+|||.+||||||+ ..||||++|||||+|+++  |||||++|+.|+++.+ +.|+|+|++++.|||||.|++|++...+
T Consensus        98 g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s~~~~  175 (276)
T KOG1940|consen   98 GEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFLSFEDA  175 (276)
T ss_pred             hhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhccccccC
Confidence            99999999999988 599999999999999875  9999999999999998 6699999999999999999999999999


Q ss_pred             eecCCCCccChhhHHHhhhcCCCCCCCCcccCChhhHHHhHHHHHhhcCCChhhhccCCceecCCCCCCCCCCceeeccc
Q 000886         1132 RALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHK 1211 (1237)
Q Consensus      1132 ~~LpCgH~fH~~Ci~~wl~~~~~CPiCr~sv~dm~~~~~~lD~~i~~~pmP~ey~~~~~~i~CnDC~~~s~~~~h~lg~k 1211 (1237)
                      ..++|||++|..|+.++...+|+||+|.+ ++||..+|+++|.+|+.+|||++|.+++++|+||||+.+++++|||||+|
T Consensus       176 ~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~~~l~~k  254 (276)
T KOG1940|consen  176 GVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNVKYHILYHK  254 (276)
T ss_pred             CccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCccceehhhhh
Confidence            99999999999999999988899999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccccCCCCcc
Q 000886         1212 CGFCGSYNTRVIKVESTNTYC 1232 (1237)
Q Consensus      1212 C~~C~SYNT~~~~~~~~~~~~ 1232 (1237)
                      |+.|+|||||+++.+.....|
T Consensus       255 c~~c~~~~~r~~~~~~~~~~~  275 (276)
T KOG1940|consen  255 CGKCGSYNTRMISDPSKYDPQ  275 (276)
T ss_pred             CCCcccceeeeccCCCccCCC
Confidence            999999999999855544443

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A Back     alignment and domain information
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
2k2c_A137 Solution Nmr Structure Of N-Terminal Domain Of Huma 1e-24
2dkt_A143 Solution Structure Of The Chy Zinc Finger Domain Of 2e-24
2k2d_A79 Solution Nmr Structure Of C-Terminal Domain Of Huma 2e-07
2ecm_A55 Solution Structure Of The Ring Domain Of The Ring F 4e-05
2jrj_A52 Solution Structure Of The Human Pirh2 Ring-H2 Domai 9e-05
2ect_A78 Solution Structure Of The Zinc Finger, C3hc4 Type ( 8e-04
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 982  EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1041
            E+   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ C K+Q    
Sbjct: 14   ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1042 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1101
             C    CS L   +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CLA 
Sbjct: 74   TCE--ECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1102 KLVD-HKC 1108
             L   HKC
Sbjct: 129  NLQGRHKC 136
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 Back     alignment and structure
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 Back     alignment and structure
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 Back     alignment and structure
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 Back     alignment and structure
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
2dkt_A143 Ring finger and CHY zinc finger domain- containing 6e-53
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 1e-52
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 2e-14
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 4e-14
2k2d_A79 Ring finger and CHY zinc finger domain- containing 3e-30
2ecm_A55 Ring finger and CHY zinc finger domain- containing 7e-18
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-14
3cax_A369 Uncharacterized protein PF0695; structural genomic 5e-09
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 7e-10
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 1e-06
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 2e-07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 4e-07
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 1e-06
2ect_A78 Ring finger protein 126; metal binding protein, st 2e-06
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 4e-06
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 1e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 5e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 7e-05
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 6e-04
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 Back     alignment and structure
 Score =  181 bits (459), Expect = 6e-53
 Identities = 62/144 (43%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 973  GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMR 1032
            G S   R+  +   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ 
Sbjct: 4    GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCIN 63

Query: 1033 CLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHC 1092
            C K+Q     C    C      +YYC IC  FD ++  YHC  C +CR+  G   DFFHC
Sbjct: 64   CEKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRI--GPKEDFFHC 118

Query: 1093 MTCNCCLAKKLVD-HKCREKGLET 1115
            + CN CL   L   HKC E G  +
Sbjct: 119  LKCNLCLTTNLRGKHKCIESGPSS 142
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1237
d2dkta256 g.93.1.1 (A:82-137) RING finger and CHY zinc finge 2e-23
d2dkta174 g.89.1.1 (A:8-81) RING finger and CHY zinc finger 1e-18
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 1e-05
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 8e-05
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 0.001
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 0.001
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.002
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.002
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.003
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.004
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1055 KYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVD-HKCRE 1110
            +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CL   L   HKC E
Sbjct: 2    EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1237
d2dkta256 RING finger and CHY zinc finger domain-containing 99.65
d2dkta174 RING finger and CHY zinc finger domain-containing 99.1
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.54
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.53
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.4
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.4
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.33
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.24
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.24
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.02
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.9
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.82
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.54
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.53
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.52
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.51
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.29
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.98
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.98
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.5e-17  Score=156.93  Aligned_cols=55  Identities=51%  Similarity=1.290  Sum_probs=52.6

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             31842444577799950247999854458988844202578653223444-3221234
Q 000886         1054 AKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCRE 1110 (1237)
Q Consensus      1054 ~~Y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~~HC~~C~~C~~~~l-~~H~C~e 1110 (1237)
                      |+|||+|||||||+|++|||++|||||||++  ++||||++||+|+++++ ++|+|+|
T Consensus         1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9657873775468887665999980023588--6643267254643754577852369
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure