Citrus Sinensis ID: 000895

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230-----
MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
ccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHcHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEccHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccEEEEccccccEEEccccccccccccccHHHHHHHHHHHcccccccccHcccccccccEHHHHHHHHcEccccccccEccccccEEEcccccccccEcccccccEEEEEccccccHHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEcccccccccEEEEccccccccccccc
maapfaegggggggvavmpgpvnpidastqsktclkhsalkspILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdinKLLERYHFFRAIYKHHcnaedevifpalDIRVKNIARTYslehegesvLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSipvnmmaeflpwlsssissdehQDMRKCLCKIIPKEKLLRQVIFAWMEgvkvsdksceDNLEHRCQRwfscacessrsskrKYVELSYdltdssmscpideIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHsiaedkvifpAVDVELSFAQEHAEEEIQFDKLRCLIESIQsagansstAEFYTKLCSQADLIMASIQKHFRneevqvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGwackghsrnvclsssaigccpakTLAASKELKedikqpfcactckssaDEKLMLVQedeaddekrpvkrgnsmlledcdacsgaksvntpsssrsnqsccvpglgvsssnlgSSLAAAKSlrslsfspsapslnsslfnwetdlssadigcasrpidnIFKFHKAIRKDLeyldgesgklndcnETFLRQFTGRFRLLWGLYRahsnaeddivfpalesketlsnvshsytldhkqEEKLFEDISSALSELTELHEClstdltgdltrnslescdqneTVRKYNEKATELQGMCKSIRVTLDQHVFREElelwplfdrhfsveEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNewwegppapaaaahkatsescsdvhesldhsdhtfkpgwnDIFRMNQNELEAEIRKvsrdstldpRRKAYLIQNLMTSRWIASQQKSLQARdseisngedlfgcspsfrdaekqvfgcehykrncklraaccgklftcrfchdkvsdhsmdrkATTEMMCMRclkvqpvgpvcttlscsglsmaKYYCGIckffddervvyhcpfcnlcrvgrglgvdffhcmtcncclakklvdhkcrekgletncpiccdflftssatvralpcghfmhsdcfqaytcshyicpicskslGDMAVYFGMLDALLASEQLPEEYRDRCQEILcndcdkkgsapfhwlyhkcgfcgsynTRVIKVEstntycstsnp
maapfaegggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWfscacessrsskrKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSagansstaEFYTKLCSQADLIMASIQKHFRNEEVQvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLvqedeaddekrpvkrgnsmlLEDCDACSGAKsvntpsssrsnqSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEyldgesgklndCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTdltgdltrnslescdqnetvRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIrkvsrdstldprRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEstntycstsnp
MAAPFAEgggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPglgvsssnlgsslaaakslrslsfspsapslnsslfnWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGppapaaaaHKATSESCSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
*********************************CLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN*********************************QVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSIS***HQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACES*****RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK*******************************************************************************************LFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPAL********************************ELTELHECLSTDLTG******************Y**KATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG*******************************PGWNDIFRM**********************KAYLIQNLMTSRWIA******************LFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTY******
****************************************KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWM***************************************************IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELS***********FDKLRCLIESIQSAGA**STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNV******************************************************************************************V***GVS********************************W*TDLSS****CASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE*****************CDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEW*****************************************************************KAYLIQNLMT****************************************CEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRV***************
***********GGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCA********RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQED********VKRGNSMLLEDCDAC******************CVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPP**********************HSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAS***********ISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEST*********
********************PVNPID***QSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGV********************************************MSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK************************************************RSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLS**************CDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG*************************SDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQK********************SF***EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1235 2.2.26 [Sep-21-2011]
O14099425 Uncharacterized RING fing yes no 0.241 0.701 0.364 1e-56
Q96PM5261 RING finger and CHY zinc yes no 0.189 0.896 0.441 2e-50
Q9CR50261 RING finger and CHY zinc yes no 0.193 0.915 0.428 1e-49
Q6IRP0312 RING finger protein 126-B N/A no 0.040 0.160 0.411 6e-05
Q6DIP3311 RING finger protein 126 O no no 0.038 0.154 0.450 7e-05
Q7T0Q3312 RING finger protein 126-A N/A no 0.038 0.153 0.450 0.0002
Q9D0C1305 E3 ubiquitin-protein liga no no 0.038 0.157 0.470 0.0008
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 Back     alignment and function desciption
 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 915  QNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSP 974
            Q+ +  +I ++   S L  +RKA L+Q ++ S ++  ++   +  D    +  DL     
Sbjct: 74   QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDL---EK 130

Query: 975  SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1034
            ++ D E+++ GC HY RNCK++   C + +TCR CH+   DH ++R A   M+CM C KV
Sbjct: 131  TYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKV 190

Query: 1035 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDE--RVVYHCPFCNLCRVGRGLGVDFFHCMT 1092
            QP    C    C    M +YYC  CK +DD+  +  YHC  C +CR+GRGLG D+FHC T
Sbjct: 191  QPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKT 247

Query: 1093 CNCCLAKKLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY 1151
            C  CL   + + H+C E+  + NCPIC +++F S   V  L C H +H  C + Y  ++Y
Sbjct: 248  CGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNY 307

Query: 1152 ICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCG 1211
             CP C K++ ++   F +LD  +  + +P  Y      I CNDC+ +    +H+L HKC 
Sbjct: 308  RCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCN 367

Query: 1212 FCGSYNT 1218
             C SYNT
Sbjct: 368  SCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 Back     alignment and function description
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 Back     alignment and function description
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 Back     alignment and function description
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1235
2241084451224 predicted protein [Populus trichocarpa] 0.978 0.986 0.817 0.0
2254240351237 PREDICTED: uncharacterized protein LOC10 0.988 0.987 0.788 0.0
2555721301306 zinc finger protein, putative [Ricinus c 0.973 0.920 0.792 0.0
3064080561233 TMV-associated RING finger protein [Nico 0.960 0.961 0.726 0.0
4494390891256 PREDICTED: uncharacterized protein LOC10 0.991 0.975 0.695 0.0
4494975691256 PREDICTED: uncharacterized protein LOC10 0.991 0.975 0.694 0.0
2254559841234 PREDICTED: uncharacterized protein LOC10 0.956 0.957 0.714 0.0
3565130681236 PREDICTED: uncharacterized protein LOC10 0.985 0.984 0.689 0.0
3565311941238 PREDICTED: uncharacterized protein LOC10 0.988 0.986 0.685 0.0
3565244291234 PREDICTED: uncharacterized protein LOC10 0.983 0.984 0.696 0.0
>gi|224108445|ref|XP_002314849.1| predicted protein [Populus trichocarpa] gi|222863889|gb|EEF01020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2045 bits (5298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1007/1232 (81%), Positives = 1083/1232 (87%), Gaps = 24/1232 (1%)

Query: 18   MPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGD 77
            M GPVNPID S  SKTCLK+SALKSPILIFLFFHKAI+SELD LHRAA+AFAT    GGD
Sbjct: 1    MAGPVNPIDPSAPSKTCLKNSALKSPILIFLFFHKAIRSELDGLHRAAIAFATT---GGD 57

Query: 78   INKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN 137
            I  LLERY+ FR+IYKHHCNAEDEVIFPALDIRVKN+ARTYSLEHEGESVLFDQLFELLN
Sbjct: 58   IKPLLERYYLFRSIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGESVLFDQLFELLN 117

Query: 138  SSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIP 197
            S+M+NEESYRRELAS TGALQTSI QHMSKEEEQVFPLLIEKFSFEEQASL WQFLCSIP
Sbjct: 118  SNMQNEESYRRELASRTGALQTSIDQHMSKEEEQVFPLLIEKFSFEEQASLAWQFLCSIP 177

Query: 198  VNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSD--KSCEDN 255
            VNMMAEFLPWLSSSISSDEHQDM KCLCKIIP+EKLLRQVIF+WM+G K+S+  KSCEDN
Sbjct: 178  VNMMAEFLPWLSSSISSDEHQDMHKCLCKIIPEEKLLRQVIFSWMKGAKLSETCKSCEDN 237

Query: 256  LEHRCQRWFS-----------CACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAI 304
             +  CQ   +           CACESSR  KRKY+EL+ D T S+   PIDEI+LWHNAI
Sbjct: 238  SKAWCQDSGAPTLGCQSMKGHCACESSRMGKRKYMELNCDATLSTEFHPIDEILLWHNAI 297

Query: 305  KRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQ 364
            KRELNDI EAAR IQ SGDFS+LS+FNKRLQFIAEVCIFHSIAEDK+IFPAVD ELSFAQ
Sbjct: 298  KRELNDITEAARSIQHSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKIIFPAVDAELSFAQ 357

Query: 365  EHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPL 424
            EHAEEE+QFDKLRCLIESIQ+AGA +S  +FYTKLCSQAD IM +IQKHF+NEEVQVLPL
Sbjct: 358  EHAEEEVQFDKLRCLIESIQNAGAYTSLTDFYTKLCSQADQIMDNIQKHFQNEEVQVLPL 417

Query: 425  ARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSAL 484
            AR+HFS KRQRELLYQSLCVMPLKLIECVLPWLVGSLSEE ARSFLQN+YMAAPASDSAL
Sbjct: 418  ARKHFSAKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEAARSFLQNMYMAAPASDSAL 477

Query: 485  ITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLML 544
            +TLF+GWACKG S+NVCLSSSAIGCCP + LA ++E   D KQ  C C+ +SS DEK   
Sbjct: 478  VTLFSGWACKGGSKNVCLSSSAIGCCPVRILAGTEE---DTKQQSCKCSPRSSVDEKSSF 534

Query: 545  VQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLG-S 603
            VQ D ADD +RP K GN +  ED + C  ++ V+T  SS SN+SCCVPGLGVSS+NLG S
Sbjct: 535  VQVDGADDCRRPGKCGNLLAQEDSNGCPSSEPVDTQKSSCSNKSCCVPGLGVSSNNLGIS 594

Query: 604  SLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYL 663
            SLAAAKSLRS SFSPSAPSLNSSLFNWE D S  +IGC+SRPIDNIF+FHKAIRKDLEYL
Sbjct: 595  SLAAAKSLRS-SFSPSAPSLNSSLFNWEMDTSPTNIGCSSRPIDNIFQFHKAIRKDLEYL 653

Query: 664  DGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLD 723
            D ESGKLN+CNET LRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETL NVSHSYTLD
Sbjct: 654  DVESGKLNECNETLLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLD 713

Query: 724  HKQEEKLFEDISSALSELTELHECL-STDLTGDLTRNSLESCDQNETVRKYNEKATELQG 782
            HKQEEKLFEDISSALSELT+L + L +T+   +L        D N TVR+YNE AT+LQG
Sbjct: 714  HKQEEKLFEDISSALSELTQLQDYLKNTNHADELIGKHANLSDCNYTVRQYNELATKLQG 773

Query: 783  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSAL 842
            MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVG+IIGTTGAEVLQSMLPWVTSAL
Sbjct: 774  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGQIIGTTGAEVLQSMLPWVTSAL 833

Query: 843  TQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCSDVHESLDHSDHT 902
            T EEQN MMDTWKQATKNTMFSEWLNEWWEG    AA  H  TSESC+D+HESLD SDHT
Sbjct: 834  TLEEQNRMMDTWKQATKNTMFSEWLNEWWEG--TFAATPHATTSESCTDLHESLDQSDHT 891

Query: 903  FKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSE 962
            FKPGW DIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIA+QQKS QAR  +
Sbjct: 892  FKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQARTGD 951

Query: 963  ISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKA 1022
             SNG DL GCSPSFR  EKQ FGCEHYKRNCKLRA CCGKLF CRFCHDKVSDHSMDRKA
Sbjct: 952  HSNGGDLLGCSPSFRGPEKQEFGCEHYKRNCKLRATCCGKLFACRFCHDKVSDHSMDRKA 1011

Query: 1023 TTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRG 1082
            T+EMMCMRCLK+QPVGPVCT++SC G SMAKYYC ICKFFDDER VYHCPFCNLCRVG G
Sbjct: 1012 TSEMMCMRCLKIQPVGPVCTSISCGGFSMAKYYCSICKFFDDERAVYHCPFCNLCRVGTG 1071

Query: 1083 LGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1142
            LG DFFHCM CNCCLA KL DHKCREKGLETNCPICCD +FTSSA+V+ALPCGHFMHS C
Sbjct: 1072 LGADFFHCMKCNCCLAMKLADHKCREKGLETNCPICCDDMFTSSASVKALPCGHFMHSTC 1131

Query: 1143 FQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAP 1202
            FQAYTCSHYICPICSKSLGDM+VYFGMLDALLASE+LPEEYRDRCQ+ILCNDCDKKG+AP
Sbjct: 1132 FQAYTCSHYICPICSKSLGDMSVYFGMLDALLASEELPEEYRDRCQDILCNDCDKKGTAP 1191

Query: 1203 FHWLYHKCGFCGSYNTRVIKVESTNTYCSTSN 1234
            FHWLYHKC FCGSYNTRVIKV+ST++ CSTSN
Sbjct: 1192 FHWLYHKCRFCGSYNTRVIKVDSTDSNCSTSN 1223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424035|ref|XP_002279535.1| PREDICTED: uncharacterized protein LOC100255880 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572130|ref|XP_002527005.1| zinc finger protein, putative [Ricinus communis] gi|223533640|gb|EEF35377.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|306408056|dbj|BAJ16529.1| TMV-associated RING finger protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513068|ref|XP_003525236.1| PREDICTED: uncharacterized protein LOC100801725 [Glycine max] Back     alignment and taxonomy information
>gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] Back     alignment and taxonomy information
>gi|356524429|ref|XP_003530831.1| PREDICTED: uncharacterized protein LOC100803002 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1235
TAIR|locus:20896781254 BTS "BRUTUS" [Arabidopsis thal 0.957 0.943 0.642 0.0
TAIR|locus:20271761259 AT1G74770 [Arabidopsis thalian 0.254 0.249 0.603 1.3e-235
TAIR|locus:20112661254 AT1G18910 [Arabidopsis thalian 0.250 0.246 0.608 1.3e-235
POMBASE|SPAC2F3.16425 SPAC2F3.16 "ubiquitin-protein 0.245 0.712 0.358 2.3e-62
ASPGD|ASPL0000053938 522 AN10185 [Emericella nidulans ( 0.198 0.469 0.438 1.6e-61
UNIPROTKB|J9NZR5259 RCHY1 "Uncharacterized protein 0.195 0.930 0.437 2.8e-57
TAIR|locus:2099212287 AT3G62970 [Arabidopsis thalian 0.208 0.898 0.425 2.6e-56
UNIPROTKB|Q96PM5261 RCHY1 "RING finger and CHY zin 0.185 0.877 0.446 4.2e-56
RGD|1359180261 Rchy1 "ring finger and CHY zin 0.185 0.877 0.446 1.4e-55
MGI|MGI:1915348261 Rchy1 "ring finger and CHY zin 0.185 0.877 0.442 3e-55
TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4074 (1439.2 bits), Expect = 0., P = 0.
 Identities = 779/1212 (64%), Positives = 913/1212 (75%)

Query:    42 SPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDE 101
             SPILIFLFFHKA+ SEL+ LHR A+ FAT  G   D+  L ERY F R+IYKHHCNAEDE
Sbjct:    53 SPILIFLFFHKAVCSELEALHRLALEFAT--GHHVDLRLLRERYRFLRSIYKHHCNAEDE 110

Query:   102 VIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSI 161
             VIF ALDIRVKN+A+TYSLEH+GES LFD LFELLNS+   +ESYRRELA  TGALQTS+
Sbjct:   111 VIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDESYRRELARSTGALQTSV 170

Query:   162 SQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMR 221
             SQH++KE++QVFPLLIEKF +EEQA +VW+FLCSIPVNM+A FLPW+SSSIS DE ++M+
Sbjct:   171 SQHLAKEQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISSSISVDESKEMQ 230

Query:   222 KCLCKIIPKEKLLRQVIFAWMEGVKVSDKSC--EDNLEHRCQRWFS-----------CAC 268
              CL KI+P EKLL+QVIF W+ G   +  SC  ED++   C    S           CAC
Sbjct:   231 TCLKKIVPGEKLLQQVIFTWLGGKSNTVASCRIEDSMFQCCLDSSSSMLPCKASREQCAC 290

Query:   269 ESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLS 328
             E S+  KRKY EL+ +   S    P+DEI LWH +I +E+ +IA+ ARKIQLSGDFSDLS
Sbjct:   291 EGSKIGKRKYPELT-NFGSSDTLHPVDEIKLWHKSINKEMKEIADEARKIQLSGDFSDLS 349

Query:   329 AFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGA 388
             AF++RLQ+IAEVCIFHS+AEDK+IFPAVD E SF++EH EEE QF++ RCLIE+I+SAGA
Sbjct:   350 AFDERLQYIAEVCIFHSLAEDKIIFPAVDGEFSFSEEHDEEENQFNEFRCLIENIKSAGA 409

Query:   389 NS-STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPL 447
             +S S AEFYTKLCS AD IM +IQ+HF NEE+QVLPLAR++FS KRQ+ELLYQSLC+MPL
Sbjct:   410 SSTSAAEFYTKLCSHADQIMETIQRHFHNEEIQVLPLARKNFSFKRQQELLYQSLCIMPL 469

Query:   448 KLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAI 507
             +LIE VLPWL  SL+E+EA++FL+N+   AP SD AL+TLF+GWACKG     CLS +  
Sbjct:   470 RLIERVLPWLTASLTEDEAKNFLKNLQAGAPKSDVALVTLFSGWACKGRKAGECLSPNGN 529

Query:   508 GCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLED 567
             G CP KTL+  KE+         +  C S + +     Q+      KRP KR   +  E 
Sbjct:   530 GLCPVKTLSNIKEVNLQSCNACASVPCTSRSTKSCCQHQD------KRPAKRTAVLSCEK 583

Query:   568 CDACSGAKSVNTPSSSRSNQSCCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX 626
                    +  N    S + +SCCVP                                   
Sbjct:   584 KTTPHSTEVANGCKPSGNGRSCCVPDLGVNNNCLELGSLPAAKAMRSSSLNSAAPALNSS 643

Query:   627 XXXWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFR 686
                WE D +S   G A RP+  IFKFHKAI KDLE+LD ESGKL DC+ TF+RQF GRF 
Sbjct:   644 LFIWEMDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFH 703

Query:   687 LLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE 746
             LLWG Y+AHSNAEDDI+FPALESKETL NVSHSYTLDHKQEEKLF DI S L+EL+ LHE
Sbjct:   704 LLWGFYKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHE 763

Query:   747 CLSTD-LTGDLTRNSL--ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELW 803
              L +D +  D+ +        D  +  +KYNE AT+LQGMCKSI++TLDQH+F EELELW
Sbjct:   764 KLQSDSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELELW 823

Query:   804 PLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMF 863
             PLFD+HFS++EQDKIVGRIIGTTGAEVLQSMLPWVTSAL+++EQN MMDTWKQATKNTMF
Sbjct:   824 PLFDKHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTMF 883

Query:   864 SEWLNEWWEGX-XXXXXXXHKATSESCSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEI 922
              EWLNE W+G          K + +  +D  E LD S   FKPGW DIFRMNQNELEAEI
Sbjct:   884 DEWLNECWKGSPDSSSTETSKPSPQKDNDHQEILDQSGELFKPGWKDIFRMNQNELEAEI 943

Query:   923 RKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQ 982
             RKV +DSTLDPRRK YL+QN  TSRWIA+QQK  +  ++ + NG+   GCSPSFRD EKQ
Sbjct:   944 RKVYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKEAETAV-NGDVELGCSPSFRDPEKQ 1002

Query:   983 VFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCT 1042
             ++GCEHYKRNCKLRAACC +LFTCRFCHDKVSDHSMDRK  TEM+CMRCLKVQPVGP+CT
Sbjct:  1003 IYGCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGPICT 1062

Query:  1043 TLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLV 1102
             T SC G  MAK+YC ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCL  KLV
Sbjct:  1063 TPSCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGMKLV 1122

Query:  1103 DHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1162
             +HKC EK LETNCPICC+FLFTSS  VRALPCGH+MHS CFQAYTCSHY CPIC KSLGD
Sbjct:  1123 NHKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKSLGD 1182

Query:  1163 MAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIK 1222
             MAVYFGMLDALLA+E+LPEEY++RCQ+ILCNDC++KG+  FHWLYHKCG CGSYNTRVIK
Sbjct:  1183 MAVYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGSYNTRVIK 1242

Query:  1223 VESTNTYCSTSN 1234
              E+    CSTS+
Sbjct:  1243 SETIPPDCSTSS 1254
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0010106 "cellular response to iron ion starvation" evidence=IEP
TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001114
hypothetical protein (1224 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1235
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 1e-31
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 3e-27
pfam0549574 pfam05495, zf-CHY, CHY zinc finger 9e-26
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 4e-18
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 9e-11
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 2e-08
cd12109158 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL 2e-07
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 5e-06
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-04
cd0016245 cd00162, RING, RING-finger (Really Interesting New 5e-04
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 6e-04
smart0018440 smart00184, RING, Ring finger 6e-04
COG5592171 COG5592, COG5592, Uncharacterized conserved protei 0.001
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information 
 Score =  119 bits (301), Expect = 1e-31
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 46  IFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFP 105
           +    H+AI+ EL  L R A A A   GG  D   L ER+ F      HH  AE+E++FP
Sbjct: 2   LLKLEHRAIRRELGRLARLAGALAA--GGPDDARALAERFRFLATELHHHHTAEEELLFP 59

Query: 106 ALDIRVK--NIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQ 163
           AL  RV    +      EH     L  +L  LL + +  +     ELA+   AL+T++ +
Sbjct: 60  ALRERVPLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALRE 119

Query: 164 HMSKEEEQVFP 174
           H+ +EEE++FP
Sbjct: 120 HLDEEEEELFP 130

Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger Back     alignment and domain information
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|227879 COG5592, COG5592, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1235
KOG1940276 consensus Zn-finger protein [General function pred 100.0
PF1459961 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. 99.9
PF0549571 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc 99.8
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.18
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.17
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.14
COG4357105 Zinc finger domain containing protein (CHY type) [ 98.89
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.85
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.85
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.84
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.8
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.8
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.69
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.6
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.56
PHA02929238 N1R/p28-like protein; Provisional 98.54
COG3945189 Uncharacterized conserved protein [Function unknow 98.51
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.5
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.46
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.43
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.41
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.38
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.3
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.22
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 98.2
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.12
COG2846221 Regulator of cell morphogenesis and NO signaling [ 98.1
PF1463444 zf-RING_5: zinc-RING finger domain 98.07
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.0
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.99
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.98
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.97
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.84
PHA02926242 zinc finger-like protein; Provisional 97.83
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.77
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.75
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.74
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 97.6
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.57
COG3945189 Uncharacterized conserved protein [Function unknow 97.56
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.55
COG2846221 Regulator of cell morphogenesis and NO signaling [ 97.52
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.46
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 97.46
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.34
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.34
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.28
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.18
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.18
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.15
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.1
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.05
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 96.93
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.87
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.6
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.5
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.37
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.34
KOG1941518 consensus Acetylcholine receptor-associated protei 95.98
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.96
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 95.58
COG2461409 Uncharacterized conserved protein [Function unknow 95.55
COG52191525 Uncharacterized conserved protein, contains RING Z 95.51
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 95.22
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 95.19
KOG1940276 consensus Zn-finger protein [General function pred 94.87
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 94.69
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 94.58
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 94.5
KOG4445 368 consensus Uncharacterized conserved protein, conta 94.38
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 94.3
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 93.66
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 93.62
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.59
KOG03091081 consensus Conserved WD40 repeat-containing protein 93.54
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 93.06
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 92.83
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 91.99
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 91.98
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 91.84
KOG4739 233 consensus Uncharacterized protein involved in syna 91.81
KOG3039303 consensus Uncharacterized conserved protein [Funct 91.64
KOG0297 391 consensus TNF receptor-associated factor [Signal t 91.58
KOG2272332 consensus Focal adhesion protein PINCH-1, contains 91.22
COG5152259 Uncharacterized conserved protein, contains RING a 90.99
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 90.83
KOG2660 331 consensus Locus-specific chromosome binding protei 90.44
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 88.55
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 87.77
COG5592171 Uncharacterized conserved protein [Function unknow 87.6
COG5175 480 MOT2 Transcriptional repressor [Transcription] 86.96
PF04641260 Rtf2: Rtf2 RING-finger 86.57
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 86.44
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 86.26
KOG1002 791 consensus Nucleotide excision repair protein RAD16 86.07
COG2461409 Uncharacterized conserved protein [Function unknow 85.6
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 84.99
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 84.62
COG5592171 Uncharacterized conserved protein [Function unknow 84.21
KOG3002 299 consensus Zn finger protein [General function pred 83.82
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 83.8
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 83.59
PHA02862156 5L protein; Provisional 83.22
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 82.29
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 81.86
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 81.6
PRK03824135 hypA hydrogenase nickel incorporation protein; Pro 81.06
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 81.01
PRK12380113 hydrogenase nickel incorporation protein HybF; Pro 80.82
TIGR02481126 hemeryth_dom hemerythrin-like metal-binding domain 80.61
PRK03681114 hypA hydrogenase nickel incorporation protein; Val 80.46
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-62  Score=536.23  Aligned_cols=273  Identities=48%  Similarity=1.014  Sum_probs=249.3

Q ss_pred             HHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccCccCcccccccccccccccCCcccCcccccccCCCCCcccccc
Q 000895          945 TSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATT 1024 (1235)
Q Consensus       945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~ 1024 (1235)
                      |+||++.|+.......       ......+++.|+...++||+||+|+|++++|||+++|+|++||++..+|.++|+.+.
T Consensus         1 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~   73 (276)
T KOG1940|consen    1 MSRLAADQSFLEEFAQ-------ALSSIHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVY   73 (276)
T ss_pred             CccchhhhhhhHHHHh-------hhhhcccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhh
Confidence            4566666655432222       112335678899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCCcCCCCCccceEecccccCcCCC-CccccCCCCCccccCCCCCccccccCCccccccccc-c
Q 000895         1025 EMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDE-RVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-V 1102 (1235)
Q Consensus      1025 ~v~C~~C~~~q~~~~~C~~~~C~~~~~a~y~C~iC~l~d~~-k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~l-~ 1102 (1235)
                      +++|+.|.++||++++|.+  | +..+|+|||.+|+||||+ ..||||+.|||||+|+++  |||||++|+.|+++.+ +
T Consensus        74 ~~~C~~C~~~q~~~~~c~~--c-~~~~g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~  148 (276)
T KOG1940|consen   74 ELLCMKCRKIQPVGQICSN--C-HVELGEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSN  148 (276)
T ss_pred             hhhhhhHHhhhhhhhcccc--c-hhhhhhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhccc
Confidence            9999999999999999999  4 778999999999999988 599999999999999875  9999999999999999 5


Q ss_pred             cccccCCCCCCCccccccccccCCCcceecCCCCccChhhHHhhhhCCCCCCCCCcCcCchhhhhhhHHHHHhhcCCChh
Q 000895         1103 DHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEE 1182 (1235)
Q Consensus      1103 ~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~e 1182 (1235)
                      .|+|+|+++..+||||.|++|++...+..++|||++|..|+.++...+|+||+|.+ ++||..+|+++|.+|+.+|||++
T Consensus       149 ~H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~  227 (276)
T KOG1940|consen  149 WHKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEE  227 (276)
T ss_pred             ccchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCch
Confidence            69999999999999999999999999999999999999999999988899999999 99999999999999999999999


Q ss_pred             hhccCCcEeccCCCCCCCCCceeeeccCCCCCCCccccccccCCCCcc
Q 000895         1183 YRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYC 1230 (1235)
Q Consensus      1183 y~~~~~~i~CnDC~~~s~~~~h~lg~kC~~C~SYNT~~~~~~~~~~~~ 1230 (1235)
                      |.+++++|+||||+.+++++|||||+||+.|+|||||+++.+.....|
T Consensus       228 y~~~~~~i~cndC~~~~~~k~~~l~~kc~~c~~~~~r~~~~~~~~~~~  275 (276)
T KOG1940|consen  228 YKNKTQDILCNDCGSGTNVKYHILYHKCGKCGSYNTRMISDPSKYDPQ  275 (276)
T ss_pred             hhchhheeeccCCCCCCccceehhhhhCCCcccceeeeccCCCccCCC
Confidence            999999999999999999999999999999999999999855444433

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A Back     alignment and domain information
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional Back     alignment and domain information
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain Back     alignment and domain information
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1235
2k2c_A137 Solution Nmr Structure Of N-Terminal Domain Of Huma 1e-24
2dkt_A143 Solution Structure Of The Chy Zinc Finger Domain Of 2e-24
2k2d_A79 Solution Nmr Structure Of C-Terminal Domain Of Huma 2e-07
2ecm_A55 Solution Structure Of The Ring Domain Of The Ring F 4e-05
2jrj_A52 Solution Structure Of The Human Pirh2 Ring-H2 Domai 9e-05
2ect_A78 Solution Structure Of The Zinc Finger, C3hc4 Type ( 8e-04
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 980  EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1039
            E+   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ C K+Q    
Sbjct: 14   ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1040 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1099
             C    CS L   +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CLA 
Sbjct: 74   TCE--ECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1100 KLVD-HKC 1106
             L   HKC
Sbjct: 129  NLQGRHKC 136
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 Back     alignment and structure
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 Back     alignment and structure
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 Back     alignment and structure
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 Back     alignment and structure
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1235
2dkt_A143 Ring finger and CHY zinc finger domain- containing 7e-53
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 1e-52
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 2e-14
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 4e-14
2k2d_A79 Ring finger and CHY zinc finger domain- containing 3e-30
2ecm_A55 Ring finger and CHY zinc finger domain- containing 7e-18
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-14
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-08
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 8e-10
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 1e-06
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 2e-07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 5e-07
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 1e-06
2ect_A78 Ring finger protein 126; metal binding protein, st 2e-06
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 4e-06
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 1e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 5e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 7e-05
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 6e-04
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 Back     alignment and structure
 Score =  181 bits (459), Expect = 7e-53
 Identities = 62/144 (43%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 971  GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMR 1030
            G S   R+  +   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ 
Sbjct: 4    GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCIN 63

Query: 1031 CLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHC 1090
            C K+Q     C    C      +YYC IC  FD ++  YHC  C +CR+  G   DFFHC
Sbjct: 64   CEKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRI--GPKEDFFHC 118

Query: 1091 MTCNCCLAKKLVD-HKCREKGLET 1113
            + CN CL   L   HKC E G  +
Sbjct: 119  LKCNLCLTTNLRGKHKCIESGPSS 142
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1235
d2dkta256 g.93.1.1 (A:82-137) RING finger and CHY zinc finge 2e-23
d2dkta174 g.89.1.1 (A:8-81) RING finger and CHY zinc finger 1e-18
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 1e-05
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 8e-05
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 0.001
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 0.001
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.002
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.002
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.003
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.004
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1053 KYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVD-HKCRE 1108
            +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CL   L   HKC E
Sbjct: 2    EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1235
d2dkta256 RING finger and CHY zinc finger domain-containing 99.68
d2dkta174 RING finger and CHY zinc finger domain-containing 99.15
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.55
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.55
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.43
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.41
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.34
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.24
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.04
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.91
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.9
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.61
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.59
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.51
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.48
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.32
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.95
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.73
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.1e-18  Score=159.60  Aligned_cols=55  Identities=51%  Similarity=1.290  Sum_probs=52.6

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             32852444576799950147999864458988855312588653223444-4333457
Q 000895         1052 AKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCRE 1108 (1235)
Q Consensus      1052 a~y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~fHC~~C~~C~~~~l-~~H~C~e 1108 (1235)
                      |+|||+|||||||||++|||++|||||||++  ++||||++|++|+++++ ++|+|+|
T Consensus         1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9657873775468887665999980023588--6643267254643754577852369
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure