Citrus Sinensis ID: 000917

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220-----

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPLGKGNNF

ccccHHHHHcccccHHHHHHHcccccccHHHHccccHHHHHHHHcccccccHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHcccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHcccccccccccccccccc

ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccccccccHHHHHccccccccHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEEccccccccccccccccccccHHHcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHccHcccHcccccHHHccccccccccccccccEEcccccccccccccccccccEcccccccccccccccccccHHccccccccccccccccccHHHHHHHcccccccEEcccccccccccccccccccccccccccEEcccccEEccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHEcccccccEHHHccccccccccccccccccccccHHccccccccccccccEEccccccccccccccccccccccEEEcccccccccEEHHccccccEEEEcccccccccccEEccccEEEEEcccEEEcccccccccHHHccccEEEccccccEEEEccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccccHccccccccccc

MFYSQFIlakkgplgTIWIAAHLERKLrknqvadtdigvsvdsilfpdvPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhsitlpetfdlddfelpdndifqgnyvdhhvstreqitlqdtmdgmaystsqfglderfgdgdasqmgldldedllldkgtaaghgvsdadpqgsvkptthweqDNISERMNEIseertvndganqlervgldaepieyaeapstpglvqepnlssgqKALAsydhfesedqnsnelmATESrvndlsnsdchngdghtadwplhkdsnhdtvqcmlpekngyhvRDAAVKQAESLGesvksmpfvpdgsegtinpldgskrfknlqnapgmlsgesqqvnsdktaaslnctnvtcdmqdlnpetcpgstnmpvsedRLADYQAsnkkkshndaevsdnaagsgslVVVDadihacpdakdpkmlnidvAHEETASVSinvlkpcsyhtsdphmsspghdnslaqnlqplgvdlhsserskmnqasvdvqgeecyltdvmqseksqisgpsvcgdiqedngtldepldnatasNNELKKLnnsitsdlpapekllsvpegllnkpndlivestpekevlagsggvdagnklnsgkkrsyteSTITVeslnssesfgvdrtkrnsefipddddllSSILVgrkssvlkmkptppvrevasrkraRSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIrkkapctgpEILMIQMQFLeddifnepiftgmsaeLTSVHCEihdlskisisetdkdhgsseiandigcsiapnvieggkqgskepvalrnngdtqpaetsiqteshqgidhqfgaqntdaqghinsdtDVVKTVqneplaelnemdvdrgnvevaeeascsvnhgfgtssqtdvasaevcnqptgdktntvdaSLLVDtvcltpeptvdaqpvevgtsvakmdnakgvedtevIDRNIENIVAVETeakgtdgvlveegkvgvsvengadvetdrsVLTDAvntqegvsletggyndlaaangdnsrlevrnedgplagdwgsngkdptsnhmfseepvidstnsvelggdtinvslddgksqvdlrspmddgrmeieevtignDTGLLLILCCFLACFLFCDIFlklnlpmkcfgrnylkslKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFclvpeklhfplgkgnnf

MFYSQFIlakkgplgTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGhgvsdadpqgsvkptthweqdNISERMNEIseertvndganQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKkkshndaevsdnaagSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKevlagsggvdagnklnsgkkrsytestitveslnssesfgvdrtkrnsefipddddllssilvgrkssvlkmkptppvrevasrkrarsasqtnalkrkvlmddtmvlhgdvirqqltntedirrirkkapctgpEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTpeptvdaqpvevgtsvakmdnakgvedtevidrNIENIVAVeteakgtdgvlveegkvgvsvengadvetdrsVLTDAVNtqegvsletggyndLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTInvslddgksqvDLRSPMDDGRMEIEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKlhfplgkgnnf

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGldldedllldKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPddddllssILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTGlllilccflacflfcdiflKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPLGKGNNF

**YSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL*******PYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAY**********************************************************************************************************************************************************************C**********************************************************************************************************************************LVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPC*************************************************Y***********************************************************************************************************************************************************************************KVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKIS***************DIGCSIA**********************************************************************************************************************TVDASLLVDTVCLTPEPTVDA**V*V***********GVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVE**************************************************************************************************************IEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPL******

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLP****TAPYHSITLPETFDLDDFELPDNDIFQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DTMVLHGDVIRQQL**************CT*PEIL**********IFNEPIFTGMSAELTSVHCEIHDLS**********************************************************************************************************************************************************************************AKGVEDTEVIDRNIENIVAV****************************************************************************W*****D*******SEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPLGK****

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDGSEGTINPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLAD****************DNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSY************DNSLAQNLQPLGVDLHSS***********VQGEECYLTDVMQ**********VCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKM*********************NALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISIS********SEIANDIGCSIAPNVIEGGKQGSKEPVALRN***************HQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPLGKGNNF

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDE******************************************************************************************************************************AD********HDTVQCMLPEKNGYHVR*AAV*****LGESVKSMPFVP********************************************************************************************************D*HACPDA*DPKMLNID*AHE*****SINVLKPCSYHTSDPH******************************************************************************************ITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKE*************************************************IPDDDDLLSSILVGRKSSVLKMKP*********************LKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIA***************************************************AQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCS*********Q****SAE*CN*P*****NTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTGLLLILCCFLACFLFCDIFLKLNLPMKCFGRNYLKSLKPLVWVLFYILLNQSYSLLMFESNGWLAFYIFLRFSFCLVPEKLHFPLGK****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1225	2.2.26 [Sep-21-2011]
Q61550		635	Double-strand-break repai	yes	no	0.171	0.330	0.401	2e-35
Q9FQ19		693	Sister chromatid cohesion	no	no	0.119	0.210	0.486	3e-35
O60216		631	Double-strand-break repai	yes	no	0.148	0.288	0.438	3e-35
Q3SWX9		630	Double-strand-break repai	yes	no	0.148	0.288	0.438	4e-35
O93310		629	Double-strand-break repai	N/A	no	0.133	0.259	0.470	9e-35
A2AU37		552	Double-strand-break repai	no	no	0.128	0.284	0.459	3e-33
Q9H4I0		556	Double-strand-break repai	no	no	0.128	0.282	0.459	4e-33
D2HSB3		554	Double-strand-break repai	no	no	0.128	0.283	0.459	1e-32
Q9FQ20		810	Sister chromatid cohesion	no	no	0.124	0.188	0.428	1e-27
P30776		628	Cohesin subunit rad21 OS=	yes	no	0.104	0.203	0.457	5e-26

>sp\|Q61550\|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3	Back alignment and function desciption

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFY+ F+L+K+GPL  IW+AAH ++KL K  V + ++  SV+SI+ P V +ALR S HLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIY RK  YL  DC+EA +KIK AFR   VDLP E   A Y++ITLPE F   D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
           LPD +DI        + S  E+IT+++ +  ++         FG+D+R    +G A +  
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178

Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
              D+D+L+   T+A + +   +P+ S          N++E+MN +  E    D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)

>sp\|Q9FQ19\|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2	Back alignment and function description

>sp\|O60216\|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2	Back alignment and function description

>sp\|Q3SWX9\|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1	Back alignment and function description

>sp\|O93310\|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1	Back alignment and function description

>sp\|A2AU37\|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2	Back alignment and function description

>sp\|Q9H4I0\|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3	Back alignment and function description

>sp\|D2HSB3\|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1	Back alignment and function description

>sp\|Q9FQ20\|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2	Back alignment and function description

>sp\|P30776\|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1225
255547434		1247	cohesin subunit rad21, putative [Ricinus	0.892	0.876	0.485	0.0
359495890		1335	PREDICTED: uncharacterized protein LOC10	0.854	0.784	0.462	0.0
296083395		1133	unnamed protein product [Vitis vinifera]	0.768	0.831	0.480	0.0
224101259		1208	predicted protein [Populus trichocarpa]	0.866	0.879	0.471	0.0
374095603		1336	cohesin subunit [Camellia sinensis]	0.874	0.801	0.426	0.0
356566961		1223	PREDICTED: uncharacterized protein LOC10	0.837	0.838	0.417	0.0
356530009		1247	PREDICTED: uncharacterized protein LOC10	0.844	0.829	0.416	0.0
449509197		892	PREDICTED: uncharacterized LOC101223080,	0.708	0.973	0.449	0.0
449470358		1147	PREDICTED: uncharacterized protein LOC10	0.708	0.756	0.449	0.0
357507871		1487	Double-strand-break repair protein rad21	0.660	0.544	0.433	1e-176

>gi\|255547434\|ref\|XP_002514774.1\| cohesin subunit rad21, putative [Ricinus communis] gi\|223545825\|gb\|EEF47328.1\| cohesin subunit rad21, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/1158 (48%), Positives = 725/1158 (62%), Gaps = 65/1158 (5%)

Query: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
            MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+VPIALRLSSHLL
Sbjct: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLL 60

Query: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
            LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121  LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDL 180
            LPDNDIFQGNY+DHHVSTREQITLQDTMDG  YSTSQFGLDERFGDGD SQ+GLDL+E +
Sbjct: 121  LPDNDIFQGNYIDHHVSTREQITLQDTMDGAVYSTSQFGLDERFGDGDTSQVGLDLEEVI 180

Query: 181  LLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE 240
            LL   +      +DA  Q SV+     +     ERM   SEE  +N   +++E +  + E
Sbjct: 181  LLIIMSIFSDCRNDA--QTSVELLEPSKTVASHERMTGTSEEMPLNGTRSKIEDLAANLE 238

Query: 241  PIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNG 300
             I+YA+APSTPGL++EPNLSS +  L   DH ESED N   L   E   N  S S  H+G
Sbjct: 239  VIDYAQAPSTPGLMEEPNLSSVKDCLVCDDHLESEDHNVRGLGGMEISKNAPSKSALHHG 298

Query: 301  DGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGESVKSMPFVPDG-SEGTI 359
            D    D  L    +HDT+  M  E++     D  + QA   GE + +      G ++ T+
Sbjct: 299  DD-ARDLSLVDHLSHDTIAYMPTEEHSRLSGDLEINQAGLEGELLSTAVTSEHGPADETV 357

Query: 360  NPLDGSKRFKNLQNAPGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPV 419
            +  D S + ++          +++ V+SD      +   +  D ++   ET     +  +
Sbjct: 358  SRQDESHQIED----------KNKVVSSDNGETVTSIDQINGDYEESLAETNDNKFSNKI 407

Query: 420  SEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEET 479
             E  L    A     S         +    +L  V+ +       +D + L   V +E+ 
Sbjct: 408  GECLLNGKVAPMPAHS---------SGLPTALETVNVEGQDGQGQEDSETLLDHVNNEQM 458

Query: 480  ASVSINVLKPCSYHTSDPHMSSPGHDNS-LAQNLQPLGVDLHSSERSKMNQA------SV 532
                I+VL PC+ H S P + S   D S L  +LQ + V   SSE  +  +       S 
Sbjct: 459  KPTCISVLLPCNSHLSQPDILSGEADTSVLVSDLQSVDVAPLSSETVQREEGLHTSGTST 518

Query: 533  DVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSD 592
             VQGEEC++TDV+QSE++QIS P++ G+ QED G  D  LDN  ++NN+ + L +  T++
Sbjct: 519  KVQGEECHVTDVVQSEENQISDPTLNGETQEDGGKHDVRLDNEISNNNQNENLTSPTTTE 578

Query: 593  LPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVE 652
            LPAPEKLLS+P+ LL+KP+DL+VE TP+KEV     G  AG ++ +GKKRS+ ES +TV+
Sbjct: 579  LPAPEKLLSIPQTLLDKPHDLLVE-TPDKEVQEEGDGSGAGIRI-TGKKRSFAESALTVQ 636

Query: 653  SLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSAS 712
            SLNS ESFGV R+KR  E IPDDDDLLSSILVGRKSS LKMKPTPP  EV S KRAR  S
Sbjct: 637  SLNSVESFGVTRSKRTVESIPDDDDLLSSILVGRKSSALKMKPTPPAPEVPSMKRARFTS 696

Query: 713  QTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFN 772
            + +ALKRKVLMDD+MVLHGD+IRQQLTNTEDIRR+RKKAPCT  EILMIQ QFLED+IF+
Sbjct: 697  RPSALKRKVLMDDSMVLHGDIIRQQLTNTEDIRRLRKKAPCTRTEILMIQRQFLEDEIFS 756

Query: 773  EPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSS-EIANDIGCSIAPNVIEGGKQGSK 831
            EP+ TGMSA LT +H E  D S I + E D ++ +S E+ ND   +      +GG +GS 
Sbjct: 757  EPVLTGMSAYLTRMHSEAFDWSGIKVCENDDNNMASLEVVNDEHSARQIVKQDGGMEGST 816

Query: 832  EPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVV--KTVQNEPLAE 889
            EPV  R + + Q +E SI  ++ Q  DH  G+ + D + H+N   D+V  +T  +E L E
Sbjct: 817  EPVGCRTDIEEQTSEVSINKDNQQVEDH-LGSYDIDNE-HMNGVVDIVGHRTSVHEHLGE 874

Query: 890  LNEMDVDRGNVEVAEEASCSVNH---GFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVD 946
             +EM+ D+ N EV++    ++NH   G  T SQ++ AS ++   P+     TVD S  VD
Sbjct: 875  TSEMENDKVNSEVSD----AINHSAPGLET-SQSEPASGDILEMPSA----TVDQS--VD 923

Query: 947  TVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEE 1006
            T  + P   +  Q +E    +  M N  G++ TEV+D   + I AVE E +  + +L+EE
Sbjct: 924  TPII-PSDEIHNQLIEDVAGLRDMSNDIGLDCTEVVDNCAKKIGAVEAELRTGEELLLEE 982

Query: 1007 GKVGVSVENGADVETDRSVLTDAVNTQ-EGVSLETGGYNDLAAANGDNSRLEVRN----- 1060
             KV  SVE G D + D S   D  +     VS E G + + ++ N D +  E+ N     
Sbjct: 983  SKVRASVEIGGDEQVDGSAPNDGADASLANVSSEAGSFVNFSSVNIDQAFEEIENYKHGV 1042

Query: 1061 --EDGPLAGD-WGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQ----VD 1113
              ++G L G+  G + KD TS+H+ SEE  I+ST ++ L GD  N S++DG +     VD
Sbjct: 1043 FSDNGGLGGNSMGIDDKDQTSDHLCSEEAKINSTYTIGLDGDFKNTSMNDGDNTVSQLVD 1102

Query: 1114 LRSPMDDGRMEIEEVTIG 1131
             +  MD      + VT G
Sbjct: 1103 QQDTMDTQNAPPDHVTTG 1120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495890\|ref\|XP_002265684.2\| PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296083395\|emb\|CBI23350.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224101259\|ref\|XP_002312205.1\| predicted protein [Populus trichocarpa] gi\|222852025\|gb\|EEE89572.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|374095603\|gb\|AEY85029.1\| cohesin subunit [Camellia sinensis]	Back alignment and taxonomy information

>gi\|356566961\|ref\|XP_003551693.1\| PREDICTED: uncharacterized protein LOC100803412 [Glycine max]	Back alignment and taxonomy information

>gi\|356530009\|ref\|XP_003533578.1\| PREDICTED: uncharacterized protein LOC100809967 [Glycine max]	Back alignment and taxonomy information

>gi\|449509197\|ref\|XP_004163522.1\| PREDICTED: uncharacterized LOC101223080, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449470358\|ref\|XP_004152884.1\| PREDICTED: uncharacterized protein LOC101223080 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357507871\|ref\|XP_003624224.1\| Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi\|355499239\|gb\|AES80442.1\| Double-strand-break repair protein rad21-like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1225
TAIR\|locus:2181457		1031	SYN4 "sister chromatid cohesio	0.233	0.277	0.667	7e-169
UNIPROTKB\|F1S874		469	RAD21L1 "Uncharacterized prote	0.128	0.334	0.465	6.4e-34
UNIPROTKB\|E5RFV8		225	RAD21 "Double-strand-break rep	0.133	0.724	0.470	2e-32
UNIPROTKB\|E5RIN7		228	RAD21 "Double-strand-break rep	0.133	0.714	0.470	2e-32
UNIPROTKB\|O60216		631	RAD21 "Double-strand-break rep	0.213	0.415	0.347	4.3e-32
TAIR\|locus:2097548		693	SYN3 "AT3G59550" [Arabidopsis	0.24	0.424	0.348	5.2e-32
UNIPROTKB\|Q3SWX9		630	RAD21 "Double-strand-break rep	0.213	0.415	0.347	7.2e-32
UNIPROTKB\|E2QRU9		631	RAD21 "Uncharacterized protein	0.213	0.415	0.347	7.4e-32
UNIPROTKB\|F1S1K0		631	LOC100738633 "Uncharacterized	0.213	0.415	0.347	7.4e-32
ZFIN\|ZDB-GENE-060503-223		637	rad21b "RAD21 homolog (S. pomb	0.204	0.394	0.368	1.4e-31

TAIR\|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 959 (342.6 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
 Identities = 195/292 (66%), Positives = 219/292 (75%)

Query:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
             MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
             LGVVRIYSRKVNYLFDDCSEALLK+KQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGXXXXXXX 180
             LPDN+IFQGNYVDHHVST+EQITLQDTMDG+ YSTSQFGLDERFGDGD SQ         
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query:   181 XXXKGTAAG--HGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLD 238
                K        GV   D    +          I + M  +SE   ++    Q+E + ++
Sbjct:   181 FQDKDVIGSDDEGVPGIDHNAYLDAAA----PGIKDSMEGVSEAMPMDFNEEQVEDLAMN 236

Query:   239 AEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN 290
              E IE A+AP TPGLV+ PN SS ++ +A  DH + ED N+ E + +   +N
Sbjct:   237 NEFIEDAQAPQTPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELN 288

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

UNIPROTKB\|F1S874 RAD21L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E5RFV8 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E5RIN7 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

TAIR\|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VIII0671	hypothetical protein (1209 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1225
pfam04825		110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	4e-50

>gnl\|CDD\|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein	Back alignment and domain information

 Score =  172 bits (437), Expect = 4e-50
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +L KKGPL T+W+AA LE+KL + Q+ + DI  S + IL P+ PIALRLS  LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFR-STAVDLPPEESTAPYHSITLP 111
            GVVRIYSRKV YL +DC+EAL ++K+AFR    +DLP  E  A  +++TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLP--ERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1225
KOG1213		614	consensus Sister chromatid cohesion complex Cohesi	100.0
PF04825		111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	100.0
KOG1213		614	consensus Sister chromatid cohesion complex Cohesi	92.81

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1.6e-44  Score=414.47  Aligned_cols=123  Identities=71%  Similarity=1.097  Sum_probs=120.8

Q ss_pred             CCcchhhhhccCChhhhHHhhhccCCCchhhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEecchhhHHHHHHH
Q 000917            1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE   80 (1225)
Q Consensus         1 MFYS~~LLSKKGPLAtIWLAATl~KKLSKKqIL~tDI~kSCeeIl~PevPLALRLSGqLLlGVVRIYSRKvkYLL~DCne   80 (1225)
                      |||||+||+||||||+|||||||+|||+|+||++|||+++|++|++|.+|||||||||||+||||||||||+|||+||++
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 000917           81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPD  123 (1225)
Q Consensus        81 aL~KIK~AFRs~~VDLP~e~~~A~~eaITLPE~fdLDD~eLPd  123 (1225)
                      +|.|||++||+++||+|....+.+..+|||||+|++|++++|+
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~  123 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD  123 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc
Confidence            9999999999999999999999999999999999999998885

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families	Back alignment and domain information

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1225
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 72.6 bits (177), Expect = 7e-13
 Identities = 90/673 (13%), Positives = 172/673 (25%), Gaps = 192/673 (28%)

Query: 19  IAAHLERKLRKN----QVADTDIGV----SVDSIL-FPDVPIALRLSSHLLLGVVRIYSR 69
           I +  E     N     V D    +     +D I+   D           L   +     
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQE 76

Query: 70  KVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQG 129
           ++   F    E +L+I   F  + +     E   P        +     +    + ++  
Sbjct: 77  EMVQKF---VEEVLRINYKFLMSPIK---TEQRQP--------SMMTRMYIEQRDRLYND 122

Query: 130 N--YVDHHVSTREQIT--------LQD----TMDGMAYSTSQFGLDERFGDGDASQMGLD 175
           N  +  ++VS  +           L+      +DG+             G G        
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------------GSG-------- 162

Query: 176 LDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERV 235
                   K   A         Q  +     W        +N +    +       L+++
Sbjct: 163 --------KTWVALDVCLSYKVQCKMDFKIFW--------LN-LKNCNSPETVLEMLQKL 205

Query: 236 GLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN----- 290
               +P                + SS  K         S       L+ ++   N     
Sbjct: 206 LYQIDP----------NWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 291 -DLSNSDCHNG-DGH------TADWPL--HKDSNHDTVQCMLPEKNGYHVRDAAVKQAES 340
            ++ N+   N  +        T    +     +   T   +          +      + 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 341 LGESVKSMPFVPDGSEG-TINPL----------DGSKRFKNLQNAPGMLSGESQQVNSDK 389
           L    + +P      E  T NP           DG   + N +            VN DK
Sbjct: 311 LDCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWK-----------HVNCDK 354

Query: 390 TA----ASLNCTNVTCDMQ----DLN--PETCPGSTNMPVSEDRLADYQASNKKKSHNDA 439
                 +SLN      + +     L+  P       +  +    L+           +D 
Sbjct: 355 LTTIIESSLNVLE-PAEYRKMFDRLSVFPP------SAHIPTILLSLIWF---DVIKSDV 404

Query: 440 EVSDNAAGSGSLVVVDAD-----IHACPDAKDPKMLNIDVAHEETASVSINVLK-PCSYH 493
            V  N     SLV          I +       K+ N    H       ++    P ++ 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKTFD 460

Query: 494 TSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDV--MQSEKSQ 551
           + D  +  P  D     ++   G  L       +            +L D   ++  K +
Sbjct: 461 SDD--LIPPYLDQYFYSHI---GHHL-----KNIEHPERMTLFRMVFL-DFRFLEQ-KIR 508

Query: 552 ISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPN 611
               +           L+            LK     I  + P  E+L++     L K  
Sbjct: 509 HDSTAWNAS----GSILNTLQQ--------LKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 612 DLIVESTPEKEVL 624
           + ++ S    ++L
Sbjct: 557 ENLICS-KYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00