Citrus Sinensis ID: 000944

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210---
MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV
cCEEEEEECccccEEEEEEEECccccccEEEEEEccEEEEEEEcccccEEEEEEEEEccEEEEEEEEECccccCEEEEEEEcccEEEEEEECccccEEEEEECccccccccccccccEEEEEcccccEEEEEcccccEEEEEEcccccHccccccccccccccEEEEEEEEccccccccEEEEEEEcccccccccccccccccccEEEEEEEcccccCEEEECcccccccccEEEEccccccccccEEEEEEcEEEEECcccccEEECccccccccccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEEcccEEEEEEEEECcccccccEEEEEcccEEEEEECcccccEEEECccccccccccccccccccccccccCEEcccccCEEEEEEcccccccccccEEcccccccccEEEEEECcccccCEEEEccccCEEEEEECcccccccEEEEEEccccccccEEEEEEccccEEEEEEccEEEEEccccccccccEEEEEECccccEEEEccccEEEEEccccEEECcccccccEEEEEEcccEEEEEEcccEEEEEEEcccccEEEEEEEEccccEEEEEccccccccccccEEEEEECcccEEEEECcccccCEEEEEEEccccccccEEEEEEEcccccccccccccEEEEEEEcccEEEEEEEcccccCCcccCEEECccccEEEEEEEEccccEEEEcccccEEEEECcccEEEECcccccccEECccccccccccEEEEccccEEEEEEcccccEEEEEEEccccccCEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccCEEEEEEEcccccCEEEEEEccccccEEEEEEEEEccccccEEEEEEEECccccccccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEEccCEEEEEccEEEEEEcccccEEcEEECcccccEEEEEEECccEEEEECccccEEEEEECcccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEccccccccccccccccccEEccccccccccccEEEEEEccccEEEcccccccccccccEEEEEEEEcEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccCECccHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcc
MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIG************METEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDV**********GKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV
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MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.probableQ15393
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.probableQ921M3
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.probableQ1LVE8

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4A0A, chain A
Confidence level:confident
Coverage over the Query: 2-376,399-442
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3ei3, chain Avery confident Alignment | Template Structure