Citrus Sinensis ID: 000944

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210---

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

cEEEEEEEEccccEEEEEEEEEccccccEEEEEEccEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEcccEEEEEEEEccccEEEEEEEccccccccccccccEEEEEcccccEEEEEcccccEEEEEEccccHHHcccccccccccccEEEEEEEEccccccccEEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccEEEEccccccccccEEEEEEcEEEEEEcccccEEEEccccccccccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEEcccEEEEEEEEEEcccccccEEEEEcccEEEEEEEcccccEEEEEccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccEEcccccccccEEEEEEEcccccEEEEEccccEEEEEEEEcccccccEEEEEEccccccccEEEEEEccccEEEEEEccEEEEEccccccccccEEEEEEEccccEEEEccccEEEEEccccEEEEcccccccEEEEEEcccEEEEEEcccEEEEEEEcccccEEEEEEEEccccEEEEEccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEEEccccccccEEEEEEEcccccccccccccEEEEEEEcccEEEEEEEcccccEEcccEEEEEccccEEEEEEEEccccEEEEcccccEEEEEEcccEEEEEcccccccEEEccccccccccEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEccccccccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEEccEEEEEEccEEEEEEcccccEEcEEEEcccccEEEEEEEEccEEEEEEccccEEEEEEEcccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEccccccccccccccccccEEccccccccccccEEEEEEccccEEEcccccccccccccEEEEEEEEcEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEccHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcc

ccEEEEEEcccccEEEEEEEccccccccEEEEEcccEEEEEEEcccccEEEEEEEcEEEEEEEHHHEccccccccEEEEEEcccEEEEEEEcccccEEEEEEcccccccccEEccccEEEEEcccccEEEEEEEccccEEEEEcccccccEEEccccccccccEEEEEEEEEEccccccEEEEEEEccccccccccHHHHHHcccEEEEEEHccccccEEccccccccccccEEEEcccccccccEEEEEEccEEEEEccccccEEEcccccccccccccEEEEEEEEEEccccEEEEEEcccccEEEEEEEEccccEEEEEEEEcccccHHHHHHHHcccEEEEEEcccccEEEEEccccccccccccccccccccccccccEEcccccccEEEEEccccccccEEEEEEEcccccccEEEEEEcccccccHHEEEccccEEEEEEccccccccEEEEEEcccccccccEEEEEEcccEEEEEEccEEEEEccccccccccEEEEEEcccccEEEEccccEEEEEccccEcccccccccEEEEEEEcccEEEEEEEccEEEEEEEcccccEEEEEEEEcccEEEEEEcccccccccccEEEEEEccccEEEEEEcccccccHHHHHHHccccccEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEEEEEccccEEEEEccccEEEEEcccEEEEEccccccHHcccccccHHccccEEEEEccEEEEEEEcccccEEEEEEEEccccccEEEEcccccEEEEEEEccccccHHcccHHHHHHccHHHHHHHccccHHHHHcccHHHccccccHHHcccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEccccccEEEEEEEccccEEcccccccccEEEEEEEEccccEEEEEEEEccccccHHHHHHcccEEEEEccEEEEEEccHHHHHHHHHcccccEEEEEEEEcccEEEEEccHcEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEccccccHHcccccccccHHHccccccccccHHHHHHHEcccHHHHHEcccEEccccccEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHcc

mylysltlqqptgiiaaingnfsgtktpEIVVARGKVLEllrpensgriETLVSTEIFGAIRSLAQFRltgsqkdyivvgsdsGRIVIleynpsknvfdkihqetfgksgcrrivpgqylavdpkgravmigacEKQKLVYVLNRDtaarltisspleahkshTIVYSICgidcgfdnpIFAAIEldyseadqdstGQAASEAQKNLTFYELDLGLnhvsrkwsepvdnganmlvtvpgggdgpsgvLVCAENFViyknqghpdvraviprradlpaeRGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIkyfdtipvtasMCVLKSGYLFaasefgnhaLYQFqaigadpdveassstlmeteegfqpvffqprglknlVRIEQVESLMPIMDMRIANLFEEEAPQIftlcgrgprsslrilrpglaVSEMAVsqlpgvpsaVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETveevsdsgfldttpslavsligddslmqvhpsgirhiredgrinewrtpgkrtIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKhemsgdvacldiasvpegrkrsrflavgsydntirilsldpddcmqilsvqsvssppesLLFLEVQAsvggedgadhpaslflnaglqngvlFRTVVDMVTGqlsdsrsrflglrppklfsVVVGGRAAMLClssrpwlgyihrgrflltplsyETLEYAasfssdqcVEGVVSVAGNALRVFTIERLgetfnetalplrytprrfvlqpkKKLMVIIETDQGALTAEEREAAKKECFEaagmgengngnmdqmengddenkydplsdeqygypkaesdkwvscirvldprsantTCLLELQDNEAAFSICTvnfhdkehgTLLAVGtakglqfwpkrnivAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGrllagigpvlrLYDLGKKRLLRKCenklfpntivsintyrdriyvgdiqesfhfckyrrdenqlyifaddsvprwltaahhidfdtmagadkfgniyfvrlpqdvsdeieedptggkikweqgklngapnkmEEIVQFHVGDVVTSLqkaslvpgggesvIYGTVMGSLGAMLafssrddvdfFSHLEMHmrqehpplcgrdhmayrsayfpvkdvidgdlceqfptLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLellrpensgrieTLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEynpsknvfdKIHQEtfgksgcrriVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTisspleahkSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYknqghpdvraVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGfqpvffqprglKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGirhiredgrinewrtpgkrtivkvgsnrLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDiasvpegrkrsrflavgsydNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSdsrsrflglrppKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIerlgetfnetalplrytprrfvlqpkkKLMVIIETDQGALTAEEREAAKKECFEaagmgengngnMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLlrkcenklfpntivsintyrdriYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEieedptggkikWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIadeldrtpgeilkkleeirnkiv

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFeaagmgengngnmdqmengddENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

**LYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDY*****************NLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGAD***************GFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQS******SLLFLEVQASVGGE*GADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQ********************************************************DKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQD***************************MEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIA**********************

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI*************METEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDV**********GKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSL*******GGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSE***********EAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIG*********STL**T*EGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVG*****DHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKIV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1213	2.2.26 [Sep-21-2011]
Q921M3		1217	Splicing factor 3B subuni	yes	no	0.987	0.984	0.588	0.0
Q15393		1217	Splicing factor 3B subuni	yes	no	0.987	0.984	0.588	0.0
A0JN52		1217	Splicing factor 3B subuni	yes	no	0.987	0.984	0.588	0.0
Q1LVE8		1217	Splicing factor 3B subuni	yes	no	0.987	0.984	0.586	0.0
Q5RBI5		1217	Splicing factor 3B subuni	yes	no	0.987	0.984	0.587	0.0
Q54SA7		1256	Probable splicing factor	yes	no	0.991	0.957	0.494	0.0
Q4WLI5		1225	Pre-mRNA-splicing factor	yes	no	0.971	0.961	0.511	0.0
Q5B1X8		1209	Pre-mRNA-splicing factor	yes	no	0.976	0.980	0.501	0.0
Q4PGM6		1221	Pre-mRNA-splicing factor	N/A	no	0.977	0.971	0.498	0.0
Q7RYR4		1209	Pre-mRNA-splicing factor	N/A	no	0.971	0.975	0.501	0.0

>sp\|Q921M3\|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1	Back alignment and function desciption

 Score = 1485 bits (3845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1227 (58%), Positives = 934/1227 (76%), Gaps = 29/1227 (2%)

Query: 1    MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
            M+LY+LTLQ+ TGI  AI+GNFSGTK  EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1    MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60

Query: 60   AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
             IRSL  FRLTG  KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61   VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120

Query: 120  LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
            LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121  LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180

Query: 180  IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
            +FA +E+DY EAD D TG+AA+  Q+ LTFYELDLGLNHV RK+SEP++   N L+TVPG
Sbjct: 181  MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240

Query: 240  GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
            G DGPSGVL+C+EN++ YKN G  PD+R  IPRR    D P ERG++ V +ATH+ K++F
Sbjct: 241  GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299

Query: 296  FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
            FFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LY
Sbjct: 300  FFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLY 359

Query: 356  QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
            Q   +G D D E   S+ M  EEG    FFQPR LKNLV +++++SL PI+  +IA+L  
Sbjct: 360  QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLAN 417

Query: 416  EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
            E+ PQ++  CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VS
Sbjct: 418  EDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVS 477

Query: 476  FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
            F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 478  FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWK 537

Query: 536  TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
            TPGK+TIVK   N+ QVVIAL+GGEL+YFE+D +GQL E  E+ EMS DV C+ +A+VP 
Sbjct: 538  TPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597

Query: 595  GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
            G +RSRFLAVG  DNT+RI+SLDP DC+Q LS+Q++ + PESL  +E+    GG +  D 
Sbjct: 598  GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGTEKQDE 653

Query: 655  PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
                     L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654  LGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713

Query: 709  CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
             +SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+  +E+LG  
Sbjct: 714  AMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAV 773

Query: 769  FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
            FN+ A PL+YTPR+FV+ P+   ++IIETD  A T    A+ ++   +E  EAAG  E  
Sbjct: 774  FNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833

Query: 825  NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
                +      +EN    L +  +G PKA + +W S IRV++P   NT  L++L+ NEAA
Sbjct: 834  LA-AEMAAAFLNEN----LPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888

Query: 885  FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
            FS+    F +      + VG AK L   P R++  G+++ Y+ V  G+ LE LHKT VE 
Sbjct: 889  FSVAVCRFSNTGEDWYVLVGVAKDLILSP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEE 947

Query: 945  IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
            +P A+  FQGR+L G+G +LR+YDLGKK+LLRKCENK   N I  I T   R+ V D+QE
Sbjct: 948  VPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQE 1007

Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
            SF + +Y+R+ENQL IFADD+ PRW+T A  +D+DT+AGADKFGNI  VRLP + +DE++
Sbjct: 1008 SFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVD 1067

Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
            EDPTG K  W++G LNGA  K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127

Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
             ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++  
Sbjct: 1128 ILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEP 1187

Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
            + Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 NKQKNVSEELDRTPPEVSKKLEDIRTR 1214

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Mus musculus (taxid: 10090)

>sp\|Q15393\|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	Back alignment and function description

>sp\|A0JN52\|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1	Back alignment and function description

>sp\|Q1LVE8\|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1	Back alignment and function description

>sp\|Q5RBI5\|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1	Back alignment and function description

>sp\|Q54SA7\|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1	Back alignment and function description

>sp\|Q4WLI5\|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3 SV=1	Back alignment and function description

>sp\|Q5B1X8\|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3 SV=2	Back alignment and function description

>sp\|Q4PGM6\|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1	Back alignment and function description

>sp\|Q7RYR4\|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rse-1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1213
449459948		1214	PREDICTED: splicing factor 3B subunit 3-	1.0	0.999	0.906	0.0
225448823		1214	PREDICTED: splicing factor 3B subunit 3-	1.0	0.999	0.915	0.0
255588145		1214	spliceosomal protein sap, putative [Rici	1.0	0.999	0.901	0.0
224100909		1213	predicted protein [Populus trichocarpa]	1.0	1.0	0.897	0.0
224109600		1213	predicted protein [Populus trichocarpa]	1.0	1.0	0.899	0.0
374095609		1212	spliceosomal-like protein [Camellia sine	0.998	0.999	0.897	0.0
356536504		1214	PREDICTED: splicing factor 3B subunit 3-	1.0	0.999	0.889	0.0
356576847		1214	PREDICTED: splicing factor 3B subunit 3-	1.0	0.999	0.885	0.0
18410222		1214	splicing factor 3B subunit 3 [Arabidopsi	1.0	0.999	0.873	0.0
357478269		1225	Splicing factor 3B subunit [Medicago tru	1.0	0.990	0.839	0.0

>gi\|449459948\|ref\|XP_004147708.1\| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus] gi\|449513493\|ref\|XP_004164340.1\| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 2313 bits (5993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1101/1214 (90%), Positives = 1172/1214 (96%), Gaps = 1/1214 (0%)

Query: 1    MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
            MYLYSLTLQ+ TGI++AINGNFSG KT EIVVARGKVL+L+RP++SG+I+TL+S EIFGA
Sbjct: 1    MYLYSLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA 60

Query: 61   IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
            IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYN  KNVFDKIHQETFGKSGCRRIVPGQYL
Sbjct: 61   IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYL 120

Query: 121  AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
            A+DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
Sbjct: 121  AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180

Query: 181  FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240
            FAAIELDYSEADQDSTG AASEAQK+LTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
Sbjct: 181  FAAIELDYSEADQDSTGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240

Query: 241  GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ 300
            GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAA H+QKT+FFFLLQ
Sbjct: 241  GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQ 300

Query: 301  TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI 360
            TEYGDIFKVTLEH+N+ V ELKIKYFDTIPVTASMCVLKSG+LFAASEFGNH+LYQFQAI
Sbjct: 301  TEYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAI 360

Query: 361  GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ 420
            G D DVE+SS+TLMETEEGFQPVFFQPR LKNL+RI+QVESLMPIMDM+I NLFEEE PQ
Sbjct: 361  GEDADVESSSATLMETEEGFQPVFFQPRRLKNLMRIDQVESLMPIMDMKIINLFEEETPQ 420

Query: 421  IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
            IFTLCGRGPRSSLRILRPGLA+SEMAVS+LPGVPSAVWTVKKN+NDEFDAYIVVSF NAT
Sbjct: 421  IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT 480

Query: 481  LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR 540
            LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHP+GIRHIREDGRINEWRTPGKR
Sbjct: 481  LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR 540

Query: 541  TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR 600
            TIVKVGSNRLQVVIALSGGELIYFEVDMTGQL+EVEKHEMSGDVACLDIA VPEGR+RSR
Sbjct: 541  TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR 600

Query: 601  FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660
            FLAVGSYDNTIRILSLDPDDCMQILSVQSVS+ PESLLFLEV ASVGGEDGADHPASLFL
Sbjct: 601  FLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGEDGADHPASLFL 660

Query: 661  NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH 720
            NA L +GVLFRTVVDMVTGQLSDSRSRFLGLR PKLFSVV+ GR A+LCLSSRPWLGYIH
Sbjct: 661  NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH 720

Query: 721  RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP 780
            +G FLLTPLSYETLEYA+SFSSDQC EGVV+VAGN LRVFTIERLGETFNET +PLRYTP
Sbjct: 721  QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTP 780

Query: 781  RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMEN-GDDENK 839
            R+FVLQP++KL+V+IE+DQGA TAEEREAAKKECFEAAG GENGNG MDQMEN GDDE+K
Sbjct: 781  RKFVLQPRRKLLVVIESDQGAFTAEEREAAKKECFEAAGAGENGNGTMDQMENGGDDEDK 840

Query: 840  YDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGT 899
             DPLSDE YGYPKAES+KWVSCIRVLDPRSA TTCLLELQDNEAAFS+CTVNFHDKE+GT
Sbjct: 841  DDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEYGT 900

Query: 900  LLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAG 959
            LLAVGTAKGLQF+PKR++VAGYIHIYRF+E+GKSLELLHKTQVEG+PLAL QFQGRLLAG
Sbjct: 901  LLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG 960

Query: 960  IGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019
            +G VLRLYDLGK+RLLRKCENKLFPNTIVSI TYRDRIYVGDIQESFH+CKYRRDENQLY
Sbjct: 961  LGSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY 1020

Query: 1020 IFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1079
            IFADDSVPRWLTA++H+DFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
Sbjct: 1021 IFADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1080

Query: 1080 NGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFS 1139
            NGAPNK+EEI+QFH+GDVVTSLQKASL+PGGGE ++YGTVMGSLGA+ AF+SRDDVDFFS
Sbjct: 1081 NGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFS 1140

Query: 1140 HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
            HLEMHMRQEHPPLCGRDHM YRSAYFPVKDVIDGDLCEQFP+L LD+QRKIADELDRTPG
Sbjct: 1141 HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPSLPLDMQRKIADELDRTPG 1200

Query: 1200 EILKKLEEIRNKIV 1213
            EILKKLEE+RNKI+
Sbjct: 1201 EILKKLEEVRNKII 1214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225448823\|ref\|XP_002282354.1\| PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255588145\|ref\|XP_002534515.1\| spliceosomal protein sap, putative [Ricinus communis] gi\|223525135\|gb\|EEF27867.1\| spliceosomal protein sap, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224100909\|ref\|XP_002312063.1\| predicted protein [Populus trichocarpa] gi\|222851883\|gb\|EEE89430.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224109600\|ref\|XP_002315251.1\| predicted protein [Populus trichocarpa] gi\|222864291\|gb\|EEF01422.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|374095609\|gb\|AEY85032.1\| spliceosomal-like protein [Camellia sinensis]	Back alignment and taxonomy information

>gi\|356536504\|ref\|XP_003536777.1\| PREDICTED: splicing factor 3B subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356576847\|ref\|XP_003556541.1\| PREDICTED: splicing factor 3B subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi|18410222|ref|NP_567015.1| splicing factor 3B subunit 3 [Arabidopsis thaliana] gi|18410226|ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] gi|7019653|emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] gi|7019655|emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gi|332645831|gb|AEE79352.1| splicing factor 3B subunit 3 [Arabidopsis thaliana] gi|332645833|gb|AEE79354.1| putative splicing factor [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357478269\|ref\|XP_003609420.1\| Splicing factor 3B subunit [Medicago truncatula] gi\|355510475\|gb\|AES91617.1\| Splicing factor 3B subunit [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1213
TAIR\|locus:2100616		1214	SAP130a "spliceosome-associate	1.0	0.999	0.858	0.0
TAIR\|locus:2100646		1214	SAP130b "spliceosome-associate	1.0	0.999	0.858	0.0
MGI\|MGI:1289341		1217	Sf3b3 "splicing factor 3b, sub	0.995	0.991	0.585	0.0
UNIPROTKB\|A0JN52		1217	SF3B3 "Splicing factor 3B subu	0.995	0.991	0.585	0.0
UNIPROTKB\|Q15393		1217	SF3B3 "Splicing factor 3B subu	0.995	0.991	0.585	0.0
UNIPROTKB\|E2RR33		1217	SF3B3 "Uncharacterized protein	0.995	0.991	0.585	0.0
ZFIN\|ZDB-GENE-040426-2901		1217	sf3b3 "splicing factor 3b, sub	0.994	0.990	0.584	0.0
UNIPROTKB\|F1P529		1228	SF3B3 "Uncharacterized protein	0.995	0.982	0.583	0.0
FB\|FBgn0035162		1227	CG13900 [Drosophila melanogast	0.994	0.982	0.565	0.0
WB\|WBGene00019323		1220	teg-4 [Caenorhabditis elegans	0.990	0.984	0.505	0.0

TAIR\|locus:2100616 SAP130a "spliceosome-associated protein 130 a" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5562 (1963.0 bits), Expect = 0., P = 0.
 Identities = 1042/1214 (85%), Positives = 1137/1214 (93%)

Query:     1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
             MYLYSLTLQQ TGI+ AINGNFSG KT EI VARGK+L+LLRP+ +G+I+T+ S E+FGA
Sbjct:     1 MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA 60

Query:    61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
             IRSLAQFRLTG+QKDYIVVGSDSGRIVILEYN  KNVFDK+HQETFGKSGCRRIVPGQY+
Sbjct:    61 IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYV 120

Query:   121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
             AVDPKGRAVMIGACEKQKLVYVLNRDT ARLTISSPLEAHKSHTI YS+CG+DCGFDNPI
Sbjct:   121 AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI 180

Query:   181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240
             FAAIELDYSEADQD TGQAASEAQK+LTFYELDLGLNHVSRKWS PVDNGANMLVTVPGG
Sbjct:   181 FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG 240

Query:   241 GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ 300
              DGPSGVLVCAENFVIY NQGHPDVRAVIPRR DLPAERGVL+VSAA H+QKT+FFFL+Q
Sbjct:   241 ADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQ 300

Query:   301 TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI 360
             TEYGD+FKVTL+H+ +HVSELK+KYFDTIPV +S+CVLK G+LF+ASEFGNH LYQFQAI
Sbjct:   301 TEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAI 360

Query:   361 GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ 420
             G +PDVE+SSS LMETEEGFQPVFFQPR LKNLVRI+QVESLMP+MDM++ N+FEEE PQ
Sbjct:   361 GEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQ 420

Query:   421 IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
             IF+LCGRGPRSSLRILRPGLA++EMAVSQLPG PSAVWTVKKNV+DEFDAYIVVSF NAT
Sbjct:   421 IFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT 480

Query:   481 LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR 540
             LVLSIGE VEEV+DSGFLDTTPSLAVSLIGDDSLMQVHP+GIRHIREDGRINEWRTPGKR
Sbjct:   481 LVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR 540

Query:   541 TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR 600
             +IVKVG NRLQVVIALSGGELIYFE DMTGQL+EVEKHEMSGDVACLDIA VPEGRKRSR
Sbjct:   541 SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSR 600

Query:   601 FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660
             FLAVGSYDNT+RILSLDPDDC+QILSVQSVSS PESLLFLEVQAS+GG+DGADHPA+LFL
Sbjct:   601 FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFL 660

Query:   661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH 720
             N+GLQNGVLFRTVVDMVTGQLSDSRSRFLGL+PPKLFS+ V GR+AMLCLSSRPWLGYIH
Sbjct:   661 NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIH 720

Query:   721 RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP 780
             RG F LTPLSYETLE+AA FSSDQC EGVVSVAG+ALR+F I+RLGETFNET +PLRYTP
Sbjct:   721 RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTP 780

Query:   781 RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXXXXX-ENK 839
             R+FVL PK+KL+VIIE+DQGA TAEEREAA+KECF                      E+K
Sbjct:   781 RKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDK 840

Query:   840 YDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGT 899
              DPLSDEQYGYPKAES+KWVSCIRVLDP++A TTCLLELQDNEAA+S+CTVNFHDKE+GT
Sbjct:   841 EDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGT 900

Query:   900 LLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAG 959
             LLAVGT KG+QFWPK+N+VAG+IHIYRFVE+GKSLELLHKTQVEG+PLALCQFQGRLLAG
Sbjct:   901 LLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAG 960

Query:   960 IGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019
             IGPVLRLYDLGKKRLLRKCENKLFPNTI+SI TYRDRIYVGDIQESFH+CKYRRDENQLY
Sbjct:   961 IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY 1020

Query:  1020 IFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1079
             IFADD VPRWLTA+HH+DFDTMAGADKFGN+YFVRLPQD+S+EIEEDPTGGKIKWEQGKL
Sbjct:  1021 IFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKL 1080

Query:  1080 NGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFS 1139
             NGAPNK++EIVQFHVGDVVT LQKAS++PGG ES++YGTVMGS+GA+ AF+SRDDVDFFS
Sbjct:  1081 NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS 1140

Query:  1140 HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
             HLEMHMRQE+PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTL +DLQRKIADELDRTP 
Sbjct:  1141 HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPA 1200

Query:  1200 EILKKLEEIRNKIV 1213
             EILKKLE+ RNKI+
Sbjct:  1201 EILKKLEDARNKII 1214

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009555 "pollen development" evidence=IMP

GO:0009846 "pollen germination" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR\|locus:2100646 SAP130b "spliceosome-associated protein 130 b" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1289341 Sf3b3 "splicing factor 3b, subunit 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2901 sf3b3 "splicing factor 3b, subunit 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0035162 CG13900 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00019323 teg-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q921M3	SF3B3_MOUSE	No assigned EC number	0.5884	0.9876	0.9843	yes	no
Q9UTT2	RSE1_SCHPO	No assigned EC number	0.4343	0.9653	0.9709	yes	no
Q54SA7	SF3B3_DICDI	No assigned EC number	0.4940	0.9917	0.9578	yes	no
P0CR22	RSE1_CRYNJ	No assigned EC number	0.4874	0.9777	0.9745	yes	no
Q5RBI5	SF3B3_PONAB	No assigned EC number	0.5876	0.9876	0.9843	yes	no
Q6BYK1	RSE1_DEBHA	No assigned EC number	0.3505	0.9694	0.9363	yes	no
Q4WLI5	RSE1_ASPFU	No assigned EC number	0.5110	0.9711	0.9616	yes	no
A0JN52	SF3B3_BOVIN	No assigned EC number	0.5884	0.9876	0.9843	yes	no
Q15393	SF3B3_HUMAN	No assigned EC number	0.5884	0.9876	0.9843	yes	no
Q7RYR4	RSE1_NEUCR	No assigned EC number	0.5016	0.9719	0.9751	N/A	no
Q1LVE8	SF3B3_DANRE	No assigned EC number	0.5867	0.9876	0.9843	yes	no
Q5B1X8	RSE1_EMENI	No assigned EC number	0.5016	0.9769	0.9801	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_VIII000172	hypothetical protein (1213 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00170116	hypothetical protein (1268 aa)	•	•	•	•	0.822
	eugene3.00440042	hypothetical protein (2357 aa)	•	•	•		0.620
	estExt_Genewise1_v1.C_LG_XIII3357	hypothetical protein (820 aa)		•	•	•	0.576

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1213
pfam03178		318	pfam03178, CPSF_A, CPSF A subunit region	1e-115
pfam10433		513	pfam10433, MMS1_N, Mono-functional DNA-alkylating	9e-70

>gnl\|CDD\|217409 pfam03178, CPSF_A, CPSF A subunit region	Back alignment and domain information

 Score =  359 bits (925), Expect = e-115
 Identities = 133/334 (39%), Positives = 194/334 (58%), Gaps = 33/334 (9%)

Query: 860  SCIRVLDPRSANTTCLLELQDNEAAFSICTVN-FHDKEHGTLLAVGTAKGLQFWPKRNIV 918
            SCIR++DP +      LEL++NEA  S+ +VN    +     L VGTA  L   P     
Sbjct: 2    SCIRLVDPITWEVIDTLELEENEAVLSVKSVNLEDSEGRKEYLVVGTAFDLGEDPAAR-- 59

Query: 919  AGYIHIYRFVEEG--KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR 976
            +G I+++  +E    + L+L+HKT+V+G   ALC+FQGRLLAG G  LR+YDLGK +LL 
Sbjct: 60   SGRIYVFEIIEPETNRKLKLVHKTEVKGAVTALCEFQGRLLAGQGQKLRVYDLGKDKLLP 119

Query: 977  KCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI 1036
            K         +VS+  + +RI VGD+ +S  F  Y  +  +L +FA D+ PRW+TAA  +
Sbjct: 120  KAFLDTPITYVVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDTQPRWVTAAEFL 179

Query: 1037 -DFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVG 1095
             D+DT+ GADKFGN++ +R   +  + ++ DP                 ++    +FH+G
Sbjct: 180  VDYDTILGADKFGNLHVLRYDPEAPESLDGDP-----------------RLLHRAEFHLG 222

Query: 1096 DVVTSLQKASLVPGGGES-------VIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQE 1148
            D+VTS QK SLVP  G +       ++YGT+ GS+G ++ F S ++     HL+  +R E
Sbjct: 223  DIVTSFQKGSLVPKTGGAESTSSPQILYGTLDGSIGLLVPFISEEEYRRLQHLQQQLRDE 282

Query: 1149 HPPLCGRDHMAYRSAYF---PVKDVIDGDLCEQF 1179
             P LCG D  A+RS Y    PVK+VIDGDL E+F
Sbjct: 283  LPHLCGLDPRAFRSYYSRSPPVKNVIDGDLLERF 316

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318

>gnl\|CDD\|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1213
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	100.0
KOG1898		1205	consensus Splicing factor 3b, subunit 3 [RNA proce	100.0
KOG1896		1366	consensus mRNA cleavage and polyadenylation factor	100.0
COG5161		1319	SFT1 Pre-mRNA cleavage and polyadenylation specifi	100.0
PF10433		504	MMS1_N: Mono-functional DNA-alkylating methyl meth	100.0
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	100.0
KOG2048		691	consensus WD40 repeat protein [General function pr	98.27
KOG0318		603	consensus WD40 repeat stress protein/actin interac	98.15
KOG0647		347	consensus mRNA export protein (contains WD40 repea	97.57
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	97.54
PRK11028		330	6-phosphogluconolactonase; Provisional	97.48
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	97.47
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	97.47
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.31
KOG2106		626	consensus Uncharacterized conserved protein, conta	97.25
KOG0318		603	consensus WD40 repeat stress protein/actin interac	97.24
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.21
KOG1539		910	consensus WD repeat protein [General function pred	97.14
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	97.1
PRK11028		330	6-phosphogluconolactonase; Provisional	97.01
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	96.95
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.77
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	96.74
KOG1274		933	consensus WD40 repeat protein [General function pr	96.67
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	96.59
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	96.49
KOG0282		503	consensus mRNA splicing factor [Function unknown]	96.31
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	96.14
KOG0647		347	consensus mRNA export protein (contains WD40 repea	96.12
KOG1539		910	consensus WD repeat protein [General function pred	96.11
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	96.08
PLN00181		793	protein SPA1-RELATED; Provisional	95.99
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	95.77
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.71
KOG0296		399	consensus Angio-associated migratory cell protein	95.65
KOG0315		311	consensus G-protein beta subunit-like protein (con	95.58
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.38
KOG2321		703	consensus WD40 repeat protein [General function pr	95.23
KOG2110		391	consensus Uncharacterized conserved protein, conta	95.19
KOG1273		405	consensus WD40 repeat protein [General function pr	95.13
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	95.1
KOG2111		346	consensus Uncharacterized conserved protein, conta	94.94
KOG0310		487	consensus Conserved WD40 repeat-containing protein	94.93
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	94.87
KOG2111		346	consensus Uncharacterized conserved protein, conta	94.81
KOG0283		712	consensus WD40 repeat-containing protein [Function	94.81
PLN00181		793	protein SPA1-RELATED; Provisional	94.53
KOG0263		707	consensus Transcription initiation factor TFIID, s	94.52
KOG0282		503	consensus mRNA splicing factor [Function unknown]	94.39
KOG2055		514	consensus WD40 repeat protein [General function pr	94.07
KOG0290		364	consensus Conserved WD40 repeat-containing protein	93.63
KOG1273		405	consensus WD40 repeat protein [General function pr	93.42
KOG0645		312	consensus WD40 repeat protein [General function pr	93.31
KOG2106		626	consensus Uncharacterized conserved protein, conta	93.05
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	93.0
KOG2055		514	consensus WD40 repeat protein [General function pr	92.66
KOG0279		315	consensus G protein beta subunit-like protein [Sig	92.27
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	92.27
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	92.1
PTZ00421		493	coronin; Provisional	91.86
KOG0646		476	consensus WD40 repeat protein [General function pr	91.66
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	91.66
PF14727		418	PHTB1_N: PTHB1 N-terminus	91.2
KOG0310		487	consensus Conserved WD40 repeat-containing protein	90.82
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	90.26
KOG1407		313	consensus WD40 repeat protein [Function unknown]	90.22
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	90.17
KOG0294		362	consensus WD40 repeat-containing protein [Function	89.87
PF14727		418	PHTB1_N: PTHB1 N-terminus	89.64
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	89.44
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	88.79
KOG0315		311	consensus G-protein beta subunit-like protein (con	88.69
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	88.44
KOG3881		412	consensus Uncharacterized conserved protein [Funct	88.23
KOG0278		334	consensus Serine/threonine kinase receptor-associa	88.12
KOG2110		391	consensus Uncharacterized conserved protein, conta	87.97
KOG0283		712	consensus WD40 repeat-containing protein [Function	87.87
KOG0266		456	consensus WD40 repeat-containing protein [General	87.55
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	87.22
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	86.49
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	86.29
KOG2321		703	consensus WD40 repeat protein [General function pr	86.21
KOG0316		307	consensus Conserved WD40 repeat-containing protein	86.13
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	85.9
KOG0646		476	consensus WD40 repeat protein [General function pr	85.5
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	85.1
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	84.82
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	84.6
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	84.02
KOG2048		691	consensus WD40 repeat protein [General function pr	83.75
KOG1274		933	consensus WD40 repeat protein [General function pr	83.74
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	83.43
KOG0289		506	consensus mRNA splicing factor [General function p	82.95
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	82.94
KOG0296		399	consensus Angio-associated migratory cell protein	82.76
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	82.62
KOG2096		420	consensus WD40 repeat protein [General function pr	82.48
KOG0266		456	consensus WD40 repeat-containing protein [General	82.3
KOG0278		334	consensus Serine/threonine kinase receptor-associa	81.97
KOG0772		641	consensus Uncharacterized conserved protein, conta	81.45
PTZ00420		568	coronin; Provisional	81.27
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	80.43
KOG0640		430	consensus mRNA cleavage stimulating factor complex	80.32
KOG0263		707	consensus Transcription initiation factor TFIID, s	80.08
KOG0649		325	consensus WD40 repeat protein [General function pr	80.06
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.04

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=5.6e-171  Score=1470.78  Aligned_cols=1072  Identities=34%  Similarity=0.521  Sum_probs=956.2

Q ss_pred             CeEEEEEeeCCCceeEEEEEEecCCCCceEEEEeCCEEEEEeecCCCCeEEEEEEEeeeeeeEeeEEeeCCCCeeEEEEE
Q 000944            1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVG   80 (1213)
Q Consensus         1 m~~y~~t~~~pt~v~~~v~~~f~~~~~~~LVv~k~~~Levy~i~~~g~L~~v~~~~l~g~I~~i~~~r~~~~~~d~L~v~   80 (1213)
                      |+.|+.|+++||+|.+|+.|||+++...||+|||+|.||+|.++++| |+.+.+.|+||+|..|+.+||++.++|+|+|.
T Consensus         1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~   79 (1096)
T KOG1897|consen    1 SMNYVVTAQKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFRPPGSDKDYLFVA   79 (1096)
T ss_pred             CeeEEEEecCCceEeEEEeecccCccceeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeecCCCCCcceEEEE
Confidence            78999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             eccceEEEEEEeCCCCcEeEEee-eeccccCcccccCCceEEECCCCCEEEEEecccceEEEEEecCCCCc-eeeecccc
Q 000944           81 SDSGRIVILEYNPSKNVFDKIHQ-ETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAAR-LTISSPLE  158 (1213)
Q Consensus        81 ~~~~~l~il~~d~~~~~~~tis~-~~~~~~g~~~~~~~~~l~VDP~~r~ia~~~~~~~~~v~~~~~~~~~~-~~~~~p~e  158 (1213)
                      |+++++++|+||....+.++..+ ...+|.| |+..+|++++|||.+|.|++++|+|.+.|+|+.+++.-. -.....+.
T Consensus        80 t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn  158 (1096)
T KOG1897|consen   80 TDSYRYFILEWDEESIQVVTRAHGDVSDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFN  158 (1096)
T ss_pred             ECcceEEEEEEccccceEEEEeccccccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccc
Confidence            99999999999985445555544 3456666 888999999999999999999999999999997652100 00000000


Q ss_pred             ccccccEEEEeeeeccCCCCcEEEEEEeeccccccCcchhccccccceEEEEEEEcCCceeee-eeeeccCCCcceEEec
Q 000944          159 AHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSR-KWSEPVDNGANMLVTV  237 (1213)
Q Consensus       159 ~~~~~~~i~~~~fl~~~~~~p~~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~~~~~lipl  237 (1213)
                      .....-+++||+||+ +..+|++|+||.+   .           ..+|+++|++|+....+.+ .|+.++..++..+||+
T Consensus       159 ~rfdel~v~Di~fly-~~s~pt~~vly~D---s-----------~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~li~V  223 (1096)
T KOG1897|consen  159 VRFDELNVYDIKFLY-GCSDPTLAVLYKD---S-----------DGRHVKTYELNLRDKEFVKGPWSNNVDNGASMLIPV  223 (1096)
T ss_pred             cccCcceEEEEEEEc-CCCCCceEEEEEc---C-----------CCcEEEEEEeccchhhccccccccccccCCceeeec
Confidence            001123799999998 7789999999543   2           1689999999998665544 4998899999999999


Q ss_pred             CCCCCCCCeEEEEeeceEEEEeCCCCceeeecCCCCCCCCCcceEEEEEEEEEecCceEEEEEeCCCCEEEEEEEeCCce
Q 000944          238 PGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEH  317 (1213)
Q Consensus       238 p~~~~~~~GvLv~~~~~i~y~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~~  317 (1213)
                      |.+.   |||||+|++.|.|.+++....-  .|..     ..+..++||..+.. +..+||++|++|+||++.+...+.+
T Consensus       224 P~~~---gGvlV~ge~~I~Y~~~~~~~ai--~p~~-----~~~~t~~~~~~v~~-~~~~yLl~d~~G~Lf~l~l~~~~e~  292 (1096)
T KOG1897|consen  224 PSPI---GGVLVIGEEFIVYMSGDNFVAI--APLT-----AEQSTIVCYGRVDL-QGSRYLLGDEDGMLFKLLLSHTGET  292 (1096)
T ss_pred             CCCC---ceEEEEeeeEEEEeeCCceeEe--cccc-----cCCceEEEcccccC-CccEEEEecCCCcEEEEEeeccccc
Confidence            9999   9999999999999998643211  1221     12567899998764 5578999999999999999988887


Q ss_pred             eee--eEEEEeCCCCcceeEEEEcCCeEEEEeeeCCeEEEEEeecCCCCCcccccCCccccccCCCceeeccCCcccEEE
Q 000944          318 VSE--LKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVR  395 (1213)
Q Consensus       318 v~~--l~i~~l~~~~~~s~l~~l~~~~lFvgS~~gds~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  395 (1213)
                      +.+  ++++++|++++++||++|++|+||+||++|||+|+++....+.                          ..+..+
T Consensus       293 ~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~--------------------------gsy~~i  346 (1096)
T KOG1897|consen  293 VSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDV--------------------------GSYVVI  346 (1096)
T ss_pred             ccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCC--------------------------Cchhhh
Confidence            777  8999999999999999999999999999999999999764311                          124678


Q ss_pred             EEEeccCCcccceEEeccCCCCCCcEEEEEecCCCCeEEEEccCCcceEEEEecCCCCcceEEEeeeCCCCCCceEEEEE
Q 000944          396 IEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS  475 (1213)
Q Consensus       396 ~d~~~n~gPI~D~~~~~~~~~~~~~lv~~sG~g~~GsL~~lr~gi~~~~~~~~~l~~~~~~iw~l~~~~~~~~~~~lvlS  475 (1213)
                      +++++|+|||.||++.+...|+++++++|||++|+|+||++|+||++++++++++||+ +++|+++....++++.||++|
T Consensus       347 let~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gi-kg~w~lk~~v~~~~d~ylvls  425 (1096)
T KOG1897|consen  347 LETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGI-KGMWSLKSMVDENYDNYLVLS  425 (1096)
T ss_pred             hhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCc-cceeEeeccccccCCcEEEEE
Confidence            9999999999999999988788999999999999999999999999999999999995 999999987778899999999


Q ss_pred             ecCceeEEEeccceeeecCCCccCCCCeEEEEeecCCeEEEEeCCcEEEEeCCCceeeeeCCCCccEEEEEecCCEEEEE
Q 000944          476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIA  555 (1213)
Q Consensus       476 ~~~~T~vl~~~~~~~e~~~~gf~~~~~Tl~a~~~~~~~ivQVT~~~i~l~~~~~~~~~~~~~~~~~I~~as~~~~~v~v~  555 (1213)
                      |.++|++|.++++++|..+.||.++++||+|+.++++.++|||+++||+++...+..+|.+|.+..|..|+.+..+|+|+
T Consensus       426 f~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA  505 (1096)
T KOG1897|consen  426 FISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVA  505 (1096)
T ss_pred             eccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEe
Confidence            99999999998889999999999999999999998888999999999999988899999999999999999999999999


Q ss_pred             EeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCc
Q 000944          556 LSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPE  635 (1213)
Q Consensus       556 ~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~  635 (1213)
                      ..++.+++++++..+ |.+..+++++.||+|+++.+.+++...+.+++||+|+..+.++...||..+...+....+..|+
T Consensus       506 ~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR  584 (1096)
T KOG1897|consen  506 GGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR  584 (1096)
T ss_pred             cCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence            877899999888655 8999999999999999999998777788999999997766666666996666666666778899


Q ss_pred             eeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEEEEecCccE
Q 000944          636 SLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPW  715 (1213)
Q Consensus       636 Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~g~~p~  715 (1213)
                      |+.+..++.           ...||+|+++||.|++|.++..+|++++.|+.++|++|+.|+++...+.+++|||++|||
T Consensus       585 SIl~~~~e~-----------d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~  653 (1096)
T KOG1897|consen  585 SILLTTFEG-----------DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPT  653 (1096)
T ss_pred             heeeEEeec-----------cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCE
Confidence            999988763           378999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEecCccccceeeccccCCCCceEEEEeCCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEE
Q 000944          716 LGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVII  795 (1213)
Q Consensus       716 ~i~~~~~~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~  795 (1213)
                      ++|+.++++.|+|++.+.+..+|||++.++++++++++++.|+|++++++ +++++|++|++++||||+||+.+.+|.|.
T Consensus       654 viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~i-qkl~irtvpl~~~prrI~~q~~sl~~~v~  732 (1096)
T KOG1897|consen  654 VIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEI-QKLHIRTVPLGESPRRICYQESSLTFGVL  732 (1096)
T ss_pred             EEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecch-hhcceeeecCCCChhheEecccceEEEEE
Confidence            99999999999999999999999999999999999999999999999999 89999999999999999999988889998


Q ss_pred             EccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEE
Q 000944          796 ETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCL  875 (1213)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~  875 (1213)
                      +.+.+...+                                             +  .+++.|.++++++|++|+++++.
T Consensus       733 s~r~e~~~~---------------------------------------------~--~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  733 SNRIESSAE---------------------------------------------Y--YGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             ecccccchh---------------------------------------------h--cCCcceEEEEEEecCCceeEEee
Confidence            854322110                                             0  01246789999999999999999


Q ss_pred             EEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCe
Q 000944          876 LELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGR  955 (1213)
Q Consensus       876 ~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~  955 (1213)
                      ++|+++|.+.|+++++|.+ +...|++|||++.++  +|.+|..|||++|++.+ +.+|++++++.++|+|++++.|||+
T Consensus       766 hef~~~E~~~Si~s~~~~~-d~~t~~vVGT~~v~P--de~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~fngk  841 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTD-DPNTYYVVGTGLVYP--DENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVEFNGK  841 (1096)
T ss_pred             ccccccceeeeeeeeeecC-CCceEEEEEEEeecc--CCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhhhCCe
Confidence            9999999999999999987 447999999999999  79999999999999999 4599999999999999999999999


Q ss_pred             EEEEeCCeEEEEecCCce-eeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEE
Q 000944          956 LLAGIGPVLRLYDLGKKR-LLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAH 1034 (1213)
Q Consensus       956 ll~~~g~~l~i~~~~~~~-l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~ 1034 (1213)
                      |+||+|++|.+|+|..++ |...|... .|+++.+|++.+|+|+|||+|+|+++++|+.+++.|+++|||++|+|+++++
T Consensus       842 llA~In~~vrLye~t~~~eLr~e~~~~-~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtave  920 (1096)
T KOG1897|consen  842 LLAGINQSVRLYEWTTERELRIECNIS-NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVE  920 (1096)
T ss_pred             EEEecCcEEEEEEccccceehhhhccc-CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEE
Confidence            999999999999999774 55556665 6889999999999999999999999999999999999999999999999999


Q ss_pred             eecCCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeecCceeceEEEeeecCC-----
Q 000944         1035 HIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPG----- 1109 (1213)
Q Consensus      1035 ~ld~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~lg~~v~~~~~~~~~~~----- 1109 (1213)
                      ++|+++++++|++||+++++++.+.+++  +                ++++|...+.||+|+.|++|+++++.+.     
T Consensus       921 il~~d~ylgae~~gNlf~v~~d~~~~td--~----------------eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~  982 (1096)
T KOG1897|consen  921 ILDDDTYLGAENSGNLFTVRKDSDATTD--E----------------ERQILEEVGKFHLGELVNKFRHGSLVMQLGDSM  982 (1096)
T ss_pred             EecCceEEeecccccEEEEEecCCCCch--h----------------hhhcccceeeEEeccceeeeeecceEeeccccc
Confidence            9999999999999999999999877654  2                2689999999999999999999987653     


Q ss_pred             --CccEEEEEecccceEEEEecCChhHHHHHHHHHHHHHhcCCCCcCCCccccccccC-----CCCceeechhhhhcccC
Q 000944         1110 --GGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYF-----PVKDVIDGDLCEQFPTL 1182 (1213)
Q Consensus      1110 --~~~~i~~~t~~Gsig~l~~l~~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~-----p~~~~iDGdll~~fl~l 1182 (1213)
                        ..+.++|||++|+||.+..+ ..+.+.+|..||++|++..+++||++|.+||+++.     |++|||||||+|+|++|
T Consensus       983 ~~~~~~vlfgTv~GsIG~i~sl-~~d~~~fL~~Lq~~irk~i~s~gglsH~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l 1061 (1096)
T KOG1897|consen  983 IPLEPKVLFGTVNGSIGIIVSL-PQDWYDFLEELQRRIRKVIKSVGGLSHMDYRSFEFEKRTSPVKGFIDGDLIESFLDL 1061 (1096)
T ss_pred             cCCCCcEEEEEccceEEEEEec-CcchhHHHHHHHHHHHHhhcccCCcchhhHhhhhcccccCCCcCcccchHHHhhhcc
Confidence              24679999999999999999 57789999999999999999999999999999875     99999999999999999


Q ss_pred             CHHHHHHHHHHcCCC-----HHHHHHHHHHHHhc
Q 000944         1183 SLDLQRKIADELDRT-----PGEILKKLEEIRNK 1211 (1213)
Q Consensus      1183 ~~~~q~~i~~~~~~~-----~~~i~~~l~~l~~~ 1211 (1213)
                      +.+.+.+|++++..+     +++|++.+|+|++.
T Consensus      1062 ~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rl 1095 (1096)
T KOG1897|consen 1062 SRSKMREIVRGLEHTESLASVQELLKIVEELTRL 1095 (1096)
T ss_pred             CHHHHHHHHhhcccccccCCHHHHHHHHHHHHhc
Confidence            999999999999766     99999999999874

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]	Back alignment and domain information

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]	Back alignment and domain information

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>PF14727 PHTB1_N: PTHB1 N-terminus	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PF14727 PHTB1_N: PTHB1 N-terminus	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1213
3ei1_A		1158	Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho		4e-57
4a0l_A		1144	Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp		4e-57
3e0c_A		1140	Crystal Structure Of Dna Damage-Binding Protein 1(D		5e-57
4e54_A		1150	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		5e-57
4a11_A		1159	Structure Of The Hsddb1-Hscsa Complex Length = 1159		5e-57
4a0b_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup		7e-57
4a0a_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup		1e-56
4a08_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup		1e-56
3ei4_A		1158	Structure Of The Hsddb1-Hsddb2 Complex Length = 115		2e-55
3i7h_A		1143	Crystal Structure Of Ddb1 In Complex With The H-Box		2e-55
2b5l_A		1140	Crystal Structure Of Ddb1 In Complex With Simian Vi		2e-55
2b5n_A		323	Crystal Structure Of The Ddb1 Bpb Domain Length = 3		5e-21

>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158