Citrus Sinensis ID: 000952
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1210 | ||||||
| 359486635 | 1205 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.982 | 0.741 | 0.0 | |
| 224109556 | 1221 | predicted protein [Populus trichocarpa] | 0.990 | 0.981 | 0.733 | 0.0 | |
| 296086263 | 1188 | unnamed protein product [Vitis vinifera] | 0.964 | 0.982 | 0.736 | 0.0 | |
| 255575086 | 1206 | conserved hypothetical protein [Ricinus | 0.983 | 0.986 | 0.727 | 0.0 | |
| 356502438 | 1207 | PREDICTED: uncharacterized protein LOC10 | 0.961 | 0.964 | 0.702 | 0.0 | |
| 356567226 | 1194 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.971 | 0.694 | 0.0 | |
| 449459962 | 1244 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.957 | 0.931 | 0.665 | 0.0 | |
| 240255333 | 1184 | uncharacterized protein [Arabidopsis tha | 0.973 | 0.994 | 0.679 | 0.0 | |
| 9294353 | 1213 | unnamed protein product [Arabidopsis tha | 0.971 | 0.969 | 0.677 | 0.0 | |
| 297834062 | 1190 | hypothetical protein ARALYDRAFT_318028 [ | 0.961 | 0.978 | 0.669 | 0.0 |
| >gi|359486635|ref|XP_002279201.2| PREDICTED: uncharacterized protein LOC100263302 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1199 (74%), Positives = 1012/1199 (84%), Gaps = 15/1199 (1%)
Query: 15 RLGVGGGVSGVSRLRSSSMKKPPEPLRRAVADCLSSSAASSSPSLLHPGSPSGVVFEASR 74
RL +G VSRLRSSS++KPPEPLRRAVADCLS +A+++ LH G+PS EASR
Sbjct: 15 RLQLGA----VSRLRSSSLRKPPEPLRRAVADCLSVAASAA----LH-GTPSAAASEASR 65
Query: 75 TLRDYLASPATTDMAFSVIIEHTIAERERSPAVVARCVALLKRYLLRYKPSEETLLQIDR 134
TLRDYLA+ TTD A+ VI+EHT+AERERSPAVVARCVALLKRYLLRY+PSEETL QIDR
Sbjct: 66 TLRDYLANTTTTDQAYIVILEHTLAERERSPAVVARCVALLKRYLLRYRPSEETLQQIDR 125
Query: 135 FCLNTISECAITPNRKVSPWSRSLNQQSGASTASVNASPSLPVSSFTSGTLVKSLNYVRS 194
FC++TI++C I+PNR+ SPWSRSL+QQSGAST+S SPSLPVS+F SGTLVKSLNY+RS
Sbjct: 126 FCISTIADCDISPNRRSSPWSRSLSQQSGASTSSTTISPSLPVSTFASGTLVKSLNYIRS 185
Query: 195 LVAQHIPRRSFQPASFAGSPSASRQALPTLSSLLSRSFNSQIIPANVVESAENKDSATLS 254
LVA+HIP+RSFQPA+FAG+ SASRQ+LP+LSSLLSRSFNSQ+ P N ES+EN D++TLS
Sbjct: 186 LVARHIPKRSFQPAAFAGAASASRQSLPSLSSLLSRSFNSQLNPTNSGESSENNDASTLS 245
Query: 255 VSTLSNIEEADGMEDLDYIALDVLKWRWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGA 314
VS SN+E+ DG ED++YIALDVL+WRW E QSS +S++ DRV Q+M + +FLEVGA
Sbjct: 246 VSNFSNVEKVDGGEDVEYIALDVLQWRWPGEQQSSMVSSDSDRVVNPQDMGTHSFLEVGA 305
Query: 315 AALLLGDMEAKMKGQPWKYIGTNDMPYLDQLLQPSSATTITNSASARSHLTAVTASKRTK 374
AALL+GDMEAKMKGQPW + T +MP++DQLLQPSS TT TNS SAR HL A+T+SKR+K
Sbjct: 306 AALLVGDMEAKMKGQPWSHFRTAEMPHVDQLLQPSSVTTATNSVSARPHLKAITSSKRSK 365
Query: 375 AGPRQIWENAPVNTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSPNVNVM 434
G QIWE++PV+TFRP AR LFQYRHYSEQQPLRLNP EV EVIAAVCS+T+SPN N+M
Sbjct: 366 PGSYQIWEDSPVSTFRPLARKLFQYRHYSEQQPLRLNPVEVREVIAAVCSDTASPNTNLM 425
Query: 435 TVSSRLSNNSGKPTMDVAVSVLIKLVIDMYVLDSGTAAPLTLSMLEEMLSSPRIACRVRA 494
T+SSRLSNN GKP+MDVAVSVLIKLVIDMYVLDSGTAAPLTLSMLEEM+SSP +A RVRA
Sbjct: 426 TMSSRLSNNRGKPSMDVAVSVLIKLVIDMYVLDSGTAAPLTLSMLEEMISSPTLASRVRA 485
Query: 495 FDLILNLGVHAHLLEPMMTDDASTIEEEYPQESFFDDEDQLTTEGKKKVDSAKKLGASTA 554
FDLILNLGVHAHLLEPM+ DDA+TIEE+Y ES+F++E QL T+ K++ DS KK+GAS+A
Sbjct: 486 FDLILNLGVHAHLLEPMVADDATTIEEDYSHESYFNNEAQLVTQEKRRTDSLKKMGASSA 545
Query: 555 IDKFESWILNILYEILLLLVQIEEKEESVWASSLSCLLYFVCDRGKIRRSRLNGLDIRVI 614
IDKFESWIL+ILYEILLLLVQIEEKEESVWAS+LSCLLYFVCDRGKI R+RL LDIRVI
Sbjct: 546 IDKFESWILSILYEILLLLVQIEEKEESVWASALSCLLYFVCDRGKICRNRLKCLDIRVI 605
Query: 615 KAFLETSRKNSWAEVVHCKLICMLINMLYEVPSGHSNAASS---FLVDQLDLIGGIESIF 671
+A L+ SR+NSWAEVVH KLICML NM Y+VP + SS FLVDQ+DLIGGIE IF
Sbjct: 606 QALLKVSRRNSWAEVVHSKLICMLSNMFYQVPDEPNKTVSSTPMFLVDQVDLIGGIEFIF 665
Query: 672 IEYGLAKSREARRNLYLVLFDYVLYQINETCISTGVSEYNDDEVQPIAALLALADAPEAF 731
+EY LA SRE RRNLYLVLFDYVL+QINETCI+T VSEY DDE+QP+A LL LADAPEAF
Sbjct: 666 LEYSLANSREERRNLYLVLFDYVLHQINETCIATSVSEYTDDEIQPLATLLTLADAPEAF 725
Query: 732 YISVMLGLEGFGEFLRRSISVALSRYPNRERLNMLLENMIEKFDMIISSFTHLDKEFSNL 791
YISV LG+EG GE L+RSIS AL+RYPN ERLN+LLE + EKFD IISSFTHLDKEF+++
Sbjct: 726 YISVKLGVEGIGEILKRSISTALTRYPNSERLNVLLEKITEKFDSIISSFTHLDKEFTHM 785
Query: 792 KQTTKTYKFLESIEGATSKNGGVMKAKFSWTTLHSLLHSERIPYRQNGYIWLGDLLIAEI 851
Q TK+Y+FL+ IE + MKAK SW TLHSLLHS+RI YR NGY WLGDLLIAE
Sbjct: 786 IQITKSYQFLDGIESGVLGHSVGMKAKLSWATLHSLLHSDRIAYRHNGYTWLGDLLIAET 845
Query: 852 SEEREASVWSNIKNLQHQIAYAGVHDYSASSNVPLSIWLMCGLLKSKDSTIRWGFLFVLE 911
SEER ASVWS I+NLQ QIA AGVHD S SS +PLSI LMCGLLKS+ + IRWGFLFVLE
Sbjct: 846 SEERNASVWSTIRNLQRQIALAGVHDSSISSKLPLSISLMCGLLKSRHNIIRWGFLFVLE 905
Query: 912 RLLMRCKFLLDENEMQHLSGSDVGHEHGDSRLEKANAVIDIMSSALLLVVQINETDRINI 971
RLLMRCKFLLDENE QH S S+VG H DSRLEKAN VIDIMSSAL LV Q ETDRINI
Sbjct: 906 RLLMRCKFLLDENE-QHSSSSEVGQIHEDSRLEKANVVIDIMSSALSLVAQ-KETDRINI 963
Query: 972 LKMCDILFSQLCLKVCPATAMPFGDGAHQSKVLGSVDETKKVDAAERGFQQESCRRDELF 1031
LKMCDILFSQLCLKV PATA P D H + GS E KKVD +E Q+ +CR DE
Sbjct: 964 LKMCDILFSQLCLKVLPATATPISDNKHHGLIFGSSGENKKVDTSECISQEVNCRWDEFM 1023
Query: 1032 EETGGRSGNNMNCPPICETASMAAQLLGGQAVVPMQLVARVPAALFYWPLIQLAGAATDN 1091
+ R G N + ICETAS+ A LL GQAVVPMQLVARVPA LFYWPLIQLA AATD+
Sbjct: 1024 DGFDSRFGYNSSTSRICETASIGALLLRGQAVVPMQLVARVPAPLFYWPLIQLASAATDD 1083
Query: 1092 ISLGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPAAFQEEVGGEEFFRELLDDTDS 1151
I+LGVAVGSKGRGNLPGATSDIRA+LLLLLIGKCTADPAAFQ EVGGEEFFRELL+D DS
Sbjct: 1084 IALGVAVGSKGRGNLPGATSDIRASLLLLLIGKCTADPAAFQ-EVGGEEFFRELLEDADS 1142
Query: 1152 RVAYYSSAFLLKRMMTEKPEKYQHMLQNLVFKAQQSNNEKLLENLYLQMRGLLHISNDI 1210
RVAYYSSAFLLKRMMTE+PEKYQ MLQNL+F+AQQSNNEKLLEN YLQMRG++ +SND+
Sbjct: 1143 RVAYYSSAFLLKRMMTEEPEKYQRMLQNLIFRAQQSNNEKLLENPYLQMRGIIQLSNDL 1201
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109556|ref|XP_002315235.1| predicted protein [Populus trichocarpa] gi|222864275|gb|EEF01406.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296086263|emb|CBI31704.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255575086|ref|XP_002528448.1| conserved hypothetical protein [Ricinus communis] gi|223532124|gb|EEF33931.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356502438|ref|XP_003520026.1| PREDICTED: uncharacterized protein LOC100791584 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356567226|ref|XP_003551822.1| PREDICTED: uncharacterized protein LOC100800748 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449459962|ref|XP_004147715.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101205603 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|240255333|ref|NP_187865.6| uncharacterized protein [Arabidopsis thaliana] gi|332641699|gb|AEE75220.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9294353|dbj|BAB02250.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297834062|ref|XP_002884913.1| hypothetical protein ARALYDRAFT_318028 [Arabidopsis lyrata subsp. lyrata] gi|297330753|gb|EFH61172.1| hypothetical protein ARALYDRAFT_318028 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1210 | ||||||
| TAIR|locus:2091270 | 1184 | AT3G12590 "AT3G12590" [Arabido | 0.974 | 0.995 | 0.627 | 0.0 |
| TAIR|locus:2091270 AT3G12590 "AT3G12590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3698 (1306.8 bits), Expect = 0., P = 0.
Identities = 762/1215 (62%), Positives = 889/1215 (73%)
Query: 1 MSSIYSPXXXXXXXXXXXXXXXXXXXXXXXXXMKKPPEPLRRAVADCXXXXXXXXXXXXX 60
MSS YSP KKPPEPLRRAVADC
Sbjct: 1 MSSTYSPGQSPGSSRLLQLGAAGSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHG 60
Query: 61 XXXXXXXVVFEASRTLRDYLASPATTDMAFSVIIEHTIAERERSPAVVARCVALLKRYLL 120
EA R LRDYL++ ATTD+A+++++EHTIAER+RSPAVV RCVALLKRY+L
Sbjct: 61 AIPSMAPS--EALRNLRDYLSASATTDLAYNMLLEHTIAERDRSPAVVTRCVALLKRYIL 118
Query: 121 RYKPSEETLLQIDRFCLNTISECAITPNRKVSPWSRSLNQQSGASTASVNASPSLPVSSF 180
RYKP EETLLQ+D+FC+N I+EC + +K P +A ASP LPVSSF
Sbjct: 119 RYKPGEETLLQVDKFCVNLIAECDASLKQKSLP----------VLSAPAGASP-LPVSSF 167
Query: 181 TSGTLVKSLNYVRSLVAQHIPRRSFQPASFAGSPSASRQALPTLSSLLSRSFNSQIIPAN 240
S LVKSL+YVRSLVA HIPRRSFQPA+FAG+ ASRQ LP+LSSLLS+SFNSQ+ PAN
Sbjct: 168 ASAALVKSLHYVRSLVALHIPRRSFQPAAFAGATLASRQLLPSLSSLLSKSFNSQLSPAN 227
Query: 241 VVESAENKDSATLSVSTLSNIEEADGMEDLDYIALDVLKWRWLDESQSSSMSTEGDRVAT 300
ES + KD+A LSVS LSNI+E + MED +YI+ D+L WRW+ E Q SS S+E +R
Sbjct: 228 AAESPQKKDAANLSVSNLSNIQEINAMEDTEYISSDLLNWRWVGELQLSSASSESERPVN 287
Query: 301 IQEMSSLNFLEVGAAALLLGDMEAKMKGQPWKYIGTNDMPYLDQLLQPXXXXXXXXXXXX 360
+Q+M++ N LEVGAA LL+GDMEAKMKGQ WKY GT +MPYL+QLLQP
Sbjct: 288 LQDMNNCNLLEVGAAGLLVGDMEAKMKGQHWKYFGTAEMPYLEQLLQPASVTMITNSASA 347
Query: 361 XXHLTAVTASKRTKAGPRQIWENAPVNTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIA 420
HL A+TASKRT+AGP+QIW+++ VNTFRPRARPLFQYRHYSEQQPLRLNPAEV EVIA
Sbjct: 348 RSHLRAITASKRTRAGPQQIWDDSTVNTFRPRARPLFQYRHYSEQQPLRLNPAEVGEVIA 407
Query: 421 AVCSETSSPNVNVMTVSSRLSNNSGKPTMDVAVSVLIKLVIDMYVLDSGTAAPLTXXXXX 480
AVCSE SS N MTVS +L++ +GKP+MDVAVSVLIKLVIDMYVLD+ AAPLT
Sbjct: 408 AVCSEASSTPSNQMTVSPQLTSKTGKPSMDVAVSVLIKLVIDMYVLDARIAAPLTLSMLE 467
Query: 481 XXXXXPRIACRVRAFDLILNLGVHAHLLEPMMTDDASTIEEEYPQESFFDDEDQLTTEGK 540
+ CR+R FDLILNLGVHA LLEPM++D+A+TIEE+Y QE++ D+E++L +G
Sbjct: 468 EMLCSTKAPCRIRVFDLILNLGVHAQLLEPMISDNATTIEEDYAQETYIDNENRLLLQGT 527
Query: 541 KKVDSAKKLGASTAIDKFESWXXXXXXXXXXXXXXXXXXXXSVWASSLSCLLYFVCDRGK 600
+ D K S+AI+ FESW VWAS+LSCLLYF+CDRGK
Sbjct: 528 RTKDLPKMSSTSSAIENFESWILKILFEILLLLVQVEEKEECVWASALSCLLYFICDRGK 587
Query: 601 IRRSRLNGLDIRVIKAFLETSRKNSWAEVVHCKLICMLINMLYEVPS--GHSNA---ASS 655
IRR++LNGLDIRVIKA L TS++NSW+EVVH KLIC++ NM Y+ P G + A AS+
Sbjct: 588 IRRNQLNGLDIRVIKALLGTSKRNSWSEVVHSKLICIMTNMFYQSPEPEGSNKAISSASN 647
Query: 656 FLVDQLDLIGGIESIFIEYGLAKSREARRNLYLVLFDYVLYQINETCISTGVSEYNDDEV 715
FL+DQ+DLIGG+E IF EY LA +RE RRNLY VLFDYVL+QINE C S G+SEY DDE+
Sbjct: 648 FLIDQVDLIGGVEYIFFEYSLATTREERRNLYSVLFDYVLHQINEACSSAGLSEYTDDEI 707
Query: 716 QPIXXXXXXXXXPEAFYISVMLGLEGFGEFLRRSISVALSRYPNRERLNMLLENMIEKFD 775
QP+ PEAFYISV LG+EG GE LRRSI+ ALS + N ERLN LL N+ EKFD
Sbjct: 708 QPLAVRLALADAPEAFYISVKLGVEGIGEILRRSIAAALSGFSNSERLNQLLANITEKFD 767
Query: 776 MIISSFTHLDKEFSNLKQTTKTYKFLESIEGATSKNGGVMKAKFSWTTLHSLLHSERIPY 835
II SFTHLDKEF +LKQ TK+ KF+ESI +N M +W TLHSLLHSER Y
Sbjct: 768 TIIGSFTHLDKEFLHLKQITKSSKFMESI--LDLRNDISMSVNLAWATLHSLLHSERTTY 825
Query: 836 RQNGYIWLGDLLIAEISEEREASVWSNIKNLQHQIAYAGVHDYSASSNVPLSIWLMCGLL 895
RQNGYIWLGDLLIAEISEE S+W +IK+LQ +IA+ G D +S+VP+SI L+CGLL
Sbjct: 826 RQNGYIWLGDLLIAEISEESGGSIWLSIKDLQQKIAHCGTSDSLVTSDVPISIHLLCGLL 885
Query: 896 KSKDSTIRWGFLFVLERLLMRCKFLLDENEMQHLSGSDVGHEHGDSRLEKANAVIDIMSS 955
KS++S IRWGFLF+LERLLMR KFLLDENE Q +G +H D RLEKANAVIDIMSS
Sbjct: 886 KSRNSVIRWGFLFILERLLMRSKFLLDENETQRSTGGVATQDHKDKRLEKANAVIDIMSS 945
Query: 956 ALLLVVQINETDRINILKMCDILFSQLCLKVCPATAMPFGDGAHQSKVLGSVDETKKVDA 1015
AL L+ QINETDRINILKMCDILFSQLCLKV + V S D K D
Sbjct: 946 ALSLMAQINETDRINILKMCDILFSQLCLKVL---------STDEDAVPNSADRNSKFDT 996
Query: 1016 AERGFQQESCRRDELFEETGGRSGNNMNCPPICETASMAAQLLGGQAVVPMQLVARVPAA 1075
+ R +ES DE +T R NN++ CETASMAA LL GQA+VPMQLVARVPAA
Sbjct: 997 SHRNSYKESV--DE--GDTKPRY-NNVSVST-CETASMAAMLLRGQAIVPMQLVARVPAA 1050
Query: 1076 LFYWPLIQLAGAATDNISLGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPAAFQEE 1135
LFYWPLIQLAGAATDNI+LGVAVGSKGRGN+PGATSDIRATLLLLLIGKCTAD AFQE
Sbjct: 1051 LFYWPLIQLAGAATDNIALGVAVGSKGRGNIPGATSDIRATLLLLLIGKCTADTVAFQE- 1109
Query: 1136 VGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHMLQNLVFKAQQSNNEKLLEN 1195
VGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTE+PEKYQ+MLQ LVFKAQQSNNEKLLEN
Sbjct: 1110 VGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEEPEKYQNMLQKLVFKAQQSNNEKLLEN 1169
Query: 1196 LYLQMRGLLHISNDI 1210
YLQM G+L +SN++
Sbjct: 1170 PYLQMCGILQLSNEL 1184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1210 1112 0.00089 123 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 626 (67 KB)
Total size of DFA: 486 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 91.76u 0.11s 91.87t Elapsed: 00:00:04
Total cpu time: 91.77u 0.11s 91.88t Elapsed: 00:00:04
Start: Mon May 20 23:33:59 2013 End: Mon May 20 23:34:03 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.X.2281.1 | hypothetical protein (1209 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 96/609 (15%), Positives = 181/609 (29%), Gaps = 184/609 (30%)
Query: 450 DVAVSVLIKLVIDM---YVLDSGTAAPLTLSMLEEMLSSPRIACRV-RAFDLILNLG--V 503
D+ V + V D + L+ ++ ++ S R F +L+ +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 504 HAHLLEPMMTDD----ASTIEEEYPQES-----FFDDEDQLTTEG----KKKVDSAKKLG 550
+E ++ + S I+ E Q S + + D+L + K V +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-- 136
Query: 551 ASTAIDKFESWILNILYEILLLLVQIEEKEESVWASSLSCLLYFVCDRGKIRRSRLNGLD 610
K +L + +L+ + V S + + VC L
Sbjct: 137 ----YLKLRQALLELRPAKNVLI-------DGVLGSGKTWVALDVC------------LS 173
Query: 611 IRVIKAFLETSRKNSWAEVVHCK----LICMLINMLYEV-PSGHSNAASSFLVDQL--DL 663
+V K W + +C ++ ML +LY++ P+ S + S + +
Sbjct: 174 YKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 664 IGGIESIFIEYGLAKSREARRNLYLVL-----------FDY---VLYQINETCISTGVSE 709
+ + KS+ L LVL F+ +L ++ +S
Sbjct: 231 QAELRRLL------KSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 710 --------------YNDDEVQPIAALLALA------DAP-EAFYISVMLGLEGFGEFLRR 748
DEV+ +LL D P E + L E +R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRD 339
Query: 749 SISVALSRYPNRERLNMLLENMIEKFDMII-SSFTHLD--------KEFS----NLKQTT 795
++ + N + +N +K II SS L+ S + T
Sbjct: 340 GLA----TWDNWKHVN------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 796 KTYKFL---------ESIEGATSKNGGVMKAKFSWT-TLHSL-------------LHSE- 831
+ + K V K T ++ S+ LH
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 832 ----RIP--YRQN--------GYIW--LGD-LLIAEISEEREA--SVWSNIKNLQHQIAY 872
IP + + Y + +G L E E V+ + + L+ +I +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 873 AGVHDYSASSNVPL---------SIWLMCGLLKSKDSTIRWGFLFVLERLLMRCKF---- 919
++ S + I + + I FL +E L+ K+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDLL 568
Query: 920 ---LLDENE 925
L+ E+E
Sbjct: 569 RIALMAEDE 577
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00