Citrus Sinensis ID: 000955
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1210 | 2.2.26 [Sep-21-2011] | |||||||
| Q55FD6 | 688 | PHD finger-containing pro | yes | no | 0.139 | 0.245 | 0.317 | 3e-17 | |
| Q6P2L6 | 1439 | Histone-lysine N-methyltr | yes | no | 0.103 | 0.086 | 0.339 | 5e-14 | |
| O88491 | 2588 | Histone-lysine N-methyltr | no | no | 0.104 | 0.049 | 0.310 | 7e-14 | |
| Q96L73 | 2696 | Histone-lysine N-methyltr | yes | no | 0.104 | 0.047 | 0.310 | 1e-13 | |
| Q8BVE8 | 1365 | Histone-lysine N-methyltr | no | no | 0.101 | 0.090 | 0.343 | 2e-13 | |
| O96028 | 1365 | Histone-lysine N-methyltr | no | no | 0.101 | 0.090 | 0.337 | 3e-13 | |
| Q9BZ95 | 1437 | Histone-lysine N-methyltr | no | no | 0.103 | 0.086 | 0.320 | 5e-13 |
| >sp|Q55FD6|Y8158_DICDI PHD finger-containing protein DDB_G0268158 OS=Dictyostelium discoideum GN=DDB_G0268158 PE=4 SV=1 | Back alignment and function desciption |
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Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 15 HDTEEDESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFH-ATIDAGEESHCASLGLTK- 72
++T +D+ + ++VC+FC+ G+LL C+G CLRSFH + + A + +S ++
Sbjct: 121 NETNDDDKPKRPRKNEAVCTFCEKPGELLMCDGLCLRSFHISCLKARNLYNPSSSSISPV 180
Query: 73 DEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLL 132
++ + + C +C Q+ CF+C K G G ++ C CG FYH C
Sbjct: 181 TTIDGTVRWECNDCVSSQNSCFSCKKRGI----IGIDLMKCKVHQCGKFYHYKC------ 230
Query: 133 RDDEVAADQLAKSI-IAGESFTCPLHKCCICK-QGENKADSDLQFAVCRRCPKAYHRKCL 190
VA +LAK I F CPLH C +C+ G+ K Q C RCP AYH C+
Sbjct: 231 ----VADYKLAKLINTKTPRFNCPLHYCSVCEVSGDGK-----QSVHCFRCPTAYHVICM 281
Query: 191 PRKIAFEDKLEE 202
+ K E
Sbjct: 282 QPGVKMLTKTRE 293
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BVE8|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O96028|NSD2_HUMAN Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1210 | ||||||
| 359494102 | 1260 | PREDICTED: uncharacterized protein LOC10 | 0.6 | 0.576 | 0.624 | 0.0 | |
| 147814981 | 2238 | hypothetical protein VITISV_020586 [Viti | 0.753 | 0.407 | 0.535 | 0.0 | |
| 255576262 | 1249 | protein binding protein, putative [Ricin | 0.676 | 0.654 | 0.573 | 0.0 | |
| 297737514 | 1201 | unnamed protein product [Vitis vinifera] | 0.708 | 0.713 | 0.511 | 0.0 | |
| 356569700 | 1225 | PREDICTED: uncharacterized protein LOC10 | 0.636 | 0.628 | 0.541 | 0.0 | |
| 357459829 | 1289 | hypothetical protein MTR_3g055370 [Medic | 0.614 | 0.576 | 0.519 | 0.0 | |
| 145359280 | 1297 | enhanced downy mildew 2 [Arabidopsis tha | 0.580 | 0.542 | 0.558 | 0.0 | |
| 297796419 | 1294 | hypothetical protein ARALYDRAFT_495622 [ | 0.572 | 0.535 | 0.559 | 0.0 | |
| 225446989 | 1216 | PREDICTED: uncharacterized protein LOC10 | 0.571 | 0.568 | 0.550 | 0.0 | |
| 9758171 | 1332 | unnamed protein product [Arabidopsis tha | 0.602 | 0.547 | 0.527 | 0.0 |
| >gi|359494102|ref|XP_002276879.2| PREDICTED: uncharacterized protein LOC100243584 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/745 (62%), Positives = 574/745 (77%), Gaps = 19/745 (2%)
Query: 3 GFIVDDMEEDMVHDTEEDESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEE 62
GFIVD M+ED + +T E S+EE++LFDSVCS CDNGGDLLCCEGRC+RSFHAT +AGEE
Sbjct: 196 GFIVDYMDEDGISETGEVGSDEEEDLFDSVCSMCDNGGDLLCCEGRCMRSFHATKEAGEE 255
Query: 63 SHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFY 122
S CA+LG++ +VEAM NF+CKNC+YKQHQCF+CGKLGSSDK +GAEVF C +ATCG FY
Sbjct: 256 SLCATLGMSVAQVEAMQNFYCKNCKYKQHQCFSCGKLGSSDKSSGAEVFLCANATCGRFY 315
Query: 123 HPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKADSDLQFAVCRRCP 182
HP CV+KLL R+DE AA++L K+I AGE F CP+H+C +CKQGE+K D +LQFA+CRRCP
Sbjct: 316 HPQCVAKLLHREDEAAAEELQKNIYAGELFACPIHRCHVCKQGEDKKDLELQFAICRRCP 375
Query: 183 KAYHRKCLPRKIAFEDKLEEGIITRAWEGLLPNHRILIYCLKHEIDDEIGTPIRDHIIFP 242
K+YHRKCLPRKI+FED EEGII RAW+GLLPN RILIYCLKHEID+ +GTPIRDHI FP
Sbjct: 376 KSYHRKCLPRKISFEDLDEEGIIQRAWDGLLPN-RILIYCLKHEIDELLGTPIRDHIKFP 434
Query: 243 GIEENKTIIDRPRKKQSLASPSGKQKVASTKSSLTSKAPPQGKFSVKALKRV---PSKAG 299
EE R+ + +S KV S K SL S+ P+ + +VKA K+V S
Sbjct: 435 NDEEKM----EKRRSELFSSRKDLDKVVSKKRSLVSEDSPRERMAVKATKQVEKLSSTVK 490
Query: 300 QGETMEISERLLVGSDSSRRAKATDVSRKSFKGNVKSLSVQVDRSSSVDSKKTSLGERLY 359
G++ + SE+ G D S+R K T S+KS NVKS+S +VD+SS D KTSLGE+LY
Sbjct: 491 DGDSTKKSEKRSSGPDPSKRLKVTGFSKKSLDDNVKSISKKVDKSSMADENKTSLGEQLY 550
Query: 360 AAFVTEGTEQTKFGKQDNSDRETSRTVTVKPLRKKLISELPSLDEDSKRRLSSLMKDAAS 419
A +++ K+D + E + V K K S LPSLD DS+ R+ +++K++ S
Sbjct: 551 ALI----KNRSEPRKEDTPNSELEQKVVTK----KTSSSLPSLDRDSENRILAIIKESKS 602
Query: 420 SVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKA 479
+ +E+++K+HK+PSTHAY+SK+ VD+ IT GKVEGS+EA+R ALKKL+ G SIEDAKA
Sbjct: 603 LITLEDVMKKHKVPSTHAYSSKNTVDRTITQGKVEGSIEALRAALKKLE-GGGSIEDAKA 661
Query: 480 VCEPEVLSQIFKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMI 539
VCEPEVL+QI KWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKL+ IV+KLH+YV +GD I
Sbjct: 662 VCEPEVLNQIVKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLKEIVEKLHYYVKNGDTI 721
Query: 540 VDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPAKNDFNFEKRDWMTVEPKELAPGSRL 599
VDFCCGANDFSCLMK+KL+E GK C YKNYD++ KNDFNFEKRDWM+V+ KEL GS+L
Sbjct: 722 VDFCCGANDFSCLMKQKLEEMGKKCSYKNYDVIQPKNDFNFEKRDWMSVKQKELPTGSQL 781
Query: 600 IMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPETERLDRKESAYELVWEDDQFLSG 659
IMGLNPPFGVKA LAN FINKAL+F PKLLILIVPPETERLD+K Y+L+WEDD LSG
Sbjct: 782 IMGLNPPFGVKASLANMFINKALQFKPKLLILIVPPETERLDKKRPPYDLIWEDDNELSG 841
Query: 660 KSFYLPGSVDENDKQMDQWNMTAPPLYLWSRHDYAAHHKALAEKHGHISRPQSRTQMERN 719
KSFYLPGSVD NDKQ++QWN+ P LYLWSR D+ H+A+A+K GH+SR + + +E+
Sbjct: 842 KSFYLPGSVDVNDKQIEQWNVNPPLLYLWSRQDWTTKHRAIAQKCGHVSRRRRVSHLEKI 901
Query: 720 CYETHAVDHP--KEEGQGDASMLID 742
E +DHP + G SM++D
Sbjct: 902 QNEEPVLDHPMADQTHSGHVSMMLD 926
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147814981|emb|CAN61366.1| hypothetical protein VITISV_020586 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255576262|ref|XP_002529024.1| protein binding protein, putative [Ricinus communis] gi|223531504|gb|EEF33335.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297737514|emb|CBI26715.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356569700|ref|XP_003553034.1| PREDICTED: uncharacterized protein LOC100803073 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357459829|ref|XP_003600195.1| hypothetical protein MTR_3g055370 [Medicago truncatula] gi|355489243|gb|AES70446.1| hypothetical protein MTR_3g055370 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|145359280|ref|NP_200350.2| enhanced downy mildew 2 [Arabidopsis thaliana] gi|334188424|ref|NP_001190545.1| enhanced downy mildew 2 [Arabidopsis thaliana] gi|332009240|gb|AED96623.1| enhanced downy mildew 2 [Arabidopsis thaliana] gi|332009241|gb|AED96624.1| enhanced downy mildew 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297796419|ref|XP_002866094.1| hypothetical protein ARALYDRAFT_495622 [Arabidopsis lyrata subsp. lyrata] gi|297311929|gb|EFH42353.1| hypothetical protein ARALYDRAFT_495622 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|225446989|ref|XP_002268363.1| PREDICTED: uncharacterized protein LOC100248222 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|9758171|dbj|BAB08556.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1210 | ||||||
| TAIR|locus:2173857 | 1297 | EDM2 "ENHANCED DOWNY MILDEW 2" | 0.600 | 0.560 | 0.545 | 2.7e-213 | |
| TAIR|locus:2162667 | 677 | ELP1 "EDM2-like protein1" [Ara | 0.273 | 0.488 | 0.521 | 6.3e-140 | |
| DICTYBASE|DDB_G0268158 | 688 | DDB_G0268158 "PHD zinc finger- | 0.126 | 0.222 | 0.329 | 6.9e-15 | |
| UNIPROTKB|J9NUG7 | 1359 | WHSC1 "Uncharacterized protein | 0.083 | 0.074 | 0.344 | 8.9e-07 | |
| UNIPROTKB|F1PK46 | 1362 | WHSC1 "Uncharacterized protein | 0.083 | 0.074 | 0.344 | 8.9e-07 | |
| UNIPROTKB|F1S8S0 | 1361 | WHSC1 "Uncharacterized protein | 0.083 | 0.074 | 0.344 | 1.1e-06 | |
| MGI|MGI:1276574 | 1365 | Whsc1 "Wolf-Hirschhorn syndrom | 0.083 | 0.073 | 0.352 | 1.1e-06 | |
| UNIPROTKB|F1MMY4 | 1368 | WHSC1 "Uncharacterized protein | 0.083 | 0.073 | 0.336 | 2.4e-06 | |
| ZFIN|ZDB-GENE-080519-2 | 1873 | nsd1b "nuclear receptor bindin | 0.076 | 0.049 | 0.339 | 5.6e-06 | |
| UNIPROTKB|D4A3R4 | 1439 | Whsc1l1 "Protein Whsc1l1" [Rat | 0.071 | 0.059 | 0.342 | 8.7e-06 |
| TAIR|locus:2173857 EDM2 "ENHANCED DOWNY MILDEW 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2026 (718.2 bits), Expect = 2.7e-213, Sum P(2) = 2.7e-213
Identities = 414/759 (54%), Positives = 517/759 (68%)
Query: 4 FIVDDMEEDMVHXXXXXXXXXXXXXXXSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEES 63
FIV D E+ V SVC+ CDNGG++LCCEG CLRSFHAT GE+S
Sbjct: 197 FIVGD-EDTYVASDEDELDDEDDDFFESVCAICDNGGEILCCEGSCLRSFHATKKDGEDS 255
Query: 64 HCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETGA-EVFPCVSATCGHFY 122
C SLG K +VEA+ +FC NCE+K HQCF C LGSSD +GA EVF CVSATCG+FY
Sbjct: 256 LCDSLGFNKMQVEAIQKYFCPNCEHKIHQCFICKNLGSSDNSSGAAEVFQCVSATCGYFY 315
Query: 123 HPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKADSDLQFAVCRRCP 182
HPHCV++ L ++ ++ L + IIAGE +TCPLHKC +C+ GE K DS+LQFAVCRRCP
Sbjct: 316 HPHCVTRRLRLGNKEESEALERQIIAGE-YTCPLHKCSVCENGEVKTDSNLQFAVCRRCP 374
Query: 183 KAYHRKCLPRKIAFEDKLEEGIITRAWEGLLPNHRILIYCLKHEIDDEIGTPIRDHIIFP 242
K+YHRKCLPR+I+FED +E I+TRAW+GLL N R+LIYC +HEID+E+ TP+RDH+ FP
Sbjct: 375 KSYHRKCLPREISFEDIEDEDILTRAWDGLLHN-RVLIYCQEHEIDEELLTPVRDHVKFP 433
Query: 243 GIEENKTIIDRPRKKQSLASPSGKQKVASTKSSLTSKAPPQGKFSVKALKRVPSKAGQGE 302
EE K + R+ L S G+ K A K + GK S + + + G
Sbjct: 434 FTEEQKVFVKEQRR--ILESHVGRDK-ARLKVKDPALQDTCGKASKNSFRSSFPSSKDG- 489
Query: 303 TMEISERLLVGS--DSSRRAKATD-------VSRKSFK-----GNVXXXXXXXXXXXXXX 348
+ LV S D SR+ K D V +KS K
Sbjct: 490 -FSTKKHGLVSSVPDHSRKRKDIDPSIKHKMVPQKSQKMMEDSREAGKNKLGVKEARDAG 548
Query: 349 XXXXXLGERLYAAFVTEGTEQTKFGKQDNSDRETSRTVTVKPLRKKLISELPSLDEDSKR 408
LGERL++ T+ K G+ D + ++T ++ K+ SE+P+LD DS+R
Sbjct: 549 KSKISLGERLFS--YTQEPNPVKPGRVIPVDSKHNKTDSIAS--KEPGSEIPTLDNDSQR 604
Query: 409 RLSSLMKDAASSVRMEEILKRHKIPSTHA-YASKSAVDKAITLGKVEGSVEAIRTALKKL 467
RL ++MK A + M ILK+ KI ST + +++++ VDK IT+GKVEGSV+AIRTALKKL
Sbjct: 605 RLLAVMKKATEEITMGTILKKFKIQSTMSTHSTRNVVDKTITMGKVEGSVQAIRTALKKL 664
Query: 468 DVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLQAIVD 527
+ +G +IEDAKAVCEPEVLSQI KWK+KLKVYLAPFLHG RYTSFGRHFT +KLQ IVD
Sbjct: 665 E-EGGNIEDAKAVCEPEVLSQILKWKDKLKVYLAPFLHGARYTSFGRHFTNPEKLQQIVD 723
Query: 528 KLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPAKNDFNFEKRDWMT 587
+LHWY +DGDMIVDFCCG+NDFSCLM KL+ETGK CLYKNYD+ PAKN+FNFE++DWMT
Sbjct: 724 RLHWYADDGDMIVDFCCGSNDFSCLMNAKLEETGKKCLYKNYDLFPAKNNFNFERKDWMT 783
Query: 588 VEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPETERLDRKESAY 647
V EL PGS+LIMGLNPPFGV A LANKFI KALEF PK+LILIVPPETERLD+K+S+Y
Sbjct: 784 VSKDELEPGSKLIMGLNPPFGVNASLANKFITKALEFRPKILILIVPPETERLDKKKSSY 843
Query: 648 ELVWEDDQFLSGKSFYLPGSVDENDKQMDQWNMTAPPLYLWSRHDYAAHHKALAEKHGHI 707
L+WED FLSG SFYLPGSV+E DKQ++ WN+ PPL LWSR D+AA HK +AEKH H+
Sbjct: 844 VLIWEDKTFLSGNSFYLPGSVNEEDKQLEDWNLVPPPLSLWSRSDFAAKHKKIAEKHCHL 903
Query: 708 SRPQSRTQMERNCYETHAVDHPKEEGQGDASMLIDLPLQ 746
SR ++++ E +A HP G D M D+P++
Sbjct: 904 SRDVGSSKLKIVEEEANASLHPL--GASDG-MCDDIPME 939
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| TAIR|locus:2162667 ELP1 "EDM2-like protein1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0268158 DDB_G0268158 "PHD zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9NUG7 WHSC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PK46 WHSC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S8S0 WHSC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1276574 Whsc1 "Wolf-Hirschhorn syndrome candidate 1 (human)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MMY4 WHSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-080519-2 nsd1b "nuclear receptor binding SET domain protein 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4A3R4 Whsc1l1 "Protein Whsc1l1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00027233001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (1259 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1210 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 4e-04 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 0.003 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 31 SVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNC 86
+VC D+ G+LL C+G C R FH C L +E+ ++C C
Sbjct: 3 AVCGKVDDDGELLLCDG-CDRWFHLA--------CLGPPLEPEEI-PEGEWYCPEC 48
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PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1210 | |||
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 98.69 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.63 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.06 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 98.04 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.67 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.58 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 97.48 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 97.45 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.34 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 97.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.21 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.16 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.16 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.08 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 97.07 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.97 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 96.92 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 96.91 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 96.87 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.78 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 96.67 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 96.63 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.62 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.56 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 96.44 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 96.24 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 96.22 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 96.12 | |
| PF15446 | 175 | zf-PHD-like: PHD/FYVE-zinc-finger like domain | 95.91 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.8 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 95.65 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 95.04 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 94.54 | |
| PF13771 | 90 | zf-HC5HC2H: PHD-like zinc-binding domain | 94.35 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.06 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 93.92 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 92.91 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 92.71 | |
| KOG1701 | 468 | consensus Focal adhesion adaptor protein Paxillin | 92.08 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 91.91 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 91.7 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 91.6 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 91.04 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 91.03 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 90.79 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 89.86 | |
| PF13832 | 110 | zf-HC5HC2H_2: PHD-zinc-finger like domain | 89.16 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 88.7 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 88.61 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 88.58 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 87.46 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 86.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 85.81 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 85.6 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 85.55 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 85.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 85.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 84.65 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 83.97 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 83.35 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 83.23 | |
| PF13832 | 110 | zf-HC5HC2H_2: PHD-zinc-finger like domain | 82.88 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 81.17 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 81.16 |
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-09 Score=123.33 Aligned_cols=101 Identities=25% Similarity=0.686 Sum_probs=79.4
Q ss_pred cccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCcc-ccccCCCccCCC
Q 000955 92 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHK-CCICKQGENKAD 170 (1210)
Q Consensus 92 qCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~-C~vCkkseDkn~ 170 (1210)
.|++|+..|.. ..+.++-|. .|+.+||+.|+..+... .+. ...|+||.|+ |+.|+..+|-+
T Consensus 20 mc~l~~s~G~~---~ag~m~ac~--~c~~~yH~~cvt~~~~~-----------~~l-~~gWrC~~crvCe~c~~~gD~~- 81 (694)
T KOG4443|consen 20 MCPLCGSSGKG---RAGRLLACS--DCGQKYHPYCVTSWAQH-----------AVL-SGGWRCPSCRVCEACGTTGDPK- 81 (694)
T ss_pred hhhhhcccccc---ccCcchhhh--hhcccCCcchhhHHHhH-----------HHh-cCCcccCCceeeeeccccCCcc-
Confidence 69999888863 234588998 99999999999976521 112 3459999998 99999887743
Q ss_pred CCCceeeccccCcccccccCCCCccccccccccccccccccccCCCceeEeccCc
Q 000955 171 SDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEGLLPNHRILIYCLKH 225 (1210)
Q Consensus 171 ~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~CLLpncRILI~CpkH 225 (1210)
+|+.|.+|..+||.+|+.|+.. .++...|.| +.+.-|..|
T Consensus 82 ---kf~~Ck~cDvsyh~yc~~P~~~-------~v~sg~~~c-----kk~~~c~qc 121 (694)
T KOG4443|consen 82 ---KFLLCKRCDVSYHCYCQKPPND-------KVPSGPWLC-----KKCTRCRQC 121 (694)
T ss_pred ---cccccccccccccccccCCccc-------cccCccccc-----HHHHhhhhc
Confidence 6999999999999999999864 688899997 334555555
|
|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain | Back alignment and domain information |
|---|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
| >PF13771 zf-HC5HC2H: PHD-like zinc-binding domain | Back alignment and domain information |
|---|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
| >PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain | Back alignment and domain information |
|---|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 7e-11
Identities = 94/672 (13%), Positives = 186/672 (27%), Gaps = 193/672 (28%)
Query: 54 HATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETGAEVFPC 113
H + GE + KD + + F N F C + K +
Sbjct: 6 HMDFETGEHQYQ-----YKDILSVFEDAFVDN--------FDCKDVQDMPKS----ILS- 47
Query: 114 VSATCGHFYH-PHCVSK------LLLRDDEVAADQLAKSIIAGE-SF-TCPLHKCCICKQ 164
H VS LL E + + ++ F P+
Sbjct: 48 -KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 165 GENK---ADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEGLLPNHRILIY 221
+ D + + K Y+ + R + + +A L P +LI
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK-YN---VSR----LQPYLK--LRQALLELRPAKNVLID 156
Query: 222 --------CLKHEI--DDEIGTPIRDHIIFPGIEENKTIIDRPRKKQSL---ASPSGKQK 268
+ ++ ++ + I + ++ + Q L P+ +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 269 VASTKSSLTSKAPPQGKFSVK-ALKRVPSKAGQGETMEISER-----LLVGSD--SSRRA 320
S S S++ L+R+ + + LLV + +++
Sbjct: 217 ------SDHSSNIKLRIHSIQAELRRL-----------LKSKPYENCLLVLLNVQNAKAW 259
Query: 321 KATDVSRK-----SFKGNVKSLSVQVDRSSSVDSKKTSLGER----LYAAFVTEGT---- 367
A ++S K FK LS S+D +L L ++
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 368 EQTK---------FGK--QDNSDR-ETSRTVTVKPLRKKLISELPSLDEDSKRR----LS 411
+ + +D + + V L + S L L+ R+ LS
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 412 SLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITL---GKVEGSVEAI------RT 462
A IP+ ++L ++ V + +
Sbjct: 380 VFPPSA-------------HIPT-----------ILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 463 ALKKLDVDGS-SIED------AKAVCEPEVLSQIFKWKNKLKVY-----LAPFLHGMRYT 510
++K + + SI K E + I N K + + P+L Y+
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNC------ 564
G H ++ + + + +DF F +++K+
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVF-------LDF-----RF---LEQKIRHDSTAWNASGSI 520
Query: 565 --------LYKNYDILPAKNDFNFEKR--DWMTVEPKE-----LAPGSRLI-MGLNPPFG 608
YK Y I ND +E+ + PK + + L+ + L
Sbjct: 521 LNTLQQLKFYKPY-I--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 609 VKAGLANKFINK 620
A+K + +
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1210 | |||
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 99.34 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 99.33 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 99.29 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 99.2 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 99.02 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 99.02 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.94 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.86 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 98.46 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 98.41 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 98.38 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 98.37 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 98.36 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 98.32 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 98.27 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 98.26 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 98.26 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 98.23 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 98.19 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 98.17 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 98.17 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 98.16 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 98.1 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 98.01 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 97.96 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.91 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 97.9 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 97.87 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.85 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 97.83 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 97.8 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 97.79 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 97.75 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 97.74 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 97.71 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 97.71 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.7 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 97.63 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 97.6 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 97.59 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 97.57 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 97.54 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.5 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 97.48 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 97.48 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 97.46 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 97.42 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 97.41 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 97.41 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.41 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 97.38 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 97.36 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.35 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.3 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 97.3 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 97.26 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.19 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 97.17 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 97.16 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.15 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 97.14 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 97.14 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 97.11 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.08 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 96.99 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 96.96 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 96.96 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 96.92 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 96.89 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.86 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 96.78 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.73 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 96.67 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 96.56 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 96.54 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 96.53 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 96.45 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 96.44 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 96.39 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 96.29 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 96.25 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.18 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 96.05 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 95.95 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 95.7 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 95.67 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 95.46 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 95.43 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 94.77 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 94.76 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 94.67 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 94.51 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 94.33 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 94.08 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 93.88 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 93.82 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 93.82 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 93.72 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 93.52 | |
| 3a1b_A | 159 | DNA (cytosine-5)-methyltransferase 3A, histone H3; | 93.46 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 93.35 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 93.23 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 93.18 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 93.08 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 92.81 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 92.2 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 92.13 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 92.13 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 91.93 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 91.68 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 90.99 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 90.99 | |
| 2pv0_B | 386 | DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, | 90.93 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 90.87 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 90.81 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 90.66 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 90.66 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 90.64 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 90.63 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 90.52 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 90.02 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 89.75 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 89.73 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 89.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 89.19 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 88.88 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 88.71 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 88.63 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 88.42 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 88.28 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 88.22 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 88.14 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 88.12 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 88.03 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 87.69 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 87.5 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 87.26 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 86.88 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 86.8 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 84.93 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 84.79 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 83.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 83.54 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 83.19 | |
| 2pv0_B | 386 | DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, | 83.13 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 82.54 | |
| 2lq6_A | 87 | Bromodomain-containing protein 1; PHD finger, meta | 82.53 | |
| 3rsn_A | 177 | SET1/ASH2 histone methyltransferase complex subun; | 82.07 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 81.31 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 81.28 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 80.67 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 80.37 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 80.19 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 80.15 |
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-13 Score=124.51 Aligned_cols=101 Identities=26% Similarity=0.717 Sum_probs=77.5
Q ss_pred cccCcccccccCCCCe---eccccccCCccccccccCcccccccCCCChhhhhccccccccchhhccccccccCCCCCCC
Q 000955 27 ELFDSVCSFCDNGGDL---LCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSD 103 (1210)
Q Consensus 27 DlnDdVCaIC~dGGEL---LCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~gQHqCFVCGqlGSSD 103 (1210)
+.++++|.+|+++|++ |+|+ .|.++||+.|+. +.+.. + +...|+|++|. .|.+|++.+..
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~--------~~~~~--~-~~~~W~C~~C~----~C~~C~~~~~~- 66 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLD--------IAVTP--L-KRAGWQCPECK----VCQNCKQSGED- 66 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTT--------CCCCT--T-TSTTCCCTTTC----CCTTTCCCSCC-
T ss_pred CCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhC--------Ccccc--c-cccCccCCcCC----cccccCccCCC-
Confidence 4568999999999976 9999 699999999533 33322 2 35789999997 69999988742
Q ss_pred CCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCccccccCCC
Q 000955 104 KETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQG 165 (1210)
Q Consensus 104 K~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~C~vCkks 165 (1210)
..++.|+ .|.+.||..|+.+.+.. +.. ..|+|| .|..|+.+
T Consensus 67 ----~~ll~Cd--~C~~~yH~~Cl~ppl~~------------~P~-g~W~C~--~C~~c~~g 107 (111)
T 2ysm_A 67 ----SKMLVCD--TCDKGYHTFCLQPVMKS------------VPT-NGWKCK--NCRICISG 107 (111)
T ss_dssp ----TTEEECS--SSCCEEEGGGSSSCCSS------------CCS-SCCCCH--HHHCCSCS
T ss_pred ----CCeeECC--CCCcHHhHHhcCCcccc------------CCC-CCcCCc--CCcCcCCC
Confidence 4799999 99999999999975421 233 479998 46666554
|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* | Back alignment and structure |
|---|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* | Back alignment and structure |
|---|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1210 | ||||
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 4e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 0.001 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 0.003 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 0.003 |
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Nuclear corepressor KAP-1 (TIF-1beta) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 4e-04
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 12/63 (19%)
Query: 30 DSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89
++C C GDL+ C C FH C L E + C C
Sbjct: 7 ATICRVCQKPGDLVMCNQ-CEFCFHLD--------CHLPALQDVPGE---EWSCSLCHVL 54
Query: 90 QHQ 92
Sbjct: 55 PDL 57
|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1210 | |||
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.26 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.0 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.64 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 97.51 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.47 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.31 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.29 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.22 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.2 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.03 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 96.96 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 96.78 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 96.74 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.72 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.59 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 96.14 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.1 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 96.0 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 95.08 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.88 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 94.73 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 94.66 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 94.41 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 93.6 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 93.48 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 92.48 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 92.02 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 92.01 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 90.33 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 88.71 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 86.09 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 83.73 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 83.04 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 81.55 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 80.52 |
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Mi2-beta (CHD4) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.4e-07 Score=77.34 Aligned_cols=50 Identities=28% Similarity=0.733 Sum_probs=38.2
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
|.++++|.+|.++|+||.|+ .|.++||..|+ .+.+... +...|+|+.|..
T Consensus 6 d~~~~~C~~C~~~g~lv~Cd-~C~~~~H~~C~--------~~~~~~~---~~~~W~C~~C~~ 55 (61)
T d1mm2a_ 6 DHHMEFCRVCKDGGELLCCD-TCPSSYHIHCL--------NPPLPEI---PNGEWLCPRCTC 55 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCS-SSCCCBCSSSS--------SSCCSSC---CSSCCCCTTTTT
T ss_pred cCCcCCCcCCCCCCeEEEeC-CCCccCchhhc--------CCCcCcC---CCCcEECCCCcC
Confidence 34456899999999999999 69999999953 3333321 346899999964
|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
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| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
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| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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