Citrus Sinensis ID: 000957

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------121

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

cccccccHHHHHcccccccEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHccccccccEEEEEEccccccEEEEEEccc

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAY*************************************************************************************WKNNFEGIV*******************KIKFLEQNIDAYTAEITNLLS******************LFARHNL**********EAALNFINRI*******************LALKMAWDSYLDANDRWKNIEA*****MEIKAGILK*****************************************************************************************************IIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTE**************************************************NQQIFSIDTYQKVL*************YNIADGMRQMFDPFERVARAHHVCPCCERP************************************YFQQLDKLRMVYEEYVKLSKETIPVAEKNLHEL********QAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDS******************************************LSNIQIRWHTLR************************************************************************KINFQQEIEMLLKIASKIKEYYDL**********************CKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI**

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MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLxxxxxxxxxxxxxxxxxxxxxKDAAYKLRESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKDLRKMQDQISTMTARRSTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFxxxxxxxxxxxxxxxxxxxxxDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHxxxxxxxxxxxxxxxxxxxxxHIDERENKMRIEVERKTNQLAEREFEINxxxxxxxxxxxxxxxxxxxxxKDVLAGDSEDRVKxxxxxxxxxxxxxxxxxxxxxxxxxIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETxxxxxxxxxxxxxxxxxxxxxFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWHTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKLLAEASGPLSKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEMLLKIASKIKEYYDLRKDERxxxxxxxxxxxxxxxxxxxxxTDEILVELDRFKDIVRNQDQIRRNIEDNLNxxxxxxxxxxxxxxxxxxxxxVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA repair protein RAD50	Implicated in double-strand breaks (DSBs) repair by non-homologous end joining (NHEJ). Involved in telomere maintenance. Involved in telomerase action on chromosome ends. Required during meiosis for both male and female gametophytic development, for pairing and synapsis of homologous chromosomes during the early stages of meiotic recombination, especially during the pachytene stage of the first division.	confident	Q9SL02

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1I84, chain S
Confidence level:very confident
Coverage over the Query: 898-941
View the alignment between query and template
View the model in PyMOL

Template: 1I84, chain S
Confidence level:very confident
Coverage over the Query: 653-686
View the alignment between query and template
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Template: 3BK7, chain A
Confidence level:very confident
Coverage over the Query: 1086-1203
View the alignment between query and template
View the model in PyMOL

Template: 2DFS, chain A
Confidence level:very confident
Coverage over the Query: 781-837
View the alignment between query and template
View the model in PyMOL

Template: 3GFO, chain A
Confidence level:confident
Coverage over the Query: 1049-1204
View the alignment between query and template
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Template: 1W1W, chain A
Confidence level:confident
Coverage over the Query: 1012-1034,1047-1063,1076-1079,1090-1207
View the alignment between query and template
View the model in PyMOL

Template: 3AUY, chain A
Confidence level:confident
Coverage over the Query: 28-105
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Template: 4GKW, chain A
Confidence level:probable
Coverage over the Query: 701-817
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Template: 2V71, chain A
Confidence level:probable
Coverage over the Query: 190-252
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Template: 1L8D, chain A
Confidence level:probable
Coverage over the Query: 569-611
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Template: 2EFR, chain A
Confidence level:probable
Coverage over the Query: 131-154
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Template: 2YCU, chain A
Confidence level:probable
Coverage over the Query: 336-499
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID	Alignment Graph	Confidence Level	View Alignment and Template
Query
3vkg, chain A		probable	Alignment \| Template Structure
3vkg, chain A		probable	Alignment \| Template Structure