Citrus Sinensis ID: 000957

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------121

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

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MEYKAIESVLQTinphtgekvCLSYRCadmdrevpaLMGVSKAILENVIFVhqdeanwplqdpstlkkkfdDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFArhnlgslpnapfsneAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLkgrlpldrDLKKEITQALRALLTEfddlssksrEADKEVNMLQMKIQEVTDNLSkhrkdvdsKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDpfervarahhvcpccerpfsaeeEDEFVKKQRVKAASSAEHMKVLSlessnadsYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELsgslstkdNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEasgplskeKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQtyrgqdidyirihsdsegagtrsYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNcgilaldepttnldgpnAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

MEYKAIESVlqtinphtgekVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEanwplqdpstlkkKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEgivakresdisklerekndmdtkIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSdlerdledkkksdelALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQisnlnlshiderenkMRIEVERktnqlaereFEINIRQKQSELFAMDQKIKALNrekdvlagdseDRVKLALKkaelenhkkkhkkiideykdkIRDVlkgrlpldrdlkKEITQALRALltefddlssksreaDKEVNMLQMKIQEvtdnlskhrkdvdSKKRFIESKleslnqqifsiDTYQKVLdsakekrdvqkskyniadGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVlslessnadSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLElsgslstkdnlQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMeekgqldldEKLLAEAsgplskekekllsdYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKelqekksqsesevksckirtdeilveldrfkdivrnqdqirrniednlnyretkakvDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTmsvyqtnisrnkiDLKQAQYKDIDKRHFDQLIQLkttemankdLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHsdsegagtrsySYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVklalkkaelenhkkkhkkiideykdkiRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAeeelehlmeeKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFkelqekksqsesevksCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

*******SVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAY*************************************************************************************WKNNFEGIV*******************KIKFLEQNIDAYTAEITNLLS******************LFARHNL**********EAALNFINRI*******************LALKMAWDSYLDANDRWKNIEA*****MEIKAGILK*****************************************************************************************************IIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTE**************************************************NQQIFSIDTYQKVL*************YNIADGMRQMFDPFERVARAHHVCPCCERP************************************YFQQLDKLRMVYEEYVKLSKETIPVAEKNLHEL********QAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDS******************************************LSNIQIRWHTLR************************************************************************KINFQQEIEMLLKIASKIKEYYDL**********************CKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTN********LAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK***************

MEYKAIESVLQTINP***E**CLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYT***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHS********SYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI**

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVL**********KSKYNIADGMRQMFDPFERVARAHHVCPCCERPFS********************HMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFK***************CKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSR*QGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

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MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLxxxxxxxxxxxxxxxxxxxxxKDAAYKLRESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKDLRKMQDQISTMTARRSTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFxxxxxxxxxxxxxxxxxxxxxDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHxxxxxxxxxxxxxxxxxxxxxHIDERENKMRIEVERKTNQLAEREFEINxxxxxxxxxxxxxxxxxxxxxKDVLAGDSEDRVKxxxxxxxxxxxxxxxxxxxxxxxxxIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETxxxxxxxxxxxxxxxxxxxxxFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWHTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKLLAEASGPLSKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEMLLKIASKIKEYYDLRKDERxxxxxxxxxxxxxxxxxxxxxTDEILVELDRFKDIVRNQDQIRRNIEDNLNxxxxxxxxxxxxxxxxxxxxxVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1209	2.2.26 [Sep-21-2011]
Q9SL02		1316	DNA repair protein RAD50	yes	no	1.0	0.918	0.722	0.0
P70388		1312	DNA repair protein RAD50	yes	no	0.952	0.877	0.290	1e-118
Q92878		1312	DNA repair protein RAD50	yes	no	0.950	0.875	0.294	1e-117
Q9JIL8		1312	DNA repair protein RAD50	yes	no	0.952	0.878	0.292	1e-117
Q54CS9		1351	DNA repair protein RAD50	yes	no	0.496	0.444	0.340	9e-84
Q9UTJ8		1285	DNA repair protein rad50	yes	no	0.459	0.432	0.340	1e-70
P12753		1312	DNA repair protein RAD50	yes	no	0.495	0.456	0.326	3e-63
Q9W252		1318	DNA repair protein RAD50	yes	no	0.239	0.220	0.392	6e-53
Q8SRK6		1247	DNA repair protein RAD50	yes	no	0.157	0.152	0.492	2e-50
C6KSQ6		2236	Probable DNA repair prote	yes	no	0.169	0.091	0.454	9e-50

>sp\|Q9SL02\|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2	Back alignment and function desciption

 Score = 1768 bits (4580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1209 (72%), Positives = 1028/1209 (85%)

Query: 1    MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPL 60
            MEYKAIESVLQTINPHTGEKVCLSYRCADMDRE+PALMGVSKAILENVIFVHQDE+NWPL
Sbjct: 108  MEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPL 167

Query: 61   QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRES 120
            QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKT+KLKLENLQTLKDAAYKLRES
Sbjct: 168  QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRES 227

Query: 121  ISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQ 180
            I+QDQE+TE+ K QM ELE S+Q +D ++H+ E+ LKDLRK+QDQ+S  TA RSTLF++Q
Sbjct: 228  IAQDQERTESSKVQMLELETSVQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQ 287

Query: 181  QKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240
            Q+QYAAL EE EDT EELK WK+ FE  +A   + I K+ERE  D +T I  L      Y
Sbjct: 288  QRQYAALPEENEDTIEELKEWKSKFEERLALLGTKIRKMEREMVDTETTISSLHNAKTNY 347

Query: 241  TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSD 300
              EI+ L +EA AHM   NERDSTIQ +F  +NLG++P+ PFS E  LN  NRI+SRL +
Sbjct: 348  MLEISKLQTEAEAHMLLKNERDSTIQNIFFHYNLGNVPSTPFSTEVVLNLTNRIKSRLGE 407

Query: 301  LERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDS 360
            LE DL DKKKS+E AL  AWD Y+DANDRWK+IEAQK+AK EIK GI K I+EKE ERDS
Sbjct: 408  LEMDLLDKKKSNETALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKEIERDS 467

Query: 361  FELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNRE 420
            FE +IS +++   DERE ++++E+ERKT Q +ER FE  I QKQ E+++++ KIK LNRE
Sbjct: 468  FEFEISTVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRE 527

Query: 421  KDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA 480
            +DV+AGD+EDRVKL+LKK E EN KKKHKKIIDE KD+IR VLKGRLP ++D+K+EI QA
Sbjct: 528  RDVMAGDAEDRVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKREIVQA 587

Query: 481  LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQ 540
            LR++  E+DDLS KSREA+KEVNMLQMKIQEV ++L KH KD +S+KR+IESKL++L Q+
Sbjct: 588  LRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQE 647

Query: 541  IFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEE 600
              +ID Y K+L+SAK+KRD +K +YN+A+GMRQMF+PFE+ AR  H CPCCER F+A+EE
Sbjct: 648  SVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEE 707

Query: 601  DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNL 660
              F+KKQRVKA+S+ EH+K L++ESSNADS FQQLDKLR V+EEY KL+ E IP+AEK L
Sbjct: 708  ASFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTL 767

Query: 661  HELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEY 720
             E TEEL QKS+A DDVLG+ AQIKADK+S+E LVQP+E ADR+FQEI  +QKQ++DLEY
Sbjct: 768  QEHTEELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQEIVSYQKQIEDLEY 827

Query: 721  MLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREE 780
             LD RG GV+TMEEIQ ELS   S+KD L  ELEKLRD+Q YME D+S +Q RWH +REE
Sbjct: 828  KLDFRGLGVKTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQARWHAVREE 887

Query: 781  KVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKL 840
            K KAAN LRDV KAEE+LE L EEK QLDLD K L EA GPLSKEKE+LLSDYND+K++ 
Sbjct: 888  KAKAANLLRDVTKAEEDLERLAEEKSQLDLDVKYLTEALGPLSKEKEQLLSDYNDMKIRR 947

Query: 841  NREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIR 900
            N+EYEE AE+K N+QQE+E LLK + KI EY+DL+K ER  ++QEK+  S+S+++SC+ R
Sbjct: 948  NQEYEELAEKKRNYQQEVEALLKASYKINEYHDLKKGERLDDIQEKQRLSDSQLQSCEAR 1007

Query: 901  TDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVST 960
             +E+  EL+R KD++RNQDQ+RRNIEDNLNYR TKAKV++   EIESLEE++L IGG++ 
Sbjct: 1008 KNELAGELNRNKDLMRNQDQLRRNIEDNLNYRTTKAKVEELTREIESLEEQILNIGGIAA 1067

Query: 961  FETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLK 1020
             E E+ K L ER+RLLSE+NRC+GT+SVY+++IS+N+++LKQAQYKDIDKRHFDQLIQLK
Sbjct: 1068 VEAEIVKILRERERLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLK 1127

Query: 1021 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGA 1080
            TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQD+DYIRIHSDSEGA
Sbjct: 1128 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGA 1187

Query: 1081 GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1140
            GTRSYSYKVLMQTGD ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL
Sbjct: 1188 GTRSYSYKVLMQTGDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1247

Query: 1141 DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200
            DGPN+ESLA AL RIMEDRKGQENFQLIVITHDERFAQ+IGQRQHAEKYYRVAKDD QHS
Sbjct: 1248 DGPNSESLAGALLRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHS 1307

Query: 1201 IIEAQEIFD 1209
            IIEAQEIFD
Sbjct: 1308 IIEAQEIFD 1316

Implicated in double-strand breaks (DSBs) repair by non-homologous end joining (NHEJ). Involved in telomere maintenance. Involved in telomerase action on chromosome ends. Required during meiosis for both male and female gametophytic development, for pairing and synapsis of homologous chromosomes during the early stages of meiotic recombination, especially during the pachytene stage of the first division.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: -EC: .EC: -

>sp\|P70388\|RAD50_MOUSE DNA repair protein RAD50 OS=Mus musculus GN=Rad50 PE=1 SV=1	Back alignment and function description

>sp\|Q92878\|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1	Back alignment and function description

>sp\|Q9JIL8\|RAD50_RAT DNA repair protein RAD50 OS=Rattus norvegicus GN=Rad50 PE=1 SV=1	Back alignment and function description

>sp\|Q54CS9\|RAD50_DICDI DNA repair protein RAD50 OS=Dictyostelium discoideum GN=rad50 PE=3 SV=1	Back alignment and function description

>sp\|Q9UTJ8\|RAD50_SCHPO DNA repair protein rad50 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad50 PE=1 SV=3	Back alignment and function description

>sp\|P12753\|RAD50_YEAST DNA repair protein RAD50 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD50 PE=1 SV=1	Back alignment and function description

>sp\|Q9W252\|RAD50_DROME DNA repair protein RAD50 OS=Drosophila melanogaster GN=rad50 PE=2 SV=4	Back alignment and function description

>sp\|Q8SRK6\|RAD50_ENCCU DNA repair protein RAD50 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RAD50 PE=1 SV=1	Back alignment and function description

>sp\|C6KSQ6\|RAD50_PLAF7 Probable DNA repair protein RAD50 OS=Plasmodium falciparum (isolate 3D7) GN=PFF0285c PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1209
359477881		1316	PREDICTED: LOW QUALITY PROTEIN: DNA repa	1.0	0.918	0.826	0.0
449432386		1316	PREDICTED: DNA repair protein RAD50-like	1.0	0.918	0.794	0.0
224060335		1316	predicted protein [Populus trichocarpa]	1.0	0.918	0.799	0.0
356567935		1316	PREDICTED: DNA repair protein RAD50-like	1.0	0.918	0.741	0.0
18402837		1316	DNA repair protein RAD50 [Arabidopsis th	1.0	0.918	0.722	0.0
449518167		1088	PREDICTED: DNA repair protein RAD50-like	0.899	0.999	0.774	0.0
255563610		1256	DNA repair protein RAD50, putative [Rici	0.943	0.908	0.756	0.0
297822949		1234	hypothetical protein ARALYDRAFT_344958 [	0.924	0.905	0.664	0.0
157863716		1316	DNA repair protein Rad50 [Triticum monoc	1.0	0.918	0.631	0.0
157863718		1316	DNA repair protein Rad50 [Aegilops tausc	1.0	0.918	0.629	0.0

>gi\|359477881\|ref\|XP_002266665.2\| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2023 bits (5240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 999/1209 (82%), Positives = 1099/1209 (90%)

Query: 1    MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPL 60
            MEYKAIESVLQTINPHTGEKVCLSYRCADMDRE+PALMGVSKA+LENVIFVHQD+ANWPL
Sbjct: 108  MEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDDANWPL 167

Query: 61   QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRES 120
            QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQ LKDAAYKLRES
Sbjct: 168  QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQILKDAAYKLRES 227

Query: 121  ISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQ 180
            I QDQEKTE+LK QMQELE +IQ++D KI HTE TLKDLRK+QDQIST TA RSTLF++Q
Sbjct: 228  IEQDQEKTESLKIQMQELENNIQNVDAKIQHTEATLKDLRKLQDQISTKTAERSTLFKEQ 287

Query: 181  QKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240
            QKQYAALAEE EDTDEEL  WK  FE  +A  ES ISKLERE +D +TK  FL+Q I+ Y
Sbjct: 288  QKQYAALAEENEDTDEELNEWKTKFEERIALLESKISKLEREMDDTETKGSFLKQTINDY 347

Query: 241  TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSD 300
              EI+ L +EA  H S  NERDSTIQKLFAR+NLGSLP+ PFSNE ALNF NRI++RL D
Sbjct: 348  IWEISKLQTEAEVHSSLKNERDSTIQKLFARNNLGSLPSVPFSNEIALNFTNRIKTRLMD 407

Query: 301  LERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDS 360
            LE+DL+DKKKS E+ LK+AWD Y+DAND WK+IEAQKQAK+EIK+GILK I+EKENERDS
Sbjct: 408  LEKDLQDKKKSIEMELKVAWDRYMDANDHWKDIEAQKQAKVEIKSGILKRIEEKENERDS 467

Query: 361  FELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNRE 420
            FELQISN++LSHIDERE  +RIEVERKTNQLAEREFE NIRQKQSEL++++QKIKALNRE
Sbjct: 468  FELQISNVSLSHIDEREKNLRIEVERKTNQLAEREFESNIRQKQSELYSIEQKIKALNRE 527

Query: 421  KDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA 480
            KD++A DSEDRVKL+LKK ELENHKKKH+KI+DEYKD+IR VLKGRLP D+DLKKEITQA
Sbjct: 528  KDIMAVDSEDRVKLSLKKGELENHKKKHQKIMDEYKDRIRGVLKGRLPPDKDLKKEITQA 587

Query: 481  LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQ 540
            LRAL  EFDD++SKSREA+KEVNMLQMKI+EV +NLSK  KD+DS+KRFIESKL+SL+QQ
Sbjct: 588  LRALGIEFDDMNSKSREAEKEVNMLQMKIEEVNNNLSKLNKDMDSRKRFIESKLQSLDQQ 647

Query: 541  IFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEE 600
             FSI++Y K  D AKEKRDVQKSKYNIADGM+QMFDPFERVARAHHVCPCCERPFSAEEE
Sbjct: 648  SFSIESYMKAFDLAKEKRDVQKSKYNIADGMKQMFDPFERVARAHHVCPCCERPFSAEEE 707

Query: 601  DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNL 660
            DEFVKKQRVKAASSAEHMKVL++ESS+A+S F QLDKLRMVYEEYVK  KETIP+AEKNL
Sbjct: 708  DEFVKKQRVKAASSAEHMKVLAVESSSAESLFLQLDKLRMVYEEYVKXGKETIPLAEKNL 767

Query: 661  HELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEY 720
            +ELTEELDQKSQA DDVLGVLAQ+K DK+SVE L+QPVETADRLFQEIQ WQKQVDDLEY
Sbjct: 768  NELTEELDQKSQALDDVLGVLAQVKTDKDSVEALMQPVETADRLFQEIQTWQKQVDDLEY 827

Query: 721  MLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREE 780
             LD RGQGVR+MEEIQLEL+   +TKDNL N+LEKLRDEQRYMENDLSNIQIRWHTLREE
Sbjct: 828  KLDFRGQGVRSMEEIQLELNTLQNTKDNLHNDLEKLRDEQRYMENDLSNIQIRWHTLREE 887

Query: 781  KVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKL 840
            KVKAANTLRDVKKAEEEL+ L+EEK Q+DL EK LAEA GPLSKEKEKLLSDYNDLK KL
Sbjct: 888  KVKAANTLRDVKKAEEELDRLVEEKSQVDLHEKHLAEALGPLSKEKEKLLSDYNDLKAKL 947

Query: 841  NREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIR 900
            + EYE+QAEQK N+QQE+E LLK+ SKIKEYYD +K ER KEL+EK+S SES+++SC  R
Sbjct: 948  DFEYEQQAEQKRNYQQEVEALLKVTSKIKEYYDSKKGERLKELKEKQSLSESQLQSCDAR 1007

Query: 901  TDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVST 960
              EIL EL++ KD++RNQDQ++RNIEDNLNYR+TKA+VDK   EIE LE+R+LKIGGVS 
Sbjct: 1008 KQEILTELNKSKDLMRNQDQLKRNIEDNLNYRKTKAEVDKLTIEIELLEDRILKIGGVSA 1067

Query: 961  FETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLK 1020
             E +LGK   ER+RLLSE+NRC GT SVYQ+NIS++KIDLKQ QYKDIDKR+ DQLIQLK
Sbjct: 1068 VEVDLGKLSQERERLLSELNRCHGTTSVYQSNISKHKIDLKQTQYKDIDKRYCDQLIQLK 1127

Query: 1021 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGA 1080
            TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDID IRIHSDSEGA
Sbjct: 1128 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCIRIHSDSEGA 1187

Query: 1081 GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1140
            GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL
Sbjct: 1188 GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1247

Query: 1141 DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200
            DGPNAESLAAAL RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS
Sbjct: 1248 DGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1307

Query: 1201 IIEAQEIFD 1209
            IIEAQEIFD
Sbjct: 1308 IIEAQEIFD 1316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449432386\|ref\|XP_004133980.1\| PREDICTED: DNA repair protein RAD50-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224060335\|ref\|XP_002300148.1\| predicted protein [Populus trichocarpa] gi\|222847406\|gb\|EEE84953.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356567935\|ref\|XP_003552170.1\| PREDICTED: DNA repair protein RAD50-like [Glycine max]	Back alignment and taxonomy information

>gi|18402837|ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana] gi|57013013|sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gi|7110148|gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair protein [Arabidopsis thaliana] gi|22654997|gb|AAM98090.1| At2g31970/F22D22.28 [Arabidopsis thaliana] gi|29028758|gb|AAO64758.1| At2g31970/F22D22.28 [Arabidopsis thaliana] gi|330253520|gb|AEC08614.1| DNA repair protein RAD50 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449518167\|ref\|XP_004166115.1\| PREDICTED: DNA repair protein RAD50-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255563610\|ref\|XP_002522807.1\| DNA repair protein RAD50, putative [Ricinus communis] gi\|223538045\|gb\|EEF39658.1\| DNA repair protein RAD50, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297822949\|ref\|XP_002879357.1\| hypothetical protein ARALYDRAFT_344958 [Arabidopsis lyrata subsp. lyrata] gi\|297325196\|gb\|EFH55616.1\| hypothetical protein ARALYDRAFT_344958 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|157863716\|gb\|ABV90879.1\| DNA repair protein Rad50 [Triticum monococcum]	Back alignment and taxonomy information

>gi\|157863718\|gb\|ABV90880.1\| DNA repair protein Rad50 [Aegilops tauschii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1209
TAIR\|locus:2045437		1316	RAD50 [Arabidopsis thaliana (t	1.0	0.918	0.693	0.0
UNIPROTKB\|F1NEG1		1315	RAD50 "Uncharacterized protein	0.587	0.539	0.319	9e-135
UNIPROTKB\|Q92878		1312	RAD50 "DNA repair protein RAD5	0.966	0.890	0.282	4.4e-132
RGD\|621542		1312	Rad50 "RAD50 homolog (S. cerev	0.974	0.897	0.282	7.1e-132
UNIPROTKB\|Q9JIL8		1312	Rad50 "DNA repair protein RAD5	0.974	0.897	0.282	7.1e-132
MGI\|MGI:109292		1312	Rad50 "RAD50 homolog (S. cerev	0.968	0.892	0.277	1e-130
UNIPROTKB\|E2QT24		1314	RAD50 "Uncharacterized protein	0.971	0.893	0.279	2.2e-130
UNIPROTKB\|F6UTT0		1312	RAD50 "Uncharacterized protein	0.971	0.895	0.277	2.2e-130
UNIPROTKB\|J9P3S4		1213	RAD50 "Uncharacterized protein	0.971	0.968	0.277	2.2e-130
UNIPROTKB\|G3X6W2		1312	RAD50 "Uncharacterized protein	0.971	0.895	0.277	9.3e-130

TAIR\|locus:2045437 RAD50 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4279 (1511.3 bits), Expect = 0., P = 0.
 Identities = 839/1209 (69%), Positives = 984/1209 (81%)

Query:     1 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPL 60
             MEYKAIESVLQTINPHTGEKVCLSYRCADMDRE+PALMGVSKAILENVIFVHQDE+NWPL
Sbjct:   108 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPL 167

Query:    61 QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRES 120
             QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKT+KLKLENLQTLKDAAYKLRES
Sbjct:   168 QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRES 227

Query:   121 ISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQ 180
             I+QDQE+TE+ K QM ELE S+Q +D ++H+ E+ LKDLRK+QDQ+S  TA RSTLF++Q
Sbjct:   228 IAQDQERTESSKVQMLELETSVQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQ 287

Query:   181 QKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240
             Q+QYAAL EE EDT EELK WK+ FE  +A   + I K+ERE  D +T I  L      Y
Sbjct:   288 QRQYAALPEENEDTIEELKEWKSKFEERLALLGTKIRKMEREMVDTETTISSLHNAKTNY 347

Query:   241 TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSD 300
               EI+ L +EA AHM   NERDSTIQ +F  +NLG++P+ PFS E  LN  NRI+SRL +
Sbjct:   348 MLEISKLQTEAEAHMLLKNERDSTIQNIFFHYNLGNVPSTPFSTEVVLNLTNRIKSRLGE 407

Query:   301 LERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDS 360
             LE DL DKKKS+E AL  AWD Y+DANDRWK+IEAQK+AK EIK GI K I+EKE ERDS
Sbjct:   408 LEMDLLDKKKSNETALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKEIERDS 467

Query:   361 FELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNRE 420
             FE +IS +++   DERE ++++E+ERKT Q +ER FE  I QKQ E+++++ KIK LNRE
Sbjct:   468 FEFEISTVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRE 527

Query:   421 KDVLAGDSEDRVXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVLKGRLPLDRDLKKEITQA 480
             +DV+AGD+EDRV                           R VLKGRLP ++D+K+EI QA
Sbjct:   528 RDVMAGDAEDRVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKREIVQA 587

Query:   481 LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQ 540
             LR++  E+DDLS KSREA+KEVNMLQMKIQEV ++L KH KD +S+KR+IESKL++L Q+
Sbjct:   588 LRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQE 647

Query:   541 IFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEE 600
               +ID Y K+L+SAK+KRD +K +YN+A+GMRQMF+PFE+ AR  H CPCCER F+A+EE
Sbjct:   648 SVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEE 707

Query:   601 DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNL 660
               F+KKQRVKA+S+ EH+K L++ESSNADS FQQLDKLR V+EEY KL+ E IP+AEK L
Sbjct:   708 ASFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTL 767

Query:   661 HELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEY 720
              E TEEL QKS+A DDVLG+ AQIKADK+S+E LVQP+E ADR+FQEI  +QKQ++DLEY
Sbjct:   768 QEHTEELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQEIVSYQKQIEDLEY 827

Query:   721 MLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREE 780
              LD RG GV+TMEEIQ ELS   S+KD L  ELEKLRD+Q YME D+S +Q RWH +REE
Sbjct:   828 KLDFRGLGVKTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQARWHAVREE 887

Query:   781 KVKAANTLRDVKKAXXXXXXXXXXKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKL 840
             K KAAN LRDV KA          K QLDLD K L EA GPLSKEKE+LLSDYND+K++ 
Sbjct:   888 KAKAANLLRDVTKAEEDLERLAEEKSQLDLDVKYLTEALGPLSKEKEQLLSDYNDMKIRR 947

Query:   841 NREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFXXXXXXXXXXXXXXXXCKIR 900
             N+EYEE AE+K N+QQE+E LLK + KI EY+DL+K ER                 C+ R
Sbjct:   948 NQEYEELAEKKRNYQQEVEALLKASYKINEYHDLKKGERLDDIQEKQRLSDSQLQSCEAR 1007

Query:   901 TDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVST 960
              +E+  EL+R KD++RNQDQ+RRNIEDNLNYR TKAKV++   EIESLEE++L IGG++ 
Sbjct:  1008 KNELAGELNRNKDLMRNQDQLRRNIEDNLNYRTTKAKVEELTREIESLEEQILNIGGIAA 1067

Query:   961 FETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLK 1020
              E E+ K L ER+RLLSE+NRC+GT+SVY+++IS+N+++LKQAQYKDIDKRHFDQLIQLK
Sbjct:  1068 VEAEIVKILRERERLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLK 1127

Query:  1021 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGA 1080
             TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQD+DYIRIHSDSEGA
Sbjct:  1128 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGA 1187

Query:  1081 GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1140
             GTRSYSYKVLMQTGD ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL
Sbjct:  1188 GTRSYSYKVLMQTGDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1247

Query:  1141 DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200
             DGPN+ESLA AL RIMEDRKGQENFQLIVITHDERFAQ+IGQRQHAEKYYRVAKDD QHS
Sbjct:  1248 DGPNSESLAGALLRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHS 1307

Query:  1201 IIEAQEIFD 1209
             IIEAQEIFD
Sbjct:  1308 IIEAQEIFD 1316

GO:0004518 "nuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006281 "DNA repair" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IMP

GO:0000723 "telomere maintenance" evidence=IMP

GO:0006312 "mitotic recombination" evidence=RCA;IMP

GO:0016233 "telomere capping" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0030870 "Mre11 complex" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB\|F1NEG1 RAD50 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92878 RAD50 "DNA repair protein RAD50" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|621542 Rad50 "RAD50 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9JIL8 Rad50 "DNA repair protein RAD50" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:109292 Rad50 "RAD50 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QT24 RAD50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UTT0 RAD50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P3S4 RAD50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|G3X6W2 RAD50 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SL02	RAD50_ARATH	3, ., 6, ., -, ., -	0.7220	1.0	0.9186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_I0970	hypothetical protein (1316 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.01340066	hypothetical protein (772 aa)		•	•	•		0.933
	grail3.0028011201	hypothetical protein (424 aa)		•	•	•		0.595
	gw1.V.2541.1	hypothetical protein (1081 aa)	•	•		•		0.584
	eugene3.00020503	hypothetical protein (758 aa)		•		•		0.537
	eugene3.00280090	hypothetical protein (349 aa)		•	•	•		0.529
	gw1.XIII.413.1	annotation not avaliable (325 aa)		•		•		0.527
	eugene3.00012639	hypothetical protein (365 aa)		•	•	•		0.494
	CPE903	SubName- Full=Putative uncharacterized protein; (1205 aa)	•		•	•	•	0.433
	eugene3.00151259	hypothetical protein (342 aa)			•	•		0.428
	gw1.XI.3477.1	hypothetical protein (628 aa)	•	•		•		0.419

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1209
TIGR00606		1311	TIGR00606, rad50, rad50	1e-112
cd03240		204	cd03240, ABC_Rad50, ATP-binding cassette domain of	2e-42
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-22
cd03227		162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-11
cd00267		157	cd00267, ABC_ATPase, ATP-binding cassette transpor	5e-11
pfam13558		79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	1e-10
cd03226		205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-09
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	2e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-09
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	7e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
cd03221		144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-07
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	2e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
cd03225		211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-06
TIGR02857		529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1122		235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-06
cd03228		171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	2e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
cd03229		178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-05
TIGR01166		190	TIGR01166, cbiO, cobalt transport protein ATP-bind	4e-05
COG1136		226	COG1136, SalX, ABC-type antimicrobial peptide tran	8e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG4988		559	COG4988, CydD, ABC-type transport system involved	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1120		258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-04
COG4619		223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	5e-04
COG4987		573	COG4987, CydC, ABC-type transport system involved	6e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
COG0488		530	COG0488, Uup, ATPase components of ABC transporter	8e-04
PRK11637		428	PRK11637, PRK11637, AmiB activator; Provisional	8e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
cd03246		173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	0.001
COG4181		228	COG4181, COG4181, Predicted ABC-type transport sys	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1132		567	COG1132, MdlB, ABC-type multidrug transport system	0.002
cd03245		220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK10584		228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.003
COG4618		580	COG4618, ArpD, ABC-type protease/lipase transport	0.003
TIGR02868		530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	0.004
cd03251		234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	0.004

>gnl\|CDD\|129694 TIGR00606, rad50, rad50	Back alignment and domain information

 Score =  381 bits (979), Expect = e-112
 Identities = 329/1203 (27%), Positives = 598/1203 (49%), Gaps = 45/1203 (3%)

Query: 18   GEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSAT 77
            GEKV LS +CA++DRE+ + +GVSKA+L NVIF HQ+++NWPL +   LK+KFD+IFSAT
Sbjct: 123  GEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSAT 182

Query: 78   RYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQE 137
            RY KALE ++++ + Q Q+++ ++++L+ L+  K+ A ++R+ I+  + + E+ +  ++ 
Sbjct: 183  RYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKS 242

Query: 138  LEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEE 197
             E  +  + +++   E  L  + K+ ++I  + +R+  + +   +    + +  + TDE+
Sbjct: 243  YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQ 302

Query: 198  LKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSR 257
            L +  +N +  V ++E ++   +RE   ++ + + L Q       E   L  +A  H   
Sbjct: 303  LNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362

Query: 258  MNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALK 317
            +  RDS IQ L  R  L      PFS     NF   +  R  D  +     +   +L  K
Sbjct: 363  IRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTA--AQLCADLQSK 420

Query: 318  MAWDSYLDANDRWKNIEAQKQA-KMEIKAGILKHIKEKENERDSFELQISNLNLSHIDER 376
                              Q+QA ++  +   L    E + E    + +     +  + + 
Sbjct: 421  ER--------------LKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL 466

Query: 377  ENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLAL 436
            E      +     +L + E E++  +K S    + +++K+L  EK   A       KL  
Sbjct: 467  EGSSD-RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEK---ADLDRKLRKLDQ 522

Query: 437  KKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA-----LRALLTEFDDL 491
            +  +L +H     ++    KDK+    + R    R   +  +        + L       
Sbjct: 523  EMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSK 582

Query: 492  SSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIF---SIDTYQ 548
            S +  +    +  L  ++  +  N +    +++SK    E +L S   ++F        +
Sbjct: 583  SKEINQTRDRLAKLNKELASLEQNKNHINNELESK----EEQLSSYEDKLFDVCGSQDEE 638

Query: 549  KVLDSAKEKRDVQKSKYNIADGMRQMFDPF--ERVARAHHVCPCCERPFSAEEE-DEFVK 605
              L+  KE+ +    +  +  G   ++  F  +        CP C+R F  E E  EF+ 
Sbjct: 639  SDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFIS 698

Query: 606  KQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTE 665
              + K   + + +K    E    +    ++  L    +  + L ++ IP     L ++  
Sbjct: 699  DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758

Query: 666  ELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSR 725
            ++ +     ++   +L  I  ++ES +V +  V   +R   E++  ++++      L   
Sbjct: 759  DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG- 817

Query: 726  GQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAA 785
                RT++++  E        D + +++E  R   +  +  + +++ + + L+ EK++  
Sbjct: 818  SDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877

Query: 786  NTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYE 845
              L+  ++ EE+L  L  E   L  + K   E   PL    EK   +  +  +       
Sbjct: 878  TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE-KEELISSKETSN 936

Query: 846  EQAEQKIN-FQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEI 904
            ++A+ K+N  +++++ +      I+      KD+  K+ + + +   ++++ C+   ++I
Sbjct: 937  KKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKI 996

Query: 905  LVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETE 964
              ++   +  +  Q    R ++DNL  R+ + ++ +   E++   + + ++  V   + E
Sbjct: 997  NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ-VLQMKQE 1055

Query: 965  LGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEM 1024
              K     D +        G    Y+  I   K +L++ Q++D ++++ + +I ++TTE+
Sbjct: 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTEL 1115

Query: 1025 ANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSD-----SEG 1079
             NKDLD YY  LD+A+M+FH+MKMEEINKIIR+LW+ TYRGQDI+YI I SD     S  
Sbjct: 1116 VNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSAS 1175

Query: 1080 AGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTN 1139
               R+Y+Y+V+M  GD  L+MRGRCSAGQKVLASLIIRLALAETFCLNCGI+ALDEPTTN
Sbjct: 1176 DKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTN 1235

Query: 1140 LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199
            LD  N ESLA AL  I++ R  Q NFQL+VITHDE F +L+G+ ++ EK+YR+ K++ Q 
Sbjct: 1236 LDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQC 1295

Query: 1200 SII 1202
            S I
Sbjct: 1296 SEI 1298

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl\|CDD\|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins	Back alignment and domain information

>gnl\|CDD\|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain	Back alignment and domain information

>gnl\|CDD\|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit	Back alignment and domain information

>gnl\|CDD\|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	Back alignment and domain information

>gnl\|CDD\|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems	Back alignment and domain information

>gnl\|CDD\|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit	Back alignment and domain information

>gnl\|CDD\|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|236942 PRK11637, PRK11637, AmiB activator; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C	Back alignment and domain information

>gnl\|CDD\|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>gnl\|CDD\|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>gnl\|CDD\|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1209
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	100.0
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	100.0
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	100.0
KOG0996		1293	consensus Structural maintenance of chromosome pro	100.0
PRK02224		880	chromosome segregation protein; Provisional	100.0
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	100.0
PRK03918		880	chromosome segregation protein; Provisional	100.0
PRK01156		895	chromosome segregation protein; Provisional	100.0
KOG0933		1174	consensus Structural maintenance of chromosome pro	100.0
KOG0018		1141	consensus Structural maintenance of chromosome pro	100.0
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	100.0
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	100.0
KOG0964		1200	consensus Structural maintenance of chromosome pro	100.0
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	100.0
TIGR00618		1042	sbcc exonuclease SbcC. This family is based on the	99.97
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	99.97
PRK10246		1047	exonuclease subunit SbcC; Provisional	99.97
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	99.91
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.9
PRK04863		1486	mukB cell division protein MukB; Provisional	99.88
COG1135		339	AbcC ABC-type metal ion transport system, ATPase c	99.88
COG1117		253	PstB ABC-type phosphate transport system, ATPase c	99.85
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	99.84
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.84
PF13514		1111	AAA_27: AAA domain	99.84
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.84
COG1124		252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.82
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	99.82
COG2884		223	FtsE Predicted ATPase involved in cell division [C	99.81
COG1127		263	Ttg2A ABC-type transport system involved in resist	99.81
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.8
COG4598		256	HisP ABC-type histidine transport system, ATPase c	99.8
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.8
COG0444		316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.79
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	99.79
COG3638		258	ABC-type phosphate/phosphonate transport system, A	99.79
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.79
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	99.78
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.77
COG1121		254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.76
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	99.76
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	99.76
COG1123		539	ATPase components of various ABC-type transport sy	99.75
PHA02562		562	46 endonuclease subunit; Provisional	99.75
COG1123		539	ATPase components of various ABC-type transport sy	99.75
COG1116		248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.73
COG1118		345	CysA ABC-type sulfate/molybdate transport systems,	99.73
TIGR02314		343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.73
COG4172		534	ABC-type uncharacterized transport system, duplica	99.73
COG4172		534	ABC-type uncharacterized transport system, duplica	99.73
COG4555		245	NatA ABC-type Na+ transport system, ATPase compone	99.72
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	99.72
PRK13651		305	cobalt transporter ATP-binding subunit; Provisiona	99.7
COG4181		228	Predicted ABC-type transport system involved in ly	99.69
PRK13537		306	nodulation ABC transporter NodI; Provisional	99.69
COG3840		231	ThiQ ABC-type thiamine transport system, ATPase co	99.69
COG4161		242	ArtP ABC-type arginine transport system, ATPase co	99.69
COG3842		352	PotA ABC-type spermidine/putrescine transport syst	99.69
TIGR01188		302	drrA daunorubicin resistance ABC transporter ATP-b	99.68
COG0411		250	LivG ABC-type branched-chain amino acid transport	99.68
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	99.68
PRK15079		331	oligopeptide ABC transporter ATP-binding protein O	99.68
PRK11650		356	ugpC glycerol-3-phosphate transporter ATP-binding	99.68
PRK11308		327	dppF dipeptide transporter ATP-binding subunit; Pr	99.68
cd03261		235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.68
PRK13637		287	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK13643		288	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK13536		340	nodulation factor exporter subunit NodI; Provision	99.67
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	99.67
PRK13631		320	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK11432		351	fbpC ferric transporter ATP-binding subunit; Provi	99.67
TIGR03258		362	PhnT 2-aminoethylphosphonate ABC transport system,	99.67
PRK11022		326	dppD dipeptide transporter ATP-binding subunit; Pr	99.67
PRK09536		402	btuD corrinoid ABC transporter ATPase; Reviewed	99.67
PRK11153		343	metN DL-methionine transporter ATP-binding subunit	99.67
PRK09473		330	oppD oligopeptide transporter ATP-binding componen	99.66
TIGR00960		216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.66
PRK10851		353	sulfate/thiosulfate transporter subunit; Provision	99.66
PRK13634		290	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.66
TIGR03265		353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.66
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.66
PRK09452		375	potA putrescine/spermidine ABC transporter ATPase	99.65
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.65
TIGR01288		303	nodI ATP-binding ABC transporter family nodulation	99.65
PRK13646		286	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03219		236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.65
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	99.65
PRK13647		274	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
COG4148		352	ModC ABC-type molybdate transport system, ATPase c	99.65
PRK13641		287	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	99.64
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	99.64
COG4559		259	ABC-type hemin transport system, ATPase component	99.64
PRK11607		377	potG putrescine transporter ATP-binding subunit; P	99.64
PRK11000		369	maltose/maltodextrin transporter ATP-binding prote	99.64
cd03268		208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.64
cd03297		214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.64
TIGR01187		325	potA spermidine/putrescine ABC transporter ATP-bin	99.64
cd03260		227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.64
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.64
COG1137		243	YhbG ABC-type (unclassified) transport system, ATP	99.64
PRK15093		330	antimicrobial peptide ABC transporter ATP-binding	99.64
PRK13638		271	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13636		283	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
cd03265		220	ABC_DrrA DrrA is the ATP-binding protein component	99.63
cd03235		213	ABC_Metallic_Cations ABC component of the metal-ty	99.63
PRK10619		257	histidine/lysine/arginine/ornithine transporter su	99.63
PRK13650		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
cd03264		211	ABC_drug_resistance_like ABC-type multidrug transp	99.63
PRK11264		250	putative amino-acid ABC transporter ATP-binding pr	99.63
TIGR02142		354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.63
PRK13652		277	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
cd03266		218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.63
PRK11831		269	putative ABC transporter ATP-binding protein YrbF;	99.63
PRK14250		241	phosphate ABC transporter ATP-binding protein; Pro	99.63
cd03256		241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.63
PRK13649		280	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
TIGR03522		301	GldA_ABC_ATP gliding motility-associated ABC trans	99.63
PRK11144		352	modC molybdate transporter ATP-binding protein; Pr	99.63
cd03225		211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.62
cd03293		220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.62
PRK09493		240	glnQ glutamine ABC transporter ATP-binding protein	99.62
PRK11247		257	ssuB aliphatic sulfonates transport ATP-binding su	99.62
cd03258		233	ABC_MetN_methionine_transporter MetN (also known a	99.62
cd03294		269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.62
cd03298		211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.62
TIGR02315		243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.62
PRK14268		258	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK14242		253	phosphate transporter ATP-binding protein; Provisi	99.62
cd03218		232	ABC_YhbG The ABC transporters belonging to the Yhb	99.62
cd03296		239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.62
PRK13639		275	cbiO cobalt transporter ATP-binding subunit; Provi	99.62
PRK10908		222	cell division protein FtsE; Provisional	99.62
PRK04863		1486	mukB cell division protein MukB; Provisional	99.62
TIGR01184		230	ntrCD nitrate transport ATP-binding subunits C and	99.62
TIGR00972		247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.62
PRK14257		329	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK13645		289	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK10771		232	thiQ thiamine transporter ATP-binding subunit; Pro	99.61
PRK14273		254	phosphate ABC transporter ATP-binding protein; Pro	99.61
cd03224		222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.61
PRK11231		255	fecE iron-dicitrate transporter ATP-binding subuni	99.61
PRK14245		250	phosphate ABC transporter ATP-binding protein; Pro	99.61
COG4152		300	ABC-type uncharacterized transport system, ATPase	99.61
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.61
cd03269		210	ABC_putative_ATPase This subfamily is involved in	99.61
TIGR03410		230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.61
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	99.6
COG4604		252	CeuD ABC-type enterochelin transport system, ATPas	99.6
PRK11629		233	lolD lipoprotein transporter ATP-binding subunit;	99.6
PRK11614		237	livF leucine/isoleucine/valine transporter ATP-bin	99.6
PRK14269		246	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14235		267	phosphate transporter ATP-binding protein; Provisi	99.6
TIGR02673		214	FtsE cell division ATP-binding protein FtsE. This	99.6
cd03292		214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.6
COG4619		223	ABC-type uncharacterized transport system, ATPase	99.6
cd03295		242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.6
PRK09984		262	phosphonate/organophosphate ester transporter subu	99.6
TIGR03005		252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.6
cd03263		220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.6
PRK13644		274	cbiO cobalt transporter ATP-binding subunit; Provi	99.6
PRK14248		268	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK10895		241	lipopolysaccharide ABC transporter ATP-binding pro	99.6
PRK14259		269	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14274		259	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14244		251	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK11124		242	artP arginine transporter ATP-binding subunit; Pro	99.59
PRK14258		261	phosphate ABC transporter ATP-binding protein; Pro	99.59
TIGR03411		242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.59
PRK13548		258	hmuV hemin importer ATP-binding subunit; Provision	99.59
PRK10575		265	iron-hydroxamate transporter ATP-binding subunit;	99.59
PRK14247		250	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK10744		260	pstB phosphate transporter ATP-binding protein; Pr	99.59
PRK13635		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.59
TIGR01277		213	thiQ thiamine ABC transporter, ATP-binding protein	99.59
PRK14270		251	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK10253		265	iron-enterobactin transporter ATP-binding protein;	99.59
PRK03695		248	vitamin B12-transporter ATPase; Provisional	99.59
PRK11248		255	tauB taurine transporter ATP-binding subunit; Prov	99.59
cd03262		213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.59
TIGR02769		265	nickel_nikE nickel import ATP-binding protein NikE	99.59
PRK14275		286	phosphate ABC transporter ATP-binding protein; Pro	99.58
TIGR02211		221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.58
PRK14240		250	phosphate transporter ATP-binding protein; Provisi	99.58
PRK13633		280	cobalt transporter ATP-binding subunit; Provisiona	99.58
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.58
cd03289		275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.58
PRK14265		274	phosphate ABC transporter ATP-binding protein; Pro	99.58
cd03301		213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.58
PRK10869		553	recombination and repair protein; Provisional	99.58
PRK14239		252	phosphate transporter ATP-binding protein; Provisi	99.58
PRK14249		251	phosphate ABC transporter ATP-binding protein; Pro	99.57
TIGR02770		230	nickel_nikD nickel import ATP-binding protein NikD	99.57
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.57
PRK13640		282	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
PRK10261		623	glutathione transporter ATP-binding protein; Provi	99.57
PRK14238		271	phosphate transporter ATP-binding protein; Provisi	99.57
TIGR03873		256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.57
PRK14267		253	phosphate ABC transporter ATP-binding protein; Pro	99.57
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.57
PRK14237		267	phosphate transporter ATP-binding protein; Provisi	99.57
PRK14243		264	phosphate transporter ATP-binding protein; Provisi	99.57
cd03220		224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.56
cd03245		220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.56
PRK14251		251	phosphate ABC transporter ATP-binding protein; Pro	99.56
cd03252		237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.56
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	99.56
PRK11701		258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.56
PRK14256		252	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK13642		277	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
PRK13545		549	tagH teichoic acids export protein ATP-binding sub	99.56
PRK14253		249	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK10584		228	putative ABC transporter ATP-binding protein YbbA;	99.56
PRK14260		259	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14255		252	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14262		250	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14263		261	phosphate ABC transporter ATP-binding protein; Pro	99.56
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.56
PRK14241		258	phosphate transporter ATP-binding protein; Provisi	99.56
PRK13632		271	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
cd03300		232	ABC_PotA_N PotA is an ABC-type transporter and the	99.56
TIGR03771		223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.56
PRK14254		285	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14271		276	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14236		272	phosphate transporter ATP-binding protein; Provisi	99.56
PRK13547		272	hmuV hemin importer ATP-binding subunit; Provision	99.55
PRK14272		252	phosphate ABC transporter ATP-binding protein; Pro	99.55
cd03216		163	ABC_Carb_Monos_I This family represents the domain	99.55
PRK11300		255	livG leucine/isoleucine/valine transporter ATP-bin	99.55
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	99.55
PRK14261		253	phosphate ABC transporter ATP-binding protein; Pro	99.55
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.55
TIGR02323		253	CP_lyasePhnK phosphonate C-P lyase system protein	99.55
PRK10418		254	nikD nickel transporter ATP-binding protein NikD;	99.55
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.55
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	99.55
cd03257		228	ABC_NikE_OppD_transporters The ABC transporter sub	99.55
cd03246		173	ABCC_Protease_Secretion This family represents the	99.55
COG4525		259	TauB ABC-type taurine transport system, ATPase com	99.54
PRK13648		269	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK14266		250	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK15112		267	antimicrobial peptide ABC system ATP-binding prote	99.54
cd03237		246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.54
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	99.54
COG4987		573	CydC ABC-type transport system involved in cytochr	99.54
PRK10261		623	glutathione transporter ATP-binding protein; Provi	99.54
COG4988		559	CydD ABC-type transport system involved in cytochr	99.54
PRK15056		272	manganese/iron transporter ATP-binding protein; Pr	99.54
cd03267		236	ABC_NatA_like Similar in sequence to NatA, this is	99.54
TIGR03740		223	galliderm_ABC gallidermin-class lantibiotic protec	99.54
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.54
TIGR01978		243	sufC FeS assembly ATPase SufC. SufC is part of the	99.54
PRK02224		880	chromosome segregation protein; Provisional	99.53
PRK14264		305	phosphate ABC transporter ATP-binding protein; Pro	99.53
cd03251		234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.53
COG0488		530	Uup ATPase components of ABC transporters with dup	99.53
PRK14246		257	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	99.53
cd03254		229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.53
cd03369		207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.53
PRK09544		251	znuC high-affinity zinc transporter ATPase; Review	99.53
TIGR00968		237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.53
cd03234		226	ABCG_White The White subfamily represents ABC tran	99.52
cd03240		204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.52
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	99.52
PRK13546		264	teichoic acids export protein ATP-binding subunit;	99.52
PRK10247		225	putative ABC transporter ATP-binding protein YbbL;	99.52
TIGR01166		190	cbiO cobalt transport protein ATP-binding subunit.	99.52
PRK10938		490	putative molybdenum transport ATP-binding protein	99.52
CHL00131		252	ycf16 sulfate ABC transporter protein; Validated	99.52
PRK13543		214	cytochrome c biogenesis protein CcmA; Provisional	99.52
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	99.52
cd03217		200	ABC_FeS_Assembly ABC-type transport system involve	99.52
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	99.51
cd03299		235	ABC_ModC_like Archeal protein closely related to M	99.51
PRK09580		248	sufC cysteine desulfurase ATPase component; Review	99.51
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	99.51
cd03215		182	ABC_Carb_Monos_II This family represents domain II	99.51
cd03244		221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.51
PRK10419		268	nikE nickel transporter ATP-binding protein NikE;	99.51
TIGR03608		206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.51
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	99.51
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	99.51
PRK14252		265	phosphate ABC transporter ATP-binding protein; Pro	99.5
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	99.5
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	99.5
PRK13538		204	cytochrome c biogenesis protein CcmA; Provisional	99.5
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	99.5
cd03232		192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.49
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	99.49
cd03270		226	ABC_UvrA_I The excision repair protein UvrA domain	99.49
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	99.49
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	99.49
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	99.49
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.49
cd03248		226	ABCC_TAP TAP, the Transporter Associated with Anti	99.49
cd03249		238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.49
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	99.49
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.49
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	99.48
TIGR02982		220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.48
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	99.48
cd03231		201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.48
KOG0964		1200	consensus Structural maintenance of chromosome pro	99.48
PRK13409		590	putative ATPase RIL; Provisional	99.48
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	99.48
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	99.48
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	99.48
KOG0062		582	consensus ATPase component of ABC transporters wit	99.48
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.48
KOG0979		1072	consensus Structural maintenance of chromosome pro	99.48
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	99.47
cd03253		236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.47
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	99.47
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.47
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	99.47
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.47
KOG0057		591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.47
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.47
COG4586		325	ABC-type uncharacterized transport system, ATPase	99.46
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	99.46
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	99.46
COG0410		237	LivF ABC-type branched-chain amino acid transport	99.46
cd03278		197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.45
TIGR02324		224	CP_lyasePhnL phosphonate C-P lyase system protein	99.45
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.45
cd03271		261	ABC_UvrA_II The excision repair protein UvrA domai	99.45
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	99.45
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.45
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	99.44
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	99.44
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	99.44
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	99.44
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.44
COG4107		258	PhnK ABC-type phosphonate transport system, ATPase	99.44
PRK13539		207	cytochrome c biogenesis protein CcmA; Provisional	99.44
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	99.43
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	99.43
cd03236		255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.43
PRK13540		200	cytochrome c biogenesis protein CcmA; Provisional	99.43
PRK11147		635	ABC transporter ATPase component; Reviewed	99.43
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	99.43
COG4674		249	Uncharacterized ABC-type transport system, ATPase	99.43
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.43
PRK15064		530	ABC transporter ATP-binding protein; Provisional	99.42
PRK11147		635	ABC transporter ATPase component; Reviewed	99.41
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.41
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.41
cd03233		202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.41
PRK15064		530	ABC transporter ATP-binding protein; Provisional	99.4
cd03288		257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.4
PLN03211		659	ABC transporter G-25; Provisional	99.4
TIGR01189		198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.4
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.4
cd03291		282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.4
PRK10938		490	putative molybdenum transport ATP-binding protein	99.4
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.4
PLN03073		718	ABC transporter F family; Provisional	99.39
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.39
PLN03073		718	ABC transporter F family; Provisional	99.39
COG0488		530	Uup ATPase components of ABC transporters with dup	99.39
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	99.38
COG1101		263	PhnK ABC-type uncharacterized transport system, AT	99.38
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	99.37
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	99.37
PF02463		220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.37
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	99.37
cd03279		213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.37
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.37
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	99.36
KOG0062		582	consensus ATPase component of ABC transporters wit	99.36
cd03290		218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.36
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	99.36
PLN03232		1495	ABC transporter C family member; Provisional	99.36
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	99.36
PLN03130		1622	ABC transporter C family member; Provisional	99.35
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	99.35
cd03250		204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.35
PRK01156		895	chromosome segregation protein; Provisional	99.34
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.34
PRK03918		880	chromosome segregation protein; Provisional	99.34
PRK13409		590	putative ATPase RIL; Provisional	99.34
COG4778		235	PhnL ABC-type phosphonate transport system, ATPase	99.34
COG3845		501	ABC-type uncharacterized transport systems, ATPase	99.34
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.33
cd03275		247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.33
PRK10522		547	multidrug transporter membrane component/ATP-bindi	99.32
TIGR00955		617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.32
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.32
PRK10535		648	macrolide transporter ATP-binding /permease protei	99.32
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	99.32
PTZ00243		1560	ABC transporter; Provisional	99.31
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.31
cd03273		251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.31
COG0396		251	sufC Cysteine desulfurase activator ATPase [Posttr	99.28
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.27
TIGR00630		924	uvra excinuclease ABC, A subunit. This family is b	99.25
KOG0927		614	consensus Predicted transporter (ABC superfamily)	99.24
COG4133		209	CcmA ABC-type transport system involved in cytochr	99.24
cd03239		178	ABC_SMC_head The structural maintenance of chromos	99.24
KOG0933		1174	consensus Structural maintenance of chromosome pro	99.23
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.23
PRK00349		943	uvrA excinuclease ABC subunit A; Reviewed	99.23
COG4167		267	SapF ABC-type antimicrobial peptide transport syst	99.22
PLN03140		1470	ABC transporter G family member; Provisional	99.22
cd03272		243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.21
COG5265		497	ATM1 ABC-type transport system involved in Fe-S cl	99.2
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.2
cd03276		198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.2
KOG0059		885	consensus Lipid exporter ABCA1 and related protein	99.18
PLN03232		1495	ABC transporter C family member; Provisional	99.18
PRK00349		943	uvrA excinuclease ABC subunit A; Reviewed	99.18
PLN03130		1622	ABC transporter C family member; Provisional	99.17
cd03274		212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.17
KOG0056		790	consensus Heavy metal exporter HMT1, ABC superfami	99.16
COG4136		213	ABC-type uncharacterized transport system, ATPase	99.16
KOG0927		614	consensus Predicted transporter (ABC superfamily)	99.16
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	99.15
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.15
TIGR00630		924	uvra excinuclease ABC, A subunit. This family is b	99.15
cd03277		213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.15
PRK00635		1809	excinuclease ABC subunit A; Provisional	99.13
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.13
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.13
KOG0066		807	consensus eIF2-interacting protein ABC50 (ABC supe	99.12
PRK00635		1809	excinuclease ABC subunit A; Provisional	99.12
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	99.12
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.11
cd03241		276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.11
PTZ00243		1560	ABC transporter; Provisional	99.11
PLN03140		1470	ABC transporter G family member; Provisional	99.09
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	99.08
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.06
COG0497		557	RecN ATPase involved in DNA repair [DNA replicatio	99.05
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.05
KOG0061		613	consensus Transporter, ABC superfamily (Breast can	99.05
cd03227		162	ABC_Class2 ABC-type Class 2 contains systems invol	99.01
COG4170		330	SapD ABC-type antimicrobial peptide transport syst	99.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.99
KOG0018		1141	consensus Structural maintenance of chromosome pro	98.93
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.93
KOG0054		1381	consensus Multidrug resistance-associated protein/	98.89
PHA02562		562	46 endonuclease subunit; Provisional	98.88
COG4138		248	BtuD ABC-type cobalamin transport system, ATPase c	98.87
KOG0066		807	consensus eIF2-interacting protein ABC50 (ABC supe	98.85
PF13558		90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.83
PRK04778		569	septation ring formation regulator EzrA; Provision	98.83
PRK00064		361	recF recombination protein F; Reviewed	98.83
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	98.79
COG4178		604	ABC-type uncharacterized transport system, permeas	98.78
KOG0054		1381	consensus Multidrug resistance-associated protein/	98.78
cd03280		200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.73
cd03242		270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.67
COG3845		501	ABC-type uncharacterized transport systems, ATPase	98.66
PF13166		712	AAA_13: AAA domain	98.65
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	98.62
TIGR00611		365	recf recF protein. All proteins in this family for	98.57
COG0178		935	UvrA Excinuclease ATPase subunit [DNA replication,	98.57
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	98.49
KOG0060		659	consensus Long-chain acyl-CoA transporter, ABC sup	98.47
COG4717		984	Uncharacterized conserved protein [Function unknow	98.42
cd03285		222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.42
COG0178		935	UvrA Excinuclease ATPase subunit [DNA replication,	98.35
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.34
COG2401		593	ABC-type ATPase fused to a predicted acetyltransfe	98.31
cd03243		202	ABC_MutS_homologs The MutS protein initiates DNA m	98.31
PRK04778		569	septation ring formation regulator EzrA; Provision	98.27
KOG2355		291	consensus Predicted ABC-type transport, ATPase com	98.22
KOG0065		1391	consensus Pleiotropic drug resistance proteins (PD	98.21
smart00534		185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.19
COG4615		546	PvdE ABC-type siderophore export system, fused ATP	98.17
PF00005		137	ABC_tran: ABC transporter This structure is on hol	98.15
KOG0063		592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.15
KOG0063		592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.14
PRK14079		349	recF recombination protein F; Provisional	98.14
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.12
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.11
KOG0064		728	consensus Peroxisomal long-chain acyl-CoA transpor	98.11
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.1
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	98.05
cd03282		204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.02
PF13304		303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.02
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.99
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.97
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	97.97
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.96
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.96
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.95
cd03284		216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.91
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	97.91
COG4694		758	Uncharacterized protein conserved in bacteria [Fun	97.89
PRK00409		782	recombination and DNA strand exchange inhibitor pr	97.84
cd03283		199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.83
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.78
COG3910		233	Predicted ATPase [General function prediction only	97.76
PF13175		415	AAA_15: AAA ATPase domain	97.73
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.73
cd03281		213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.62
COG4913		1104	Uncharacterized protein conserved in bacteria [Fun	97.61

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=7.2e-128  Score=1142.56  Aligned_cols=1179  Identities=38%  Similarity=0.550  Sum_probs=1080.0

Q ss_pred             CcccccchheeeccCCCCccccccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhH
Q 000957            1 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYT   80 (1209)
Q Consensus         1 ~~~ktl~~~l~~~~~~~g~~~~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~   80 (1209)
                      ++||||||+|+.++ + |+++|+|+||+|+|++||.+||||+|||+||||||||||+||||||+.||++||+||++|+|+
T Consensus       107 ~~~ktles~~~~~~-~-g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~  184 (1294)
T KOG0962|consen  107 MEFKTLESVIWAIN-D-GDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYT  184 (1294)
T ss_pred             HHHHHHhhhheeee-c-CccccccchhhhhhHHHHHhcCCcHHHHhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            47999999999996 6 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000957           81 KALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLR  160 (1209)
Q Consensus        81 kale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~  160 (1209)
                      ||+|+|+++|+++..++|.++..++|++..|+++..++..+.....++...++++.+++.++.+....+.+++....++.
T Consensus       185 KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~  264 (1294)
T KOG0962|consen  185 KALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE  264 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957          161 KMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY  240 (1209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (1209)
                      +...++..+..++..+.+++..+...+...+++++.++.+...+|...+..++..+..++.++.++..+...+......+
T Consensus       265 k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~  344 (1294)
T KOG0962|consen  265 KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTEL  344 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999976789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957          241 TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAW  320 (1209)
Q Consensus       241 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (1209)
                      ..+.|.++++...|+.....++.++..++..+.+.++...+++.....+|...+...+......+...........+.+.
T Consensus       345 ~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~  424 (1294)
T KOG0962|consen  345 DLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNAL  424 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999999999988888877877767778888888888899999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 000957          321 DSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINI  400 (1209)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i  400 (1209)
                      .....++.....+.........-..   .........+...+..  ...+..+..++..++..+..+.+.....+....|
T Consensus       425 ~~~~~~~~~~~~l~~~~~~~~~~~~---~E~k~l~~~~~~~e~s--~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i  499 (1294)
T KOG0962|consen  425 DLIKEITDREVSLEAQKRIKDEIKK---LESKGLKDKSFQYEDS--TDDLKKLDERLKEAERLLESAEKNNDELALKEKI  499 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHhhhh--HhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            8888888777766653332222221   1222222222222222  4458888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000957          401 RQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA  480 (1209)
Q Consensus       401 ~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  480 (1209)
                      ...+..+..++..+..++..+..++..+..++++.++.+.+..+...+..+...+.+.+....+-.+.    ....++.+
T Consensus       500 ~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~----~~~~le~~  575 (1294)
T KOG0962|consen  500 AEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLT----NDRSLEKE  575 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCcc----chhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998777766553333    22677888


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000957          481 LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLS-KHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRD  559 (1209)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~  559 (1209)
                      +..+...+.........++.....++.........+. .....+.....       .+...|+.++.|.+.|+.++..+.
T Consensus       576 ~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~-------~lk~~sgt~~~~~~~le~l~~eie  648 (1294)
T KOG0962|consen  576 LHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEF-------FLKDESGTIDEYLDLLERLKGEIE  648 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHhhccchhhHHHHHHHHHHHHH
Confidence            8899999999999999988888888888888777776 34344444444       444667667999999999999999


Q ss_pred             HHHhhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhH
Q 000957          560 VQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLR  639 (1209)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  639 (1209)
                      ..+.+++++.+...||.+|++.+...+|||+|.|.|..++...|..++...+...|+.+......+......+..+..+.
T Consensus       649 ~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~  728 (1294)
T KOG0962|consen  649 KARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLK  728 (1294)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999977755899999999999999999999999999988899999999


Q ss_pred             hHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000957          640 MVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLE  719 (1209)
Q Consensus       640 ~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~l~  719 (1209)
                      |....+.++.+..+|.++.++.....++..+....+.....++.+......+..+..++..+.++..++.....+++.+.
T Consensus       729 ~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~  808 (1294)
T KOG0962|consen  729 PTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELV  808 (1294)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99998877766899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000957          720 YMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELE  799 (1209)
Q Consensus       720 ~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~  799 (1209)
                      +.+.++.....++.+++.+...+..++..++.++..++.........++.+....+.++.....+...+....++..++.
T Consensus       809 s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~  888 (1294)
T KOG0962|consen  809 SELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIE  888 (1294)
T ss_pred             HhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99976332688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Q 000957          800 HLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDER  879 (1209)
Q Consensus       800 ~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~  879 (1209)
                      ++.+.+......+..+...+.++...+..+.....+...+.+..+..++..++.++..++.+..+..-...+...+..  
T Consensus       889 ~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~--  966 (1294)
T KOG0962|consen  889 ELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFD--  966 (1294)
T ss_pred             HHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh--
Confidence            999999999999999999999999999999999999999988877777888888888888888877776666553211  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 000957          880 FKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVS  959 (1209)
Q Consensus       880 l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~  959 (1209)
                        ...      ...+..+...+......+....+.++++...++|+.||+.|+.+...+.++..++..++.++...+. .
T Consensus       967 --~~~------~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~-~ 1037 (1294)
T KOG0962|consen  967 --DLR------IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADI-K 1037 (1294)
T ss_pred             --hhc------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence              111      5667777888888889999999999999999999999999999999999999999999999999996 8


Q ss_pred             cHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000957          960 TFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKA 1039 (1209)
Q Consensus       960 ~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~ 1039 (1209)
                      .+.+++..|...+..+.++.+.+.|+++++..++..++.+|..++|++++++|++++|+++|+.+.+.||.+|+.+||.+
T Consensus      1038 ~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~A 1117 (1294)
T KOG0962|consen 1038 SVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKA 1117 (1294)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHH
Q 000957         1040 LMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus      1040 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
                      +|.||+++|+.||++|..+|+.+|.|+++++|.|.++..+  .++++|+|+|||..|+.+.+|+|+||+|||+|||||||
T Consensus      1118 im~fHs~KMeeiN~iI~elW~~tYrG~Did~IrIrsD~~~s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsliIR 1197 (1294)
T KOG0962|consen 1118 IMQFHSMKMEEINRIIRELWRKTYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIR 1197 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCcceEEEeeccccccccccccceeEEEEechHHHHhccCccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776  77899999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957         1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus      1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
                      +|||.+||.+||+|+|||||++||..|+.+|+..|..||..|+.+.+||+||||||..|+..++...++.++|+|.++.+
T Consensus      1198 LALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd~~ 1277 (1294)
T KOG0962|consen 1198 LALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKDES 1277 (1294)
T ss_pred             HHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeecccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccc
Q 000957         1198 QHSIIEAQEIF 1208 (1209)
Q Consensus      1198 ~~s~~~~~~~~ 1208 (1209)
                      +.|.|++.++.
T Consensus      1278 ~~s~i~~~~~~ 1288 (1294)
T KOG0962|consen 1278 QISMIVKHSIY 1288 (1294)
T ss_pred             hcceeeeecCc
Confidence            99999887764

>TIGR00606 rad50 rad50	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR00618 sbcc exonuclease SbcC	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PRK13651 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK13537 nodulation ABC transporter NodI; Provisional	Back alignment and domain information

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	Back alignment and domain information

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit	Back alignment and domain information

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional	Back alignment and domain information

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13536 nodulation factor exporter subunit NodI; Provisional	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT	Back alignment and domain information

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed	Back alignment and domain information

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional	Back alignment and domain information

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein	Back alignment and domain information

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional	Back alignment and domain information

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI	Back alignment and domain information

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance	Back alignment and domain information

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB	Back alignment and domain information

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit	Back alignment and domain information

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin	Back alignment and domain information

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters	Back alignment and domain information

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional	Back alignment and domain information

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component	Back alignment and domain information

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional	Back alignment and domain information

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake	Back alignment and domain information

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional	Back alignment and domain information

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system	Back alignment and domain information

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA	Back alignment and domain information

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively	Back alignment and domain information

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional	Back alignment and domain information

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport	Back alignment and domain information

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea	Back alignment and domain information

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP	Back alignment and domain information

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14242 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids	Back alignment and domain information

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import	Back alignment and domain information

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10908 cell division protein FtsE; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D	Back alignment and domain information

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids	Back alignment and domain information

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity	Back alignment and domain information

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14235 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR02673 FtsE cell division ATP-binding protein FtsE	Back alignment and domain information

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane	Back alignment and domain information

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment	Back alignment and domain information

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional	Back alignment and domain information

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds	Back alignment and domain information

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD	Back alignment and domain information

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK03695 vitamin B12-transporter ATPase; Provisional	Back alignment and domain information

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively	Back alignment and domain information

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE	Back alignment and domain information

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein	Back alignment and domain information

>PRK14240 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13633 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2	Back alignment and domain information

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>PRK14239 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14238 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PRK14237 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14243 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export	Back alignment and domain information

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters	Back alignment and domain information

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional	Back alignment and domain information

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>PRK14241 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D	Back alignment and domain information

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit	Back alignment and domain information

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14236 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK	Back alignment and domain information

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional	Back alignment and domain information

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake	Back alignment and domain information

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>TIGR01978 sufC FeS assembly ATPase SufC	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein	Back alignment and domain information

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)	Back alignment and domain information

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed	Back alignment and domain information

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors	Back alignment and domain information

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional	Back alignment and domain information

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>CHL00131 ycf16 sulfate ABC transporter protein; Validated	Back alignment and domain information

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>cd03299 ABC_ModC_like Archeal protein closely related to ModC	Back alignment and domain information

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C	Back alignment and domain information

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional	Back alignment and domain information

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules	Back alignment and domain information

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function	Back alignment and domain information

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor	Back alignment and domain information

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03288 ABCC_SUR2 The SUR domain 2	Back alignment and domain information

>PLN03211 ABC transporter G-25; Provisional	Back alignment and domain information

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd03290 ABCC_SUR1_N The SUR domain 1	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>TIGR00630 uvra excinuclease ABC, A subunit	Back alignment and domain information

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]	Back alignment and domain information

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed	Back alignment and domain information

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>TIGR00630 uvra excinuclease ABC, A subunit	Back alignment and domain information

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>PRK00635 excinuclease ABC subunit A; Provisional	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00635 excinuclease ABC subunit A; Provisional	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport	Back alignment and domain information

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]	Back alignment and domain information

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PRK00064 recF recombination protein F; Reviewed	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes	Back alignment and domain information

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage	Back alignment and domain information

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	Back alignment and domain information

>PF13166 AAA_13: AAA domain	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR00611 recf recF protein	Back alignment and domain information

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>COG4717 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes	Back alignment and domain information

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]	Back alignment and domain information

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]	Back alignment and domain information

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family	Back alignment and domain information

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]	Back alignment and domain information

>PRK14079 recF recombination protein F; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes	Back alignment and domain information

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>COG3910 Predicted ATPase [General function prediction only]	Back alignment and domain information

>PF13175 AAA_15: AAA ATPase domain	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes	Back alignment and domain information

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1209
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
3qkt_A		339	DNA double-strand break repair RAD50 ATPase; RECA-	8e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
3auy_A		371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-06
1f2t_B		148	RAD50 ABC-ATPase; DNA double-strand break repair,	4e-06
3qf7_A		365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	2e-05
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-04
3j16_B		608	RLI1P; ribosome recycling, translation, eukarya, r	6e-05
3j16_B		608	RLI1P; ribosome recycling, translation, eukarya, r	8e-05
2ihy_A		279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-04
3bk7_A		607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-04
3bk7_A		607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-04
1yqt_A		538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-04
3ozx_A		538	RNAse L inhibitor; ATP binding cassette protein, h	6e-04
3ozx_A		538	RNAse L inhibitor; ATP binding cassette protein, h	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  106 bits (266), Expect = 2e-23
 Identities = 104/649 (16%), Positives = 205/649 (31%), Gaps = 166/649 (25%)

Query: 3   YKAIESVLQTINPHTGEKVCLSYRC---ADMDREVPALMGVSKAILENVIFVHQDEAN-- 57
           YK I SV +       +    ++ C    DM + +     +SK  ++++I      +   
Sbjct: 18  YKDILSVFE-------DAFVDNFDCKDVQDMPKSI-----LSKEEIDHIIMSKDAVSGTL 65

Query: 58  ---WPLQD-PSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDA 113
              W L      + +KF +      Y   +  IK   +  +   + Y  + + L      
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 114 AYKL---RESISQDQEKTEALKNQMQELEKSIQDIDDKIH------HTELTLKDLR---- 160
             K    R       +    L+  + EL +  +++   I        T + L        
Sbjct: 126 FAKYNVSRL------QPYLKLRQALLEL-RPAKNV--LIDGVLGSGKTWVALDVCLSYKV 176

Query: 161 --KMQDQISTMTARR----STLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRES 214
             KM  +I  +  +      T+ E  QK    +        +   N K      +     
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELR 235

Query: 215 DISKLEREKNDM-------DTKIKFLEQNIDAY---------T--AEITNLLSEAGAHMS 256
            + K +  +N +       + K        +A+         T   ++T+ LS A     
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 257 RMNERDSTIQKLFARHNLGSLPNAPFSNEAALN-FINRIRSRLSDLERDLEDKKKSDELA 315
            ++    T                  + +   +  +  +  R  DL R++     ++   
Sbjct: 290 SLDHHSMT-----------------LTPDEVKSLLLKYLDCRPQDLPREV---LTTNPRR 329

Query: 316 LKMAWDSYLDANDRWKNIEAQKQAKME--IKAGILKHIKEKENERDSFE-LQISNLNLSH 372
           L +  +S  D    W N +     K+   I++  L  ++  E  R  F+ L +   + +H
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAE-YRKMFDRLSVFPPS-AH 386

Query: 373 IDER------ENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAG 426
           I          + ++ +V    N+L +    +  + K+S +                   
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPS--------------- 430

Query: 427 DSEDRVKLALK-KAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRD----------LKK 475
                  + L+ K +LEN    H+ I+D Y           +P   D          LK 
Sbjct: 431 -------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 476 ----EITQALRALLTEFDDLSSKSREADKEVN--------MLQMKIQE--VTDNLSKHRK 521
               E     R +  +F  L  K R      N        + Q+K  +  + DN  K+ +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 522 DVDSKKRF--------IESKLESLNQQIFSIDTYQKVLDSAKEKRDVQK 562
            V++   F        I SK   L +     +      ++ K+   VQ+
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ---VQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371	Back alignment and structure

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148	Back alignment and structure

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608	Back alignment and structure

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608	Back alignment and structure

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607	Back alignment and structure

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607	Back alignment and structure

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538	Back alignment and structure

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538	Back alignment and structure

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1209
3tui_C		366	Methionine import ATP-binding protein METN; ABC-tr	99.8
3gfo_A		275	Cobalt import ATP-binding protein CBIO 1; structur	99.77
4g1u_C		266	Hemin import ATP-binding protein HMUV; membrane tr	99.77
2olj_A		263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.77
1b0u_A		262	Histidine permease; ABC transporter, transport pro	99.77
3fvq_A		359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.76
3tif_A		235	Uncharacterized ABC transporter ATP-binding prote;	99.76
2onk_A		240	Molybdate/tungstate ABC transporter, ATP-binding p	99.75
3rlf_A		381	Maltose/maltodextrin import ATP-binding protein M;	99.74
3d31_A		348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.73
2pcj_A		224	ABC transporter, lipoprotein-releasing system ATP-	99.73
1vpl_A		256	ABC transporter, ATP-binding protein; TM0544, stru	99.73
2yyz_A		359	Sugar ABC transporter, ATP-binding protein; sugar	99.73
1ji0_A		240	ABC transporter; ATP binding protein, structural g	99.73
2qi9_C		249	Vitamin B12 import ATP-binding protein BTUD; inner	99.72
1oxx_K		353	GLCV, glucose, ABC transporter, ATP binding protei	99.72
3kta_B		173	Chromosome segregation protein SMC; structural mai	99.72
2yz2_A		266	Putative ABC transporter ATP-binding protein TM_0;	99.72
1z47_A		355	CYSA, putative ABC-transporter ATP-binding protein	99.72
1g6h_A		257	High-affinity branched-chain amino acid transport	99.72
1v43_A		372	Sugar-binding transport ATP-binding protein; ATPas	99.72
2it1_A		362	362AA long hypothetical maltose/maltodextrin trans	99.72
1g29_1		372	MALK, maltose transport protein MALK; ATPase, acti	99.71
2nq2_C		253	Hypothetical ABC transporter ATP-binding protein H	99.71
3nh6_A		306	ATP-binding cassette SUB-family B member 6, mitoc;	99.71
1f2t_B		148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.7
2ixe_A		271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.69
2ff7_A		247	Alpha-hemolysin translocation ATP-binding protein	99.69
2ihy_A		279	ABC transporter, ATP-binding protein; ATPase, ABC	99.69
2ghi_A		260	Transport protein; multidrug resistance protein, M	99.67
2pjz_A		263	Hypothetical protein ST1066; ATP binding protein,	99.66
1mv5_A		243	LMRA, multidrug resistance ABC transporter ATP-bin	99.65
1sgw_A		214	Putative ABC transporter; structural genomics, P p	99.65
2d2e_A		250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.64
2zu0_C		267	Probable ATP-dependent transporter SUFC; iron-sulf	99.63
3gd7_A		390	Fusion complex of cystic fibrosis transmembrane co	99.62
2cbz_A		237	Multidrug resistance-associated protein 1; ABC pro	99.6
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	99.58
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	99.57
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.57
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	99.56
2pze_A		229	Cystic fibrosis transmembrane conductance regulat;	99.56
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	99.56
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	99.56
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.55
3j16_B		608	RLI1P; ribosome recycling, translation, eukarya, r	99.54
3ozx_A		538	RNAse L inhibitor; ATP binding cassette protein, h	99.54
2bbs_A		290	Cystic fibrosis transmembrane conductance regulato	99.51
3bk7_A		607	ABC transporter ATP-binding protein; ABC ATPase, i	99.49
1yqt_A		538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.49
3qkt_A		339	DNA double-strand break repair RAD50 ATPase; RECA-	99.49
3qf7_A		365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.48
1yqt_A		538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.47
3bk7_A		607	ABC transporter ATP-binding protein; ABC ATPase, i	99.46
4ad8_A		517	DNA repair protein RECN; DNA binding protein, ATPa	99.46
3ux8_A		670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.45
3ozx_A		538	RNAse L inhibitor; ATP binding cassette protein, h	99.44
3j16_B		608	RLI1P; ribosome recycling, translation, eukarya, r	99.43
3ux8_A		670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.42
3pih_A		916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.41
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	99.41
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	99.4
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.4
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.39
3pih_A		916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.39
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.39
2vf7_A		842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.38
2r6f_A		972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.37
3auy_A		371	DNA double-strand break repair RAD50 ATPase; DNA r	99.36
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.36
2ygr_A		993	Uvrabc system protein A; hydrolase, nucleotide exc	99.35
4aby_A		415	DNA repair protein RECN; hydrolase, double strand	99.34
2r6f_A		972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.33
1e69_A		322	Chromosome segregation SMC protein; structural mai	99.3
2ygr_A		993	Uvrabc system protein A; hydrolase, nucleotide exc	99.29
2vf7_A		842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.27
2o5v_A		359	DNA replication and repair protein RECF; ABC ATPas	99.12
4gp7_A		171	Metallophosphoesterase; polynucleotide kinase phos	99.07
1ye8_A		178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.03
2npi_A		460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.89
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.74
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.58
3b85_A		208	Phosphate starvation-inducible protein; PHOH2, ATP	98.55
1tf7_A		525	KAIC; homohexamer, hexamer, circadian clock protei	98.44
3qks_A		203	DNA double-strand break repair RAD50 ATPase; RECA-	98.35
1tq4_A		413	IIGP1, interferon-inducible GTPase; interferon gam	98.31
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.29
3thx_A		934	DNA mismatch repair protein MSH2; ABC family ATPas	98.28
3thx_B		918	DNA mismatch repair protein MSH3; ABC family ATPas	98.14
2o8b_B		1022	DNA mismatch repair protein MSH6; DNA damage respo	97.98
1znw_A		207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.93
1cr0_A		296	DNA primase/helicase; RECA-type protein fold, tran	97.85
2pt7_A		330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.84
2w0m_A		235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.77
1ewq_A		765	DNA mismatch repair protein MUTS; multiple domains	97.72
1z6g_A		218	Guanylate kinase; structural genomics, SGC, struct	97.68
1wb9_A		800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.6
1nlf_A		279	Regulatory protein REPA; replicative DNA helicase	97.5
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	97.46
2obl_A		347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.45
2ehv_A		251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.43
3b9q_A		302	Chloroplast SRP receptor homolog, alpha subunit CP	97.41
2eyu_A		261	Twitching motility protein PILT; pilus retraction	97.38
2cvh_A		220	DNA repair and recombination protein RADB; filamen	97.32
2og2_A		359	Putative signal recognition particle receptor; nuc	97.29
2dpy_A		438	FLII, flagellum-specific ATP synthase; beta barrel	97.28
2i3b_A		189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.27
3aez_A		312	Pantothenate kinase; transferase, homodimer, COA b	97.23
3sop_A		270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.14
1pzn_A		349	RAD51, DNA repair and recombination protein RAD51,	97.12
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	97.05
3euj_A		483	Chromosome partition protein MUKB, linker; MUKB, M	97.04
3qf7_A		365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.93
4a74_A		231	DNA repair and recombination protein RADA; hydrola	96.87
2v9p_A		305	Replication protein E1; AAA+ molecular motor, DNA	96.83
3jvv_A		356	Twitching mobility protein; hexameric P-loop ATPas	96.76
1tf7_A		525	KAIC; homohexamer, hexamer, circadian clock protei	96.53
2qnr_A		301	Septin-2, protein NEDD5; structural genomics conso	96.32
3ec2_A		180	DNA replication protein DNAC; helicase loader, rep	96.24
4gkw_A		167	Spindle assembly abnormal protein 6; double helix,	96.2
1l8d_A		112	DNA double-strand break repair RAD50 ATPase; zinc	96.15
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.13
2jeo_A		245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.93
1pui_A		210	ENGB, probable GTP-binding protein ENGB; structura	95.75
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	95.6
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.45
3asz_A		211	Uridine kinase; cytidine phosphorylation, transfer	95.32
3auy_A		371	DNA double-strand break repair RAD50 ATPase; DNA r	95.31
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.25
2kjq_A		149	DNAA-related protein; solution structure, NESG, st	94.65
1sxj_E		354	Activator 1 40 kDa subunit; clamp loader, processi	94.63
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	94.6
1qhl_A		227	Protein (cell division protein MUKB); SMC, chromos	94.48
2ewv_A		372	Twitching motility protein PILT; pilus retraction	94.41
3szr_A		608	Interferon-induced GTP-binding protein MX1; interf	94.36
1n0w_A		243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.03
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	93.97
1lw7_A		365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.79
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.69
2bdt_A		189	BH3686; alpha-beta protein, structural genomics, P	93.48
1rj9_A		304	FTSY, signal recognition protein; SRP-GTPase domai	92.38
2qag_C		418	Septin-7; cell cycle, cell division, GTP-binding,	92.34
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	91.8
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	91.06
1odf_A		290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	90.8
2bbw_A		246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	89.57
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	89.5
3lda_A		400	DNA repair protein RAD51; DNA binding protein, ATP	89.45
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.76
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	88.53
2zr9_A		349	Protein RECA, recombinase A; recombination, RECA m	88.37
2px0_A		296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	87.88
1nij_A		318	Hypothetical protein YJIA; structural genomics, P-	87.63
2dr3_A		247	UPF0273 protein PH0284; RECA superfamily ATPase, h	87.34
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.62
2r6a_A		454	DNAB helicase, replicative helicase; replication,	86.23
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	86.21
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.05
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	85.84
4gkw_A		167	Spindle assembly abnormal protein 6; double helix,	85.8
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	85.65
1udx_A		416	The GTP-binding protein OBG; TGS domain, riken str	84.75
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	84.64
2ce7_A		476	Cell division protein FTSH; metalloprotease; HET:	84.09
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.6
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	83.54
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.53
1s96_A		219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	83.15
1f2t_A		149	RAD50 ABC-ATPase; DNA double-strand break repair,	82.78
1ls1_A		295	Signal recognition particle protein; FFH, SRP54, S	82.53
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	81.48
2ius_A		512	DNA translocase FTSK; nucleotide-binding, chromoso	80.75
2f1r_A		171	Molybdopterin-guanine dinucleotide biosynthesis pr	80.65

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C	Back alignment and structure

Probab=99.80  E-value=4.3e-20  Score=204.54  Aligned_cols=146  Identities=17%  Similarity=0.217  Sum_probs=118.5

Q ss_pred             HHHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957         1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus      1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
                      .+++.++++||.+  |+ .+..+++.+.....+   ......+..++..+|..+  ..+++.|||||||      |++||
T Consensus       102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ------RVaIA  175 (366)
T 3tui_C          102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ------RVAIA  175 (366)
T ss_dssp             HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH------HHHHH
T ss_pred             HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHH
Confidence            3456789999986  33 377888776432221   122334566777788765  3567899999999      99999


Q ss_pred             HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957         1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus      1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
                      +||+.+|++|+|||||++||+.++..|.++|.++.    ...|.|||+||||++++..+||++++++.|+|+..|++..+
T Consensus       176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~----~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          176 RALASNPKVLLCDQATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999983    33589999999999999999999999999999999988777


Q ss_pred             cccc
Q 000957         1202 IEAQ 1205 (1209)
Q Consensus      1202 ~~~~ 1205 (1209)
                      +..+
T Consensus       252 ~~~p  255 (366)
T 3tui_C          252 FSHP  255 (366)
T ss_dssp             HSSC
T ss_pred             HhCC
Confidence            6543

PyMOL of 3tui

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}	Back alignment and structure

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}	Back alignment and structure

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*	Back alignment and structure

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12	Back alignment and structure

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}	Back alignment and structure

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*	Back alignment and structure

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12	Back alignment and structure

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A	Back alignment and structure

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12	Back alignment and structure

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A	Back alignment and structure

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12	Back alignment and structure

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}	Back alignment and structure

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12	Back alignment and structure

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C	Back alignment and structure

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*	Back alignment and structure

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*	Back alignment and structure

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}	Back alignment and structure

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}	Back alignment and structure

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*	Back alignment and structure

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*	Back alignment and structure

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}	Back alignment and structure

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A	Back alignment and structure

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}	Back alignment and structure

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*	Back alignment and structure

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*	Back alignment and structure

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*	Back alignment and structure

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*	Back alignment and structure

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}	Back alignment and structure

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}	Back alignment and structure

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}	Back alignment and structure

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12	Back alignment and structure

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12	Back alignment and structure

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*	Back alignment and structure

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A	Back alignment and structure

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}	Back alignment and structure

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}	Back alignment and structure

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}	Back alignment and structure

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}	Back alignment and structure

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*	Back alignment and structure

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*	Back alignment and structure

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}	Back alignment and structure

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B	Back alignment and structure

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*	Back alignment and structure

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}	Back alignment and structure

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*	Back alignment and structure

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}	Back alignment and structure

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}	Back alignment and structure

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}	Back alignment and structure

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}	Back alignment and structure

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}	Back alignment and structure

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*	Back alignment and structure

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A	Back alignment and structure

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}	Back alignment and structure

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A	Back alignment and structure

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12	Back alignment and structure

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*	Back alignment and structure

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}	Back alignment and structure

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*	Back alignment and structure

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11	Back alignment and structure

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*	Back alignment and structure

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*	Back alignment and structure

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*	Back alignment and structure

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*	Back alignment and structure

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*	Back alignment and structure

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A	Back alignment and structure

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*	Back alignment and structure

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A	Back alignment and structure

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}	Back alignment and structure

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*	Back alignment and structure

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}	Back alignment and structure

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*	Back alignment and structure

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*	Back alignment and structure

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}	Back alignment and structure

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}	Back alignment and structure

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*	Back alignment and structure

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}	Back alignment and structure

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}	Back alignment and structure

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11	Back alignment and structure

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*	Back alignment and structure

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}	Back alignment and structure

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*	Back alignment and structure

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*	Back alignment and structure

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*	Back alignment and structure

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*	Back alignment and structure

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*	Back alignment and structure

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*	Back alignment and structure

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*	Back alignment and structure

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*	Back alignment and structure

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}	Back alignment and structure

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*	Back alignment and structure

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*	Back alignment and structure

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}	Back alignment and structure

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12	Back alignment and structure

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*	Back alignment and structure

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B	Back alignment and structure

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25	Back alignment and structure

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*	Back alignment and structure

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6	Back alignment and structure

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*	Back alignment and structure

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...	Back alignment and structure

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*	Back alignment and structure

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1	Back alignment and structure

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}	Back alignment and structure

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}	Back alignment and structure

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*	Back alignment and structure

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*	Back alignment and structure

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*	Back alignment and structure

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*	Back alignment and structure

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1209
g1ii8.1		369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-09
d1w1wa_		427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-09
g1f2t.1		292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-07
d3b60a1		253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-06
d2hyda1		255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-05
d2pmka1		241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-05
d1l2ta_		230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	8e-05
d1v43a3		239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-04
d1g2912		240	c.37.1.12 (1:1-240) Maltose transport protein MalK	4e-04
d1sgwa_		200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-04
d1g6ha_		254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-04
d1r0wa_		281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	0.001
d1mv5a_		242	c.37.1.12 (A:) Multidrug resistance ABC transporte	0.002
d1jj7a_		251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	0.003
d1b0ua_		258	c.37.1.12 (A:) ATP-binding subunit of the histidin	0.003

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200	Back information, alignment and structure

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1209
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	99.87
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.87
d1oxxk2		242	Glucose transport protein GlcV, N-terminal domain	99.86
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	99.86
d1g2912		240	Maltose transport protein MalK, N-terminal domain	99.86
d2awna2		232	Maltose transport protein MalK, N-terminal domain	99.85
d2onka1		240	Molybdate/tungstate import ATP-binding protein Wtp	99.85
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.84
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	99.83
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	99.8
d1vpla_		238	Putative ABC transporter TM0544 {Thermotoga mariti	99.79
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	99.78
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	99.78
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	99.77
d1g6ha_		254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.77
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	99.76
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	99.76
d1l7vc_		231	ABC transporter involved in vitamin B12 uptake, Bt	99.75
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	99.65
d1w1wa_		427	Smc head domain {Baker's yeast (Saccharomyces cere	99.56
g1f2t.1		292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.44
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	99.43
g1ii8.1		369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.26
d1e69a_		308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.75
g1xew.1		329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.12
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.17

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.4e-23  Score=210.66  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=122.4

Q ss_pred             HHHHHHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957         1049 EEINKIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus      1049 ~~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
                      ..+++.++++||.+  |+ -+..+++.+.....   ....+..+..++..+|..+  ..+++.|||||+|      |+||
T Consensus        78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~Q------Rvai  151 (240)
T d3dhwc1          78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ------RVAI  151 (240)
T ss_dssp             HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHH------HHHH
T ss_pred             hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHH
Confidence            44567799999987  43 47788877643322   2223445667788887655  4567899999999      9999


Q ss_pred             HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957         1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus      1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
                      |+||+.+|++|||||||++|||.+...+.++|.++.    ...|.|+|+||||+.++..+||++++++.|+|+.+|++..
T Consensus       152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~----~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~e  227 (240)
T d3dhwc1         152 ARALASNPKVLLCDEATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE  227 (240)
T ss_dssp             HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHH----HHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred             hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHH----hccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999999984    3348999999999999999999999999999999999999


Q ss_pred             ccccc
Q 000957         1201 IIEAQ 1205 (1209)
Q Consensus      1201 ~~~~~ 1205 (1209)
                      ++..|
T Consensus       228 i~~~P  232 (240)
T d3dhwc1         228 VFSHP  232 (240)
T ss_dssp             TTCSS
T ss_pred             HHhCC
Confidence            98754

PyMOL of d3dhwc1

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure