Citrus Sinensis ID: 000976

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200----

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

cccEEEEEEEEEEEEEccccccEEEEEEEEEEEccccccHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccccccccccEEEccccEEEEEcccccccccccccccccccccEEEEEEcccEEEccEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHcccccEEEEEEEEEEEHHHHHHcccEEEEEccccEEEEEEEEEccEEEEEEcccEEEEEccEEEEccEEEEcccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEcccccccccccccccEEEcccccccccccccEEcccccEEccccccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccEEEEEccccEEEEEEEEEccccccccccccccccccEEEEEcccccccccEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccEEEEEEcccccccccEEEcEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccc

cccEEEEEEEEEEEEEcHHHHcHHEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccEEcccccEEEEEcccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEHccEEEEEcccEEEEcccccEccccEEEccccccHHHHHEEEEHHEEEEEEccccEEEccccccccccccccEccccccccHHHccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccEcccccccccccccccccEEEcccEEcccccccccccccEcccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccccccccEEccccccccccccHHHHHHHHHHHHcccccEEcccccccEEcccccccccEEEEEEccccccccEEEEEEEEEEEEEccccccccccccccccEcccccccccccEEEEccccccEEccccccHHHcccccccHccccEEEEEEcccccccccccEEccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccccHcccccEEEEEEEccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHccEEcccccHEEEEEEEHcccccccccccHHHHccccEEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHccEEEEEHHEHHHHccHHEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEccHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccc

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMfdnwnsnapSLLAMLVTYVLISIHWGvsascfsrgnsfacpdnaggagtlydavprtltvsnynmstdTETLllefpnqplwtnvyvqncaratVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEmlvdgggdATVATSLLEASNLIVLKEFSIIHSNANLEVHGQgllnlsgpgdrIEAQRLVLALFYSIhvgpgsvlrsplenattdavtprlyceiqdcpvellhppedcnvnsslsFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgmgctggvgrgkvigngvgsggghggkgglgcfndscveggisygnanlpcelgsgsgndtsgnstagggiivmgsfehplsslsvegsvkadgqsfedlstkknyvvrngsiggagggsgGTILLFLHTldigdsavlssvggygshmggggggggrihfhwsdiptgdvyqpiasvrgsiriggglgghelgggengtttgkacpkglygifceecpvgtyknvtgsdkslchqcppqefphraVYISVrggiaetpcpyrciseryhmphcYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKfvgvdelpgpaptqhgsqidhsfpfLESLNEVLEtnraeeshshvhrmyfmgpntfsqpwhlphtppeqIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYeglkvaatPDLMLAYLDFFlggdekrtdlppclhhrfpmslifggdgsymapfslqnDNILTSLmsqlvpptICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLEthanptlqlhglRVDLAWFQATACGYCQYGLLVYAvggeneptsigsfdrgrlieresrvksidmenpsgrlreETLLTRAQRSSESYMKRkrshggiidtnnvqMLEERRDIFYFLSFIvhntkpvghqdLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILplgillpfpaginalfshgprrsvGLARVYALWNVTSLINVGVAFLCGYVhyssgsspnkkvpnfqpwnfsmdesewwifpAGLVLCKIFQSQLVNWHVANleiqdrtlysNDFELFWQS

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVgpgsvlrspleNATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGqsfedlstkknYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENeptsigsfdrgrlieresrvksidmenpsgrlreetlltraqrssesymkrkrshggiidtnnvqMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYssgsspnkkVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASgmgctggvgrgkvigngvgsggghggkgglgCFNDSCVEGGISYGNANLPCELgsgsgndtsgnstagggIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNgsiggagggsggTILLFLHTLDIGDSAVLSSVggygshmggggggggRIHFHWSDIPTGDVYQPIASVRGSIRIggglgghelgggengtttgKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWlfclllvgllillalvlsvARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDlvglvisvlllgdfslvlltllqlysislVDvflvlfilplgillpfpagiNALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

***RVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCE*****************GIIVMGSF***************************NYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVL*******************IHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDEL*****************FL******************VHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE**********************************************************IIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYS*********PNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFW**

**TRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLEN****AVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGK****************GLGCFNDSCVEGGISYGNANLP*********************IVMGSFEHPLSSLSVEGSVKAD**************************SGGTILLFLHTLDIG*********************GGRIHFHWSDIPTGDVYQPIASVRG******************GTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKF*********************FPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE********************************************************GGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQ*

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTR*************SHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

*ATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLISIHWGVSASCFSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELG**********STAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGP******SQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE**********************************************ESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSG***********PWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1204
296081597		1439	unnamed protein product [Vitis vinifera]	0.941	0.788	0.792	0.0
255550884		1426	conserved hypothetical protein [Ricinus	0.926	0.781	0.806	0.0
359475929		1416	PREDICTED: uncharacterized protein LOC10	0.922	0.784	0.786	0.0
224088972		1412	predicted protein [Populus trichocarpa]	0.912	0.778	0.773	0.0
224141605		1416	predicted protein [Populus trichocarpa]	0.918	0.781	0.786	0.0
356510059		1447	PREDICTED: uncharacterized protein LOC10	0.949	0.789	0.775	0.0
449461397		1448	PREDICTED: uncharacterized protein LOC10	0.941	0.782	0.759	0.0
356515645		1417	PREDICTED: uncharacterized protein LOC10	0.923	0.784	0.775	0.0
334187625		1476	uncharacterized protein [Arabidopsis tha	0.946	0.771	0.738	0.0
449507269		1417	PREDICTED: uncharacterized LOC101205923	0.915	0.777	0.747	0.0

>gi\|296081597\|emb\|CBI20602.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1720 bits (4455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 918/1158 (79%), Positives = 1011/1158 (87%), Gaps = 24/1158 (2%)

Query: 59   VSASCFSR----------GNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEF 108
            +S   FSR          G+SF CP+N+G AGT YDAVPR+L VSN N STDT+TLLLEF
Sbjct: 294  ISVDVFSRHDDPKIFVHGGSSFGCPENSGAAGTFYDAVPRSLIVSNNNRSTDTDTLLLEF 353

Query: 109  PNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELL 168
            P QPLWTNVYV++ A+ATVPLLWSRVQVQGQISL CGGVLSFGLAHYA SEFELLAEELL
Sbjct: 354  PYQPLWTNVYVRDHAKATVPLLWSRVQVQGQISLYCGGVLSFGLAHYALSEFELLAEELL 413

Query: 169  MSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNAN 228
            MSDS+IKVYGALRM+VK+FLMWNS++L+DGGGDA VATSLLEASNL+VLKE S+IHSNAN
Sbjct: 414  MSDSIIKVYGALRMSVKMFLMWNSKLLIDGGGDANVATSLLEASNLVVLKESSVIHSNAN 473

Query: 229  LEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQ 288
            L VHGQGLLNLSGPGD IEAQRLVL+LFYSIHVGPGSVLR PLENATTDAVTPRLYCE+Q
Sbjct: 474  LGVHGQGLLNLSGPGDWIEAQRLVLSLFYSIHVGPGSVLRGPLENATTDAVTPRLYCELQ 533

Query: 289  DCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISA 348
            DCP ELLHPPEDCNVNSSLSFTLQICRVEDI V GL++GSVVHFHRARTI+VQSSG IS 
Sbjct: 534  DCPTELLHPPEDCNVNSSLSFTLQICRVEDITVQGLIKGSVVHFHRARTIAVQSSGKIST 593

Query: 349  SGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSG- 407
            S MGCTGGVGRGK + +G+GSGGGHGGKGG GC+  SCVEGGISYGNA+LPCELGSGSG 
Sbjct: 594  SRMGCTGGVGRGKFLSSGLGSGGGHGGKGGDGCYKGSCVEGGISYGNADLPCELGSGSGS 653

Query: 408  -NDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAG 466
             NDT   STAGGG+IVMGS EHPLSSLS+EGSVKADG+S  + +    Y + NGS    G
Sbjct: 654  GNDTLDGSTAGGGVIVMGSLEHPLSSLSIEGSVKADGESSRESTRNNYYSMNNGSNVNPG 713

Query: 467  GGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIAS 526
            GGSGGTILLFL +L +G++AVLSS+GG+GS  GGGGGGGGRIHFHWSDIPTGDVYQPIAS
Sbjct: 714  GGSGGTILLFLRSLALGEAAVLSSIGGHGSLHGGGGGGGGRIHFHWSDIPTGDVYQPIAS 773

Query: 527  VRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQC 586
            V+GSI   GGL   + G GENGT TGKACP+GLYGIFCEECP GTYKNVTGSD+SLC  C
Sbjct: 774  VKGSIHSRGGLARDQSGMGENGTVTGKACPRGLYGIFCEECPAGTYKNVTGSDRSLCRHC 833

Query: 587  PPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVG 646
            P  E P RA+YISVRGGIAETPCPY+CIS+RYHMPHCYTALEELIYTFGGPWLFCLLL+G
Sbjct: 834  PYHELPRRAIYISVRGGIAETPCPYKCISDRYHMPHCYTALEELIYTFGGPWLFCLLLLG 893

Query: 647  LLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHV 706
            +LILLALVLSVARMKFVGVDE PGPAPTQHGSQIDHSFPFLESLNEVLETNRAEES SHV
Sbjct: 894  VLILLALVLSVARMKFVGVDESPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHV 953

Query: 707  HRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAI 766
            HRMYFMGPNTFS+PWHLPHTPPEQIKEIVYEGAFN FVDEINAIA Y WWEG+++SIL+I
Sbjct: 954  HRMYFMGPNTFSEPWHLPHTPPEQIKEIVYEGAFNGFVDEINAIAAYQWWEGSMHSILSI 1013

Query: 767  LAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLD 826
            LAYPLAWSWQQWRRR KLQ+LRE+VRS YDHACLRSCRSRALYEGLKVAAT DLMLA++D
Sbjct: 1014 LAYPLAWSWQQWRRRKKLQQLREFVRSGYDHACLRSCRSRALYEGLKVAATSDLMLAHVD 1073

Query: 827  FFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRL 886
            FFLGGDEKRTDLP  L  RFPMSL FGGDGSYMAPFSL +DNILTSLMSQ +PPT  YRL
Sbjct: 1074 FFLGGDEKRTDLPFRLQQRFPMSLPFGGDGSYMAPFSLNSDNILTSLMSQAIPPTTWYRL 1133

Query: 887  VAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLL 946
            VAGLNAQLRLVRRGRLR TFRPVLRWLETHA+P L++HG++VDLAWFQ+TACGYCQYGLL
Sbjct: 1134 VAGLNAQLRLVRRGRLRVTFRPVLRWLETHASPALRVHGVQVDLAWFQSTACGYCQYGLL 1193

Query: 947  VYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRK 1006
            VYAV  E E T +   D     E +SR     M           LL+ A+RS+ES MKRK
Sbjct: 1194 VYAVEDETESTPVDGVDGAIQNEHQSRDFGAAM-----------LLSGARRSTESLMKRK 1242

Query: 1007 RSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTL 1066
            + +G I+DTN++ MLEE++DIFY LSFI+HNTKPVG  DLVGLVIS+LLL D SLVLLTL
Sbjct: 1243 KPYGYILDTNSLHMLEEKKDIFYPLSFIIHNTKPVGQHDLVGLVISMLLLADISLVLLTL 1302

Query: 1067 LQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVG 1126
            LQLYSISL DVFLVLF+LPLGILLPFPAGINALFSHGPRRS GLARVYALWN+TSLINV 
Sbjct: 1303 LQLYSISLADVFLVLFVLPLGILLPFPAGINALFSHGPRRSAGLARVYALWNITSLINVM 1362

Query: 1127 VAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANL 1186
            VAF+CGYVHY++  SP+KK+PNFQPWN +MD+SEWWI P GLV+CK  QS+L+NWH+ANL
Sbjct: 1363 VAFICGYVHYNT-QSPSKKLPNFQPWNINMDDSEWWIIPTGLVVCKFIQSRLINWHIANL 1421

Query: 1187 EIQDRTLYSNDFELFWQS 1204
            EIQDR+LYSNDFELFWQS
Sbjct: 1422 EIQDRSLYSNDFELFWQS 1439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255550884\|ref\|XP_002516490.1\| conserved hypothetical protein [Ricinus communis] gi\|223544310\|gb\|EEF45831.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359475929\|ref\|XP_002278525.2\| PREDICTED: uncharacterized protein LOC100243932 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224088972\|ref\|XP_002308587.1\| predicted protein [Populus trichocarpa] gi\|222854563\|gb\|EEE92110.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224141605\|ref\|XP_002324157.1\| predicted protein [Populus trichocarpa] gi\|222865591\|gb\|EEF02722.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356510059\|ref\|XP_003523758.1\| PREDICTED: uncharacterized protein LOC100783686 [Glycine max]	Back alignment and taxonomy information

>gi\|449461397\|ref\|XP_004148428.1\| PREDICTED: uncharacterized protein LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356515645\|ref\|XP_003526509.1\| PREDICTED: uncharacterized protein LOC100804207 [Glycine max]	Back alignment and taxonomy information

>gi\|334187625\|ref\|NP_001154709.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332004329\|gb\|AED91712.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449507269\|ref\|XP_004162983.1\| PREDICTED: uncharacterized LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1204
TAIR\|locus:2123762		1432	AT4G32920 "AT4G32920" [Arabido	0.803	0.675	0.603	0.0

TAIR\|locus:2123762 AT4G32920 "AT4G32920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3112 (1100.5 bits), Expect = 0., Sum P(3) = 0.
 Identities = 593/982 (60%), Positives = 709/982 (72%)

Query:    64 FSRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCA 123
             F+ G SF CP+NAG AGTLYD +  +LT+ N+N +T T+TLLLEFPN  L+TN+Y++N A
Sbjct:   308 FNGGRSFGCPENAGAAGTLYDVISESLTIDNHNKTTYTDTLLLEFPNHRLFTNLYIRNMA 367

Query:   124 RATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMT 183
             +  VPL WSRVQVQG ISLS GG L+FGL  YA+SEFEL AEELLMS+S IKVYGALRMT
Sbjct:   368 KVAVPLRWSRVQVQGLISLSNGGELNFGLPRYASSEFELFAEELLMSNSAIKVYGALRMT 427

Query:   184 VKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPG 243
             VK+FLM  S M +DGGG   + TS+LE SNL+VLKE S+I SN NL VHGQGLLNL+G G
Sbjct:   428 VKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSNGNLGVHGQGLLNLTGTG 487

Query:   244 DRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNV 303
             D IEAQRL+L+LFYSI VG G+VLR PL+NA+T  +TP+LYC+ QDCPVELLHPPEDCNV
Sbjct:   488 DTIEAQRLILSLFYSIQVGAGAVLRGPLQNASTGGLTPKLYCQRQDCPVELLHPPEDCNV 547

Query:   304 NSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASXXXXXXXXXXXXXX 363
             NSSL FTLQICRVEDI V+GL++GSV+ FH ART+ V+SSG ISA               
Sbjct:   548 NSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSSGTISADGMGCKGGVGTGRFL 607

Query:   364 XXXXXXXXXXXXXXXXXCFNDSCVEGGISYGNANLPCELXXXXXXXXXXXXXXXXXIIVM 423
                              C+N +C+EGG SYGNA+LPCEL                 IIV+
Sbjct:   608 RSGIGSGGGHGGKGGSGCYNHTCIEGGESYGNADLPCELGSGSGNEESTDSVAGGGIIVL 667

Query:   424 GSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNXXXXXXXXXXXXTILLFLHTLDIG 483
             GS EHPLSSLS+EGS+  DG+S      +K     +            T+LLFL TL+IG
Sbjct:   668 GSLEHPLSSLSLEGSITTDGES-----PRKTLKGLSNSSLGPGGGSGGTVLLFLRTLEIG 722

Query:   484 DSAVLSSVXXXXXXXXXXXXXXXRIHFHWSDIPTGDVYQPIASVRGSIRIXXXXXXXXXX 543
              SA+LSS+               RIHFHWSDIPTGDVY P+A V+G + +          
Sbjct:   723 RSAILSSIGGNGSLKGGGGGSGGRIHFHWSDIPTGDVYHPVAIVKGRVYVRGGMGIIEDN 782

Query:   544 XXXXXXXXXKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG 603
                      KACP+GLYG+FCEECP GTYKNVTGSDK+LCH CP  + PHRAVY++VRGG
Sbjct:   783 IGGNGTLTGKACPEGLYGLFCEECPSGTYKNVTGSDKALCHLCPANDIPHRAVYVTVRGG 842

Query:   604 IAETPCPYRCISERYHMPHCYTALEELIYTFGGPWXXXXXXXXXXXXXXXXXXXARMKFV 663
             +AETPCPY+CIS+RYHMPHCYT LEELIYTFGGPW                   ARMKFV
Sbjct:   843 VAETPCPYKCISDRYHMPHCYTTLEELIYTFGGPWLFGVLLVVVLLLLALVFSVARMKFV 902

Query:   664 GVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHL 723
               DEL G APTQHGSQIDHSFPFLESLNEV+ET+R EES  H+HR+YF+GPNTFS+PWHL
Sbjct:   903 SGDELHGSAPTQHGSQIDHSFPFLESLNEVMETSRVEESQGHMHRIYFLGPNTFSEPWHL 962

Query:   724 PHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMK 783
              HTPPE+IKEIVYE AFN FVDE+N IA Y WWEGAIY +L++L YPLAWSWQQ RRR+K
Sbjct:   963 SHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLVYPLAWSWQQSRRRLK 1022

Query:   784 LQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLH 843
              Q+LR++VRSEYDH+CLRSCRSRALYEGLKVAATPDLMLA+LDFFLGGDEKR+DLPP +H
Sbjct:  1023 FQKLRDFVRSEYDHSCLRSCRSRALYEGLKVAATPDLMLAHLDFFLGGDEKRSDLPPQVH 1082

Query:   844 HRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLR 903
              R PM LIFGGDGSYMA +SLQ+D+ILTSL+SQLVPPT  YR VAGLNAQLRLV++G+LR
Sbjct:  1083 QRLPMPLIFGGDGSYMAYYSLQSDDILTSLLSQLVPPTTWYRFVAGLNAQLRLVQQGKLR 1142

Query:   904 ATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFD 963
             +TFR V+RW+ETH NP L+ HG+RVDLA FQA +   CQYG+LV+ +   +E  S  S D
Sbjct:  1143 STFRSVMRWIETHGNPALKRHGVRVDLARFQALSSSSCQYGILVHTIA--DEVASTRSDD 1200

Query:   964 RGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEE 1023
                    +       +EN SG  RE     +  RS  ++++ +   G IID  ++Q L+E
Sbjct:  1201 E----TEQQHPWGTQIENHSGDFRENF---QPLRSEINHVRHQEC-GEIIDIGSLQFLKE 1252

Query:  1024 RRDIFYFLSFIVHNTKPVGHQD 1045
              +D+   +SF++HNTKPVGHQD
Sbjct:  1253 EKDVLSLISFLIHNTKPVGHQD 1274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032139001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1430 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1204
pfam07699		48	pfam07699, GCC2_GCC3, GCC2 and GCC3	7e-04

>gnl\|CDD\|219525 pfam07699, GCC2_GCC3, GCC2 and GCC3	Back alignment and domain information

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 564 CEECPVGTYKNVTGSDKSLCHQCPP 588
           CE CP GTY+   G D   C  CPP
Sbjct: 11  CEPCPRGTYQPEEGQDS--CIPCPP 33

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1204
KOG0196		996	consensus Tyrosine kinase, EPH (ephrin) receptor f	96.31
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	96.25
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	95.14
cd00185		98	TNFR Tumor necrosis factor receptor (TNFR) domain;	92.77
PF10256		118	Erf4: Golgin subfamily A member 7/ERF4 family; Int	92.73
PF07562		54	NCD3G: Nine Cysteines Domain of family 3 GPCR; Int	92.7
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	91.9
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	88.18
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	84.23
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	80.79

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]	Back alignment and domain information

Probab=96.31  E-value=0.0034  Score=77.83  Aligned_cols=54  Identities=39%  Similarity=0.883  Sum_probs=39.9

Q ss_pred             cCCCCCCC----cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCccCCCCCccccCCccc
Q 000976          553 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYH  619 (1204)
Q Consensus       553 k~CP~Gly----G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~~~~CpY~C~sdk~~  619 (1204)
                      =-|.+||.    |.-|+.||.||||...|  ...|.+||.+...+       ..  ..++|.  |..++|+
T Consensus       261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyR  318 (996)
T KOG0196|consen  261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYR  318 (996)
T ss_pred             eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCccc
Confidence            46899984    77799999999999764  57899999854221       11  246775  8888775

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains	Back alignment and domain information

>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4	Back alignment and domain information

>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1204
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.3 bits (145), Expect = 4e-09
 Identities = 98/616 (15%), Positives = 182/616 (29%), Gaps = 186/616 (30%)

Query: 556  PKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 615
             + +   F EE     YK +    K+   Q  P       +YI  R  +      +    
Sbjct: 75   QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PS--MMTRMYIEQRDRLYNDNQVFA--- 127

Query: 616  ERYHMP--HCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAP 673
             +Y++     Y  L +                      AL L +   K V +D + G   
Sbjct: 128  -KYNVSRLQPYLKLRQ----------------------AL-LELRPAKNVLIDGVLG--- 160

Query: 674  TQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPW------HLPHTP 727
               G            +   L+      S+    +M F     F   W      + P T 
Sbjct: 161  --SGKT---------WV--ALDVCL---SYKVQCKMDF---KIF---WLNLKNCNSPETV 198

Query: 728  PEQIKEIVY--EGAFNSFVD-EINAIATYHWWEGAIYSILAILAYPLA-------WSWQQ 777
             E +++++Y  +  + S  D   N     H  +  +  +L    Y           + + 
Sbjct: 199  LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 778  WRRRMKLQRLREYVRSEYDHAC--LRSCRSRALYEGLKVAA-------------TPDLML 822
            W                ++ +C  L + R + + + L  A              TPD + 
Sbjct: 259  WN--------------AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 823  AYLDFFLGGDEKRTDLPP--CLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPP 880
            + L  +L    +  DLP      +   +S+I       +       DN       +L   
Sbjct: 305  SLLLKYLDCRPQ--DLPREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLT-- 356

Query: 881  TICYRLVAGLNAQLRLVRRGRLR--ATFRPVLRWLETHAN-PTLQLHGLRVDLAWFQATA 937
            TI   + + LN       R      + F P        A+ PT+ L  +     WF    
Sbjct: 357  TI---IESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSLI-----WFDVI- 400

Query: 938  CGYCQYGLLVYAVGGENEPTSI-GSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQ 996
                           +++   +     +  L+E+         +  +  +    L  + +
Sbjct: 401  ---------------KSDVMVVVNKLHKYSLVEK-------QPKESTISIPSIYLELKVK 438

Query: 997  RSSESYMKRKRSHGGIIDTNNVQMLEERRDIF------YFLSFIVHNTKPVGHQDLVGLV 1050
              +E  +     H  I+D  N+    +  D+       YF S I H+ K + H + + L 
Sbjct: 439  LENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 1051 ISVLLLGDFS-----LVLLTLLQLYSISLVDVFLVL-----FILP--------LGILLPF 1092
              V L  DF      +   +     S S+++    L     +I          +  +L F
Sbjct: 494  RMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 1093 PAGINALFSHGPRRSV 1108
               I           +
Sbjct: 552  LPKIEENLICSKYTDL 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1204
1jma_B		167	Herpesvirus entry mediator; V-type IG molecule and	93.78
3fl7_A		536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	93.59
2uwi_A		142	CRME protein; receptor, poxvirus TNF receptor, rec	92.46
1du3_A		130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	91.92
2hey_R		146	Tumor necrosis factor receptor superfamily member;	91.85
3me4_A		216	Tumor necrosis factor receptor superfamily member;	91.01
3alq_R		173	Tumor necrosis factor receptor superfamily member;	90.75
4fhq_A		134	Tumor necrosis factor receptor superfamily member;	89.58
3u3p_A		313	Tumor necrosis factor receptor superfamily member;	89.5
1sg1_X		161	Tumor necrosis factor receptor superfamily member	89.17
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	89.04
2e4u_A		555	Metabotropic glutamate receptor 3; G-protein-coupl	87.23
3tje_F		156	Tumor necrosis factor receptor superfamily member;	86.37
1sg1_X		161	Tumor necrosis factor receptor superfamily member	85.71
1ext_A		162	Tumor necrosis factor receptor; binding protein, c	84.34
3tje_F		156	Tumor necrosis factor receptor superfamily member;	84.19
3urf_Z		171	Tumor necrosis factor receptor superfamily member;	83.89
3alq_R		173	Tumor necrosis factor receptor superfamily member;	83.25
3qd6_R		177	CD40L receptor, tumor necrosis factor receptor sup	81.99
2hey_R		146	Tumor necrosis factor receptor superfamily member;	81.45
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	81.32
3me4_A		216	Tumor necrosis factor receptor superfamily member;	80.58

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*	Back alignment and structure

Probab=93.78  E-value=0.041  Score=55.71  Aligned_cols=63  Identities=27%  Similarity=0.535  Sum_probs=40.1

Q ss_pred             ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCC-ceEEeeeCC-ccCCCCCccccCCccc
Q 000976          552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH  619 (1204)
Q Consensus       552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~r-a~yiyvr~G-~~~~~CpY~C~sdk~~  619 (1204)
                      =+.||+|+|         ...|++||.|+|+...+. ...|.+|+.  .+.. ..++..... ...+.|  .|.+++|.
T Consensus        16 C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~   89 (167)
T 1jma_B           16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC   89 (167)
T ss_dssp             CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred             CCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence            366777764         467999999999986432 356888874  3322 233322222 235678  89998884

PyMOL of 1jma

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*	Back alignment and structure

>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}	Back alignment and structure

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*	Back alignment and structure

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1204
d1jmab1		56	g.24.1.1 (B:4-59) Cellular receptor HveA {Human (H	0.002
d2heyr3		54	g.24.1.1 (R:29-82) Tumor necrosis factor receptor	0.002

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure


class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 555 CPKGLY---GIFCEECPVGTY--KNVTGSDKSLCHQCPPQEF 591
           C +  Y      C +C  G    +       ++C  CPP  +
Sbjct: 1   CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTY 42

PyMOL of d1jmab1

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 54	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1204
d1sg1x3		42	Low affinity neurotrophin receptor p75NTR {Rat (Ra	95.75
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	93.12
d1exta1		59	Tumor necrosis factor (TNF) receptor {Human (Homo	92.18
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	91.36
d1kloa1		55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	89.94
d2heyr3		54	Tumor necrosis factor receptor superfamily member	89.51
d2heyr3		54	Tumor necrosis factor receptor superfamily member	87.06

>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.0015  Score=51.59  Aligned_cols=30  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             cCCCCCCC---------cccceeCCCCccccccCCCCCCc
Q 000976          553 KACPKGLY---------GIFCEECPVGTYKNVTGSDKSLC  583 (1204)
Q Consensus       553 k~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C  583 (1204)
                      +.||+|++         ...|++||.|||.+++ |+...|
T Consensus         3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C   41 (42)
T d1sg1x3           3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC   41 (42)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred             ccCCCCcCeeecCcCCCCceeeECcCCcccCcC-CCcCcc
Confidence            57999984         7789999999999976 445556

PyMOL of d1sg1x3

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure