Citrus Sinensis ID: 000994

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------
METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID
ccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccCCccccccccccHHHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHcccccccccccccEEEcHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHccHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEECccccHHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHccccc
****S**************HETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAM**************************************************************RSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKV*****VI**EEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVD**********************************NFLIQQTELY**************************************************************************************************************TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLAS*******KSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIG*************IDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG****
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METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA helicase INO80 DNA helicase and probable main scaffold component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway.probableQ8RXS6

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.12DNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1Z3I, chain X
Confidence level:very confident
Coverage over the Query: 427-743,790-803,844,891-894,958-963,1003,1038-1193
View the alignment between query and template
View the model in PyMOL
Template: 3MWY, chain W
Confidence level:very confident
Coverage over the Query: 429-632,643-703,720-746,813-816,894,934-943,989-990,1048-1193
View the alignment between query and template
View the model in PyMOL
Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 191-201,221-294
View the alignment between query and template
View the model in PyMOL