Citrus Sinensis ID: 000994

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------

METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID

ccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHcccccccccccccEEEcHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHccHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHccccc

ccccHHHHHccccccccccccccccccEEEcccEEEccccEEEEccHHHHHHHHHccccccccEEEEHHHccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccEEEccccccccccccccccEEEEEcccccEEEEEEEEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHcccccHEHHHccccHHHHHHHHHHHHHHHccccccEEEEEcHcHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccccccccccEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcHcHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHccccccccccHcccccccccccccccEEEcccccccHHHHHcHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHcccccEEcccccccHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccccHHHHHHHHcccHHHHHHHHcccHHHHHHccccccccccccccccHccccccccccccccccccccccccccHHHHEcccHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHccc

mettsdwlndisprrptnyheteftpkvmyepayldigegityriplsydklapslnlpsfsdiQVEEFYLKGTLDLGSLAAMMAndkrfgprsrvgmgeprpqYESLQARLKALVasnspqkfslkvsdtgnssipegaagsIQRSILSEGGILQVYYVKVLEKGETYEIIERAlpkkvkvkkdpsvIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFmqnksssqpsevlpvgndkpndqelllsssefepgeeedpeEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSvagsgnidlhnpstmpvtstvqtpelfkgSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEkniwgpflvvapasvlnnWADEISRfcpdlktlpywgglQERMVLrkninpkrlyrrdAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNcrnrllltgtpIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEShaehggtlneHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLaglfdnsrghlnekKILNLMNIVIQLRKvcnhpelfernegssylyfgeipnsllpppfgeledisfsgvrnpieykipkiVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSlasgsdaspvksetfgfthlmdlspAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAmdgelnenhpdrgkvRAVTRLLLipsrsetnllrrkftigpgydpcedLVVSHQERLLSNIKLLNAtytfipqaqappinvqcsdrnftyrmteeqhdpWLKRLLIGFartsenigprkpggphqliqeidselpvakpalqltyqifgscppmqsfdpaklltdsgklQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLrldgsstimdrRDMVRDFQHRSDIFVFLLSTragglginltaADTVIfyesdwnptldlQAMDRAHRLGQTKDVSSWLKLCHLFIFSMigngmqid

mettsdwlndisprrptnyheteftpkvmyEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEiieralpkkvkvkkdpsviekeemekigkvwvnIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCqrevkmkvsrslklmrgaairtrklARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNavskqkmltntFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEaqaikssnsirWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELttktevmvhcKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGelnenhpdrgkvrAVTRLllipsrsetnllrrKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFipqaqappinvQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSmigngmqid

METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPkkvkvkkDPSVIEKEEMEKIGKVWVNIVRKDIPKYhktfftfhkkqqIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDkemaevrkreereaaealkreqelreaKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQelllsssefepgeeedpeeaelkkealkaAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID

*******************HETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAM**************************************************************RSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKV*****VI**EEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVD**********************************NFLIQQTELY*****************************************************************************************************************TPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLAS*******KSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL*******GKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFART******************IDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN*****

****S*****************EFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLG********************************************************************************************************************EKIGKVWVNIVRKDIPKYHKTF****************************************RKLARDMLLFWKR*****************************************Q******************************************************************************************************************TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK*****************NRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISL******************LMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSI************KSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIG**************************LTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTI**RR*****FQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG****

METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM************PVGNDKPNDQELLLSSS****************KEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID

****************TNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMAND************************LKALV*SNS**KFS*KV**TGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSS*******************************EDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAA***************************TSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG*Q**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQID

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1196	2.2.26 [Sep-21-2011]
Q8RXS6		1507	DNA helicase INO80 OS=Ara	yes	no	0.986	0.783	0.762	0.0
Q6ZPV2		1559	DNA helicase INO80 OS=Mus	yes	no	0.769	0.590	0.445	0.0
Q9ULG1		1556	DNA helicase INO80 OS=Hom	yes	no	0.772	0.593	0.447	0.0
Q1DUF9		1662	Putative DNA helicase INO	N/A	no	0.775	0.557	0.408	0.0
Q0CA78		1690	Putative DNA helicase ino	N/A	no	0.753	0.533	0.408	0.0
Q6BGY8		1364	Putative DNA helicase INO	yes	no	0.771	0.676	0.415	0.0
Q2UTQ9		1444	Putative DNA helicase ino	yes	no	0.761	0.630	0.410	0.0
A7TJI3		1556	Putative DNA helicase INO	N/A	no	0.755	0.580	0.401	0.0
O14148		1604	Putative DNA helicase ino	yes	no	0.755	0.563	0.419	0.0
A1C9W6		1707	Putative DNA helicase ino	N/A	no	0.765	0.536	0.423	0.0

>sp\|Q8RXS6\|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2	Back alignment and function desciption

 Score = 1901 bits (4925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1183 (76%), Positives = 1032/1183 (87%), Gaps = 3/1183 (0%)

Query: 1    METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPS 60
            M+ + ++  D++P R  +YH+ + TPK+ YEP+YLDIG+G+ Y+IP SYDKL  SLNLPS
Sbjct: 150  MDNSPNFAADVTPHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIPPSYDKLVASLNLPS 209

Query: 61   FSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNS 120
            FSDI VEEFYLKGTLDL SLA +MA+DKR G RSR GMGEPRPQYESLQAR+KAL  SNS
Sbjct: 210  FSDIHVEEFYLKGTLDLRSLAELMASDKRSGVRSRNGMGEPRPQYESLQARMKALSPSNS 269

Query: 121  PQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKK 179
               FSLKVS+   NS+IPEG+AGS  R+ILSEGG+LQV+YVK+LEKG+TYEI++R+LPKK
Sbjct: 270  TPNFSLKVSEAAMNSAIPEGSAGSTARTILSEGGVLQVHYVKILEKGDTYEIVKRSLPKK 329

Query: 180  VKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK 239
            +K K DP+VIEK E +KI K W+NIVR+DI K+H+ F TFH+K  IDAKRFA+ CQREV+
Sbjct: 330  LKAKNDPAVIEKTERDKIRKAWINIVRRDIAKHHRIFTTFHRKLSIDAKRFADGCQREVR 389

Query: 240  MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAK 299
            MKV RS K+ R A IRTRK++RDMLLFWKR DK+MAE RK++E+EAAEA KREQE RE+K
Sbjct: 390  MKVGRSYKIPRTAPIRTRKISRDMLLFWKRYDKQMAEERKKQEKEAAEAFKREQEQRESK 449

Query: 300  RQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPE 359
            RQQQRLNFLI+QTELYSHFMQNK+ S PSE LP+G++ P D E+L  +S  EP E EDPE
Sbjct: 450  RQQQRLNFLIKQTELYSHFMQNKTDSNPSEALPIGDENPID-EVLPETSAAEPSEVEDPE 508

Query: 360  EAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPS 419
            EAELK++ L+AAQ+AVSKQK +T+ FDTE  KLR+ ++ E  + D+SV+GS NIDLHNPS
Sbjct: 509  EAELKEKVLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPS 568

Query: 420  TMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479
            TMPVTSTVQTPELFKG+LKEYQ+KGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL
Sbjct: 569  TMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 628

Query: 480  AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRR 539
            AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQER +LRKNINPKR+YRR
Sbjct: 629  AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRR 688

Query: 540  DAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLT 599
            DAGFHILITSYQLLV DEKYFRRVKWQYMVLDEAQAIKSS+SIRWKTLLSFNCRNRLLLT
Sbjct: 689  DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLT 748

Query: 600  GTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILK 659
            GTPIQNNMAELWALLHFIMP LFD+H+QFNEWFSKGIE+HAEHGGTLNEHQLNRLHAILK
Sbjct: 749  GTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILK 808

Query: 660  PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI 719
            PFMLRRVKKDV+SELTTKTEV VHCKLSSRQQAFYQAIKNKISLA LFD++RG   +KK+
Sbjct: 809  PFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKV 868

Query: 720  LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEY 779
            LNLMNIVIQLRKVCNHPELFERNEGSSYLYFG   NSLLP PFGELED+ +SG +NPI Y
Sbjct: 869  LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGVTSNSLLPHPFGELEDVHYSGGQNPIIY 928

Query: 780  KIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKS 839
            KIPK++HQE+LQ+SE  CS+VG GISRE F K FNI+S E + +SIF   SG D     S
Sbjct: 929  KIPKLLHQEVLQNSETFCSSVGRGISRESFLKHFNIYSPEYILKSIFPSDSGVDQVVSGS 988

Query: 840  ETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHP 899
              FGF+ LMDLSP+EV +LA  S  ERLLF++LRW+RQFLD +++  ME+ DG+L++N+ 
Sbjct: 989  GAFGFSRLMDLSPSEVGYLALCSVAERLLFSILRWERQFLDELVNSLMESKDGDLSDNNI 1048

Query: 900  DRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF 959
            +R K +AVTR+LL+PS+ ETN  +R+ + GP     E LV+SHQ+R LS+IKLL++ YT+
Sbjct: 1049 ERVKTKAVTRMLLMPSKVETNFQKRRLSTGPTRPSFEALVISHQDRFLSSIKLLHSAYTY 1108

Query: 960  IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGG-PHQLIQE 1018
            IP+A+APP+++ CSDRN  YR+TEE H PWLKRLLIGFARTSE  GPRKP   PH LIQE
Sbjct: 1109 IPKARAPPVSIHCSDRNSAYRVTEELHQPWLKRLLIGFARTSEANGPRKPNSFPHPLIQE 1168

Query: 1019 IDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLF 1078
            IDSELPV +PALQLT++IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRA NHRVLLF
Sbjct: 1169 IDSELPVVQPALQLTHRIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLF 1228

Query: 1079 AQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138
            AQMTKMLNILEDYMNYRKY+YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI
Sbjct: 1229 AQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1288

Query: 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLC 1181
            NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV+ +  +C
Sbjct: 1289 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLIC 1331

DNA helicase and probable main scaffold component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q6ZPV2\|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULG1\|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2	Back alignment and function description

>sp\|Q1DUF9\|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS) GN=INO80 PE=3 SV=1	Back alignment and function description

>sp\|Q0CA78\|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1	Back alignment and function description

>sp\|Q6BGY8\|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=INO80 PE=3 SV=2	Back alignment and function description

>sp\|Q2UTQ9\|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ino80 PE=3 SV=1	Back alignment and function description

>sp\|A7TJI3\|INO80_VANPO Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1	Back alignment and function description

>sp\|O14148\|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ino80 PE=1 SV=4	Back alignment and function description

>sp\|A1C9W6\|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1196
224139776		1540	chromatin remodeling complex subunit [Po	0.986	0.766	0.816	0.0
297739617		1557	unnamed protein product [Vitis vinifera]	0.987	0.758	0.809	0.0
225441914		1563	PREDICTED: DNA helicase INO80-like [Viti	0.987	0.755	0.809	0.0
356572002		1531	PREDICTED: DNA helicase INO80-like isofo	0.980	0.766	0.774	0.0
449449819		1501	PREDICTED: DNA helicase INO80-like [Cucu	0.978	0.779	0.785	0.0
30694618		1507	DNA helicase INO80 complex-like 1 [Arabi	0.986	0.783	0.762	0.0
6735309		1496	helicase-like protein [Arabidopsis thali	0.987	0.789	0.761	0.0
356572004		1542	PREDICTED: DNA helicase INO80-like isofo	0.980	0.760	0.767	0.0
297817054		1507	hypothetical protein ARALYDRAFT_907192 [	0.986	0.783	0.759	0.0
334186052		1540	DNA helicase INO80 complex-like 1 [Arabi	0.986	0.766	0.740	0.0

>gi\|224139776\|ref\|XP_002323271.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222867901\|gb\|EEF05032.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2026 bits (5249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 973/1192 (81%), Positives = 1074/1192 (90%), Gaps = 12/1192 (1%)

Query: 1    METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPS 60
            METTS+W+NDI P +  +YHE EFTPK+ YEP YLDIG+G+TYRIP SYDKLA SLNLPS
Sbjct: 152  METTSEWVNDIVPSKRGDYHEPEFTPKIYYEPPYLDIGDGVTYRIPPSYDKLAASLNLPS 211

Query: 61   FSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNS 120
            FSD++VEEFYLKGTLDLGSLAAM ANDKRFG RSR GMGEP+ QYESLQ RLKAL ASNS
Sbjct: 212  FSDMRVEEFYLKGTLDLGSLAAMTANDKRFGLRSRAGMGEPQLQYESLQGRLKALAASNS 271

Query: 121  PQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKK 179
             +KFSLK+S+   NSSIPEGAAG+I+RSILSEGG++QVYYVKVLEKG+TYEIIER+LPKK
Sbjct: 272  AEKFSLKISEEALNSSIPEGAAGNIKRSILSEGGVMQVYYVKVLEKGDTYEIIERSLPKK 331

Query: 180  VKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQRE-- 237
             K+ KDPSVIE+EEME+IGKVWVNIVR+DIPK+H+ F TFH+KQ IDAKRF+E CQRE  
Sbjct: 332  PKIIKDPSVIEREEMERIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDAKRFSENCQREAC 391

Query: 238  ---VKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQE 294
               VK+KVSRSLK+M+GAAIRTRKLARDMLLFWKRVDKEMAEVRK+EEREAAEALKREQE
Sbjct: 392  IYHVKLKVSRSLKIMKGAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALKREQE 451

Query: 295  LREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGE 354
            LREAKRQQQRLNFLIQQTEL+SHFM NK +SQPSE LP+ ++K +DQ +  S++E  P  
Sbjct: 452  LREAKRQQQRLNFLIQQTELFSHFMSNKPNSQPSEALPIADEKTDDQVMDCSTAEAGPDP 511

Query: 355  EEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNID 414
            EEDPE+AEL+KEALKAAQ+AVSKQK+LT+ FD+ECSKLRE AD E  + D SVAGS NID
Sbjct: 512  EEDPEDAELRKEALKAAQDAVSKQKLLTSAFDSECSKLREVADIEGPITDASVAGSSNID 571

Query: 415  LHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQ-----GLNGILADEMGLGKT 469
            L  PSTMPVTSTV+TPELFKGSLKEYQLKGLQWLVNCYEQ     GLNGILADEMGLGKT
Sbjct: 572  LQTPSTMPVTSTVKTPELFKGSLKEYQLKGLQWLVNCYEQSMLSQGLNGILADEMGLGKT 631

Query: 470  IQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK 529
            IQAMAFLAHLAEEKNIWGPFL+VAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK
Sbjct: 632  IQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK 691

Query: 530  NINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589
            NINPKRLYRR+AGFHILITSYQLLV+DEKYFRRVKWQYMVLDEAQAIKS+NSIRWKTLLS
Sbjct: 692  NINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLS 751

Query: 590  FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEH 649
            FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIE+HAEHGGTLNEH
Sbjct: 752  FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH 811

Query: 650  QLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDN 709
            QLNRLHAILKPFMLRRVKKDV+SELT KTEV VHCKLSSRQQAFYQAIKNKISLA LFD+
Sbjct: 812  QLNRLHAILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDS 871

Query: 710  SRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDIS 769
            +RGHLNEKKI+NLMNIVIQLRKVCNHPELFERNEG +Y YFGEIPNS LP PFGELEDI 
Sbjct: 872  NRGHLNEKKIMNLMNIVIQLRKVCNHPELFERNEGITYFYFGEIPNSFLPSPFGELEDIH 931

Query: 770  FSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLA 829
            +SG RNPI YKIPK+VH EI+QSSE+LCSA+G G  RE FQK FNIFS+ENVY+S+F+L 
Sbjct: 932  YSGGRNPITYKIPKVVHNEIVQSSEVLCSAIGRGFGRESFQKHFNIFSSENVYRSVFALD 991

Query: 830  SGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEA 889
            + SD+  +KS TFGF+HLMDLSPAEVAFLA  SFMERLLF ++RW R+FLDGILD+ M+ 
Sbjct: 992  NSSDSLLIKSGTFGFSHLMDLSPAEVAFLAISSFMERLLFFIMRWGRRFLDGILDLLMKD 1051

Query: 890  MDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSN 949
            ++ + + N+ ++ KVRAVTR+LL+PSRSET++LRRK   GP   P E LV SHQ+RLLSN
Sbjct: 1052 IEND-HSNYLEKHKVRAVTRMLLMPSRSETDILRRKMATGPADTPFEALVNSHQDRLLSN 1110

Query: 950  IKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKP 1009
            IKLL++TYTFIP+ +APPI  QCSDRNF Y+M EE H P +KRLL GFARTS   GPRKP
Sbjct: 1111 IKLLHSTYTFIPRTRAPPIGGQCSDRNFAYQMMEELHQPMVKRLLTGFARTSTFNGPRKP 1170

Query: 1010 GGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR 1069
               H LIQEIDSELPV++PALQLTY+IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR
Sbjct: 1171 EPLHPLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR 1230

Query: 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLL 1129
            AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ R+DIFVFLL
Sbjct: 1231 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRNDIFVFLL 1290

Query: 1130 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLC 1181
            STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV+ +  +C
Sbjct: 1291 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLIC 1342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297739617\|emb\|CBI29799.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225441914\|ref\|XP_002278785.1\| PREDICTED: DNA helicase INO80-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356572002\|ref\|XP_003554159.1\| PREDICTED: DNA helicase INO80-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|449449819\|ref\|XP_004142662.1\| PREDICTED: DNA helicase INO80-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30694618\|ref\|NP_191289.2\| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] gi\|238065083\|sp\|Q8RXS6.2\|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gi\|332646116\|gb\|AEE79637.1\| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6735309\|emb\|CAB68136.1\| helicase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356572004\|ref\|XP_003554160.1\| PREDICTED: DNA helicase INO80-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|297817054\|ref\|XP_002876410.1\| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp. lyrata] gi\|297322248\|gb\|EFH52669.1\| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334186052\|ref\|NP_001190117.1\| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] gi\|332646117\|gb\|AEE79638.1\| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1196
ZFIN\|ZDB-GENE-041014-72		1582	ino80 "INO80 homolog (S. cerev	0.453	0.342	0.491	6.2e-201
DICTYBASE\|DDB_G0292358		2129	ino80 "CHR group protein" [Dic	0.647	0.363	0.465	7.3e-197
UNIPROTKB\|E1BAN8		1566	INO80 "Uncharacterized protein	0.452	0.345	0.490	3.4e-193
UNIPROTKB\|Q9ULG1		1556	INO80 "DNA helicase INO80" [Ho	0.452	0.347	0.490	5.5e-193
UNIPROTKB\|F1NYY9		1564	INO80 "Uncharacterized protein	0.452	0.345	0.492	5.5e-193
MGI\|MGI:1915392		1559	Ino80 "INO80 homolog (S. cerev	0.452	0.347	0.492	9e-193
UNIPROTKB\|F1PKX5		1560	INO80 "Uncharacterized protein	0.452	0.346	0.490	1.1e-192
UNIPROTKB\|F1SSV0		1566	INO80 "Uncharacterized protein	0.452	0.345	0.490	1.5e-192
RGD\|1310969		1553	Ino80 "INO80 homolog (S. cerev	0.447	0.344	0.490	2.4e-190
FB\|FBgn0086613		1638	Ino80 "Ino80" [Drosophila mela	0.445	0.325	0.460	1.8e-185

ZFIN\|ZDB-GENE-041014-72 ino80 "INO80 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1348 (479.6 bits), Expect = 6.2e-201, Sum P(4) = 6.2e-201
 Identities = 271/551 (49%), Positives = 345/551 (62%)

Query:   199 KVWVNIVRKDIPKYXXXXXXXXXXXXIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRK 258
             KVW+ I +K+IPK              +A++ A  C REV+    ++ K  +    R R+
Sbjct:   280 KVWLTIAKKEIPKAFKQKVSARNFVLTNARKLAHQCMREVRRAAIQAQKNCKETLPRARR 339

Query:   259 LARDMLLFWKRVDXXXXXXXXXXXXXXXXXXXXXXXXXXXKRQQQRLNFLIQQTELYSHF 318
             L ++MLL+WK+ +                           KRQQ++LNFLI QTELY+HF
Sbjct:   340 LTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHF 399

Query:   319 MQNKSSS----QPSEVLPVGNDKPNDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQNA 374
             M  K ++       E+L    D  + +                             A+ A
Sbjct:   400 MGGKQNAGGDCTQEEILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSDYYKSQALKNAKEA 459

Query:   375 VSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFK 434
                 +  T  FD E    R  A   AA +  S  G  +  L NPS +     +  P +F 
Sbjct:   460 YQIHQARTRLFDEEAKDSR-CASLHAASMSGSGFGE-SYSLSNPS-IQAGEDIPQPTIFN 516

Query:   435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494
             G LK YQLKG+ WL N YEQG+NGILADEMGLGKT+Q++A LAHLAE +NIWGPFL+++P
Sbjct:   517 GKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISP 576

Query:   495 ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV 554
             AS LNNW  E SRF P  K LPYWG   +R V+RK  + K LY ++A FH++ITSYQL+V
Sbjct:   577 ASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVV 636

Query:   555 ADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALL 614
              D KYF+RVKWQYMVLDEAQA+KSS S+RWK LL F CRNRLLLTGTPIQN MAELWALL
Sbjct:   637 QDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALL 696

Query:   615 HFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISEL 674
             HFIMPTLFDSHE+FNEWFSK IESHAE+   ++E+QL+RLH ILKPFMLRR+KKDV +EL
Sbjct:   697 HFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 756

Query:   675 TTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNE--KKILNLMNIVIQLRKV 732
             + K E++ +C+L+SRQ+  YQA+KNKIS+  L  +S G   +      +LMN+V+Q RKV
Sbjct:   757 SDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKV 816

Query:   733 CNHPELFERNE 743
             CNHP+LFER E
Sbjct:   817 CNHPDLFERQE 827

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE\|DDB_G0292358 ino80 "CHR group protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BAN8 INO80 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULG1 INO80 "DNA helicase INO80" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYY9 INO80 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1915392 Ino80 "INO80 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKX5 INO80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SSV0 INO80 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310969 Ino80 "INO80 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0086613 Ino80 "Ino80" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXS6	INO80_ARATH	3, ., 6, ., 4, ., 1, 2	0.7624	0.9866	0.7830	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	0.946
3rd Layer	3.6.4	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHR929	chromatin remodeling complex subunit (1541 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1196
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	3e-99
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	3e-86
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	7e-67
pfam13892		140	pfam13892, DBINO, DNA-binding domain	1e-62
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	7e-45
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	4e-29
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	9e-29
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	4e-28
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	4e-22
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	5e-22
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	1e-21
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	4e-04

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

 Score =  317 bits (814), Expect = 3e-99
 Identities = 132/307 (42%), Positives = 185/307 (60%), Gaps = 13/307 (4%)

Query: 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLA-HLAEEKNIWGPFLVVAPASVL 498
           YQL+G+ WL++    GL GILADEMGLGKT+Q +A LA +L E K+  GP LVV P S L
Sbjct: 1   YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60

Query: 499 NNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLL---VA 555
           +NW +E  ++ P L+ + Y G  +ER  LR++     + +R   + ++IT+Y++L     
Sbjct: 61  HNWLNEFEKWAPALRVVVYHGDGRERSKLRQS-----MAKRLDTYDVVITTYEVLRKDKK 115

Query: 556 DEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLH 615
                 +V+W  +VLDEA  +K+S S  +K L     RNRLLLTGTPIQNN+ ELWALL+
Sbjct: 116 LLSLLNKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLN 175

Query: 616 FIMPTLFDSHEQFNEWFSKGIESHA---EHGGTLNEHQLNRLHAILKPFMLRRVKKDVIS 672
           F+ P  F S + F EWF+  I + A          +  +NRLH +LKPF+LRR K DV  
Sbjct: 176 FLRPGPFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEK 235

Query: 673 ELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKV 732
            L  KTE +++C LS  Q+  Y+ +  K     L     G      I +L+N+++QLRK+
Sbjct: 236 SLPPKTEHVLYCNLSDEQRKLYKKLLTK-RRLALSFAVEGGEKNVGIASLLNLIMQLRKI 294

Query: 733 CNHPELF 739
           CNHP LF
Sbjct: 295 CNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|206063 pfam13892, DBINO, DNA-binding domain	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1196
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
PF13892		139	DBINO: DNA-binding domain	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
PHA02558		501	uvsW UvsW helicase; Provisional	99.93
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.92
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.92
KOG1123		776	consensus RNA polymerase II transcription initiati	99.91
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.79
PTZ00110		545	helicase; Provisional	99.79
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.77
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.77
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.77
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.77
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.75
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.75
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.75
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.75
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.74
KOG0354		746	consensus DEAD-box like helicase [General function	99.74
PTZ00424		401	helicase 45; Provisional	99.73
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.72
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.71
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.7
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.67
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.67
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.66
PRK10689		1147	transcription-repair coupling factor; Provisional	99.64
PRK13767		876	ATP-dependent helicase; Provisional	99.64
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.64
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.64
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.59
PRK02362		737	ski2-like helicase; Provisional	99.58
PRK01172		674	ski2-like helicase; Provisional	99.55
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.55
PRK00254		720	ski2-like helicase; Provisional	99.53
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.53
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.52
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.46
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.45
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.44
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.42
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.4
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.38
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.37
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.35
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.34
PHA02653		675	RNA helicase NPH-II; Provisional	99.32
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.31
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.29
PRK09401		1176	reverse gyrase; Reviewed	99.28
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.28
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.26
PRK05580		679	primosome assembly protein PriA; Validated	99.23
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.19
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.19
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.15
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.15
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.14
COG4096		875	HsdR Type I site-specific restriction-modification	99.12
COG1205		851	Distinct helicase family with a unique C-terminal	99.1
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.1
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.09
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.07
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.07
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.03
COG4889		1518	Predicted helicase [General function prediction on	99.03
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.02
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.02
COG1204		766	Superfamily II helicase [General function predicti	99.02
PRK09694		878	helicase Cas3; Provisional	99.01
PRK14701		1638	reverse gyrase; Provisional	98.99
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	98.97
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	98.91
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	98.88
KOG4284		980	consensus DEAD box protein [Transcription]	98.83
PRK13107		908	preprotein translocase subunit SecA; Reviewed	98.82
PRK12904		830	preprotein translocase subunit SecA; Reviewed	98.82
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	98.79
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	98.77
KOG0343		758	consensus RNA Helicase [RNA processing and modific	98.75
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	98.7
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	98.69
COG1202		830	Superfamily II helicase, archaea-specific [General	98.68
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	98.64
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	98.63
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	98.59
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	98.58
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	98.53
KOG0334		997	consensus RNA helicase [RNA processing and modific	98.5
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.46
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.41
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.38
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	98.37
PRK05298		652	excinuclease ABC subunit B; Provisional	98.37
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.33
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	98.31
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	98.3
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	98.26
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.19
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	98.12
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	98.11
PRK15483		986	type III restriction-modification system StyLTI en	98.11
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	98.02
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	97.95
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	97.93
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	97.88
COG1198		730	PriA Primosomal protein N' (replication factor Y)	97.85
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	97.85
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.76
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	97.71
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	97.69
PF13871		278	Helicase_C_4: Helicase_C-like	97.67
COG0610		962	Type I site-specific restriction-modification syst	97.67
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	97.63
KOG0327		397	consensus Translation initiation factor 4F, helica	97.51
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.49
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.49
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.47
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	97.45
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	97.42
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	97.35
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	97.31
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.28
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.27
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	97.27
KOG0353		695	consensus ATP-dependent DNA helicase [General func	97.27
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	97.19
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	97.18
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.17
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.13
PRK10536		262	hypothetical protein; Provisional	97.05
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	96.96
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	96.64
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.47
CHL00122		870	secA preprotein translocase subunit SecA; Validate	96.4
KOG1803		649	consensus DNA helicase [Replication, recombination	96.24
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.17
KOG0347		731	consensus RNA helicase [RNA processing and modific	96.15
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	96.03
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.01
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	96.0
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	95.96
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	95.95
PRK14873		665	primosome assembly protein PriA; Provisional	95.94
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	95.89
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.74
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	95.57
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.34
KOG0346		569	consensus RNA helicase [RNA processing and modific	95.3
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	95.07
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	94.84
KOG1131		755	consensus RNA polymerase II transcription initiati	94.73
KOG0347		731	consensus RNA helicase [RNA processing and modific	94.67
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	94.62
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	94.6
KOG1805		1100	consensus DNA replication helicase [Replication, r	94.28
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	94.21
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	94.13
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	93.97
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	93.39
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	93.26
PRK04296		190	thymidine kinase; Provisional	93.13
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	92.76
PRK10875		615	recD exonuclease V subunit alpha; Provisional	92.14
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	92.09
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	92.05
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	91.8
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	90.99
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	90.99
smart00382		148	AAA ATPases associated with a variety of cellular	90.94
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	90.81
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	90.51
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	90.43
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	89.84
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	89.48
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	89.3
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	88.74
PLN03025		319	replication factor C subunit; Provisional	88.71
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	88.55
PHA02533		534	17 large terminase protein; Provisional	88.4
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	88.17
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	87.68
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	87.62
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	87.49
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	87.26
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	87.16
PHA03333		752	putative ATPase subunit of terminase; Provisional	87.01
PRK09112		351	DNA polymerase III subunit delta'; Validated	86.85
PRK12402		337	replication factor C small subunit 2; Reviewed	86.77
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	86.72
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	86.58
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	86.42
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	86.28
PF07529		73	HSA: HSA; InterPro: IPR006562 This domain of unkno	86.24
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	86.23
PRK08084		235	DNA replication initiation factor; Provisional	86.22
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	86.01
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	85.89
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	85.51
PRK06526		254	transposase; Provisional	85.51
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	85.49
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	85.34
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	85.32
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	85.3
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	85.27
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	85.18
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	85.1
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	85.02
KOG0346		569	consensus RNA helicase [RNA processing and modific	84.96
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	84.78
CHL00181		287	cbbX CbbX; Provisional	84.77
PRK07940		394	DNA polymerase III subunit delta'; Validated	84.73
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	84.53
PRK08181		269	transposase; Validated	83.94
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	83.9
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	83.73
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	83.58
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	83.57
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	83.54
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	83.38
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	83.36
smart00573		73	HSA domain in helicases and associated with SANT d	82.85
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	82.79
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	81.86
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	81.81
PRK05298		652	excinuclease ABC subunit B; Provisional	81.76
PRK07952		244	DNA replication protein DnaC; Validated	81.62
PRK05707		328	DNA polymerase III subunit delta'; Validated	81.59
PRK08769		319	DNA polymerase III subunit delta'; Validated	81.5
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	81.48
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	81.3
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	81.27
PF13245		76	AAA_19: Part of AAA domain	81.25
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	81.21
PRK14974		336	cell division protein FtsY; Provisional	81.02
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	80.79
COG0464		494	SpoVK ATPases of the AAA+ class [Posttranslational	80.79
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	80.31

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=6.2e-243  Score=2047.95  Aligned_cols=1013  Identities=53%  Similarity=0.831  Sum_probs=904.2

Q ss_pred             CccccchhccCCCCCCCCcCCCCCCccccccCceeecCCCeeeecCcchhcccccCCCCCCccceeeeeeeecccchhhH
Q 000994            1 METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSL   80 (1196)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (1196)
                      +.+..|+.+|..++.+|.|||+|.+|++.|||.|+|||||+.|+|||.|+||..|||||+||+|+|+||+++||+|+++|
T Consensus       150 ~dns~e~~~D~dsh~r~~~~d~d~~~k~a~e~~~~~i~d~~i~~ie~ry~kl~aSl~l~s~s~i~~ke~n~~~T~~~r~L  229 (1185)
T KOG0388|consen  150 MDNSPEFAADVDSHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIEPRYDKLVASLNLPSFSDIHVKEFNLKGTLDLRSL  229 (1185)
T ss_pred             cCCCccccccCChhhhcchhhhccchhhhccccccCcCCCccccCcchhhhhhhhcCCCchhHHHHHHHhhcccccHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccCCCcccCCCCCCcchhHHHHHHHHHhccCCCCcceeeeeccCC-CCCCCCCcccchhhhhcccCCeeEEEE
Q 000994           81 AAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYY  159 (1196)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (1196)
                      +.||++||+-|.|+|.|||||+|||++++++||++++.+++..|++.++||+ +|.+|++.+|...+.++++||..+|++
T Consensus       230 ~~~~~s~K~s~v~~r~~~n~p~~~y~~~~sklk~l~~~~~~~~~k~~indAa~~s~~~k~~~g~~a~~l~n~~~~~e~h~  309 (1185)
T KOG0388|consen  230 AELMASDKRSGVRSRNGMNEPRPQYEMTGSKLKDLLKVYERRGEKLNINDAANGSRHIKKCVGDVANDLLNEGGYPEVHH  309 (1185)
T ss_pred             HHHHhhcchhhhhhccCCCCCCcchhhhhhHHHHhhhhcccchhhhhhhhhhccchhhhcccccchhhhhccCCCchhHH
Confidence            9999999999999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             EEEecCCcchhhhhccccccccccCCchhhhHHHHHHHHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 000994          160 VKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK  239 (1196)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1196)
                      +|.+++||.++|+.+.+|+|...+.+|..+++-+ .++.++|.+||||||+||||+++++++++.+|+||+|++|+||+|
T Consensus       310 ~r~l~kgd~~e~t~~~~~~k~nak~d~av~~k~e-~~~~~~w~~iaRkdi~k~~riiqq~q~~rstnakk~s~lC~REar  388 (1185)
T KOG0388|consen  310 LRKLAKGDISEITNEMLSQKGNAKTDPAVISKTE-RKITAEWISIARKDIRKVHRIIQQYQSARSTNAKKTSILCAREAR  388 (1185)
T ss_pred             HHHhccccHHHHHHhhcccccccccchhhhhhHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999998887644 489999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 000994          240 MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM  319 (1196)
Q Consensus       240 ~~~~~~~~~~k~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~  319 (1196)
                      +|+.|+.|..|+.|+||||++|||+.|||||||+|||+|||+||||+|++|+|+|+||.+||+|||||||||||||||||
T Consensus       389 r~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskRQarklnfLltQTELySHFi  468 (1185)
T KOG0388|consen  389 RWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKRQARKLNFLLTQTELYSHFI  468 (1185)
T ss_pred             HhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCchhhcccCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhccchhhhHHHhhhhhHH
Q 000994          320 QNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTE  399 (1196)
Q Consensus       320 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~  399 (1196)
                      |+|+...+++++|.+..         +.+..+++.-+++|++.+++.++++||+|++ ++..+.+||.+-...++..+.+
T Consensus       469 ~rK~d~n~se~lp~~~n---------e~sa~e~n~~~d~eea~l~~~~lraAq~Av~-a~~~t~afd~e~~~~~ntse~e  538 (1185)
T KOG0388|consen  469 GRKNDCNLSEALPAERN---------EISAGEPNGMKDYEEAMLQKLRLRAAQDAVS-AKQITDAFDTEFGAERNTSEFE  538 (1185)
T ss_pred             hhcccCCccccCCcccc---------cccccCcccCCChHHHHHHHHHHHHHHHHHh-HHHhhhhhhhhhhhcccccccc
Confidence            99999999998887543         1233455566888999999999999999998 8999999998876655443322


Q ss_pred             HhhhhhcccCCCCcccCCCCCCCCCCcccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994          400 AAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL  479 (1196)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l  479 (1196)
                              ...+++++++|+.+....+|+||+.|.|+|++||++||+||+++|++|.+||||||||||||+|+|+++++|
T Consensus       539 --------~~e~e~n~q~~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhL  610 (1185)
T KOG0388|consen  539 --------GPENEGNFQGPTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHL  610 (1185)
T ss_pred             --------CccccccccCCccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHH
Confidence                    235678899999888788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh
Q 000994          480 AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY  559 (1196)
Q Consensus       480 ~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~  559 (1196)
                      ++.+++|||||||+|+|+|+||.+||.+|+|++++++|||+..+|+.++++|+++.+|++..+|||+||||++++.|.++
T Consensus       611 aE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky  690 (1185)
T KOG0388|consen  611 AETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKY  690 (1185)
T ss_pred             HHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccc
Q 000994          560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESH  639 (1196)
Q Consensus       560 l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~  639 (1196)
                      |++++|+||||||||.||++.|.+|+.|++|+|++|||||||||||+++|||+|||||||.+|+++++|.+||++.|+++
T Consensus       691 ~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEsh  770 (1185)
T KOG0388|consen  691 LQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESH  770 (1185)
T ss_pred             HHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcchHHHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhH
Q 000994          640 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI  719 (1196)
Q Consensus       640 a~~~~~~~~~ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~  719 (1196)
                      ++.+++++++||.|||+|||||||||+|++|.+||+.|+|++|+|+||.+|+.+|+.++++|+..+              
T Consensus       771 Ae~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E--------------  836 (1185)
T KOG0388|consen  771 AEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSME--------------  836 (1185)
T ss_pred             HHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHH--------------
Confidence            999999999999999999999999999999999999999999999999999999999999987433              


Q ss_pred             HHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhc
Q 000994          720 LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSA  799 (1196)
Q Consensus       720 ~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~  799 (1196)
                        +.++|||||||||||+||+|.+.+|.++++...         .+.+| +|+.+|||.|.+|+|++.+.+.        
T Consensus       837 --~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~---------nl~dv-~S~Grnpi~ykiP~L~~~d~le--------  896 (1185)
T KOG0388|consen  837 --MENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD---------NLGDV-VSFGRNPIDYKIPSLVAKDALE--------  896 (1185)
T ss_pred             --HHHHHHHHHHhcCChHHHhhcCCcceeEEEccc---------CHHHH-HhCCCCceeecchHHHHHHHHH--------
Confidence              336999999999999999999999998886543         35666 8889999999999999999873        


Q ss_pred             ccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 000994          800 VGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFL  879 (1196)
Q Consensus       800 ~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~  879 (1196)
                                ..+||||  +.++.-..-.     ....+.+.+.|-  ..+                             
T Consensus       897 ----------~~~fniy--e~i~~~~g~~-----~~v~Geg~~~w~--~~l-----------------------------  928 (1185)
T KOG0388|consen  897 ----------MFRFNIY--EMIERINGLR-----RIVNGEGPNAWY--LRL-----------------------------  928 (1185)
T ss_pred             ----------HHHHhHH--HHHHHHhhhH-----hhhcCCCcchhc--ccc-----------------------------
Confidence                      3467777  3333211100     001112222221  000                             


Q ss_pred             chhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccc
Q 000994          880 DGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF  959 (1196)
Q Consensus       880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1196)
                            .++...++......+... +++++.++.|.....+..+..+              .++     ..++.+..++|
T Consensus       929 ------~~e~k~G~~~~~n~e~~~-Kavtr~ll~p~~~~~e~~~rvi--------------~~e-----~~~L~~~~y~y  982 (1185)
T KOG0388|consen  929 ------SLEFKYGGYVFRNVEEAG-KAVTRNLLNPESSLLESMRRVI--------------DEE-----AYRLQRHVYCY  982 (1185)
T ss_pred             ------eeeeccCCcccccHHHHH-HHHHHHhcCcccchhHHHHHHh--------------hHH-----HHHhhhheeee
Confidence                  011122222222222222 6788888888766555443321              122     25677889999


Q ss_pred             cCCCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCC
Q 000994          960 IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGS 1039 (1196)
Q Consensus       960 ~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 1039 (1196)
                      .|.+.+||+-+..                             +.+.|               +.+...+.+++...++  
T Consensus       983 ~P~v~apPvLI~~-----------------------------ead~P---------------eId~E~~~~pLn~~i~-- 1016 (1185)
T KOG0388|consen  983 SPVVAAPPVLISN-----------------------------EADLP---------------EIDLENRHIPLNTTIY-- 1016 (1185)
T ss_pred             ccccCCCCeeeec-----------------------------ccCCC---------------CCCccccCccccccee--
Confidence            9999999984421                             11111               1122223333333333  


Q ss_pred             CCCCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHc
Q 000994         1040 CPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus      1040 ~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
                      +|||++|     +++||||.+||+||.+|+++|||||+|+|||+|||+||+||.++||+|+|||||++.++|+++|.|||
T Consensus      1017 ~Ppm~~F-----itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ 1091 (1185)
T KOG0388|consen 1017 VPPMNTF-----ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ 1091 (1185)
T ss_pred             cCcHHhh-----hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc
Confidence            8888877     99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994         1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus      1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
                      + ++||||||||||||+||||||||||||||+||||+.|+||||||||+||||+|||||||++|||||+|+++
T Consensus      1092 ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~r 1163 (1185)
T KOG0388|consen 1092 A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLER 1163 (1185)
T ss_pred             C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHH
Confidence            9 99999999999999999999999999999999999999999999999999999999999999999999965

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>PF13892 DBINO: DNA-binding domain	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes []	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00573 HSA domain in helicases and associated with SANT domains	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1196
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		7e-56
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		2e-31
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		6e-43
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		2e-13
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		6e-41
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		1e-12
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		6e-23
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		2e-18
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		2e-13

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800