Citrus Sinensis ID: 001005

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190--

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

cccEEEEEEEEEEEEEccccccEEEEEEEEEEEcccccccHHHHEEEEEEEEEccccccccccccccccEEEccccEEEEEcccccccccccccccccccccEEEEEEcccEEEccEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHcccccEEEEEEEEEEEHHHHHHcccEEEEEccccEEEEEEEEEccEEEEEEcccEEEEEccEEEEccEEEEccccccccEEcEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEccccccccccccccccEEccccccccccccccccccccEEccccccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccEEEEEccccEEEEEEEEEccccccccccccccccccEEEEEcccccccccEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccEEEEEEcccccccccEEEcEEEEEEcccccccccccccccccHHHcccccccccccccccccHHHHHHccccccHHHcccccccccEEccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccc

cccEEEEEEEEEEEEEcHHHHcHHEEEEEEEEEccccccHHHHHHEEEcEEEEEcccccccccccccccEEcccccEEEEEcccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEHccEEEEEcccEEEEcccccEccccEEEccccccHHHHHEEEEHHEEEEEEccccEEEccccccccccccccEccccccccHHHccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccEcccccccccccccccccEEEcccEEcccccccccccccEcccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccccccccEEccccccccccccHHHHHHHHHHHHcccccEEccccccEEEcccccccccEEEEEEccccccccEEEEEEEEEEEEEccccccccccccccccEcccccccccccEEEEccccccEEccccccHHHcccccccHccccEEEEEEcccccccccccEEccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccccHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHccEEcccccHEEEEHHHHcccccccccccHHHHccccEEEEEEcccccccccEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHccEEEEEHHEHHHHccHHEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEccHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccc

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMfdnwnsnapSLLAMLVTYVLIRgnsfacpdnaggagtlydavprtltvsnynmstdTETLllefpnqplwtnvyvqncaratVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEmlvdgggdATVATSLLEASNLIVLKEFSIIHSNANLEVHGQgllnlsgpgdrIEAQRLVLALFYSIhvgpgsvlrsplenattdavtprlyceiqdcpvellhppedcnvnsslsFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgmgctggvgrgkvigngvgsggghggkgglgcfndscveggisygnanlpcelgsgsgndtsgnstagggiivmgsfehplsslsvegsvkadgqsfedlstkknyvvrngsiggagggsgGTILLFLHTldigdsavlssvggygshmggggggggrihfhwsdiptgdvyqpiasvrgsiriggglgghelgggengtttgkacpkglygifceecpvgtyknvtgsdkslchqcppqefphraVYISVrggiaetpcpyrciseryhmphcYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKfvgvdelpgpaptqhgsqidhsfpfLESLNEVLEtnraeeshshvhrmyfmgpntfsqpwhlphtppeqIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYeglkvaatPDLMLAYLDFFlggdekrtdlppclhhrfpmslifggdgsymapfslqnDNILTSLmsqlvpptICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLEthanptlqlhglRVDLAWFQATACGYCQYGLLVYAvggeneptsigsfdrgrlieresrvksidmenpsgrlreETLLTRAQRSSESYMKRkrshggiidtnnvqMLEERRDIFYFLSFIvhntkpvghqdLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILplgillpfpaginalfshgprrsvGLARVYALWNVTSLINVGVAFLCGYVhyssgsspnkkvpnfqpwnfsmdesewwifpAGLVLCKIFQSQLVNWHVANleiqdrtlysNDFELFWQS

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVgpgsvlrspleNATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGqsfedlstkknYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENeptsigsfdrgrlieresrvksidmenpsgrlreetlltraqrssesymkrkrshggiidtnnvqMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYssgsspnkkVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASgmgctggvgrgkvigngvgsggghggkgglgCFNDSCVEGGISYGNANLPCELgsgsgndtsgnstagggIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNgsiggagggsggTILLFLHTLDIGDSAVLSSVggygshmggggggggRIHFHWSDIPTGDVYQPIASVRGSIRIggglgghelgggengtttgKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWlfclllvgllillalvlsvARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDlvglvisvlllgdfslvlltllqlysislVDvflvlfilplgillpfpagiNALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

***RVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCE*****************GIIVMGSF***************************NYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVL*******************IHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDEL*****************FL******************VHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE**********************************************************IIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYS*********PNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFW**

**TRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLR**************LYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGK****************GLGCFNDSCVEGGISYGNANLP*********************IVMGSFEHPLSSLSVEGSVKAD**************************SGGTILLFLHTLDIG*********************GGRIHFHWSDIPTGDVYQPIASVRG*******************TTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKF*********************FPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE********************************************************GGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQ*

MATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTR*************SHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

*ATRVVVVEEFQLIYSADMMSQKFLCMVHCVMFDNWNSNAPSLLAMLVTYVLIRGNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELG**********STAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGP******SQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE**********************************************ESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSG***********PWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1192
296081597		1439	unnamed protein product [Vitis vinifera]	0.944	0.782	0.801	0.0
359475929		1416	PREDICTED: uncharacterized protein LOC10	0.925	0.778	0.795	0.0
255550884		1426	conserved hypothetical protein [Ricinus	0.928	0.776	0.814	0.0
224088972		1412	predicted protein [Populus trichocarpa]	0.915	0.772	0.781	0.0
224141605		1416	predicted protein [Populus trichocarpa]	0.921	0.775	0.794	0.0
449461397		1448	PREDICTED: uncharacterized protein LOC10	0.950	0.782	0.759	0.0
356510059		1447	PREDICTED: uncharacterized protein LOC10	0.952	0.784	0.783	0.0
356515645		1417	PREDICTED: uncharacterized protein LOC10	0.926	0.779	0.782	0.0
334187625		1476	uncharacterized protein [Arabidopsis tha	0.948	0.766	0.745	0.0
449507269		1417	PREDICTED: uncharacterized LOC101205923	0.924	0.777	0.747	0.0

>gi\|296081597\|emb\|CBI20602.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1721 bits (4457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1140 (80%), Positives = 1006/1140 (88%), Gaps = 14/1140 (1%)

Query: 55   GNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARAT 114
            G+SF CP+N+G AGT YDAVPR+L VSN N STDT+TLLLEFP QPLWTNVYV++ A+AT
Sbjct: 312  GSSFGCPENSGAAGTFYDAVPRSLIVSNNNRSTDTDTLLLEFPYQPLWTNVYVRDHAKAT 371

Query: 115  VPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKI 174
            VPLLWSRVQVQGQISL CGGVLSFGLAHYA SEFELLAEELLMSDS+IKVYGALRM+VK+
Sbjct: 372  VPLLWSRVQVQGQISLYCGGVLSFGLAHYALSEFELLAEELLMSDSIIKVYGALRMSVKM 431

Query: 175  FLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRI 234
            FLMWNS++L+DGGGDA VATSLLEASNL+VLKE S+IHSNANL VHGQGLLNLSGPGD I
Sbjct: 432  FLMWNSKLLIDGGGDANVATSLLEASNLVVLKESSVIHSNANLGVHGQGLLNLSGPGDWI 491

Query: 235  EAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSS 294
            EAQRLVL+LFYSIHVGPGSVLR PLENATTDAVTPRLYCE+QDCP ELLHPPEDCNVNSS
Sbjct: 492  EAQRLVLSLFYSIHVGPGSVLRGPLENATTDAVTPRLYCELQDCPTELLHPPEDCNVNSS 551

Query: 295  LSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNG 354
            LSFTLQICRVEDI V GL++GSVVHFHRARTI+VQSSG IS S MGCTGGVGRGK + +G
Sbjct: 552  LSFTLQICRVEDITVQGLIKGSVVHFHRARTIAVQSSGKISTSRMGCTGGVGRGKFLSSG 611

Query: 355  VGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSG--NDTSGNSTAGGGIIVMG 412
            +GSGGGHGGKGG GC+  SCVEGGISYGNA+LPCELGSGSG  NDT   STAGGG+IVMG
Sbjct: 612  LGSGGGHGGKGGDGCYKGSCVEGGISYGNADLPCELGSGSGSGNDTLDGSTAGGGVIVMG 671

Query: 413  SFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGD 472
            S EHPLSSLS+EGSVKADG+S  + +    Y + NGS    GGGSGGTILLFL +L +G+
Sbjct: 672  SLEHPLSSLSIEGSVKADGESSRESTRNNYYSMNNGSNVNPGGGSGGTILLFLRSLALGE 731

Query: 473  SAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGG 532
            +AVLSS+GG+GS  GGGGGGGGRIHFHWSDIPTGDVYQPIASV+GSI   GGL   + G 
Sbjct: 732  AAVLSSIGGHGSLHGGGGGGGGRIHFHWSDIPTGDVYQPIASVKGSIHSRGGLARDQSGM 791

Query: 533  GENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI 592
            GENGT TGKACP+GLYGIFCEECP GTYKNVTGSD+SLC  CP  E P RA+YISVRGGI
Sbjct: 792  GENGTVTGKACPRGLYGIFCEECPAGTYKNVTGSDRSLCRHCPYHELPRRAIYISVRGGI 851

Query: 593  AETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVG 652
            AETPCPY+CIS+RYHMPHCYTALEELIYTFGGPWLFCLLL+G+LILLALVLSVARMKFVG
Sbjct: 852  AETPCPYKCISDRYHMPHCYTALEELIYTFGGPWLFCLLLLGVLILLALVLSVARMKFVG 911

Query: 653  VDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLP 712
            VDE PGPAPTQHGSQIDHSFPFLESLNEVLETNRAEES SHVHRMYFMGPNTFS+PWHLP
Sbjct: 912  VDESPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVHRMYFMGPNTFSEPWHLP 971

Query: 713  HTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKL 772
            HTPPEQIKEIVYEGAFN FVDEINAIA Y WWEG+++SIL+ILAYPLAWSWQQWRRR KL
Sbjct: 972  HTPPEQIKEIVYEGAFNGFVDEINAIAAYQWWEGSMHSILSILAYPLAWSWQQWRRRKKL 1031

Query: 773  QRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHH 832
            Q+LRE+VRS YDHACLRSCRSRALYEGLKVAAT DLMLA++DFFLGGDEKRTDLP  L  
Sbjct: 1032 QQLREFVRSGYDHACLRSCRSRALYEGLKVAATSDLMLAHVDFFLGGDEKRTDLPFRLQQ 1091

Query: 833  RFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRA 892
            RFPMSL FGGDGSYMAPFSL +DNILTSLMSQ +PPT  YRLVAGLNAQLRLVRRGRLR 
Sbjct: 1092 RFPMSLPFGGDGSYMAPFSLNSDNILTSLMSQAIPPTTWYRLVAGLNAQLRLVRRGRLRV 1151

Query: 893  TFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDR 952
            TFRPVLRWLETHA+P L++HG++VDLAWFQ+TACGYCQYGLLVYAV  E E T +   D 
Sbjct: 1152 TFRPVLRWLETHASPALRVHGVQVDLAWFQSTACGYCQYGLLVYAVEDETESTPVDGVDG 1211

Query: 953  GRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEER 1012
                E +SR     M           LL+ A+RS+ES MKRK+ +G I+DTN++ MLEE+
Sbjct: 1212 AIQNEHQSRDFGAAM-----------LLSGARRSTESLMKRKKPYGYILDTNSLHMLEEK 1260

Query: 1013 RDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFIL 1072
            +DIFY LSFI+HNTKPVG  DLVGLVIS+LLL D SLVLLTLLQLYSISL DVFLVLF+L
Sbjct: 1261 KDIFYPLSFIIHNTKPVGQHDLVGLVISMLLLADISLVLLTLLQLYSISLADVFLVLFVL 1320

Query: 1073 PLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNK 1132
            PLGILLPFPAGINALFSHGPRRS GLARVYALWN+TSLINV VAF+CGYVHY++  SP+K
Sbjct: 1321 PLGILLPFPAGINALFSHGPRRSAGLARVYALWNITSLINVMVAFICGYVHYNT-QSPSK 1379

Query: 1133 KVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS 1192
            K+PNFQPWN +MD+SEWWI P GLV+CK  QS+L+NWH+ANLEIQDR+LYSNDFELFWQS
Sbjct: 1380 KLPNFQPWNINMDDSEWWIIPTGLVVCKFIQSRLINWHIANLEIQDRSLYSNDFELFWQS 1439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475929\|ref\|XP_002278525.2\| PREDICTED: uncharacterized protein LOC100243932 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550884\|ref\|XP_002516490.1\| conserved hypothetical protein [Ricinus communis] gi\|223544310\|gb\|EEF45831.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224088972\|ref\|XP_002308587.1\| predicted protein [Populus trichocarpa] gi\|222854563\|gb\|EEE92110.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224141605\|ref\|XP_002324157.1\| predicted protein [Populus trichocarpa] gi\|222865591\|gb\|EEF02722.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449461397\|ref\|XP_004148428.1\| PREDICTED: uncharacterized protein LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356510059\|ref\|XP_003523758.1\| PREDICTED: uncharacterized protein LOC100783686 [Glycine max]	Back alignment and taxonomy information

>gi\|356515645\|ref\|XP_003526509.1\| PREDICTED: uncharacterized protein LOC100804207 [Glycine max]	Back alignment and taxonomy information

>gi\|334187625\|ref\|NP_001154709.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332004329\|gb\|AED91712.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449507269\|ref\|XP_004162983.1\| PREDICTED: uncharacterized LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1192
TAIR\|locus:2123762		1432	AT4G32920 "AT4G32920" [Arabido	0.808	0.673	0.604	0.0

TAIR\|locus:2123762 AT4G32920 "AT4G32920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3107 (1098.8 bits), Expect = 0., Sum P(3) = 0.
 Identities = 592/979 (60%), Positives = 707/979 (72%)

Query:    55 GNSFACPDNAGGAGTLYDAVPRTLTVSNYNMSTDTETLLLEFPNQPLWTNVYVQNCARAT 114
             G SF CP+NAG AGTLYD +  +LT+ N+N +T T+TLLLEFPN  L+TN+Y++N A+  
Sbjct:   311 GRSFGCPENAGAAGTLYDVISESLTIDNHNKTTYTDTLLLEFPNHRLFTNLYIRNMAKVA 370

Query:   115 VPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKI 174
             VPL WSRVQVQG ISLS GG L+FGL  YA+SEFEL AEELLMS+S IKVYGALRMTVK+
Sbjct:   371 VPLRWSRVQVQGLISLSNGGELNFGLPRYASSEFELFAEELLMSNSAIKVYGALRMTVKV 430

Query:   175 FLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRI 234
             FLM  S M +DGGG   + TS+LE SNL+VLKE S+I SN NL VHGQGLLNL+G GD I
Sbjct:   431 FLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSNGNLGVHGQGLLNLTGTGDTI 490

Query:   235 EAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSS 294
             EAQRL+L+LFYSI VG G+VLR PL+NA+T  +TP+LYC+ QDCPVELLHPPEDCNVNSS
Sbjct:   491 EAQRLILSLFYSIQVGAGAVLRGPLQNASTGGLTPKLYCQRQDCPVELLHPPEDCNVNSS 550

Query:   295 LSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASXXXXXXXXXXXXXXXXX 354
             L FTLQICRVEDI V+GL++GSV+ FH ART+ V+SSG ISA                  
Sbjct:   551 LPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSSGTISADGMGCKGGVGTGRFLRSG 610

Query:   355 XXXXXXXXXXXXXXCFNDSCVEGGISYGNANLPCELXXXXXXXXXXXXXXXXXIIVMGSF 414
                           C+N +C+EGG SYGNA+LPCEL                 IIV+GS 
Sbjct:   611 IGSGGGHGGKGGSGCYNHTCIEGGESYGNADLPCELGSGSGNEESTDSVAGGGIIVLGSL 670

Query:   415 EHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNXXXXXXXXXXXXTILLFLHTLDIGDSA 474
             EHPLSSLS+EGS+  DG+S      +K     +            T+LLFL TL+IG SA
Sbjct:   671 EHPLSSLSLEGSITTDGES-----PRKTLKGLSNSSLGPGGGSGGTVLLFLRTLEIGRSA 725

Query:   475 VLSSVXXXXXXXXXXXXXXXRIHFHWSDIPTGDVYQPIASVRGSIRIXXXXXXXXXXXXX 534
             +LSS+               RIHFHWSDIPTGDVY P+A V+G + +             
Sbjct:   726 ILSSIGGNGSLKGGGGGSGGRIHFHWSDIPTGDVYHPVAIVKGRVYVRGGMGIIEDNIGG 785

Query:   535 XXXXXXKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAE 594
                   KACP+GLYG+FCEECP GTYKNVTGSDK+LCH CP  + PHRAVY++VRGG+AE
Sbjct:   786 NGTLTGKACPEGLYGLFCEECPSGTYKNVTGSDKALCHLCPANDIPHRAVYVTVRGGVAE 845

Query:   595 TPCPYRCISERYHMPHCYTALEELIYTFGGPWXXXXXXXXXXXXXXXXXXXARMKFVGVD 654
             TPCPY+CIS+RYHMPHCYT LEELIYTFGGPW                   ARMKFV  D
Sbjct:   846 TPCPYKCISDRYHMPHCYTTLEELIYTFGGPWLFGVLLVVVLLLLALVFSVARMKFVSGD 905

Query:   655 ELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHT 714
             EL G APTQHGSQIDHSFPFLESLNEV+ET+R EES  H+HR+YF+GPNTFS+PWHL HT
Sbjct:   906 ELHGSAPTQHGSQIDHSFPFLESLNEVMETSRVEESQGHMHRIYFLGPNTFSEPWHLSHT 965

Query:   715 PPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQR 774
             PPE+IKEIVYE AFN FVDE+N IA Y WWEGAIY +L++L YPLAWSWQQ RRR+K Q+
Sbjct:   966 PPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLVYPLAWSWQQSRRRLKFQK 1025

Query:   775 LREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRF 834
             LR++VRSEYDH+CLRSCRSRALYEGLKVAATPDLMLA+LDFFLGGDEKR+DLPP +H R 
Sbjct:  1026 LRDFVRSEYDHSCLRSCRSRALYEGLKVAATPDLMLAHLDFFLGGDEKRSDLPPQVHQRL 1085

Query:   835 PMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATF 894
             PM LIFGGDGSYMA +SLQ+D+ILTSL+SQLVPPT  YR VAGLNAQLRLV++G+LR+TF
Sbjct:  1086 PMPLIFGGDGSYMAYYSLQSDDILTSLLSQLVPPTTWYRFVAGLNAQLRLVQQGKLRSTF 1145

Query:   895 RPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGR 954
             R V+RW+ETH NP L+ HG+RVDLA FQA +   CQYG+LV+ +   +E  S  S D   
Sbjct:  1146 RSVMRWIETHGNPALKRHGVRVDLARFQALSSSSCQYGILVHTIA--DEVASTRSDDE-- 1201

Query:   955 LIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRD 1014
                 +       +EN SG  RE     +  RS  ++++ +   G IID  ++Q L+E +D
Sbjct:  1202 --TEQQHPWGTQIENHSGDFRENF---QPLRSEINHVRHQEC-GEIIDIGSLQFLKEEKD 1255

Query:  1015 IFYFLSFIVHNTKPVGHQD 1033
             +   +SF++HNTKPVGHQD
Sbjct:  1256 VLSLISFLIHNTKPVGHQD 1274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032139001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1430 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1192
pfam07699		48	pfam07699, GCC2_GCC3, GCC2 and GCC3	6e-04

>gnl\|CDD\|219525 pfam07699, GCC2_GCC3, GCC2 and GCC3	Back alignment and domain information

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 552 CEECPVGTYKNVTGSDKSLCHQCPP 576
           CE CP GTY+   G D   C  CPP
Sbjct: 11  CEPCPRGTYQPEEGQDS--CIPCPP 33

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1192
KOG0196		996	consensus Tyrosine kinase, EPH (ephrin) receptor f	96.3
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	96.25
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	94.97
PF10256		118	Erf4: Golgin subfamily A member 7/ERF4 family; Int	92.78
cd00185		98	TNFR Tumor necrosis factor receptor (TNFR) domain;	92.73
PF07562		54	NCD3G: Nine Cysteines Domain of family 3 GPCR; Int	92.68
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	91.86
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	88.11
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	84.97
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	80.7

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]	Back alignment and domain information

Probab=96.30  E-value=0.0035  Score=77.73  Aligned_cols=54  Identities=39%  Similarity=0.883  Sum_probs=39.9

Q ss_pred             cCCCCCCC----cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCccCCCCCccccCCccc
Q 001005          541 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYH  607 (1192)
Q Consensus       541 k~CP~G~y----G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~~~~CpY~C~sdk~~  607 (1192)
                      =-|.+||.    |.-|+.||.||||...|  ...|.+||.+...+       ..  ..++|.  |..++|+
T Consensus       261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyR  318 (996)
T KOG0196|consen  261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYR  318 (996)
T ss_pred             eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCccc
Confidence            46899984    77799999999999764  57899999854221       11  246775  8888775

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4	Back alignment and domain information

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains	Back alignment and domain information

>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1192
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.3 bits (145), Expect = 4e-09
 Identities = 98/616 (15%), Positives = 182/616 (29%), Gaps = 186/616 (30%)

Query: 544  PKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 603
             + +   F EE     YK +    K+   Q  P       +YI  R  +      +    
Sbjct: 75   QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PS--MMTRMYIEQRDRLYNDNQVFA--- 127

Query: 604  ERYHMP--HCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAP 661
             +Y++     Y  L +                      AL L +   K V +D + G   
Sbjct: 128  -KYNVSRLQPYLKLRQ----------------------AL-LELRPAKNVLIDGVLG--- 160

Query: 662  TQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPW------HLPHTP 715
               G            +   L+      S+    +M F     F   W      + P T 
Sbjct: 161  --SGKT---------WV--ALDVCL---SYKVQCKMDF---KIF---WLNLKNCNSPETV 198

Query: 716  PEQIKEIVY--EGAFNSFVD-EINAIATYHWWEGAIYSILAILAYPLA-------WSWQQ 765
             E +++++Y  +  + S  D   N     H  +  +  +L    Y           + + 
Sbjct: 199  LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 766  WRRRMKLQRLREYVRSEYDHAC--LRSCRSRALYEGLKVAA-------------TPDLML 810
            W                ++ +C  L + R + + + L  A              TPD + 
Sbjct: 259  WN--------------AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 811  AYLDFFLGGDEKRTDLPP--CLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPP 868
            + L  +L    +  DLP      +   +S+I       +       DN       +L   
Sbjct: 305  SLLLKYLDCRPQ--DLPREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLT-- 356

Query: 869  TICYRLVAGLNAQLRLVRRGRLR--ATFRPVLRWLETHAN-PTLQLHGLRVDLAWFQATA 925
            TI   + + LN       R      + F P        A+ PT+ L  +     WF    
Sbjct: 357  TI---IESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSLI-----WFDVI- 400

Query: 926  CGYCQYGLLVYAVGGENEPTSI-GSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQ 984
                           +++   +     +  L+E+         +  +  +    L  + +
Sbjct: 401  ---------------KSDVMVVVNKLHKYSLVEK-------QPKESTISIPSIYLELKVK 438

Query: 985  RSSESYMKRKRSHGGIIDTNNVQMLEERRDIF------YFLSFIVHNTKPVGHQDLVGLV 1038
              +E  +     H  I+D  N+    +  D+       YF S I H+ K + H + + L 
Sbjct: 439  LENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 1039 ISVLLLGDFS-----LVLLTLLQLYSISLVDVFLVL-----FILP--------LGILLPF 1080
              V L  DF      +   +     S S+++    L     +I          +  +L F
Sbjct: 494  RMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 1081 PAGINALFSHGPRRSV 1096
               I           +
Sbjct: 552  LPKIEENLICSKYTDL 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1192
1jma_B		167	Herpesvirus entry mediator; V-type IG molecule and	93.73
3fl7_A		536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	93.54
2uwi_A		142	CRME protein; receptor, poxvirus TNF receptor, rec	92.39
1du3_A		130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	91.84
2hey_R		146	Tumor necrosis factor receptor superfamily member;	91.76
3me4_A		216	Tumor necrosis factor receptor superfamily member;	90.91
3alq_R		173	Tumor necrosis factor receptor superfamily member;	90.66
4fhq_A		134	Tumor necrosis factor receptor superfamily member;	89.46
3u3p_A		313	Tumor necrosis factor receptor superfamily member;	89.4
1sg1_X		161	Tumor necrosis factor receptor superfamily member	89.13
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	88.91
2e4u_A		555	Metabotropic glutamate receptor 3; G-protein-coupl	87.15
3tje_F		156	Tumor necrosis factor receptor superfamily member;	86.34
1sg1_X		161	Tumor necrosis factor receptor superfamily member	85.61
1ext_A		162	Tumor necrosis factor receptor; binding protein, c	84.25
3tje_F		156	Tumor necrosis factor receptor superfamily member;	83.94
3urf_Z		171	Tumor necrosis factor receptor superfamily member;	83.86
3alq_R		173	Tumor necrosis factor receptor superfamily member;	83.14
3qd6_R		177	CD40L receptor, tumor necrosis factor receptor sup	81.75
2hey_R		146	Tumor necrosis factor receptor superfamily member;	81.44
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	81.27
3me4_A		216	Tumor necrosis factor receptor superfamily member;	80.54

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*	Back alignment and structure

Probab=93.73  E-value=0.042  Score=55.60  Aligned_cols=63  Identities=27%  Similarity=0.535  Sum_probs=40.1

Q ss_pred             ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCC-ceEEeeeCC-ccCCCCCccccCCccc
Q 001005          540 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH  607 (1192)
Q Consensus       540 gk~CP~G~y---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~r-a~yiyvr~G-~~~~~CpY~C~sdk~~  607 (1192)
                      =+.||+|+|         ...|++||.|+|+...+. ...|.+|+.  .+.. ..++..... ...+.|  .|.+++|.
T Consensus        16 C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~   89 (167)
T 1jma_B           16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC   89 (167)
T ss_dssp             CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred             CCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence            366777764         467999999999986432 356888874  3322 233322222 235678  89998884

PyMOL of 1jma

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*	Back alignment and structure

>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}	Back alignment and structure

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*	Back alignment and structure

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1192
d1jmab1		56	g.24.1.1 (B:4-59) Cellular receptor HveA {Human (H	0.002
d2heyr3		54	g.24.1.1 (R:29-82) Tumor necrosis factor receptor	0.002

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure


class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 543 CPKGLY---GIFCEECPVGTY--KNVTGSDKSLCHQCPPQEF 579
           C +  Y      C +C  G    +       ++C  CPP  +
Sbjct: 1   CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTY 42

PyMOL of d1jmab1

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 54	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1192
d1sg1x3		42	Low affinity neurotrophin receptor p75NTR {Rat (Ra	95.75
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	93.06
d1exta1		59	Tumor necrosis factor (TNF) receptor {Human (Homo	92.15
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	91.26
d1kloa1		55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	89.83
d2heyr3		54	Tumor necrosis factor receptor superfamily member	89.4
d2heyr3		54	Tumor necrosis factor receptor superfamily member	87.02

>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.0015  Score=51.51  Aligned_cols=30  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             cCCCCCCC---------cccceeCCCCccccccCCCCCCc
Q 001005          541 KACPKGLY---------GIFCEECPVGTYKNVTGSDKSLC  571 (1192)
Q Consensus       541 k~CP~G~y---------G~fC~eCP~GtYK~~tGs~~~~C  571 (1192)
                      +.||+|++         ...|++||.|||.+++ |+...|
T Consensus         3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C   41 (42)
T d1sg1x3           3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC   41 (42)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred             ccCCCCcCeeecCcCCCCceeeECcCCcccCcC-CCcCcc
Confidence            57999984         7789999999999986 445556

PyMOL of d1sg1x3

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure