Citrus Sinensis ID: 001032

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180---

MIKMQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

ccccEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccc

ccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccHEEEEccccccccccccccccccEEcccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHEEcccHHccccccccHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHcHEEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcc

mikmqeysnggggddggggggpaDLAKLQSIMHSIEIACSSIQMHVNPAAAEATILglcqspqpykaCQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMqhasspegyVQAKISSVAAQLMKRgwldftssdkeAFFSQVHQAVLGIHGVDTQFIGINFLESLvsefspstssamglprefHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWdfqfdtsgrkiSINVFSAgvrtetssskrseciivqpgpawcDALISSGHIVWLLNLYSALRQKfssegywldcpiAVSARKLIVQLCSltgtvfpsdngkmqEHHLLQLLSGilewvdppdVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLksirpfgtltLLSNLMCEVVKVLMMNnteegtwswEARDILLDTWTTLLVSLDstgrnvvlpLEVRNAAASLFALIVESELKVAsasamddngefnYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLhqgrgmidpteTLEELYSLLLITGhvladegegeipvvpnaiQTHFVDTIEAAKHPVVLLCGSIIKFaewsldpearasvfsPRLMEAIVWFLARWSQTylmpleefrdsstnlchdtgyqhqssTSRKALLSFFgehnqgkpvlDIIVRISMTtlvsypgekdlqELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYgmrnsessnqYVRDLTRHATAYLVELSgkndlknvsqqpdIILLVSCLLERLrgaanateprtQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMtqsscllgeaktEKYKDLRALFQLLSNLCskdlvdfssdsiEAQAINISQVVFFGLHIvtplmsgdllkypklCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTldfglhhqdSEIVDMCLRALRALASYhyketgagkvGLAAQAaginnsngnpeeGVLSRFLRSLLQLLLfedyspdmvgtaadALFPLILCEPRLYQRLGSELierqanppfkSRLANALQSLtssnqlsstlDRVNYQRFRKNLTNFLVEVRGFLRTM

mikmqeysnggggddgggGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGvrtetssskrsecIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSgkndlknvsqQPDIILLVSCLLERLRgaanateprtqKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSltssnqlsstldrVNYQRFRKNLTNFLVEVRGFLRTM

MIKMQEYSNggggddggggggPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVanarfqaaaairdaamrEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPtetleelyslllitGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVlsrflrsllqlllfEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANAlqsltssnqlsstlDRVNYQRFRKNLTNFLVEVRGFLRTM

*****************************SIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF*********LPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVR*********ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAI********MLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGY********KALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGM*******QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGI********EGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELI****************************LDRVNYQRFRKNLTNFLVEVRGFL***

***************************LQSIMHSIEIACSS*******AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSV*************VKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVAS***M**NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH***G**DPTETLEELYSLLLITGHVLADEGEGEIPVVP************AAKHPVVLLCGSIIKFAE**************RLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT********SRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLK**SQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKM********LGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETG***************SNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE*********RLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

********NGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE*********GLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG**********SECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT*********RKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

MIKMQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAM****EFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRT*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1183	2.2.26 [Sep-21-2011]
Q499Y0		1150	Exportin-4 OS=Xenopus lae	N/A	no	0.869	0.894	0.262	6e-93
Q9ESJ0		1151	Exportin-4 OS=Mus musculu	yes	no	0.895	0.920	0.259	8e-91
Q9C0E2		1151	Exportin-4 OS=Homo sapien	yes	no	0.895	0.920	0.262	1e-90
Q802D3		1150	Exportin-4 OS=Danio rerio	yes	no	0.896	0.922	0.255	1e-89
Q5ZMR9		1154	Exportin-4 OS=Gallus gall	yes	no	0.868	0.889	0.260	1e-88
Q54UP5		1133	Exportin-4 OS=Dictyosteli	yes	no	0.881	0.920	0.222	1e-47
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	no	0.283	0.308	0.233	2e-08
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	no	0.283	0.308	0.233	2e-08
Q9UIA9		1087	Exportin-7 OS=Homo sapien	no	no	0.287	0.312	0.228	3e-08
Q5R9G4		1087	Exportin-7 OS=Pongo abeli	no	no	0.287	0.312	0.228	4e-08

>sp\|Q499Y0\|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1	Back alignment and function desciption

 Score =  343 bits (879), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 319/1213 (26%), Positives = 562/1213 (46%), Gaps = 184/1213 (15%)

Query: 51   AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110
            AE   L   +S  P+  C+ ILE S+V    FQAA AI +A +REW  L     +SL  F
Sbjct: 36   AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95

Query: 111  CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 170
             L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q
Sbjct: 96   LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152

Query: 171  FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 229
             +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +    +     +++ 
Sbjct: 153  TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211

Query: 230  IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 289
               +  A         L L +Q+L+W+F     GR   I +F +           S+ ++
Sbjct: 212  --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257

Query: 290  VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349
            ++P  +W + L++S  +     ++  +R+         D  +A  + + + QL SL G +
Sbjct: 258  LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308

Query: 350  FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409
            FP +  + Q  +L   + G+L  ++        IE   SE+  +        I+ + T  
Sbjct: 309  FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352

Query: 410  VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 463
            VF R + +  P   F + +  L++L C   +   +     ++     EA D LL++W TL
Sbjct: 353  VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412

Query: 464  LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 506
            +       +                 ++  P   RN  A+  A     E +  +    DD
Sbjct: 413  VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469

Query: 507  NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 554
               F+          ++L+S  ++ R A D  +PLLT L  ER  RLH            
Sbjct: 470  RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519

Query: 555  -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 601
              G   ID  + L++LY     L+L+TG++LAD+ +GE P++P+ I      Q+  VD  
Sbjct: 520  SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578

Query: 602  -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 639
             T++    P               V+ L  ++++ +E     E+RA+      + SP++ 
Sbjct: 579  TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASE----VESRATRADLTHLLSPQMG 634

Query: 640  EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVL 698
            + IVWFL RW++TYL+  E+  D   +L  +T                FG   +G   ++
Sbjct: 635  KDIVWFLKRWTKTYLLVDEKLYDQ-ISLPFNTA---------------FGADTEGCHWII 678

Query: 699  DIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN-DK 757
              ++   ++ L  +  E++L   T  QLL  LV R+     ++   +W  LA  FA    
Sbjct: 679  GYLLEKVISNLSVWSSEQELANETV-QLLVTLVERRERANLVIQCENWWNLAKQFAQRSP 737

Query: 758  TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQ 817
             L  L+S+ QR+L + LVL  +   +S++  QY  ++ +      + +  + + + + Q+
Sbjct: 738  PLNFLSSSVQRTLMKALVLGGFAHMDSDTKQQYWTEVLQPLQQRFLNVINQENFQQICQE 797

Query: 818  PDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKF 877
             ++   ++  LE L G A AT+      ++      +   + L+EVYK+    V L+++ 
Sbjct: 798  EEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNNPETVNLIIEV 857

Query: 878  VVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLR 937
             V+    QI YL   +   + + C  LLQ+YS +N+G+  +  +      A+ ++Y+DL 
Sbjct: 858  FVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRKRIDVT------AEEDQYQDLL 911

Query: 938  ALFQLLSNLCSKDLVDFS-SDSI-----EAQAIN----ISQVVFFGLHIVTPLMSGDLLK 987
             + +LL+NL SK+ +DFS +D +       QA N     + VV +G++IV PLMS DLLK
Sbjct: 912  LIMELLTNLLSKEFIDFSDTDEVFRPHEPGQATNRPVSAADVVLYGVNIVLPLMSQDLLK 971

Query: 988  YPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1047
            +P LC+ Y+ L++ + E++PE +  L  + F  ++ +L+ G+    SE+  +CL AL  L
Sbjct: 972  FPSLCNQYYKLITFICEIFPEKIPLLPEDLFKSLMYSLELGMTSMSSEVSQLCLEALTPL 1031

Query: 1048 ASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAAD 1107
            A                Q A   +++ +P    +  FL+ +  +L+ + ++ +M   A +
Sbjct: 1032 AE---------------QCAKAQDTD-SPLLAAMRHFLKLVFDMLVLQKHNTEMTTAAGE 1075

Query: 1108 ALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRK 1167
            A + L+      Y  L   L+  Q +P    RLA+A   LT+S+    TLDR     F K
Sbjct: 1076 AFYTLVCLNQAEYAELVETLLSSQQDPLIYQRLADAFNKLTASST-PPTLDRKQKMSFLK 1134

Query: 1168 NLTNFLVEVRGFL 1180
            +L  F+  V G L
Sbjct: 1135 SLEEFMGNVGGLL 1147

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Xenopus laevis (taxid: 8355)

>sp\|Q9ESJ0\|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2	Back alignment and function description

>sp\|Q9C0E2\|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	Back alignment and function description

>sp\|Q802D3\|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZMR9\|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1	Back alignment and function description

>sp\|Q54UP5\|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q9UIA9\|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	Back alignment and function description

>sp\|Q5R9G4\|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1183
302143624		1176	unnamed protein product [Vitis vinifera]	0.978	0.984	0.768	0.0
255561939		1165	protein with unknown function [Ricinus c	0.971	0.986	0.751	0.0
359488084		1123	PREDICTED: exportin-4-like [Vitis vinife	0.941	0.991	0.730	0.0
297828948		1123	hypothetical protein ARALYDRAFT_317312 [	0.948	0.999	0.712	0.0
334185076		1118	uncharacterized protein [Arabidopsis tha	0.929	0.983	0.679	0.0
356571192		1117	PREDICTED: exportin-4-like [Glycine max]	0.941	0.997	0.670	0.0
449449573		1121	PREDICTED: exportin-4-like [Cucumis sati	0.944	0.996	0.673	0.0
356504127		1117	PREDICTED: exportin-4-like [Glycine max]	0.935	0.991	0.678	0.0
242039377		1165	hypothetical protein SORBIDRAFT_01g01933	0.979	0.994	0.549	0.0
115482520		1166	Os10g0477000 [Oryza sativa Japonica Grou	0.980	0.994	0.549	0.0

>gi\|302143624\|emb\|CBI22377.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1773 bits (4591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1175 (76%), Positives = 1011/1175 (86%), Gaps = 17/1175 (1%)

Query: 16   GGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS 75
            G    GPADL +LQ+ M +IEIACSSIQMHVNPAAAEATIL LCQSPQPY+ACQFILENS
Sbjct: 12   GSSDRGPADLTQLQATMQAIEIACSSIQMHVNPAAAEATILSLCQSPQPYQACQFILENS 71

Query: 76   QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAA 135
            QVANARFQAAAAIRDAA+REW  LT+D+KKSLI FCLCFVMQHASSPEGYVQ+K+SSVAA
Sbjct: 72   QVANARFQAAAAIRDAAIREWGLLTSDDKKSLISFCLCFVMQHASSPEGYVQSKVSSVAA 131

Query: 136  QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLP 195
            QLMKRGWLDF +++KEAF  +V QAVLG+HGVD QF GINFLESLVSEFSPSTS+AMGLP
Sbjct: 132  QLMKRGWLDFAAAEKEAFMYEVKQAVLGVHGVDVQFTGINFLESLVSEFSPSTSTAMGLP 191

Query: 196  REFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255
            REFHEQC   LEL+YLKTFYCWA+DAA+SVT +IIES +A  EVK CTAALRL+ QILNW
Sbjct: 192  REFHEQCLKLLELEYLKTFYCWAQDAAVSVTSRIIESHSAVPEVKVCTAALRLMLQILNW 251

Query: 256  DFQFDTS---GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL 312
            DF+++T+   G K S++ F+ GVR + +S KRSECI+VQPGP+W D LIS+GHI WLL L
Sbjct: 252  DFRYNTNMAKGAKPSMDAFNDGVRHDIASPKRSECILVQPGPSWRDVLISNGHIGWLLGL 311

Query: 313  YSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEW 372
            Y ALRQKFS EGYWLDCP+AVSARKLIVQ CSLTGT+FPS N  MQEHHLLQLLSGI+ W
Sbjct: 312  YGALRQKFSCEGYWLDCPVAVSARKLIVQFCSLTGTIFPSAN--MQEHHLLQLLSGIIPW 369

Query: 373  VDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMC 432
            +DPP  V+QAIE GKSESEMLDGCRALLS+ATVTTP VFD+LLKS+ PFGTLTLLS LMC
Sbjct: 370  IDPPHAVSQAIECGKSESEMLDGCRALLSMATVTTPTVFDQLLKSVSPFGTLTLLSTLMC 429

Query: 433  EVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIV 492
            EV+KVLM  NTEE TWSW ARDILLDTWTTLL+  +    N   P E  NAAA+LFALIV
Sbjct: 430  EVIKVLMATNTEEETWSWMARDILLDTWTTLLIVCE----NARFPSEGINAAANLFALIV 485

Query: 493  ESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552
            E+EL+ ASASA +D+ +  YLQASISAMDERLSSYALIARAAID  +PLLTRLF+ERFAR
Sbjct: 486  EAELRAASASAFNDDEDSQYLQASISAMDERLSSYALIARAAIDVAIPLLTRLFTERFAR 545

Query: 553  LHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVL 612
            LHQG+G+ DPTETLEELYSLLLITGHVLADEGEGE P VP AIQTHFVD +E  KHPVV+
Sbjct: 546  LHQGKGITDPTETLEELYSLLLITGHVLADEGEGETPSVPMAIQTHFVDIVETHKHPVVV 605

Query: 613  LCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTG 672
            L  +II+FAE SLD E R SVFSPRLMEA++WFLARWS TYLM  EE R+ + N    +G
Sbjct: 606  LSSTIIRFAEQSLDQEMRTSVFSPRLMEAVIWFLARWSSTYLMVPEECREDNCN----SG 661

Query: 673  YQHQS----STSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728
            Y H+S      SRKALLSFFG++NQGKPVLD+IVRISM TL+SYPGEKDLQ LTC QLLH
Sbjct: 662  YDHESWLRSQHSRKALLSFFGQYNQGKPVLDVIVRISMMTLISYPGEKDLQALTCYQLLH 721

Query: 729  ALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
            +LVRRKNVC HLVA  SWRELA+AFAN +TL  L+ST+QRSLAQTLVLSA GMRN E+SN
Sbjct: 722  SLVRRKNVCTHLVAFDSWRELANAFANGRTLFSLHSTHQRSLAQTLVLSASGMRNPEASN 781

Query: 789  QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
            QYVRDLT H TAYLVE+S KNDLKN SQQPDIIL VSCLLERLRGAA A EPRTQKAIYE
Sbjct: 782  QYVRDLTSHMTAYLVEMSNKNDLKNFSQQPDIILSVSCLLERLRGAARALEPRTQKAIYE 841

Query: 849  MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
            MGFSVMN VL+LLEVYKHE AVVYLLLKFVVDWVDG+I YLE QET IV+DFC RLLQLY
Sbjct: 842  MGFSVMNSVLVLLEVYKHEFAVVYLLLKFVVDWVDGEIIYLEAQETAIVVDFCMRLLQLY 901

Query: 909  SSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQ 968
            SSHNIGK+ ++ SS LL EAKTE YKDLRAL QL++NLCSKD+VDFSSDSIE    +ISQ
Sbjct: 902  SSHNIGKISVSLSSSLLSEAKTEMYKDLRALLQLIANLCSKDMVDFSSDSIETPGTSISQ 961

Query: 969  VVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFG 1028
            VV+FGLHIVTPL+S DLLKYPKLCHDYFSLLSH+LEVYPE VAQL++EAFAHVLGTLDFG
Sbjct: 962  VVYFGLHIVTPLISLDLLKYPKLCHDYFSLLSHMLEVYPEMVAQLNSEAFAHVLGTLDFG 1021

Query: 1029 LHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSL 1088
            LHHQD+E+VDMCL+ L+ALASYHYKET  GK+GL + A+G  +S+G  +EG+LSRFLRSL
Sbjct: 1022 LHHQDTEVVDMCLKVLKALASYHYKETSIGKIGLGSHASGFKDSDGKFQEGILSRFLRSL 1081

Query: 1089 LQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLT 1148
            LQLLLFEDYS D+VG AADALFPLILCE  +YQRLG EL + QANP  KSRL NALQSLT
Sbjct: 1082 LQLLLFEDYSTDLVGIAADALFPLILCEQGVYQRLGQELADSQANPTLKSRLVNALQSLT 1141

Query: 1149 SSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM 1183
            SSNQLS TLDR+NY+RFRKNL +FL+EV GFLRTM
Sbjct: 1142 SSNQLSPTLDRINYKRFRKNLHSFLIEVHGFLRTM 1176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255561939\|ref\|XP_002521978.1\| protein with unknown function [Ricinus communis] gi\|223538782\|gb\|EEF40382.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|359488084\|ref\|XP_002266608.2\| PREDICTED: exportin-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297828948\|ref\|XP_002882356.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi\|297328196\|gb\|EFH58615.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334185076\|ref\|NP_187099.6\| uncharacterized protein [Arabidopsis thaliana] gi\|332640567\|gb\|AEE74088.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356571192\|ref\|XP_003553763.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449449573\|ref\|XP_004142539.1\| PREDICTED: exportin-4-like [Cucumis sativus] gi\|449479730\|ref\|XP_004155691.1\| PREDICTED: exportin-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356504127\|ref\|XP_003520850.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|242039377\|ref\|XP_002467083.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] gi\|241920937\|gb\|EER94081.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|115482520\|ref\|NP_001064853.1\| Os10g0477000 [Oryza sativa Japonica Group] gi\|78708814\|gb\|ABB47789.1\| expressed protein [Oryza sativa Japonica Group] gi\|113639462\|dbj\|BAF26767.1\| Os10g0477000 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1183
RGD\|1312015		1152	Xpo4 "exportin 4" [Rattus norv	0.531	0.546	0.257	2.2e-70
UNIPROTKB\|F1P157		1146	XPO4 "Exportin-4" [Gallus gall	0.530	0.547	0.255	1.1e-67
UNIPROTKB\|Q5ZMR9		1154	XPO4 "Exportin-4" [Gallus gall	0.530	0.544	0.255	1.2e-67
UNIPROTKB\|Q9C0E2		1151	XPO4 "Exportin-4" [Homo sapien	0.377	0.388	0.287	1.3e-67
UNIPROTKB\|E2QUP6		1151	XPO4 "Uncharacterized protein"	0.377	0.388	0.285	2.1e-67
UNIPROTKB\|F1MVW4		1153	XPO4 "Uncharacterized protein"	0.385	0.395	0.279	6.8e-65
MGI\|MGI:1888526		1151	Xpo4 "exportin 4" [Mus musculu	0.551	0.566	0.253	3e-61
ZFIN\|ZDB-GENE-030131-3062		1152	xpo4 "exportin 4" [Danio rerio	0.551	0.566	0.257	5.6e-59
UNIPROTKB\|F1RVA6		1002	XPO4 "Uncharacterized protein"	0.377	0.446	0.287	2.4e-58
DICTYBASE\|DDB_G0280907		1133	xpo4 "exportin 4" [Dictyosteli	0.384	0.401	0.209	2.3e-30

RGD\|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 511 (184.9 bits), Expect = 2.2e-70, Sum P(3) = 2.2e-70
 Identities = 181/704 (25%), Positives = 318/704 (45%)

Query:   522 ERLSSYALIARAAIDATVPLLTRLFSERFARLH------QGRGMIDPXXXXXXXXXXXXX 575
             ++L+S  ++ R A +  +PLLT L  ER  RLH      Q + +  P             
Sbjct:   476 DQLASVGMLGRIAAEHCMPLLTSLLEERVTRLHGQLQRHQQQLLASPGSSTIDNKMLDDL 535

Query:   576 ----------XGHVLADEGEGEIPVVPNAIQTHFVD-TIEAAKHPVVLLCGSIIKFAEWS 624
                        G++LAD+ +GE P++P  I  + +  + E   +  + + GS  + A  S
Sbjct:   536 YEDIHWLILVTGYLLADDTQGETPLIPPEIMEYSIKHSSEVDINTTLQILGSPGEKAS-S 594

Query:   625 LDPEARA-SVFSPRLMEAIVWF------LARWSQTYLMPLEEFRD--------SSTNLCH 669
             +   +R  SV   RL+ A++          R   T+L+  +  +D        + T L  
Sbjct:   595 IPGYSRTDSVI--RLLSAVLRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLLV 652

Query:   670 DTGYQHQSSTSRKALLSFFGEHNQGKP-VLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728
             D     Q S     L + FG   +G   ++  +++  ++ L  +  E+DL   T  QLL 
Sbjct:   653 DEKLYDQISLP---LSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTV-QLLV 708

Query:   729 ALVRRKNVCVHLVA-LGSWRELASAFAN-DKTLILLNSTNQRSLAQTLVLSAYGMRNSES 786
              LV R+    +LV    +W  LA  FA+    L  L+S  QR+L + LVL  +   ++E+
Sbjct:   709 TLVERRERRANLVIQCENWWNLAKQFASRSPPLNYLSSPVQRTLMKALVLGGFAHMDTET 768

Query:   787 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAI 846
               QY  ++ +      + +  + + + + QQ ++   ++  LE L G A AT+      +
Sbjct:   769 KQQYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAIL 828

Query:   847 YEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQ 906
             +      +N  + L+EVYK+    V L+++  V+    QI YL       + + C  LLQ
Sbjct:   829 FNFLMDFLNNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGESRAMHLYEACLTLLQ 888

Query:   907 LYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFS-SDSI------ 959
             +YS +N+G+  +  +      A+ E+Y+DL  + +LL+NL SK+ +DFS +D +      
Sbjct:   889 VYSKNNLGRQRIDVT------AEEEQYQDLLLIMELLTNLLSKEFIDFSDTDEVFRGHEP 942

Query:   960 ---EAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTE 1016
                  ++++ + VV +G++++ PLMS DLLK+P LC+ Y+ L++ + E++PE + QL  +
Sbjct:   943 GQAAGRSVSAADVVLYGVNLILPLMSQDLLKFPTLCNQYYKLITFICEIFPEKIPQLPED 1002

Query:  1017 AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNP 1076
              F  ++ +L+ G+    SE+  +CL AL  LA                Q A    +  +P
Sbjct:  1003 LFKSLMYSLELGMTSMSSEVCQLCLEALTPLAE---------------QCAKAQETE-SP 1046

Query:  1077 EEGVXXXXXXXXXXXXXXEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPF 1136
                               + ++ +M   A +A + L+      Y  L   L+  Q +P  
Sbjct:  1047 LFLATRHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLVCLHQAEYSELVETLLSSQQDPII 1106

Query:  1137 KSRLANAXXXXXXXXXXXXXXDRVNYQRFRKNLTNFLVEVRGFL 1180
               RLA+A              DR     F K+L  F+  V G L
Sbjct:  1107 YQRLADAFNKLTASSTPPTL-DRKQKMAFLKSLEEFMANVGGLL 1149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISO

UNIPROTKB\|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0280907 xpo4 "exportin 4" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1183
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.85
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.79
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.68
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.55
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.53
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.22
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.09
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.98
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.84
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.55
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.11
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.8
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.35
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.92
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.89
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	96.39

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.7e-149  Score=1240.81  Aligned_cols=1028  Identities=19%  Similarity=0.282  Sum_probs=895.5

Q ss_pred             HHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH
Q 001032           33 HSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG  109 (1183)
Q Consensus        33 ~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~  109 (1183)
                      ++||.+|+.+|.+.|   |.+||+.|.+|..+|+++++|+.+|++++.||.++.|++.|.+.+.++- .+|.++|.+||+
T Consensus         5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~   83 (1082)
T KOG1410|consen    5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN   83 (1082)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence            789999999999876   7999999999999999999999999999999999999999999999984 799999999999


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCC--hhHHHHHHHHHhcccCChhhHHHHHHHHHHHHHhcCCC
Q 001032          110 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD--KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS  187 (1183)
Q Consensus       110 ~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~  187 (1183)
                      |+++|+..++|.+++||...+++++|+|+|.||+|....+  -.+.+.++.++++. ++.+||++|+.||+.+++||+..
T Consensus        84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~  162 (1082)
T KOG1410|consen   84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA  162 (1082)
T ss_pred             HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999964322  13567777788874 46899999999999999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccc
Q 001032          188 TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKIS  267 (1183)
Q Consensus       188 ~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~  267 (1183)
                         +.+.+..+|||...+|||+.|.+||.+++.+|+........   +.....++.++|++..+||+|||+|+..||+  
T Consensus       163 ---~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nln---d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs--  234 (1082)
T KOG1410|consen  163 ---DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLN---DRAQLGLLMQVLKLNLNCLNFDFIGSSTDES--  234 (1082)
T ss_pred             ---CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcc---cHhHhhHHHHHHHHHhhhccccccccccccc--
Confidence               66899999999999999999999999999999887621111   1124578999999999999999999999998  


Q ss_pred             cccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhccc
Q 001032          268 INVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG  347 (1183)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~  347 (1183)
                                      +||..++++|.+||..|.|++++++||++|..++           |+++..++.||+|+||+|+
T Consensus       235 ----------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvRR  287 (1082)
T KOG1410|consen  235 ----------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVRR  287 (1082)
T ss_pred             ----------------cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHHH
Confidence                            8999999999999999999999999999998755           5689999999999999999


Q ss_pred             CcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCC-ChhhHHHHHHHHHHHHhhcChhhHHhhhhccCcchhHHH
Q 001032          348 TVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGK-SESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTL  426 (1183)
Q Consensus       348 ~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~-~~~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~l~~  426 (1183)
                      ++|++.+   |.+|+.+++.|+..|+++|        +|+ ++.+||+|||+|.||++|+             |.+++..
T Consensus       288 sLFN~ae---Ra~yl~~Lv~Gvk~il~np--------~~LsD~~nyHeFCRllaRlktNY-------------QL~ELv~  343 (1082)
T KOG1410|consen  288 SLFNGAE---RAKYLQHLVEGVKRILENP--------QGLSDPANYHEFCRLLARLKTNY-------------QLGELVK  343 (1082)
T ss_pred             HHhCCHH---HHHHHHHHHHHHHHHHhCC--------cCCCCcchHHHHHHHHHHHHhhh-------------hhHhhhc
Confidence            9997666   8999999999999999874        456 6699999999999997775             4555554


Q ss_pred             HHHHH---HHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc
Q 001032          427 LSNLM---CEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA  503 (1183)
Q Consensus       427 l~~l~---~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~yi~srl~~~~~~~  503 (1183)
                      ++. +   +..+..|++.+...|+|+.+|.+++|..|.+|+.++||++  ...|+.+..++++|..+||.||+...+...
T Consensus       344 v~~-Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk--~~~phlLd~y~PeIt~afi~SRl~sV~~iv  420 (1082)
T KOG1410|consen  344 VEC-YPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVK--NTEPHLLDTYCPEITKAFITSRLQSVEIIV  420 (1082)
T ss_pred             cCC-cHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCccc--CCChHHHhhhcHHHHHHHHHHHhhhhheec
Confidence            443 3   3344566777778899999999999999999999999965  557888889999999999999999877654


Q ss_pred             cCCCCccchhhccHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHHHHHHHhcc--CCCCCc-c-hHHH-HHHHHHHHHHh
Q 001032          504 MDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP-T-ETLE-ELYSLLLITGH  578 (1183)
Q Consensus       504 ~~e~d~~e~~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~-~-~~~E-~L~Wli~i~g~  578 (1183)
                        .|+ -|++.||.....+|||.++++||+.|+.|+.+|.++|++..+.|.+.  .++.+. + .+.| +|.|+|+|+|.
T Consensus       421 --rd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgt  497 (1082)
T KOG1410|consen  421 --RDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGT  497 (1082)
T ss_pred             --ccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHH
Confidence              232 45677778888999999999999999999999999999999888654  232222 2 4555 99999999999


Q ss_pred             HhccCCCCCccCChhhhhhhhhhhhcccCch--HHHHHHHHHHH---HhhhcCcccccccCCHHHHHHHHHHHHHHHhhh
Q 001032          579 VLADEGEGEIPVVPNAIQTHFVDTIEAAKHP--VVLLCGSIIKF---AEWSLDPEARASVFSPRLMEAIVWFLARWSQTY  653 (1183)
Q Consensus       579 ~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~--vv~Li~~ll~l---~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~Y  653 (1183)
                      +++++..+-                +.+++.  --+|+..++++   .+.++.     .....+++.+++||+.+|+++|
T Consensus       498 vV~gk~t~~----------------Std~~d~mDgEL~arvlql~nlmdsr~~-----~~~n~rle~ail~f~eqFRk~Y  556 (1082)
T KOG1410|consen  498 VVGGKTTAT----------------STDEHDAMDGELSARVLQLVNLMDSRLP-----LKGNERLELAILHFLEQFRKAY  556 (1082)
T ss_pred             Hhcceeccc----------------ccchhhhhhhHHHHHHHHHHHhhhcccc-----hhhhHHHHHHHHHHHHHHHHHH
Confidence            999875321                112222  12455444444   333331     2256789999999999999999


Q ss_pred             cCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhc
Q 001032          654 LMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRR  733 (1183)
Q Consensus       654 L~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~~  733 (1183)
                      ++   |..             ..+++|+.++.+.+|. ++...+++.|+.||.+||+.|+..++|++.++ +||..|+.+
T Consensus       557 vg---DQ~-------------~rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~G  618 (1082)
T KOG1410|consen  557 VG---DQI-------------QRSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLG  618 (1082)
T ss_pred             HH---HHH-------------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhh
Confidence            98   544             3456799999999997 67789999999999999999999999999999 899999999


Q ss_pred             cccchhhhcchhHHHHHHHhhchhhhhcccc------hhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhC
Q 001032          734 KNVCVHLVALGSWRELASAFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG  807 (1183)
Q Consensus       734 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~  807 (1183)
                      ++..+.|+++|.++.+++||.+++++|.-+.      ..|++||.++++++.  .|-.+.+..|++||.|++..|..+++
T Consensus       619 Y~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~  696 (1082)
T KOG1410|consen  619 YSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQ  696 (1082)
T ss_pred             HHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998775443      356789999999875  34556678899999999999998887


Q ss_pred             CCcccccccchhHHHHHHHHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc
Q 001032          808 KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ  885 (1183)
Q Consensus       808 ~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~  885 (1183)
                      ..+. +...+++++..++|++|||||||.|.+++ ++.++|+|+||. +|++...++.|.++|++++|||||++|+|+|+
T Consensus       697 ~~~n-n~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~Nr  775 (1082)
T KOG1410|consen  697 VFQN-NCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNR  775 (1082)
T ss_pred             Hhcc-ccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhh
Confidence            6543 24677889999999999999999999977 889999999999 99999999999999999999999999999999


Q ss_pred             cccccc----chhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCC-cccc
Q 001032          886 ISYLEV----QETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSS-DSIE  960 (1183)
Q Consensus       886 ~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~-~~~~  960 (1183)
                      .+|+.|    |+++.|||++++++..|++     .++..++..+...|++|||+|.+++.+|+++++|+|+|||+ ++||
T Consensus       776 sQRL~Fd~SSpngiLLFrEtSKmv~~YG~-----riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYG  850 (1082)
T KOG1410|consen  776 SQRLKFDVSSPNGILLFRETSKMVSIYGN-----RILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYG  850 (1082)
T ss_pred             HhheecccCCCceeEEehhhhHHHHHHhh-----HhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeC
Confidence            999988    5789999999999999975     45666666677899999999999999999999999999999 9999


Q ss_pred             ccccchhHHHHhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHH
Q 001032          961 AQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMC 1040 (1183)
Q Consensus       961 d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~ 1040 (1183)
                      |++++.+.-.|.+|.+.||.  .|+++|||+.++||.|++.+++.|+.++.+|+++.|..++.||..|+++.|+-|+..|
T Consensus       851 D~~l~daL~~fvKm~lsIp~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssc  928 (1082)
T KOG1410|consen  851 DSALDDALQTFVKMLLSIPH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSC  928 (1082)
T ss_pred             chHHHHHHHHHHHHHhcCCH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHH
Confidence            99999999999999999999  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcC
Q 001032         1041 LRALRALASYHYKETGAGKVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCE 1116 (1183)
Q Consensus      1041 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~ 1116 (1183)
                      |.++|.+++|++++..++.+......+++++..    .+.+|++++++++.+++.++||+|.+||  ++|||+++||+.+
T Consensus       929 csslD~i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~ 1006 (1082)
T KOG1410|consen  929 CSSLDTIVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILIN 1006 (1082)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhh
Confidence            999999999999998765443222112222211    2667999999999999999999999988  9999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q 001032         1117 PRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1181 (1183)
Q Consensus      1117 ~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~L~ 1181 (1183)
                      +++|..+..+++++|| +++++++..+|.+||.+  ++.|++.||||+|++|+..|+++++.-|+
T Consensus      1007 E~~fSdlk~~l~ssQp-~dkqq~l~~cF~~LM~~--ve~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1007 EKYFSDLKASLTSSQP-YDKQQDLDMCFTNLMEG--VERNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred             HHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHH--HhhcccccchhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998 89999999999999997  66899999999999999999999987665

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1183
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-09
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-04
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	3e-08
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	9e-05
2x19_B		963	Importin-13; nuclear transport, protein transport;	2e-07
2x19_B		963	Importin-13; nuclear transport, protein transport;	7e-05
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-07
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	8e-07
2x1g_F		971	Cadmus; transport protein, developmental protein,	2e-06
2x1g_F		971	Cadmus; transport protein, developmental protein,	3e-04
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 83.4 bits (205), Expect = 3e-16
 Identities = 116/704 (16%), Positives = 196/704 (27%), Gaps = 217/704 (30%)

Query: 281 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALRQKFSSEG----Y-WLDCPIAVS 334
           S +  + II+       DA+  +  + W L      + QKF  E     Y +L  PI   
Sbjct: 47  SKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 335 AR-------KLIVQLCSL--TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIE- 384
            R         I Q   L     VF   N    + +L +L   +LE     +V+   +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLG 160

Query: 385 SGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT--LTLLSNLMCEVVKVLMMNN 442
           SGK+    LD C                  ++    F    L L  N       + M+  
Sbjct: 161 SGKT-WVALDVCL--------------SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204

Query: 443 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLF-------ALIVES 494
                        LL        S      N+ L +  ++     L         L+V  
Sbjct: 205 -------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249

Query: 495 ELKVASASAMDD--NGEFNYLQASISAMDERLSSYALIA---RAAIDATVPLLTRLFSER 549
                    + +  N +      + +A +  LS   L+    +   D      T   S  
Sbjct: 250 ---------LLNVQNAK------AWNAFN--LSCKILLTTRFKQVTDFLSAATTTHIS-- 290

Query: 550 FARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAK-H 608
              L      + P E    L    L       D    ++P              E    +
Sbjct: 291 ---LDHHSMTLTPDEVKS-LLLKYL-------DCRPQDLPR-------------EVLTTN 326

Query: 609 PVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 668
           P  L   SII  AE   D  A              W    W       L    +SS    
Sbjct: 327 PRRL---SII--AESIRDGLAT-------------W--DNWKHVNCDKLTTIIESS---- 362

Query: 669 HDTGYQHQSSTSRKAL---LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQ 725
                        + +   LS F               I    L     +    +     
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPS----------AHIPTILLSLIWFDVIKSD--VMV 406

Query: 726 LLHALVRRKNVCVHLVALGSWRELASAFANDKTL-ILLNSTNQRSLAQTLVLSAYGMRNS 784
           +++ L +       LV      + ++       L + +   N+ +L +++V   Y +  +
Sbjct: 407 VVNKLHKYS-----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT 458

Query: 785 ESSNQYVRD---------LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAA 835
             S+  +           +  H     +E   +  L        + L    L +++R  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTL-----FRMVFLDFRFLEQKIRHDS 511

Query: 836 NATEPRTQKAIYEMGFSVMNPVLLLLEVYK--------HESAVVYLLLKFVVDWVDGQIS 887
            A              S++N  L  L+ YK            +V  +L F          
Sbjct: 512 TAWNASG---------SILN-TLQQLKFYKPYICDNDPKYERLVNAILDF---------- 551

Query: 888 YLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTE 931
            L   E N++    T LL++         LM +   +  EA  +
Sbjct: 552 -LPKIEENLICSKYTDLLRI--------ALMAEDEAIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Length = 321	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1183
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.96
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.88
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.81
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.64
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.55
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.27
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.97
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	90.18
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	89.29

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

Probab=100.00  E-value=3.1e-64  Score=646.63  Aligned_cols=928  Identities=13%  Similarity=0.175  Sum_probs=667.8

Q ss_pred             HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH
Q 001032           33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF  110 (1183)
Q Consensus        33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~  110 (1183)
                      +.||+++..+|.|.+  |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+.+|+++|.+||++
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~  107 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY  107 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence            445666667788753  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCC-----CchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhcccCChhhHHHHHHHHHHHHHhcC
Q 001032          111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (1183)
Q Consensus       111 ll~~l~~~~~~-----~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s  185 (1183)
                      +++++.+...+     .++.+++|++++++.|+|++||+    .|++++.++.+.+.+  ++.++..+|.+|..+.+|..
T Consensus       108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~  181 (1073)
T 3gjx_A          108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVF  181 (1073)
T ss_dssp             HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence            99999875322     24677899999999999999998    599999999999864  67889999999999999965


Q ss_pred             CCCCCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCc
Q 001032          186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK  265 (1183)
Q Consensus       186 ~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~  265 (1183)
                      ..+++  .++..+..+.+..++.. ++.|++++..+|++.           ....++..+|+++..+++|...+.     
T Consensus       182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~-----  242 (1073)
T 3gjx_A          182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY-----  242 (1073)
T ss_dssp             TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred             hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence            43211  23456667778888885 999999888877542           145688899999999999997654     


Q ss_pred             cccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhc
Q 001032          266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL  345 (1183)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl  345 (1183)
                                                        +.+++++++++..+  +.          +++++..|.+||.++.+.
T Consensus       243 ----------------------------------i~~~~ll~~L~~~~--L~----------~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          243 ----------------------------------IFETKLISTLIYKF--LN----------VPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             ----------------------------------HHSSSHHHHHHHHT--SS----------SHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------hccchHHHHHHHHh--cC----------ChHHHHHHHHHHHHHHhc
Confidence                                              56677888774222  11          367999999999999987


Q ss_pred             ccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCCh--hhHHHHHHHHHHHHhhcChhhHHhhhhccCcchh
Q 001032          346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT  423 (1183)
Q Consensus       346 ~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~~--~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~  423 (1183)
                      +.+   + ....-...+..++..+..+++....+.+++..|.++  +-+..+||++..+...|.     .++.....  +
T Consensus       277 ~~~---~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~  345 (1073)
T 3gjx_A          277 SVS---Q-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--L  345 (1073)
T ss_dssp             CSG---G-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--G
T ss_pred             ccc---c-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--c
Confidence            422   1 111224456666776777888777788887777532  345568888877776653     22211101  0


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCCC---------CChhhhhhHHHHHH-
Q 001032          424 LTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNVV---------LPLEVRNAAASLFA-  489 (1183)
Q Consensus       424 l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~----~~~~~~~---------~~~~~~~~~~~I~~-  489 (1183)
                      ...+.. ..+.+-.  . +..++   .|.+++++++|..|...+-    +..+..+         .+.. ...-..+|. 
T Consensus       346 ~~~l~~-~l~~ll~--~-s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~  417 (1073)
T 3gjx_A          346 REALME-ALHYMLL--V-SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSK  417 (1073)
T ss_dssp             HHHHHH-HHHHHHH--H-TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHH
T ss_pred             hHHHHH-HHHHHHH--H-hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHH
Confidence            111110 0111111  1 22233   7999999999999987652    1000010         1111 111234443 


Q ss_pred             --HHHhcccccccccccCCCCccchh----h--ccHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHHHHHHHhccCCCCC
Q 001032          490 --LIVESELKVASASAMDDNGEFNYL----Q--ASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID  561 (1183)
Q Consensus       490 --~yi~srl~~~~~~~~~e~d~~e~~----~--~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~  561 (1183)
                        ..+.+||++|+++...|+|++|..    .  ++...|+.+.+++.+++++++.++...+.+.+.+..      ++ .+
T Consensus       418 L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~-~~  490 (1073)
T 3gjx_A          418 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NG-TE  490 (1073)
T ss_dssp             HHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TS-CC
T ss_pred             HHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cC-CC
Confidence              346799999987765444444421    2  244789999999999999999999999998888654      22 23


Q ss_pred             cc-hHHHHHHHHHH-HHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHH
Q 001032          562 PT-ETLEELYSLLL-ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM  639 (1183)
Q Consensus       562 ~~-~~~E~L~Wli~-i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~  639 (1183)
                      |+ ..+|.++|.++ |+|++..+                      .++..++.++..|+++++...+++++     +.++
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~----------------------~E~~~Lp~vi~~Ll~L~e~~~~kd~k-----~~va  543 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEE----------------------DEKRFLVTVIKDLLGLCEQKRGKDNK-----AIIA  543 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHH----------------------HHHHHHHHHHHHHHHHHHHSCSHHHH-----HHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcc----------------------cccchHHHHHHHHhcccccccccchh-----HHHH
Confidence            43 57899999997 44554311                      12233678999999999876665554     4588


Q ss_pred             HHHHHHHHHHHhhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCC---
Q 001032          640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPG---  714 (1183)
Q Consensus       640 ~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g--~~~l~~ll~~~~~~L~~~~~---  714 (1183)
                      .+++|.+|||++ |+    ..+            ++++.++..++++++++.++|  +++++.|.+.+..|..++..   
T Consensus       544 s~i~~vlgrY~~-wl----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~  606 (1073)
T 3gjx_A          544 SNIMYIVGQYPR-FL----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV  606 (1073)
T ss_dssp             HHHHHHHHHCHH-HH----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred             HHHHHHHhhhHH-HH----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999986 88    444            678889999999999988888  78999999999999876522   


Q ss_pred             --chhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHH
Q 001032          715 --EKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVR  792 (1183)
Q Consensus       715 --e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  792 (1183)
                        ..+.+                           ..+++.+..  ...+++++....||++++.+++..+++..+.++++
T Consensus       607 ~e~~p~i---------------------------~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~  657 (1073)
T 3gjx_A          607 GEVMPFI---------------------------DEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE  657 (1073)
T ss_dssp             TCSSCHH---------------------------HHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             cccchHH---------------------------HHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence              22333                           333332211  23347888888999999999988776666788999


Q ss_pred             HHHHHHHHHHHHhhCCCcc-cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHH
Q 001032          793 DLTRHATAYLVELSGKNDL-KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAV  870 (1183)
Q Consensus       793 ~~m~pl~~~~~~l~~~~~~-~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v  870 (1183)
                      .+|.|+.++|++++++... .+...|++.++.+..++|++..+|.+.+..        +.++ .+++++++++|..+++.
T Consensus       658 ~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~  729 (1073)
T 3gjx_A          658 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSEN  729 (1073)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999965332 345677888889999999999999998875        3333 56778899999888776


Q ss_pred             HHHHHHHHHHHhhcccccccc----chhhhHHHHHHHHHHHhhhcccC--------------ccccccccccccchhhhh
Q 001032          871 VYLLLKFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIG--------------KMLMTQSSCLLGEAKTEK  932 (1183)
Q Consensus       871 ~~~iL~~~~e~v~~~~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~--------------~~~~~~~~~~~~~~~~e~  932 (1183)
                      +.       +.+...+.....    ...+.+.+++++++++|......              .+..+|..+.+...+.+.
T Consensus       730 i~-------~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~ev  802 (1073)
T 3gjx_A          730 IS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEV  802 (1073)
T ss_dssp             HH-------HHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHH
T ss_pred             HH-------HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHH
Confidence            54       445443433322    22577899999999999765421              113566666677778888


Q ss_pred             hhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhc
Q 001032          933 YKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQ 1012 (1183)
Q Consensus       933 ~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~ 1012 (1183)
                      +..+..+++-+.+.+.++.            ..+.+   .-+++++.||++|+.+||+++..||+|++.+++.||..+.+
T Consensus       803 L~l~s~iv~k~~~~~~~~~------------~~il~---~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~  867 (1073)
T 3gjx_A          803 LSTMAIIVNKLGGHITAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA  867 (1073)
T ss_dssp             HHHHHHHHHHHGGGTGGGH------------HHHHH---HHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTT
T ss_pred             HHHHHHHHHHHHhhcchhH------------HHHHH---HHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHc
Confidence            8877777777766555332            23334   55599999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------hhhc-cCCCCC-CCchhH
Q 001032         1013 LSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------QAAG-INNSNG-NPEEGV 1080 (1183)
Q Consensus      1013 L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~-~~~~~l 1080 (1183)
                      +|++.|+.+++|+.||++|..++|+..+++++.++...+.++......++..          .|+| +.|+++ ..|..+
T Consensus       868 l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~i  947 (1073)
T 3gjx_A          868 IPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASI  947 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHH
Confidence            9999999999999999999999999999999999887664321111111111          1244 556543 444555


Q ss_pred             HHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHhhcCCCCCCCCCh
Q 001032         1081 LSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSTLDR 1159 (1183)
Q Consensus      1081 l~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~~F~~L~~~~~~~~~l~~ 1159 (1183)
                      +.+++.++.+..+..+....      .+     -.|+++.++++.+++.+. |+ ..++++..+...|++.        .
T Consensus       948 l~~l~~~~~~~~i~~~l~~~------~~-----~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~ 1007 (1073)
T 3gjx_A          948 LAYMFNLVEEGKISTPLNPG------NP-----VNNQMFIQDYVANLLKSAFPH-LQDAQVKLFVTGLFSL--------N 1007 (1073)
T ss_dssp             HHHHHHHHTTTCCSCSSSCT------TT-----TCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHS--------T
T ss_pred             HHHHHHHHHcCCcccccccc------CC-----CccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh--------c
Confidence            55555554443222222110      00     047889999999988654 53 6788899999999874        4


Q ss_pred             hhHHHHHHHHHHHHHHhhhhc
Q 001032         1160 VNYQRFRKNLTNFLVEVRGFL 1180 (1183)
Q Consensus      1160 ~nr~~F~~~l~~F~~~vr~~L 1180 (1183)
                      ++..+|+.++++|++++|+|=
T Consensus      1008 ~d~~~f~~~lrDFli~~ke~~ 1028 (1073)
T 3gjx_A         1008 QDIPAFKEHLRDFLVQIKEFA 1028 (1073)
T ss_dssp             TCHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHc
Confidence            688999999999999999873

PyMOL of 3gjx

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1183
d1w9ca_		321	a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho	6e-26
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.003

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 6e-26
 Identities = 42/298 (14%), Positives = 92/298 (30%), Gaps = 50/298 (16%)

Query: 903  RLLQLYSSHN-----IGKMLMTQSSCLLGEAKTEKYKDLR--ALFQLLSNLCSKDLVDFS 955
            +L+  + S +     + +  +      +           R   +   ++ + +K      
Sbjct: 51   KLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL----- 105

Query: 956  SDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLST 1015
               I A+   I   VF        +++ D  +YP+   ++F LL  +          +  
Sbjct: 106  GGHITAEIPQIFDAVFE---CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162

Query: 1016 EAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGN 1075
              F  VL ++ +   H    + D  L+ L  L     +E  A +                
Sbjct: 163  TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT----------- 211

Query: 1076 PEEGVLSRFLRSLLQLLL------FEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1129
                    +   +LQ +              M  +    +F L+  E        +    
Sbjct: 212  --------YFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV--EEGKISTSLNPGNP 261

Query: 1130 RQANPPFKSRLANALQSLT---SSNQLSSTL-----DRVNYQRFRKNLTNFLVEVRGF 1179
                   +  +AN L+S        Q+   +        +   F+++L +FLV+++ F
Sbjct: 262  VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEF 319

PyMOL of d1w9ca_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1183
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.88
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.5
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.37
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.26
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	86.91

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-22  Score=217.32  Aligned_cols=284  Identities=15%  Similarity=0.217  Sum_probs=205.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc-c---hhhhHHHHHHHHHHHhhhcccCcc-------------
Q 001032          854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV-Q---ETNIVIDFCTRLLQLYSSHNIGKM-------------  916 (1183)
Q Consensus       854 ~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l~~-~---~~~~lf~~~~~ll~~y~~~~~~~~-------------  916 (1183)
                      ..++.+++++|+.+++.+.       +.+...+..... +   ..+.+.|++++++++|.+++....             
T Consensus         5 ~~i~~dml~~Y~~~S~~I~-------~~i~~~G~~~~k~~~vr~lr~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~   77 (321)
T d1w9ca_           5 GRIYLDMLNVYKCLSENIS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDA   77 (321)
T ss_dssp             GGGHHHHHHHHHHHHHHHH-------HHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHhCChHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4578999999999999876       445544443333 2   247889999999999997753221             


Q ss_pred             -ccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHhhhhccccccccccccchhhhHHH
Q 001032          917 -LMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY  995 (1183)
Q Consensus       917 -~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~f  995 (1183)
                       ..+|..+.+...++|.+..+..+++-+.+.+....            ..+.+.+|   +++++||++|+.+||++|..|
T Consensus        78 vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v------------~~I~~~VF---e~Tl~MI~~df~~yPehR~~f  142 (321)
T d1w9ca_          78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI------------PQIFDAVF---ECTLNMINKDFEEYPEHRTNF  142 (321)
T ss_dssp             HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH------------HHHHHHHH---HHHHHHHSSTTTCSHHHHHHH
T ss_pred             HHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHH------------HHHHHHHH---HHHHHHHhccchhChHHHHHH
Confidence             35666677777888888877777766655544322            34555554   999999999999999999999


Q ss_pred             HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------h
Q 001032          996 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------Q 1065 (1183)
Q Consensus       996 f~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~----------~ 1065 (1183)
                      |+|++.+++.||+.+.++|+++|+.+++|+.||++|++++|+..|++++..|...+.+....+..++..          .
T Consensus       143 f~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~  222 (321)
T d1w9ca_         143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS  222 (321)
T ss_dssp             HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998876543222222221          1


Q ss_pred             hhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHH
Q 001032         1066 AAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLAN 1142 (1183)
Q Consensus      1066 ~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~ 1142 (1183)
                      ++| ..|+.+ ..|..++.++++++.+..+..+....      .+     ..|+.+.++++.+++.+. | -...+++..
T Consensus       223 vltD~~Hk~gf~~q~~iL~~Lf~ive~~~i~~~l~~~------~~-----~~n~~~l~e~l~~lL~~~Fp-~l~~~qi~~  290 (321)
T d1w9ca_         223 VVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPG------NP-----VNNQIFLQEYVANLLKSAFP-HLQDAQVKL  290 (321)
T ss_dssp             HHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSS------SC-----CCHHHHHHHHHHHHHHHHCT-TSCHHHHHH
T ss_pred             HHHChhHHHHHHHHHHHHHHHHHHHHccccccccccc------cc-----cchHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence            233 455543 33444444444444322221111110      00     145677888888888765 5 366788888


Q ss_pred             HHHHhhcCCCCCCCCChhhHHHHHHHHHHHHHHhhhh
Q 001032         1143 ALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1179 (1183)
Q Consensus      1143 ~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~ 1179 (1183)
                      +...|++.        +.|+.+|++++++|+.++|+|
T Consensus       291 fv~~Lf~~--------~~d~~~Fk~~lrDFLI~~kef  319 (321)
T d1w9ca_         291 FVTGLFSL--------NQDIPAFKEHLRDFLVQIKEF  319 (321)
T ss_dssp             HHHHHHHT--------TTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHc--------cCCHHHHHHHHHHHhHHhhhc
Confidence            88888863        578999999999999999997

PyMOL of d1w9ca_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure