Citrus Sinensis ID: 001046

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------
MDPPASDDGLKKLEYFSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHAILPPKSKSADKESKKEGGGDGKKTKFKALAIEDSRDKVKDLERELEAEARERRRGNEDREREDHYRNRDRDRDRQDRDRDRGRRDRDNQRGRHYVDDDDGGDRSRGRYRDRHETARRYDNKYGDRENDDSGDRSGRYRGNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGKDLLPLKKISEDDALGNNPSGTRDGPTTRMGLSGIRIVEEDGVVPSRRPLKRMSSPEKWEAKQLIASGVLSVEDYPMYDEEGDGLAYQEEGAEEELEIELNEDEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVDLAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
ccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEcccEEEEEcccccccccccccccccccccccHHHHccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHHHHHcccEEEEcccccccEEcHHHHHHHcccccccEEECccccHHHHHHHHHHHHHHHcccccccccEEEEEccccccccEEEEccHHHHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHcccccccEEEEccccccccEEEcccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHcccccccccccEEEEEEEHHHHccccccEEEEEccccccccccccccccccEEECcccHHcccccccccccccccccEEcccHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccEEEcccccEEEEccccccccccccEEEEEEEHHcccccccccccccccHHHHHcccccccccccccHHHHHHHHccHHHHHcccccccHHHcccc
**********KKLEYFSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHAIL***************************AIEDSR***********************************************************************************************************ELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGKDLLP**********************************************************LIASGVLSVEDYPMYDEEGDGLAYQEEGAEEELEIELNEDEPAFLQGQ*************************************************************************R*******DM*EWK**************KLSI**QRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQAS***********GPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRP*************FFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVDLAPRFFKVA**********************************
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MDPPASDDGLKKLEYFSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHAILPPKSKSADKESKKEGGGDGKKTKFKALAxxxxxxxxxxxxxxxxxxxxxxxxxxxxREREDHYRNRDRDRDRQDRDRDRGRRDRDNQRGRHYVDDDDGGDRSRGRYRDRHETARRYDNKYGDRENDDSGDRSGRYRGNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGKDLLPLKKISEDDALGNNPSGTRDGPTTRMGLSGIRIVEEDGVVPSRRPLKRMSSPEKWEAKQLIASGVLSVEDYPMYDEEGDGLAYQEEGAEEELEIELNEDEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRxxxxxxxxxxxxxxxxxxxxxTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVDLAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.confidentQ38953
ATP-dependent RNA helicase DHX8 Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.probableQ14562
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.probableQ09530

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.13RNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3I4U, chain A
Confidence level:very confident
Coverage over the Query: 906-1143
View the alignment between query and template
View the model in PyMOL
Template: 2XAU, chain A
Confidence level:very confident
Coverage over the Query: 514-1165
View the alignment between query and template
View the model in PyMOL
Template: 3KX2, chain B
Confidence level:very confident
Coverage over the Query: 460-1165
View the alignment between query and template
View the model in PyMOL
Template: 3AEV, chain A
Confidence level:very confident
Coverage over the Query: 219-319
View the alignment between query and template
View the model in PyMOL
Template: 1X4Q, chain A
Confidence level:probable
Coverage over the Query: 10-82
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3pgw, chain Sprobable Alignment | Template Structure
3pgw, chain Sprobable Alignment | Template Structure