Citrus Sinensis ID: 001070

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160-----

MSSQSQSQSPNQNQKQFDMRNWFPPYPPPSSSAAGDNFFPYPPPPPPPPPEPHANMHPHPYPHGPHRLLPYTPLPTTTVVSPNAGPQILALLNNNKSKHVGSTAPIYGKRVFGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCVQTQAIQQYSLNLFQCLPPPAESGGLERPDSSVSNDANGSRLSEFLFPSSTSKPSFSETTGAVRYPQLSTSHEATTSQENLTSKTESQPLSLARTTSDTNVVCVASPPLPLSPSFSRKHSGSINPPNSSELGSLLNEPGGSQPIIDSSFDGKTDTTQVLSHVPSLDSDANNDKINIAPNDISRALNPSMFKHPTHLITPSEILMSASSSETTNIIGGKNEEEVVVNSDAGNAEVEVKVLDETRFTHDEFGSRGESQNLVSENREKYLRYQATDPRIGMAAKCAGTSAETCVAEEAQEVDGAGIMETLAQPPCNDEAEVEDSTQDLDGGVSDSTMTTTFAQTGASSAKGKKQKEKKYQASSQCSPSSTVLNLANLSNEPAGSSSLPSAPAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDKAVNQLERSVNSRLEATVGRQIQAQFQTSGKHALQDALKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESVNSVSSMAQTLSGEFVDGQRKLFDLAGVRNNTSAFNPSVPLSNGPLLGLHEKVEATMDPTKELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPLPLSQGVLLSLLQQLACDINKDTARKLAWLTDVAAAINPADPMIAVHARPIFEQVYQRLHHQRSSPTISGAELSSIRLLIHVINSMLMTFK

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEccccccccccccccEEEEEEcECcccccECccEEEEcccEEEEECccccEEEEEEcccccccccccEEEEEECccccccCEEEcccccccccEEEEcccccccccEEEEEccccccEEEEEEccccccccccccccccEEEEEEEEccccccccHHHcccEEEEcccccEEEEEEccccEEEEEEEEcccccccccccccEEcccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHcccccccccccHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcc

********************************************************************LPYTPLPTTT***************************IYGKRVFGDYVAYDVDAVE********LEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCVQTQAIQQYSLNLFQCL****************************************************************************************************************************************************************************************************************************V******************************************************************************************************************************************************************************************************GIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDK******************************************ASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRES**********LSGEFVDGQRKLFDLAGVRN****************************************KYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPLPLSQGVLLSLLQQLACDINKDTARKLAWLTDVAAAINPADPMIAVHARPIFEQVYQRLH********SGAELSSIRLLIHVINSMLMTF*

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MSSQSQSQSPNQNQKQFDMRNWFPPYPPPSSSAAGDNFFPYPPPPPPPPPEPHANMHPHPYPHGPHRLLPYTPLPTTTVVSPNAGPQILALLNNNKSKHVGSTAPIYGKRVFGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCVQTQAIQQYSLNLFQCLPPPAESGGLERPDSSVSNDANGSRLSEFLFPSSTSKPSFSETTGAVRYPQLSTSHEATTSQENLTSKTESQPLSLARTTSDTNVVCVASPPLPLSPSFSRKHSGSINPPNSSELGSLLNEPGGSQPIIDSSFDGKTDTTQVLSHVPSLDSDANNDKINIAPNDISRALNPSMFKHPTHLITPSEILMSASSSETTNIIGGKNEEEVVVNSDAGNAEVEVKVLDETRFTHDEFGSRGESQNLVSENREKYLRYQATDPRIGMAAKCAGTSAETCVAEEAQEVDGAGIMETLAQPPCNDEAEVEDSTQDLDGGVSDSTMTTTFAQTGASSAKGKKQKEKKYQASSQCSPSSTVLNLANLSNEPAGSSSLPSAPAAFSQVIAxxxxxxxxxxxxxxxxxxxxxLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDKAVNQLERSVNSRLEATVGRQIQAQFQTSGKHALQDALKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESVNSVSSMAQTLSGEFVDGQRKLFDLAGVRNNTSAFNPSVPLSNGPLLGLHEKVEATMDPTKELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPLPLSQGVLLSLLQQLACDINKDTARKLAWLTDVAAAINPADPMIAVHARPIFEQVYQRLHHQRSSPTISGAELSSIRLLIHVINSMLMTFK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Enhancer of mRNA-decapping protein 4	As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development, especially during the formation of the shoot (SAM) and root apical meristems. Required for normal patterning of internal tissues of leaves.	probable	Q9LTT8

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2VXG, chain A
Confidence level:very confident
Coverage over the Query: 1027-1161
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Template: 1ERJ, chain A
Confidence level:confident
Coverage over the Query: 153-245,258-348
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Template: 3GRE, chain A
Confidence level:confident
Coverage over the Query: 107-245,258-308
View the alignment between query and template
View the model in PyMOL

Template: 1M2V, chain B
Confidence level:probable
Coverage over the Query: 50-62
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View the model in PyMOL

Template: 3S84, chain A
Confidence level:probable
Coverage over the Query: 783-816
View the alignment between query and template
View the model in PyMOL