Citrus Sinensis ID: 001106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1157 | 2.2.26 [Sep-21-2011] | |||||||
| Q4UM42 | 776 | DNA topoisomerase 1 OS=Ri | yes | no | 0.657 | 0.980 | 0.426 | 0.0 | |
| Q1RIM1 | 800 | DNA topoisomerase 1 OS=Ri | yes | no | 0.660 | 0.955 | 0.422 | 1e-180 | |
| Q68X45 | 779 | DNA topoisomerase 1 OS=Ri | yes | no | 0.657 | 0.976 | 0.424 | 1e-176 | |
| Q92IH1 | 776 | DNA topoisomerase 1 OS=Ri | yes | no | 0.657 | 0.980 | 0.418 | 1e-175 | |
| Q9ZDK2 | 776 | DNA topoisomerase 1 OS=Ri | yes | no | 0.658 | 0.981 | 0.424 | 1e-174 | |
| Q9X3X7 | 1212 | DNA topoisomerase 1 OS=Zy | yes | no | 0.547 | 0.523 | 0.443 | 1e-153 | |
| Q87AQ6 | 815 | DNA topoisomerase 1 OS=Xy | yes | no | 0.643 | 0.912 | 0.366 | 1e-130 | |
| Q9PEV8 | 815 | DNA topoisomerase 1 OS=Xy | yes | no | 0.646 | 0.917 | 0.361 | 1e-127 | |
| Q9KA23 | 690 | DNA topoisomerase 1 OS=Ba | yes | no | 0.534 | 0.895 | 0.386 | 1e-124 | |
| Q8NWZ9 | 689 | DNA topoisomerase 1 OS=St | yes | no | 0.518 | 0.870 | 0.394 | 1e-123 |
| >sp|Q4UM42|TOP1_RICFE DNA topoisomerase 1 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=topA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/784 (42%), Positives = 486/784 (61%), Gaps = 23/784 (2%)
Query: 351 VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHL 410
+V+VES KAK I YLGD ++V+ S+GH+RDL ++ GSV PD++F+M +++ A ++
Sbjct: 3 LVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYV 62
Query: 411 KSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIK 470
+I A+ + LA+DPDREGEAI+WH+ E++++++ + + RV F+EIT+ +I
Sbjct: 63 DAIVKDAKKADAVYLATDPDREGEAISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAII 122
Query: 471 VALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRE 530
A++ R++DANLV A ARRALDYL+GF +SPLLWRKLPGC+SAGRVQS AL LIC+RE
Sbjct: 123 HAVENPRKLDANLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICERE 182
Query: 531 MEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQK 590
EI+ FK +EYW + + + F A LTH ++L + SI + +AKD+ +K
Sbjct: 183 DEIERFKSEEYWDISLKMQNSNNE-----LFTAKLTHVNDQKLEKFSIINEKDAKDLTEK 237
Query: 591 INSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDG 650
+ S NF V K K+ R+ P+ITS+LQQ+AA KL FSA TM++AQKLYEGV +
Sbjct: 238 LKSQNFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKE 297
Query: 651 TAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIR 710
T GLITYMRTDG+ +S++A +IR LI + YG + P PR Y KVKNAQEAHEAIR
Sbjct: 298 T-IGLITYMRTDGVTLSNDAIADIRKLIDKNYGDKYLP-NSPRIYKSKVKNAQEAHEAIR 355
Query: 711 PTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSC 770
PT+I P L L++D KLY LIW RT+ACQM+ + + + + ++ + +++
Sbjct: 356 PTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVASLASENKEYLAKANG 415
Query: 771 SRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQP 830
S + F GF Y+E+ +++ E +L LK +PL E+ QH T+P
Sbjct: 416 STIAFDGFYKV----------YRESVDDEAEEENKMLPPLKEQEPLKTKEIIPNQHFTEP 465
Query: 831 PARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHY 890
P RYSE SLVKKLEELGIGRPSTYAS L VLQDR YV+++ + PE GR+V+ FL +
Sbjct: 466 PPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVSLEKKRFMPEELGRLVTVFLVGF 525
Query: 891 FSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKT 950
F + +Y FTA +E ELD ++AG EWK L ++WS F+ I ++ ++K
Sbjct: 526 FKKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKA 585
Query: 951 FGDSLFASLPNKD-RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEE 1009
LF+ NK+ ++CP C G L K+ +FGA F+ C+ +P C + + G+D+ E
Sbjct: 586 LDYHLFSE--NKESKACPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNE 641
Query: 1010 DTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDS 1069
+ +E K++G E + LK GPYG YVQLGE PKR+ V + +
Sbjct: 642 NDGDLAATPNENKVLGTDKDGIE-IYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQND 700
Query: 1070 ITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKA 1129
ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+ A
Sbjct: 701 ITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDA 760
Query: 1130 LEFL 1133
++ +
Sbjct: 761 MKLI 764
|
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 2 |
| >sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q68X45|TOP1_RICTY DNA topoisomerase 1 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q92IH1|TOP1_RICCN DNA topoisomerase 1 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9ZDK2|TOP1_RICPR DNA topoisomerase 1 OS=Rickettsia prowazekii (strain Madrid E) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9X3X7|TOP1_ZYMMO DNA topoisomerase 1 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=topA PE=3 SV=3 | Back alignment and function description |
|---|
| >sp|Q87AQ6|TOP1_XYLFT DNA topoisomerase 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9PEV8|TOP1_XYLFA DNA topoisomerase 1 OS=Xylella fastidiosa (strain 9a5c) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9KA23|TOP1_BACHD DNA topoisomerase 1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=topA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus (strain MW2) GN=topA PE=3 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1157 | ||||||
| 359476014 | 1185 | PREDICTED: DNA topoisomerase 1-like [Vit | 0.960 | 0.937 | 0.659 | 0.0 | |
| 356554445 | 1197 | PREDICTED: DNA topoisomerase 1-like [Gly | 0.713 | 0.689 | 0.758 | 0.0 | |
| 255574175 | 1071 | prokaryotic DNA topoisomerase, putative | 0.787 | 0.850 | 0.684 | 0.0 | |
| 356565868 | 1070 | PREDICTED: DNA topoisomerase 1-like [Gly | 0.734 | 0.794 | 0.728 | 0.0 | |
| 334187057 | 1284 | DNA topoisomerase, type IA, core [Arabid | 0.816 | 0.735 | 0.644 | 0.0 | |
| 449511968 | 1103 | PREDICTED: DNA topoisomerase 1-like, par | 0.702 | 0.737 | 0.715 | 0.0 | |
| 147787791 | 1039 | hypothetical protein VITISV_020021 [Viti | 0.821 | 0.914 | 0.640 | 0.0 | |
| 449437326 | 1126 | PREDICTED: DNA topoisomerase 1-like, par | 0.827 | 0.849 | 0.629 | 0.0 | |
| 449437328 | 1163 | PREDICTED: DNA topoisomerase 1-like [Cuc | 0.918 | 0.914 | 0.583 | 0.0 | |
| 297802912 | 1325 | DNA topoisomerase family protein [Arabid | 0.799 | 0.698 | 0.6 | 0.0 |
| >gi|359476014|ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1156 (65%), Positives = 883/1156 (76%), Gaps = 45/1156 (3%)
Query: 42 HRAFWNHQGIQLPPYPLIG-------SGLRFRKGRVTSAITISYPK-----VACDFFLFS 89
+R F N+ LP L G S + FRK + + + PK V +F +F
Sbjct: 35 YRGFQNYPATSLPCTRLNGGDKFGNFSQINFRKIGIPALVNNIQPKILRLNVNRNFHIFG 94
Query: 90 GRTDCSKGALSIHSHLK---PRS-SFCYMPLDNGIRFSSLNCEPFSKRCFSQLSRGKIGI 145
TD S+ A+ + S L+ P + + Y LD GIRFSS + +KR FSQ+ R K
Sbjct: 95 SLTDSSRFAVPVQSQLRLGFPNAVTPIYGTLDIGIRFSSPYYKALAKRPFSQVPRVKNKG 154
Query: 146 EKIGVSDARSGSGGGKSWFNKHRKR-----------NNAVSARGKSNATSSSISVSEDVN 194
+ +G+ D + + FNKHRK N AV A G SN + S S +
Sbjct: 155 DNLGIRDGTAENTSLFKPFNKHRKWEKSLTAHRRSFNGAVRAAG-SNQPTKVSSSSSRRS 213
Query: 195 AVN-----STSEQLVGDGVEGAKLGSS-----VSNTKQNSKPRARQQQQSRSKKKKEQLS 244
A+ + EQLV +G + A L S VSN + SK +Q++QSR+KK KEQ++
Sbjct: 214 ALGDGDMMTQQEQLVDNGRKDADLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQVT 273
Query: 245 ATVASEQASVGKSCKSVSQA-KSSKCKSEQCADLTSETSPGNTLEQPLASSALTKQQSKK 303
+T AS + KS KS S+A KS+ K Q + S GN + L SS TK QSKK
Sbjct: 274 STDASSDVAQKKSTKSSSEANKSNITKKSQSPQASKNNSTGNKPVEALDSSVSTKSQSKK 333
Query: 304 NSGNCGRKKKSAKATKASLQRQTSEEM-VIVPRGQNTQNPLYPPSGKSVVVVESVTKAKV 362
+G+ +K KS K S ++QT M I Q LYP SGKSVVVVESVTKAKV
Sbjct: 334 ATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVVESVTKAKV 393
Query: 363 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 422
IQGYLGDMYEVLPSYGHVRDLA RSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAEN
Sbjct: 394 IQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAEN 453
Query: 423 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 482
LILASDPDREGEAIAWHI+EML QQDALH+++TVARVVFHEITE+SIK AL A REID N
Sbjct: 454 LILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVN 513
Query: 483 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 542
LV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAAL+LICDREMEIDEFKPQEYW
Sbjct: 514 LVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYW 573
Query: 543 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 602
TVE ++K+ S+++ FP++LTHF SK+LNQ SI SHTEAK IEQ+INS F+VI S
Sbjct: 574 TVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVI-GS 632
Query: 603 KRSMVRKN-PTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRT 661
KR+ +RKN PTPYITSTLQQDAANKL+FSA YTMKLAQ+LYEGVQL DG AAGLITYMRT
Sbjct: 633 KRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRT 692
Query: 662 DGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAML 721
DGLH+SDEAAK+IRSL+ ERYGS+ A +G RKYFKKVKNAQEAHEAIRPTDI+RLP+ML
Sbjct: 693 DGLHVSDEAAKDIRSLVAERYGSNLA-SDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSML 751
Query: 722 SGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA 781
+G+LDED LKLY+LIWSRTMACQM+PAT+ QIQVDIGNA+ES+VFRS+CS VEF G+QA
Sbjct: 752 AGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAV 811
Query: 782 YEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVK 841
Y+DV+A AIR ENE N+R E F L+SLK GDPLYL +EL+QHHT PP+RYSEG+LVK
Sbjct: 812 YKDVEAKAIRVDENEGNERGEVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVK 871
Query: 842 KLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTA 901
KLEELGIGRPSTYA T+KVLQDRNYVTVK+R+LYPEFRGRMVSAFLSH+FSEVTDYSFTA
Sbjct: 872 KLEELGIGRPSTYAITMKVLQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTA 931
Query: 902 DMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPN 961
DMETELDNVSAGLTEWKGLL DYW+RFS YC ++HIHQVEKMLEK FGD LF+ LP+
Sbjct: 932 DMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPD 991
Query: 962 KDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEP 1021
K R+CP C EGTLIFKVSRFG+GYFIGC+QHP+C YIAK L GDDDEE Q T +EP
Sbjct: 992 KSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKT-FEEP 1050
Query: 1022 KLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRY 1081
K +G P S EK+LLK+GPYGFY+QLGEDR GYLPKRASVSHIKDV SITLEDALELLRY
Sbjct: 1051 KALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRY 1110
Query: 1082 PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGKDVRRC 1141
PV LGNHP D P++L+LA+ GFS+RHRRTIA VPKN+KPND+TLEKAL+ L GKDV++
Sbjct: 1111 PVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQS 1170
Query: 1142 GRPKGKPKREEALEAM 1157
GRPK K K++E EAM
Sbjct: 1171 GRPKNK-KKQEVYEAM 1185
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554445|ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255574175|ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] gi|223532629|gb|EEF34415.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356565868|ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|334187057|ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana] gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA, core [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449511968|ref|XP_004164103.1| PREDICTED: DNA topoisomerase 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|147787791|emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449437326|ref|XP_004136443.1| PREDICTED: DNA topoisomerase 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449437328|ref|XP_004136444.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297802912|ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315176|gb|EFH45599.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1157 | ||||||
| TIGR_CMR|SPO_3079 | 880 | SPO_3079 "DNA topoisomerase I" | 0.638 | 0.839 | 0.417 | 1.4e-144 | |
| TIGR_CMR|CBU_2000 | 765 | CBU_2000 "DNA topoisomerase I" | 0.519 | 0.785 | 0.442 | 1.2e-134 | |
| TIGR_CMR|NSE_0594 | 827 | NSE_0594 "DNA topoisomerase I" | 0.463 | 0.648 | 0.427 | 2.8e-120 | |
| TIGR_CMR|ECH_0750 | 820 | ECH_0750 "DNA topoisomerase I" | 0.473 | 0.668 | 0.401 | 1.7e-107 | |
| TIGR_CMR|CJE_1854 | 700 | CJE_1854 "DNA topoisomerase I" | 0.352 | 0.582 | 0.399 | 4.4e-106 | |
| TIGR_CMR|APH_0597 | 811 | APH_0597 "DNA topoisomerase I" | 0.410 | 0.585 | 0.425 | 1.2e-104 | |
| TIGR_CMR|DET_0717 | 703 | DET_0717 "DNA topoisomerase I" | 0.440 | 0.725 | 0.401 | 2.9e-99 | |
| TIGR_CMR|GSU_2549 | 757 | GSU_2549 "DNA topoisomerase I" | 0.358 | 0.548 | 0.463 | 1.3e-94 | |
| UNIPROTKB|P0A620 | 934 | topA "DNA topoisomerase 1" [My | 0.458 | 0.567 | 0.381 | 4.9e-91 | |
| TIGR_CMR|BA_3971 | 692 | BA_3971 "DNA topoisomerase I" | 0.352 | 0.589 | 0.421 | 5.1e-79 |
| TIGR_CMR|SPO_3079 SPO_3079 "DNA topoisomerase I" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 338/809 (41%), Positives = 466/809 (57%)
Query: 363 IQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAEN 422
I YLG Y VL SYGHVRDL A+ GSV P+ DF M WEV + + H+K+I AL+
Sbjct: 15 INKYLGSDYTVLASYGHVRDLPAKDGSVDPEHDFDMTWEVAADSRKHVKAIADALAEDNE 74
Query: 423 LILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDAN 482
LILA+DPDREGEAI+WH+ E L ++ ++ + V+RV F+ IT+ ++ A+Q R++D
Sbjct: 75 LILATDPDREGEAISWHLQEALTKRRSIKKGTAVSRVTFNAITKDAVTKAMQNPRQVDMP 134
Query: 483 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYW 542
LV+AYLARRALDYL+GFN+SP+LWRKLPG +SAGRVQS L LI +REMEI+ FKP EYW
Sbjct: 135 LVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVEREMEIEAFKPVEYW 194
Query: 543 TVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNS 602
+V+A+L+ + A L +L+++ I + T+A+ Q I S I++
Sbjct: 195 SVKALLETPRGQV-----YEARLVTLAGNKLDKMDISNATQAELAVQAITSRALS-IQSV 248
Query: 603 KRSMVRKNPT-PYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRT 661
+ +NP+ P++TSTLQQ+A+ K A + M AQ+LYE AG ITYMRT
Sbjct: 249 EAKPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQRLYE---------AGHITYMRT 299
Query: 662 DGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAML 721
DG+ ++ EA R I +R+G+ + P+ PR Y K KNAQEAHE IRPTD+R+ A L
Sbjct: 300 DGIDMAPEAVMATRDAIADRFGAEYVPDS-PRMYKNKAKNAQEAHECIRPTDMRKDAAAL 358
Query: 722 SGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAA 781
L DED +LY LIW RT+ACQM A + + V+IG+AD + R++ V F GF
Sbjct: 359 K-LKDEDQRRLYDLIWKRTIACQMAAARLERTTVEIGSADGQVGLRATGQVVLFDGFLRV 417
Query: 782 YE----DVDAGAIRYKENEENDRHEAFAILN-----SLKTGD-PLYLG-----EVELK-- 824
YE DV+ + FA + + TGD PL G E L
Sbjct: 418 YEEGRDDVENDEDKRLPQISMGEKAVFAKTSLADQFARATGDTPLTEGAKIAKEAILSEN 477
Query: 825 ------QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 878
QHHTQPP RY+E +LVK++EELGIGRPSTYAS + +QDR YV L PE
Sbjct: 478 EAVLALQHHTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLIPEE 537
Query: 879 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSL 938
+GR+V+ FL ++F + Y FTA++E +LD+VSAG ++K LL +W FS+ + L
Sbjct: 538 KGRIVTIFLLNFFRQYVGYEFTANLEEQLDDVSAGSRDYKDLLGRFWRDFSAAISETSEL 597
Query: 939 HIHQVEKMLEKTFGDSLFASLPNKD----RSCPVCGEGTLIFKVSRFGAGYFIGCNQHPR 994
I +V L++ L+ P +D R CP CG G L K SR G F+GC +P
Sbjct: 598 RISEVLDKLDEALAPQLYP--PREDGSDPRICPKCGTGQLHLKTSRTGG--FVGCGNYPE 653
Query: 995 CNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTG 1053
C Y + + GD D D+ +R L+G +++ LK+G +G YVQ GE
Sbjct: 654 CRY-TRPISGDAD--DSAER--------LLGEDGG--DEIWLKAGRFGPYVQRGEISEEN 700
Query: 1054 YLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIA 1113
P RAS+ + + LE AL LL P +G HP+ G I R G + H+
Sbjct: 701 KKPPRASLPRGWSAEDLDLEKALVLLSLPRQIGQHPEGGM-ISSNFGRFGPYLMHQLPDE 759
Query: 1114 SVP--KNMK-PNDVT---LEKALEFLSGK 1136
+ P N+K P+DV + +A+E L+ K
Sbjct: 760 AKPIYANLKDPSDVFEIGMNRAVELLAEK 788
|
|
| TIGR_CMR|CBU_2000 CBU_2000 "DNA topoisomerase I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|NSE_0594 NSE_0594 "DNA topoisomerase I" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|ECH_0750 ECH_0750 "DNA topoisomerase I" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CJE_1854 CJE_1854 "DNA topoisomerase I" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|APH_0597 APH_0597 "DNA topoisomerase I" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|DET_0717 DET_0717 "DNA topoisomerase I" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_2549 GSU_2549 "DNA topoisomerase I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P0A620 topA "DNA topoisomerase 1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_3971 BA_3971 "DNA topoisomerase I" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 5.99.1.2 | 0.737 |
| 3rd Layer | 5.99.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1157 | |||
| PRK07561 | 859 | PRK07561, PRK07561, DNA topoisomerase I subunit om | 0.0 | |
| PRK06599 | 675 | PRK06599, PRK06599, DNA topoisomerase I; Validated | 0.0 | |
| TIGR01051 | 610 | TIGR01051, topA_bact, DNA topoisomerase I, bacteri | 0.0 | |
| PRK05582 | 650 | PRK05582, PRK05582, DNA topoisomerase I; Validated | 0.0 | |
| PRK08780 | 780 | PRK08780, PRK08780, DNA topoisomerase I; Provision | 0.0 | |
| COG0550 | 570 | COG0550, TopA, Topoisomerase IA [DNA replication, | 0.0 | |
| PRK06319 | 860 | PRK06319, PRK06319, DNA topoisomerase I/SWI domain | 1e-145 | |
| cd00186 | 381 | cd00186, TOP1Ac, DNA Topoisomerase, subtype IA; DN | 1e-125 | |
| pfam01131 | 365 | pfam01131, Topoisom_bac, DNA topoisomerase | 1e-114 | |
| smart00437 | 259 | smart00437, TOP1Ac, Bacterial DNA topoisomerase I | 1e-83 | |
| PRK09401 | 1176 | PRK09401, PRK09401, reverse gyrase; Reviewed | 2e-75 | |
| COG1110 | 1187 | COG1110, COG1110, Reverse gyrase [DNA replication, | 8e-68 | |
| TIGR01054 | 1171 | TIGR01054, rgy, reverse gyrase | 4e-63 | |
| PRK07219 | 822 | PRK07219, PRK07219, DNA topoisomerase I; Validated | 1e-58 | |
| PRK07726 | 658 | PRK07726, PRK07726, DNA topoisomerase III; Provisi | 2e-53 | |
| TIGR01057 | 618 | TIGR01057, topA_arch, DNA topoisomerase I, archaea | 3e-52 | |
| cd03363 | 123 | cd03363, TOPRIM_TopoIA_TopoI, TOPRIM_TopoIA_TopoI: | 6e-52 | |
| PRK05776 | 670 | PRK05776, PRK05776, DNA topoisomerase I; Provision | 7e-52 | |
| PRK07220 | 740 | PRK07220, PRK07220, DNA topoisomerase I; Validated | 7e-44 | |
| TIGR01056 | 660 | TIGR01056, topB, DNA topoisomerase III, bacteria a | 2e-42 | |
| PRK14973 | 936 | PRK14973, PRK14973, DNA topoisomerase I; Provision | 5e-39 | |
| PTZ00407 | 805 | PTZ00407, PTZ00407, DNA topoisomerase IA; Provisio | 8e-38 | |
| smart00436 | 89 | smart00436, TOP1Bc, Bacterial DNA topoisomeraes I | 6e-34 | |
| cd01028 | 142 | cd01028, TOPRIM_TopoIA, TOPRIM_TopoIA: topoisomera | 1e-30 | |
| COG1754 | 298 | COG1754, COG1754, Uncharacterized C-terminal domai | 2e-29 | |
| PRK08173 | 862 | PRK08173, PRK08173, DNA topoisomerase III; Validat | 5e-26 | |
| PRK14701 | 1638 | PRK14701, PRK14701, reverse gyrase; Provisional | 1e-22 | |
| PRK14724 | 987 | PRK14724, PRK14724, DNA topoisomerase III; Provisi | 4e-22 | |
| PRK14701 | 1638 | PRK14701, PRK14701, reverse gyrase; Provisional | 2e-17 | |
| pfam01751 | 86 | pfam01751, Toprim, Toprim domain | 2e-17 | |
| COG1754 | 298 | COG1754, COG1754, Uncharacterized C-terminal domai | 2e-16 | |
| smart00493 | 75 | smart00493, TOPRIM, topoisomerases, DnaG-type prim | 7e-13 | |
| cd03361 | 170 | cd03361, TOPRIM_TopoIA_RevGyr, TopoIA_RevGyr : The | 2e-10 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 2e-09 | |
| cd03362 | 151 | cd03362, TOPRIM_TopoIA_TopoIII, TOPRIM_TopoIA_Topo | 2e-08 | |
| pfam01396 | 39 | pfam01396, zf-C4_Topoisom, Topoisomerase DNA bindi | 3e-05 | |
| COG0551 | 140 | COG0551, TopA, Zn-finger domain associated with to | 3e-04 | |
| pfam13368 | 57 | pfam13368, Toprim_C_rpt, Topoisomerase C-terminal | 8e-04 |
| >gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated | Back alignment and domain information |
|---|
Score = 844 bits (2182), Expect = 0.0
Identities = 315/818 (38%), Positives = 433/818 (52%), Gaps = 71/818 (8%)
Query: 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGS--------------VRPD 393
GKS+V+VES KAK I YLG Y V S GH+RDL + S V PD
Sbjct: 1 GKSLVIVESPAKAKTINKYLGSDYVVKASVGHIRDLPTSASSVPAKEKGALWARMGVDPD 60
Query: 394 DDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHEN 453
DF ++EV + +K A A+ L LA+DPDREGEAIAWH++E+L D
Sbjct: 61 HDFEALYEVLPGKEKVVSELKKAAKDADELYLATDPDREGEAIAWHLLEVLGGDD----- 115
Query: 454 ITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQ 513
+ V RVVF+EIT+ +I+ A + RE+D NLV A ARR LD L+G+ +SPLLW+K+
Sbjct: 116 VPVKRVVFNEITKNAIQEAFENPRELDINLVNAQQARRFLDRLVGYMVSPLLWKKIARGL 175
Query: 514 SAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRL 573
SAGRVQS A+ LI +RE EI+ F P+EYW + A L + F A LTH K+
Sbjct: 176 SAGRVQSVAVRLIVEREREIEAFVPEEYWDIHADLTTPRGDA-----FEARLTHLDGKKF 230
Query: 574 NQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATY 633
+ + + +A+ + A + V + RK P+ TSTLQQ+A+ KL FS
Sbjct: 231 APVDLLNEAQAEAAVAALEGARYSVASVEDKPTTRKPSAPFTTSTLQQEASRKLGFSVKK 290
Query: 634 TMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPR 693
TM++AQ+LYE AG ITYMRTD ++S EA R I + YG + PE+ PR
Sbjct: 291 TMRIAQRLYE---------AGYITYMRTDSTNLSQEAINAARGYIGDNYGKKYLPEK-PR 340
Query: 694 KYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQI 753
+Y K KNAQEAHEAIRP+D+ R P L GL + D +LY LIW R +A QM PA
Sbjct: 341 QYSSKAKNAQEAHEAIRPSDVFRTPDQLKGL-EGDAQRLYELIWKRFVASQMAPARYDST 399
Query: 754 QVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTG 813
V I A R++ + F GF Y + R ++ DR L +LK G
Sbjct: 400 TVTI--AAGDAELRATGRVLRFDGFLKVYVEG-----RDDALDDEDR-----RLPALKVG 447
Query: 814 DPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRI 873
D L L +++ QH T+PPARYSE SLVK+LE+LGIGRPSTYAS + +QDR YV +++R
Sbjct: 448 DALTLEKLDPTQHFTKPPARYSEASLVKELEKLGIGRPSTYASIISTIQDRGYVRLENRR 507
Query: 874 LYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCT 933
YPE GR+V+ L +F + DY FTA ME ELD+++ G +WK +L D++ FS
Sbjct: 508 FYPEKMGRIVTDRLEEFFPRLVDYDFTARMEEELDDIANGEADWKPVLDDFYKDFS---- 563
Query: 934 CAQSLHIHQVEKMLEKTFGDSLFASLPN-KDRSCPVCGEGTLIFKVSRFGAGYFIGC--- 989
Q+EK E + + DR CP CG G + + + G F+GC
Sbjct: 564 -------QQLEKAEELREEGGMRPNQMVITDRDCPTCGRG-MGIRTGKTGV--FLGCSGY 613
Query: 990 NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGE 1049
RC ++ + E + +G P ++L+SG +G YVQ GE
Sbjct: 614 ALKERCKTTRNLTPEEETLNVLEGED---AETRALGADPECGTAMVLRSGRFGPYVQEGE 670
Query: 1050 DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHR 1109
P+R S+ + + + LE AL LL P +G HP+ G I ++ R G V+
Sbjct: 671 GDK---PRRLSLPKGNNPECVGLEIALGLLSLPRPVGEHPECGSEIQAKIGRFGPYVKCG 727
Query: 1110 RTIASVPKNMKPNDVTLEKALEFLSGKDVRRCGRPKGK 1147
T AS+ K + L +A+E L+ +
Sbjct: 728 GTYASLKNTRKVLTIGLNRAVELLAEPKRPKEDPVPLP 765
|
Length = 859 |
| >gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233249 TIGR01051, topA_bact, DNA topoisomerase I, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|181555 PRK08780, PRK08780, DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|238110 cd00186, TOP1Ac, DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases | Back alignment and domain information |
|---|
| >gnl|CDD|216317 pfam01131, Topoisom_bac, DNA topoisomerase | Back alignment and domain information |
|---|
| >gnl|CDD|214663 smart00437, TOP1Ac, Bacterial DNA topoisomerase I DNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233251 TIGR01054, rgy, reverse gyrase | Back alignment and domain information |
|---|
| >gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233253 TIGR01057, topA_arch, DNA topoisomerase I, archaeal | Back alignment and domain information |
|---|
| >gnl|CDD|173783 cd03363, TOPRIM_TopoIA_TopoI, TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I | Back alignment and domain information |
|---|
| >gnl|CDD|235602 PRK05776, PRK05776, DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative plasmid | Back alignment and domain information |
|---|
| >gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173597 PTZ00407, PTZ00407, DNA topoisomerase IA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214662 smart00436, TOP1Bc, Bacterial DNA topoisomeraes I ATP-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|173778 cd01028, TOPRIM_TopoIA, TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA) | Back alignment and domain information |
|---|
| >gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216679 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|214695 smart00493, TOPRIM, topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins | Back alignment and domain information |
|---|
| >gnl|CDD|173781 cd03361, TOPRIM_TopoIA_RevGyr, TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|173782 cd03362, TOPRIM_TopoIA_TopoIII, TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III | Back alignment and domain information |
|---|
| >gnl|CDD|110400 pfam01396, zf-C4_Topoisom, Topoisomerase DNA binding C4 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|222079 pfam13368, Toprim_C_rpt, Topoisomerase C-terminal repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1157 | |||
| PRK08780 | 780 | DNA topoisomerase I; Provisional | 100.0 | |
| PRK07561 | 859 | DNA topoisomerase I subunit omega; Validated | 100.0 | |
| PRK06319 | 860 | DNA topoisomerase I/SWI domain fusion protein; Val | 100.0 | |
| PRK06599 | 675 | DNA topoisomerase I; Validated | 100.0 | |
| PRK05776 | 670 | DNA topoisomerase I; Provisional | 100.0 | |
| PRK07219 | 822 | DNA topoisomerase I; Validated | 100.0 | |
| COG0550 | 570 | TopA Topoisomerase IA [DNA replication, recombinat | 100.0 | |
| PRK05582 | 650 | DNA topoisomerase I; Validated | 100.0 | |
| TIGR01051 | 610 | topA_bact DNA topoisomerase I, bacterial. This mod | 100.0 | |
| PRK07220 | 740 | DNA topoisomerase I; Validated | 100.0 | |
| TIGR01056 | 660 | topB DNA topoisomerase III, bacteria and conjugati | 100.0 | |
| PRK14973 | 936 | DNA topoisomerase I; Provisional | 100.0 | |
| PRK08173 | 862 | DNA topoisomerase III; Validated | 100.0 | |
| PRK14724 | 987 | DNA topoisomerase III; Provisional | 100.0 | |
| PRK07726 | 658 | DNA topoisomerase III; Provisional | 100.0 | |
| TIGR01057 | 618 | topA_arch DNA topoisomerase I, archaeal. This mode | 100.0 | |
| PTZ00407 | 805 | DNA topoisomerase IA; Provisional | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| KOG1956 | 758 | consensus DNA topoisomerase III alpha [Replication | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| cd00186 | 381 | TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, | 100.0 | |
| PF01131 | 403 | Topoisom_bac: DNA topoisomerase; InterPro: IPR0134 | 100.0 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 100.0 | |
| smart00437 | 259 | TOP1Ac Bacterial DNA topoisomerase I DNA-binding d | 100.0 | |
| KOG1957 | 555 | consensus DNA topoisomerase III beta [Replication, | 100.0 | |
| cd03363 | 123 | TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoi | 99.97 | |
| cd01028 | 142 | TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase | 99.96 | |
| cd03362 | 151 | TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The t | 99.96 | |
| smart00436 | 89 | TOP1Bc Bacterial DNA topoisomeraes I ATP-binding d | 99.96 | |
| cd03361 | 170 | TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisome | 99.94 | |
| COG1754 | 298 | Uncharacterized C-terminal domain of topoisomerase | 99.93 | |
| COG1754 | 298 | Uncharacterized C-terminal domain of topoisomerase | 99.87 | |
| PF01751 | 100 | Toprim: Toprim domain; InterPro: IPR006171 This is | 99.83 | |
| PRK08780 | 780 | DNA topoisomerase I; Provisional | 99.66 | |
| PRK07561 | 859 | DNA topoisomerase I subunit omega; Validated | 99.65 | |
| PF13368 | 61 | Toprim_C_rpt: Topoisomerase C-terminal repeat | 98.69 | |
| COG0551 | 140 | TopA Zn-finger domain associated with topoisomeras | 98.64 | |
| smart00493 | 76 | TOPRIM topoisomerases, DnaG-type primases, OLD fam | 98.58 | |
| PRK06319 | 860 | DNA topoisomerase I/SWI domain fusion protein; Val | 98.4 | |
| PF01396 | 39 | zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc | 98.38 | |
| cd01025 | 112 | TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TO | 98.37 | |
| PF13368 | 61 | Toprim_C_rpt: Topoisomerase C-terminal repeat | 98.35 | |
| PRK07219 | 822 | DNA topoisomerase I; Validated | 97.96 | |
| cd00188 | 83 | TOPRIM Topoisomerase-primase domain. This is a nuc | 97.51 | |
| COG0551 | 140 | TopA Zn-finger domain associated with topoisomeras | 97.37 | |
| PRK00076 | 196 | recR recombination protein RecR; Reviewed | 97.34 | |
| PRK14973 | 936 | DNA topoisomerase I; Provisional | 97.31 | |
| cd01027 | 81 | TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The to | 96.86 | |
| PRK06599 | 675 | DNA topoisomerase I; Validated | 96.74 | |
| PF01396 | 39 | zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc | 96.46 | |
| COG4026 | 290 | Uncharacterized protein containing TOPRIM domain, | 95.16 | |
| PF13662 | 81 | Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B | 94.6 | |
| PF09151 | 36 | DUF1936: Domain of unknown function (DUF1936); Int | 94.54 | |
| PRK07220 | 740 | DNA topoisomerase I; Validated | 94.34 | |
| PRK13844 | 200 | recombination protein RecR; Provisional | 94.31 | |
| TIGR00334 | 174 | 5S_RNA_mat_M5 ribonuclease M5. This family of orth | 93.9 | |
| TIGR00615 | 195 | recR recombination protein RecR. This family is ba | 93.6 | |
| PRK05582 | 650 | DNA topoisomerase I; Validated | 92.75 | |
| COG1658 | 127 | Small primase-like proteins (Toprim domain) [DNA r | 92.67 | |
| COG0353 | 198 | RecR Recombinational DNA repair protein (RecF path | 91.28 | |
| PRK04031 | 408 | DNA primase; Provisional | 82.41 | |
| TIGR01057 | 618 | topA_arch DNA topoisomerase I, archaeal. This mode | 81.34 |
| >PRK08780 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-161 Score=1487.24 Aligned_cols=757 Identities=39% Similarity=0.632 Sum_probs=672.2
Q ss_pred CCCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEc
Q 001106 347 SGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILA 426 (1157)
Q Consensus 347 ~~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlA 426 (1157)
|+++|||||||+||++|++|||.+|+|+||+|||++|+.++.+++++.+|.+.|.+.++++++++.|++++++||.||||
T Consensus 1 m~~~LiIvEsPskAk~I~~~Lg~~y~V~as~GHi~dL~~~~~~vd~~~~f~~~y~~~~~k~~~~~~lk~~~k~ad~vilA 80 (780)
T PRK08780 1 MSKHLVIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKNEKHVEAIAKAAKSADDLYLA 80 (780)
T ss_pred CCCeEEEEeCHHHHHHHHHHcCCCCEEEeccCCcccCCCcccCCChhhCCceEEEEcCchHHHHHHHHHHHHhCCEEEEC
Confidence 56899999999999999999999999999999999999988888888789999998888999999999999999999999
Q ss_pred cCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhHhhhhhccHHHH
Q 001106 427 SDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLW 506 (1157)
Q Consensus 427 TDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~lt 506 (1157)
||||||||+|||||+++|+..+. ...++|+|+|||+||+++|++||+|++++|++|++||+|||++|||||||+||+||
T Consensus 81 tD~DREGE~Ia~~i~~~l~~~~~-~~~~~v~Ri~f~eiT~~aI~~A~~n~r~~d~~l~~A~~aRr~lD~lvG~~lSr~l~ 159 (780)
T PRK08780 81 TDPDREGEAISWHLAEILKERGL-LKDKPMQRVVFTEITPRAIKEAMAKPRDIASDLVDAQQARRALDYLVGFNLSPLLW 159 (780)
T ss_pred CCCCcccHHHHHHHHHHhccccc-CCCCceEEEEEccCCHHHHHHHHhCCCcCcHhHHHHHHHHHHHHHhcCeeecHHHH
Confidence 99999999999999999964211 12468999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEEecCcCCCCCCceeeeeecccccccccccccCCHHHHHH
Q 001106 507 RKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKD 586 (1157)
Q Consensus 507 ~k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~ 586 (1157)
+++++.+|+||||||||+|||+||+||++|+|++||.|.+.+... +..|.++|...++.++++++|.|+++|++
T Consensus 160 ~~~~~~lSaGRVQspaL~lIveRE~eI~~F~p~~yw~i~~~~~~~------~~~f~a~~~~~~~~~~~~~~~~~~~~a~~ 233 (780)
T PRK08780 160 RKIQRGLSAGRVQSPALRMIVEREEEIEAFIAREYWSIEADCAHP------SQPFNAKLIKLDGQKFEQFTITDGDTAEA 233 (780)
T ss_pred HhhCCCCcccccHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecC------CceEEEEEEecCCccccccccCCHHHHHH
Confidence 999888999999999999999999999999999999999999632 34688888766665555678999999999
Q ss_pred HHHHHcc---CCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCC
Q 001106 587 IEQKINS---ANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDG 663 (1157)
Q Consensus 587 i~~~l~~---~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS 663 (1157)
+++.|+. ..++|.+|+.++++++||+||+|++||++||++|||||++||++||+|||+++|++|++.||||||||||
T Consensus 234 i~~~~~~~~~~~~~V~~v~~k~~~~~pp~Pf~tstLQq~As~klg~s~~~Tm~iAQ~LYE~~~~~~~~~~glITYpRTDS 313 (780)
T PRK08780 234 ARLRIQQAAQGTLHVTDVESKERKRNPAPPFTTSTLQQEASRKLGFTTRRTMQVAQKLYEGVDLGDEGSVGLITYMRTDS 313 (780)
T ss_pred HHHHHhhccCCCeEEEEEEeeeeecCCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccccCCceeEEEecccCC
Confidence 9999974 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHc
Q 001106 664 LHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMAC 743 (1157)
Q Consensus 664 ~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~q~AH~AI~PT~~~~~p~~l~~~Ls~dE~klY~LI~rRfLAs 743 (1157)
++||++++.+++++|...||..|.+ ..++.+..+.+++|+||||||||+....|+.+...|+++|++||+|||+||||+
T Consensus 314 ~~ls~~~~~~~~~~i~~~~g~~~~~-~~~~~~~~~~~~~q~aHeAI~PT~~~~~p~~~~~~L~~de~klY~LI~~R~lAs 392 (780)
T PRK08780 314 VNLSQDALAEIRDVIARDYGTASLP-DQPNTYKTKSKNAQEAHEAVRPTSALRTPAQVARFLSDDQRRLYELIWKRAVAC 392 (780)
T ss_pred ccCCHHHHHHHHHHHHHHhChhhhh-hcccccCCCCCCCcCCCCCCCCCCCCcChhhhhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765 445666666677899999999998655676555579999999999999999999
Q ss_pred cCCCcEEEEEEEEEEecCccEEEEEEEEEEEEcCceecccccchhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEe
Q 001106 744 QMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVEL 823 (1157)
Q Consensus 744 ~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i 823 (1157)
||+||+|++++|++.+++ .+.|+++|++++++||+++|.+...+ ++.+++ +....||.|++||.+.+.++.+
T Consensus 393 ~m~~a~~~~t~v~~~~~~-~~~F~a~G~~i~~~G~~~vy~~~~~~-----~~~~~~--~~~~~LP~l~~G~~~~~~~~~~ 464 (780)
T PRK08780 393 QMIPATLNTVSVDLAAGS-EHVFRATGSTVVVPGFLAVYEEGKDD-----KSAEDE--DEGRKLPPMKEGDNVPLERIRA 464 (780)
T ss_pred hCchhEEEEEEEEEEeCC-eeEEEEEEEEEeEcCeEEeecccccc-----cccccc--chhccCCCcCCCCEeeeeeeee
Confidence 999999999999998753 26899999999999999999653210 000000 0114699999999999999999
Q ss_pred eecccCCCCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhcccccccChhhhHHH
Q 001106 824 KQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADM 903 (1157)
Q Consensus 824 ~e~~TkPP~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~ 903 (1157)
.+++|+||+|||||+||++||+.|||||||||+||++|++|+||..+++.|+||++|+.|+++|..+|+.|+||+|||.|
T Consensus 465 ~~~~T~PP~ryTEasLik~mE~~GIGtpST~A~iI~~L~~R~Yv~~~~k~l~pT~~G~~v~~~L~~~f~~l~~~~~Ta~~ 544 (780)
T PRK08780 465 EQHFTEPPPRYTEASLVKALEEYGIGRPSTYASIISTLQFRKYVEMEGRRFRPTDVGRAVNKFLTGHFTRYVDYDFTARL 544 (780)
T ss_pred eeeecCCCCCCCHHHHHHHHHhCCCCchhhHHHHHHHHHhCCcEeccCCEEeecHHHHHHHHHHHHhchhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhhcCccHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHhhhCCCccCCCCCCCCCCCCCCCceEEEEecccCc
Q 001106 904 ETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGA 983 (1157)
Q Consensus 904 E~~Ld~Ia~G~~~~~~~l~~F~~~f~~~v~~~~~~~i~~V~k~l~~~~g~~~~~~~~~~~g~CPkCGkg~lv~K~gr~G~ 983 (1157)
|.+||+|++|+.+|++||++||+.|...+..+.. .+... . . ......+.||.||+ .++++.||||+
T Consensus 545 E~~Ld~I~~G~~~~~~~l~~~~~~~~~~~~~~~~----~i~~~-----~---~-~~~r~lG~cP~CG~-~l~~r~gr~G~ 610 (780)
T PRK08780 545 EDDLDAVSRGEKEWIPLMEKFWGPFKELVEEKKD----SVDRT-----E---A-GQVRELGTDPKSGK-PVSVRIGRFGP 610 (780)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh----hhhhc-----c---c-cccccCCCCCCCCC-EEEEEeCCCCC
Confidence 9999999999999999999999998876543211 11100 0 0 01133679999996 78889999998
Q ss_pred eeEEec-----CCCCCCcccccCCCCCCchhhhhhhccCCCCCcccCCCCCccceeeeccCCCcceEEeCCCCCCCCCcc
Q 001106 984 GYFIGC-----NQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKR 1058 (1157)
Q Consensus 984 ~~F~GC-----snyP~Ck~t~~~~~~~~~~~e~~~~~~~~~~Pr~LG~cPkcGk~V~lK~GrfG~yv~c~~d~kg~~~k~ 1058 (1157)
||+| +++|.|..........+++.+.+. .++.+||.+|.+|+ |++|+++.||||+||+++ +++
T Consensus 611 --fl~~g~~~~~~~p~~asl~~~~~~~~itle~A~--~ll~~pr~lG~~P~-g~~I~~~~GRfGpYv~~~-------~~~ 678 (780)
T PRK08780 611 --MVQIGTKDDEEKPRFASLRPGQSIDSITLEEAL--ELFKLPRALGETDE-GEDVSVGIGRFGPFVKRG-------SKY 678 (780)
T ss_pred --eeeccCcccccccccccCCCCCCcccCCHHHHH--HHhcCccccCcCCC-CCeeEEeeCCCCCeEeeC-------Ccc
Confidence 8899 468999988777777777776665 35677999999995 889999999999999986 378
Q ss_pred ccCCCCCCccccCHHHHHHHhcC------CcccCCCCCCCcCeEEeeccCcceeecCCeeeecCCCCCCCCCCHHHHHHH
Q 001106 1059 ASVSHIKDVDSITLEDALELLRY------PVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEF 1132 (1157)
Q Consensus 1059 ~slpk~~~~~sItLe~Al~ll~~------pk~lG~cP~cG~~v~v~~GryG~yi~~~~~~~~ipk~~~~~~itle~A~~L 1132 (1157)
+++|+..++++|||++|+.||.. ++.++.|| |+.|.+..||||||+.+++.+++||++.++.++|+++|++|
T Consensus 679 ~sl~k~~~~~~itle~A~~ll~~k~~~~~~~~l~~~~--~~~i~~~~Gr~Gpyv~~~k~~~~lpk~~~~~~~tle~a~~l 756 (780)
T PRK08780 679 ASLKKEDDPYTIDLARALFLIEEKEEIARNRVIKDFE--GSGIQVLNGRYGPYITDGKLNGKIPKDREPASLTLEEVQQL 756 (780)
T ss_pred cCCCCCCCcccCCHHHHHHHHHhhhhccCCccccccC--CCceEeecCCCCccccccccccccCCCCCcccccHHHHHHH
Confidence 89999999999999999999987 67788887 57899999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCC
Q 001106 1133 LSGKDVRRCGRPKGK 1147 (1157)
Q Consensus 1133 L~~k~~k~~gr~~~~ 1147 (1157)
|+++.+|+++||+++
T Consensus 757 i~~~~~~~~~~~~~~ 771 (780)
T PRK08780 757 LADAPVRKGFRAKKA 771 (780)
T ss_pred HhCcccccCCCcccc
Confidence 999998998998876
|
|
| >PRK07561 DNA topoisomerase I subunit omega; Validated | Back alignment and domain information |
|---|
| >PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated | Back alignment and domain information |
|---|
| >PRK06599 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >PRK05776 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >PRK07219 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05582 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >TIGR01051 topA_bact DNA topoisomerase I, bacterial | Back alignment and domain information |
|---|
| >PRK07220 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >TIGR01056 topB DNA topoisomerase III, bacteria and conjugative plasmid | Back alignment and domain information |
|---|
| >PRK14973 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >PRK08173 DNA topoisomerase III; Validated | Back alignment and domain information |
|---|
| >PRK14724 DNA topoisomerase III; Provisional | Back alignment and domain information |
|---|
| >PRK07726 DNA topoisomerase III; Provisional | Back alignment and domain information |
|---|
| >TIGR01057 topA_arch DNA topoisomerase I, archaeal | Back alignment and domain information |
|---|
| >PTZ00407 DNA topoisomerase IA; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases | Back alignment and domain information |
|---|
| >PF01131 Topoisom_bac: DNA topoisomerase; InterPro: IPR013497 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain | Back alignment and domain information |
|---|
| >KOG1957 consensus DNA topoisomerase III beta [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I | Back alignment and domain information |
|---|
| >cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA) | Back alignment and domain information |
|---|
| >cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III | Back alignment and domain information |
|---|
| >smart00436 TOP1Bc Bacterial DNA topoisomeraes I ATP-binding domain | Back alignment and domain information |
|---|
| >cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria | Back alignment and domain information |
|---|
| >COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only] | Back alignment and domain information |
|---|
| >COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only] | Back alignment and domain information |
|---|
| >PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase | Back alignment and domain information |
|---|
| >PRK08780 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >PRK07561 DNA topoisomerase I subunit omega; Validated | Back alignment and domain information |
|---|
| >PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat | Back alignment and domain information |
|---|
| >COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins | Back alignment and domain information |
|---|
| >PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated | Back alignment and domain information |
|---|
| >PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR | Back alignment and domain information |
|---|
| >PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat | Back alignment and domain information |
|---|
| >PRK07219 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >cd00188 TOPRIM Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00076 recR recombination protein RecR; Reviewed | Back alignment and domain information |
|---|
| >PRK14973 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
| >cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea | Back alignment and domain information |
|---|
| >PRK06599 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] | Back alignment and domain information |
|---|
| >PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A | Back alignment and domain information |
|---|
| >PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins | Back alignment and domain information |
|---|
| >PRK07220 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >PRK13844 recombination protein RecR; Provisional | Back alignment and domain information |
|---|
| >TIGR00334 5S_RNA_mat_M5 ribonuclease M5 | Back alignment and domain information |
|---|
| >TIGR00615 recR recombination protein RecR | Back alignment and domain information |
|---|
| >PRK05582 DNA topoisomerase I; Validated | Back alignment and domain information |
|---|
| >COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK04031 DNA primase; Provisional | Back alignment and domain information |
|---|
| >TIGR01057 topA_arch DNA topoisomerase I, archaeal | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1157 | ||||
| 1cy1_A | 599 | Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt | 5e-95 | ||
| 1ecl_A | 597 | Amino Terminal 67kda Domain Of Escherichia Coli Dna | 1e-94 | ||
| 3pwt_A | 596 | Crystal Structure Of Mutant E.Coli Topoisomerase Ia | 2e-94 | ||
| 1mw8_X | 592 | Crystal Structure Of A Complex Between H365r Mutant | 4e-94 | ||
| 3px7_A | 595 | Crystal Structure Of Covalent Complex Of Topoisomer | 1e-93 | ||
| 2gai_A | 633 | Structure Of Full Length Topoisomerase I From Therm | 6e-93 | ||
| 1gl9_B | 1054 | Archaeoglobus Fulgidus Reverse Gyrase Complexed Wit | 1e-38 | ||
| 1gku_B | 1054 | Reverse Gyrase From Archaeoglobus Fulgidus Length = | 1e-38 | ||
| 1cy9_A | 264 | Crystal Structure Of The 30 Kda Fragment Of E. Coli | 5e-35 | ||
| 4ddt_A | 1104 | Thermotoga Maritima Reverse Gyrase, C2 Form 2 Lengt | 4e-30 | ||
| 2o19_A | 659 | Structure Of E. Coli Topoisomersae Iii In Complex W | 4e-21 | ||
| 1d6m_A | 653 | Crystal Structure Of E. Coli Dna Topoisomerase Iii | 4e-21 | ||
| 1i7d_A | 659 | Noncovalent Complex Of E.Coli Dna Topoisomerase Iii | 8e-21 |
| >pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt Length = 599 | Back alignment and structure |
|
| >pdb|1ECL|A Chain A, Amino Terminal 67kda Domain Of Escherichia Coli Dna Topoisomerase I (Residues 2-590 Of Mature Protein) Cloning Artifact Adds Two Residues To The Amino-Terminus Which Were Not Observed In The Experimental Electron Density (Gly-2, Ser-1) Length = 597 | Back alignment and structure |
| >pdb|3PWT|A Chain A, Crystal Structure Of Mutant E.Coli Topoisomerase Ia Length = 596 | Back alignment and structure |
| >pdb|1MW8|X Chain X, Crystal Structure Of A Complex Between H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I And 5'-Acttcgggatg-3' Length = 592 | Back alignment and structure |
| >pdb|3PX7|A Chain A, Crystal Structure Of Covalent Complex Of Topoisomerase 1a With Substrate Length = 595 | Back alignment and structure |
| >pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633 | Back alignment and structure |
| >pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp Length = 1054 | Back alignment and structure |
| >pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus Length = 1054 | Back alignment and structure |
| >pdb|1CY9|A Chain A, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna Topoisomerase I. Monoclinic Form Length = 264 | Back alignment and structure |
| >pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2 Length = 1104 | Back alignment and structure |
| >pdb|2O19|A Chain A, Structure Of E. Coli Topoisomersae Iii In Complex With An 8- Base Single Stranded Oligonucleotide. Frozen In Glycerol At Ph 5.5 Length = 659 | Back alignment and structure |
| >pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii Length = 653 | Back alignment and structure |
| >pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With An 8-Base Single-Stranded Dna Oligonucleotide Length = 659 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* Length = 633 | Back alignment and structure |
|---|
Score = 762 bits (1970), Expect = 0.0
Identities = 225/716 (31%), Positives = 335/716 (46%), Gaps = 84/716 (11%)
Query: 345 PPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPS 404
K +VVES KAK I+ LG+ YEV S GH+ DL V + DF + V
Sbjct: 2 AKKVKKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIK 61
Query: 405 AAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEI 464
++ +K E L++ASD DREGEAIAWHI + + R+VF EI
Sbjct: 62 GKEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNTLGRKN------RIVFSEI 114
Query: 465 TEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALS 524
T I+ A++ REID V+A LARR LD ++G+++SP+LWR SAGRVQSA L
Sbjct: 115 TPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLK 174
Query: 525 LICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEA 584
L+CDRE EI F P++Y + D K +A
Sbjct: 175 LVCDREREILRFVPKKYHRITVNFDGL-------------TAEIDVKEKKFF------DA 215
Query: 585 KDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEG 644
+ +++ + V + P P+ TSTLQQ+A +KL FS + TM +AQ+LYEG
Sbjct: 216 ETLKEIQSIDELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEG 275
Query: 645 VQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQE 704
V+ DG ITYMRTD +SD A +E R+LI E +G + + + K Q+
Sbjct: 276 VETKDGHI-AFITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSK-RERR-KSNAKIQD 332
Query: 705 AHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESI 764
AHEAIRPT++ P L+ D KLY LIW R +A QM+P+ + + + D
Sbjct: 333 AHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDGKY 392
Query: 765 VFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELK 824
F+ + + F G++ ++ E N + G+ + V+++
Sbjct: 393 RFKGTVLKKIFDGYEKVWKT-----------ERNTG------EFPFEEGESVKPVVVKIE 435
Query: 825 QHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVS 884
+ T+P RY+EGSLVK++E LGIGRPSTYAST+K+L +R Y+ LYP G +V
Sbjct: 436 EQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVM 495
Query: 885 AFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVE 944
+L +S+V SFTA+ME +LD V G K +L +++ FS +
Sbjct: 496 DYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFS-----------SVFD 544
Query: 945 KMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYG 1004
+ ++ C CG + ++G ++ C C +++
Sbjct: 545 RNDRIVVDFPT-------NQKCS-CG-KEMRLSFGKYGF--YLKC----ECGKT-RSVKN 588
Query: 1005 DDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRAS 1060
D+ +D+ K+ S+ G + R G K+ S
Sbjct: 589 DEIAV--------IDDGKIFLGRKDSESGSPDGRSVEGKGNLSEKRRKG---KKGS 633
|
| >1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A* Length = 592 | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
| >1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* Length = 659 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1157 | |||
| 2gai_A | 633 | DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A | 100.0 | |
| 1mw9_X | 592 | DNA topoisomerase I; decatenase enzyme, toprim dom | 100.0 | |
| 1i7d_A | 659 | DNA topoisomerase III; decatenating enzyme, protei | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 2fcj_A | 119 | Small toprim domain protein; structural genomics, | 95.98 | |
| 1vdd_A | 228 | Recombination protein RECR; helix-hairpin-helix, z | 95.46 | |
| 2gai_A | 633 | DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A | 94.9 | |
| 3vdp_A | 212 | Recombination protein RECR; zinc finger, DNA repai | 91.46 | |
| 1t6t_1 | 118 | Putative protein; structural genomics, PSI, protei | 83.04 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 81.12 |
| >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-143 Score=1303.30 Aligned_cols=626 Identities=34% Similarity=0.475 Sum_probs=515.1
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCCCCCCCCCCcceEecccchHHHHHHHHHHhccCCeEEEcc
Q 001106 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILAS 427 (1157)
Q Consensus 348 ~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~~v~p~~~f~~~~~v~~~kk~~lk~Lk~l~k~ad~IIlAT 427 (1157)
++.|||||||+|||+|+++||++|+|+||+|||++|+.++.+|+++++|.+.|.+.+++++|++.|++++++|| |||||
T Consensus 5 mk~LvIaEkPs~Ak~Ia~~Lg~~y~Vt~s~GHl~~l~~~~~~~~~~~~f~p~~~~~~~~~~~~~~lk~l~k~ad-iiiAt 83 (633)
T 2gai_A 5 VKKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGE-LLIAS 83 (633)
T ss_dssp --CEEEESCHHHHHHHHHHHGGGSEEEECCSCSEESCSSSCCEETTTTSEECCEECTTCHHHHHHHHHHHHHSC-EEECC
T ss_pred CcEEEEEeCHHHHHHHHHHhCCCCEEEecccccccCCccCCCCCcccCcCceEEECccHHHHHHHHHHHHhhCC-EEEcC
Confidence 36899999999999999999999999999999999999998899877798889888889999999999999999 99999
Q ss_pred CCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhcccccHhHHHHHHHHHHHhHhhhhhccHHHHh
Q 001106 428 DPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIGFNISPLLWR 507 (1157)
Q Consensus 428 DpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~~d~~L~~A~~AR~~lD~LiG~nlSR~lt~ 507 (1157)
|||||||+|||||+++++ ++++|+|+|||+||+++|++||+||+++|++|++||+||+++|||||||+||+||+
T Consensus 84 D~DREGE~I~~~i~~~~~------~~~~v~R~~fs~iT~~aI~~a~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~ 157 (633)
T 2gai_A 84 DMDREGEAIAWHIARVTN------TLGRKNRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWR 157 (633)
T ss_dssp CSSHHHHHHHHHHHHHHT------CTTSSCBCCCSSCCHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHcC------CCCCeEEEEEccCCHHHHHHHHhCCCCCcHHHHHHHHHhhHHHHHhhHHHCHHHHH
Confidence 999999999999999985 34799999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEEecCcCCCCCCceeeeeecccccccccccccCCHHHHHHH
Q 001106 508 KLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDI 587 (1157)
Q Consensus 508 k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~g~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i 587 (1157)
++++.+|+||||||||+|||+||+||++|+|++||.|.+.+. + |.+.| .+++ .++.++++|+++
T Consensus 158 ~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~--------~--~~a~~-~~~~-----~~~~~~~~a~~~ 221 (633)
T 2gai_A 158 NFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFD--------G--LTAEI-DVKE-----KKFFDAETLKEI 221 (633)
T ss_dssp HHSCCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEET--------T--EEEEE-CCSS-----CCCCCHHHHHHH
T ss_pred hhhcccccCccchHHHHHHHHHHHHHHhCCCcceEEEEEEEe--------e--EEEEE-ecCC-----cccCCHHHHHHH
Confidence 998999999999999999999999999999999999999883 1 77777 3332 246699999999
Q ss_pred HHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHhhcccCCCCCceEEEEEEccCCcCCC
Q 001106 588 EQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHIS 667 (1157)
Q Consensus 588 ~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~Tm~iAQ~LYE~~k~~~~~~~GlITYPRTDS~~Ls 667 (1157)
. .| ..++|.+|+.++++++||+||+|++||++||++|||||++||++||+|||+|+|+ +++.||||||||||++||
T Consensus 222 ~-~~--~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iaQ~LYE~~~~~-~~~~glITYpRTDs~~ls 297 (633)
T 2gai_A 222 Q-SI--DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETK-DGHIAFITYMRTDSTRVS 297 (633)
T ss_dssp H-TC--CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECS-SSEECCBCCSCCSCCCCC
T ss_pred H-hC--CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc-cCccceEEecCCCccccC
Confidence 9 77 6799999999999999999999999999999999999999999999999999997 568899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCChhhhhCCCCHHHHHHHHHHHHHHHHccCCC
Q 001106 668 DEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWSRTMACQMQP 747 (1157)
Q Consensus 668 ~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~q~AH~AI~PT~~~~~p~~l~~~Ls~dE~klY~LI~rRfLAs~~~~ 747 (1157)
+++...++.+|...||..|.+ ..++.|..+ ++.|+||||||||.....|+.+...|+++|++||+||||||||+||+|
T Consensus 298 ~~~~~~~~~~i~~~~g~~~~~-~~~r~~~~~-~~~~~aH~AI~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~ 375 (633)
T 2gai_A 298 DYAKEEARNLITEVFGEEYVG-SKRERRKSN-AKIQDAHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKP 375 (633)
T ss_dssp HHHHHHHHHHHHHHTCGGGBC----------------CCCCBCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHhhhhhcc-cCCccccCC-CCcCCCCCCcccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCch
Confidence 999999999998889887765 344544332 445789999999987556766655799999999999999999999999
Q ss_pred cEEEEEEEEEEecCccEEEEEEEEEEEEcCceecccccchhhhccccccchhhhhHHHhccCCCCCCeEEeeeEEeeecc
Q 001106 748 ATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEENDRHEAFAILNSLKTGDPLYLGEVELKQHH 827 (1157)
Q Consensus 748 a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e~~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~ 827 (1157)
|+|++|+|++.+.++++.|+++|++++++||++||... ++ ..||.|++||.+.+.++.+.+++
T Consensus 376 a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~~----------~~-------~~LP~l~~G~~~~~~~~~~~~~~ 438 (633)
T 2gai_A 376 SQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKTE----------RN-------TGEFPFEEGESVKPVVVKIEEQE 438 (633)
T ss_dssp EEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCCC----------CC-------BCCCCCCTTCEECCCEEEEEEEE
T ss_pred heEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhccc----------cc-------ccCCCcCCCCEEEEeEEEEeeee
Confidence 99999999998822245899999999999999999320 00 35999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeecccchhhhhhhhhcccccccChhhhHHHHHHh
Q 001106 828 TQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETEL 907 (1157)
Q Consensus 828 TkPP~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~lG~~vi~~L~~~f~~l~~p~~TA~~E~~L 907 (1157)
|+||+|||||+||++||+.|||||||||+||++|++|+||.++++.|+||++|+.|+++|+.+|+.|++|+|||.||+.|
T Consensus 439 T~PP~ryTEasLi~~Me~~GIGtpaT~A~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L 518 (633)
T 2gai_A 439 TKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDL 518 (633)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEETTEEEEBHHHHHHHHHHHHHSTTTTSHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHhhccCCCCcccHHHHHHHHhhcCcEEEcCCEEEEChhHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCccHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHhhhCCCccCCCCCCCCCCCCCCCceEEEEecccCceeEE
Q 001106 908 DNVSAGLTEWKGLLVDYWSRFSSYCTCAQSLHIHQVEKMLEKTFGDSLFASLPNKDRSCPVCGEGTLIFKVSRFGAGYFI 987 (1157)
Q Consensus 908 d~Ia~G~~~~~~~l~~F~~~f~~~v~~~~~~~i~~V~k~l~~~~g~~~~~~~~~~~g~CPkCGkg~lv~K~gr~G~~~F~ 987 (1157)
++|++|+.+|++||++|++.|...+..+............ ..-+.... ......|.||+||.+.++.+.+++|. .||
T Consensus 519 ~~I~~G~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-c~cg~~~~-~k~g~~G~CP~Cg~g~l~~r~~k~G~-~f~ 595 (633)
T 2gai_A 519 DEVEQGKKTDKIVLREFYESFSSVFDRNDRIVVDFPTNQK-CSCGKEMR-LSFGKYGFYLKCECGKTRSVKNDEIA-VID 595 (633)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTTCCTTCCCCCCEEEEEE-CTTSCEEE-EEEETTEEEEECSSSCCEECCTTSBC-EEE
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhcccch-hhcCceee-ecccccccCcccCCCcceeecccCCC-eEE
Confidence 9999999999999999999998776554221000000000 00000000 00012467999995578888777774 599
Q ss_pred ecCCCCCCcccccCCCCCCchhhhhhhccCCCCCcccCCCCCccceeeeccCCCc
Q 001106 988 GCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYG 1042 (1157)
Q Consensus 988 GCsnyP~Ck~t~~~~~~~~~~~e~~~~~~~~~~Pr~LG~cPkcGk~V~lK~GrfG 1042 (1157)
||++||+|+|+.+... .-..||+ |..++.+.+++|
T Consensus 596 gCs~yp~C~f~~~~~p-------------------~~~~Cp~-~~~l~~~~~~~g 630 (633)
T 2gai_A 596 DGKIFLGRKDSESGSP-------------------DGRSVEG-KGNLSEKRRKGK 630 (633)
T ss_dssp TTEEEC-------------------------------------------------
T ss_pred eCCCCcCCCCeecCCc-------------------cCCcCCC-CCeEEEEccCCC
Confidence 9999999999875421 1124888 888877777766
|
| >1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A* | Back alignment and structure |
|---|
| >1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A* | Back alignment and structure |
|---|
| >1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A | Back alignment and structure |
|---|
| >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* | Back alignment and structure |
|---|
| >3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D | Back alignment and structure |
|---|
| >1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1 | Back alignment and structure |
|---|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1157 | ||||
| d1mw9x_ | 591 | e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal | 1e-131 | |
| d1i7da_ | 620 | e.10.1.1 (A:) DNA topoisomerase III {Escherichia c | 2e-96 | |
| d1gkub3 | 556 | e.10.1.1 (B:499-1054) Topoisomerase "domain" of re | 7e-87 | |
| d1cy9a_ | 260 | e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal | 3e-43 |
| >d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Length = 591 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prokaryotic type I DNA topoisomerase superfamily: Prokaryotic type I DNA topoisomerase family: Prokaryotic type I DNA topoisomerase domain: DNA topoisomerase I, 67K N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 410 bits (1054), Expect = e-131
Identities = 217/631 (34%), Positives = 320/631 (50%), Gaps = 77/631 (12%)
Query: 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG------------------- 388
GK++V+VES KAK I YLG Y V S GH+RDL
Sbjct: 1 GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKK 60
Query: 389 ----------SVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAW 438
V P ++ +EV + +K A+++ LA+D DREGEAIAW
Sbjct: 61 DERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAW 120
Query: 439 HIVEMLQQQDALHENITVARVVFHEITEASIKVALQAAREIDANLVQAYLARRALDYLIG 498
H+ E++ ++ +RVVF+EIT+ +I+ A E++ + V A ARR +D ++G
Sbjct: 121 HLREVIGG-----DDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVG 175
Query: 499 FNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDT 558
+ +SPLLW+K+ SAGRVQS A+ L+ +RE EI F P+E+W V+A S T
Sbjct: 176 YMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDA--------STTT 227
Query: 559 FSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITST 618
S A + + + + + A + V++ + K P+ITST
Sbjct: 228 PSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITST 287
Query: 619 LQQDAANKLNFSATYTMKLAQKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLI 678
LQQ A+ +L F TM +AQ+LYE G ITYMRTD ++S +A +R I
Sbjct: 288 LQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYI 338
Query: 679 FERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLPAMLSGLLDEDCLKLYSLIWS 738
+ +G + PE + K +N+QEA EAIRP+D+ + L ++ D KLY LIW
Sbjct: 339 SDNFGKKYLPESPNQYASK--ENSQEAREAIRPSDVNVMAESLKD-MEADAQKLYQLIWR 395
Query: 739 RTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN 798
+ +ACQM PA + +G D ++ + F G+ ++ +E+
Sbjct: 396 QFVACQMTPAKYDSTTLTVGAGDFR--LKARGRILRFDGWTKVMPA-------LRKGDED 446
Query: 799 DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTL 858
IL ++ GD L L E+ QH T+PPAR+SE SLVK+LE+ GIGRPSTYAS +
Sbjct: 447 R------ILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASII 500
Query: 859 KVLQDRNYVTVKSRILYPEFRGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWK 918
+QDR YV V++R Y E G +V+ L F E+ +Y FTA ME LD V+ EWK
Sbjct: 501 STIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWK 560
Query: 919 GLLVDYWSRFSSYCTCAQSLHIHQVEKMLEK 949
+L ++S F+ + + EK E+
Sbjct: 561 AVLDHFFSDFTQQ--------LDKAEKDPEE 583
|
| >d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} Length = 620 | Back information, alignment and structure |
|---|
| >d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 556 | Back information, alignment and structure |
|---|
| >d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Length = 260 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1157 | |||
| d1mw9x_ | 591 | DNA topoisomerase I, 67K N-terminal domain {Escher | 100.0 | |
| d1i7da_ | 620 | DNA topoisomerase III {Escherichia coli [TaxId: 56 | 100.0 | |
| d1gkub3 | 556 | Topoisomerase "domain" of reverse gyrase {Archaeon | 100.0 | |
| d1cy9a_ | 260 | DNA topoisomerase I, 67K N-terminal domain {Escher | 100.0 | |
| d1vdda_ | 199 | Recombination protein RecR {Deinococcus radioduran | 94.98 | |
| d1pvma3 | 36 | Hypothetical protein Ta0289 C-terminal domain {Arc | 94.86 | |
| d2fcja1 | 114 | Hypothetical protein RBSTP2199 {Bacillus stearothe | 90.83 |
| >d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prokaryotic type I DNA topoisomerase superfamily: Prokaryotic type I DNA topoisomerase family: Prokaryotic type I DNA topoisomerase domain: DNA topoisomerase I, 67K N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-122 Score=1116.78 Aligned_cols=545 Identities=39% Similarity=0.638 Sum_probs=478.2
Q ss_pred CCeEEEEecchHHHHHHhhcCCCEEEEEeccccccccccCC-----------------------------CCCCCCCCcc
Q 001106 348 GKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSG-----------------------------SVRPDDDFSM 398 (1157)
Q Consensus 348 ~k~LiIaEkPskAk~Ia~~LG~~y~V~~s~GHl~dL~~~~~-----------------------------~v~p~~~f~~ 398 (1157)
||.||||||||+|++|+++||++|+|+||+|||++|+.++. +++|...|.+
T Consensus 1 gK~LiIaEKPs~Ak~Ia~~Lg~~y~V~~~~GHl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (591)
T d1mw9x_ 1 GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEA 80 (591)
T ss_dssp CCEEEEESCHHHHHHHHTTSCTTEEEEECCSCCEESCC-----------------------CHHHHHHHHTEETTTTTEE
T ss_pred CCEEEEECCHHHHHHHHHHhCCCCEEEeccCceeECCCCcccccccccccccccccccccccccccccccCcCcccCCce
Confidence 68999999999999999999999999999999999987642 1344455677
Q ss_pred eEecccchHHHHHHHHHHhccCCeEEEccCCCccccHHHHHHHHHHhhcccccCCccEEEEEEcccCHHHHHHHHHhccc
Q 001106 399 VWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAARE 478 (1157)
Q Consensus 399 ~~~v~~~kk~~lk~Lk~l~k~ad~IIlATDpDREGE~Ia~~Ile~l~~~~~~~~~k~vkRl~fsslT~~aI~~A~~nlr~ 478 (1157)
.|++.+++++|++.|++++++||+||||||||||||+|||||+++|+. .+++++|+|||++|+++|++||+|+++
T Consensus 81 ~~~~~~~~~k~~~~ik~l~k~~d~iiiAtD~DrEGE~I~~~i~~~~~~-----~~~~~~R~~~~~lt~~~i~~A~~n~~~ 155 (591)
T d1mw9x_ 81 HYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGG-----DDARYSRVVFNEITKNAIRQAFNKPGE 155 (591)
T ss_dssp CCEECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCS-----CGGGEEECCCSSCSHHHHHHHHHSCBC
T ss_pred eEEECCchHHHHHHHHHHHhcCCEEEECCCCCccchHHHHHHHHHhcc-----CCCceEEEEeccCCHHHHHHHHhCccc
Confidence 788888899999999999999999999999999999999999999853 356899999999999999999999999
Q ss_pred ccHhHHHHHHHHHHHhHhhhhhccHHHHhhCCCccccCcchhHHHHHHHhHHHHHHhcCCcceEEEEEEEecCcCCCCCC
Q 001106 479 IDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDT 558 (1157)
Q Consensus 479 ~d~~L~~A~~AR~~lD~LiG~nlSR~lt~k~~~~lS~GRVQTPtL~LVveRe~EI~~Fkp~~Yw~I~a~~~~~~~~~~~g 558 (1157)
++++|++|++||+++||+||||+||++|..++..+|+||||||||+|||+||+||++|+|++||.|.+.+... +
T Consensus 156 ~~~~l~~a~~aR~~~D~liG~n~Sr~~t~~~~~~lS~GRVQtPtL~lIv~Re~ei~~f~p~~y~~i~~~~~~~------~ 229 (591)
T d1mw9x_ 156 LNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTP------S 229 (591)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECT------T
T ss_pred ccchHHHHHHHHHHHHHHHHHhcchHHhhhhccccccchhcCcceeeeehhHHHHHhcCCccccceeeeeecC------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred ceeeeeecccccccccccccCCHHHHHHHHHHHccCCeEEEEeeeeeeeecCCCCcchHHHHHHHHHHcCCCHHHHHHHH
Q 001106 559 FSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANFQVIKNSKRSMVRKNPTPYITSTLQQDAANKLNFSATYTMKLA 638 (1157)
Q Consensus 559 ~~f~a~l~~~~~~~~~~~~i~d~e~Ae~i~~~l~~~~~~V~~v~~k~~~~~PP~Pf~ts~LQ~~AskklG~Sa~~Tm~iA 638 (1157)
..|.+.+... .....+++.+++++.++...+....++|++++.+++++.||+||+|++||++|+++|||||++||++|
T Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~pP~pf~l~~Lq~~a~~~~g~s~~~tl~ia 307 (591)
T d1mw9x_ 230 GEALALQVTH--QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMA 307 (591)
T ss_dssp CCEEEEEEEE--ETTEECCCCSHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cchhhhhhcc--ccccccchhhHHHHHHHHhhhhhhhhhhccccccccccCCCCCccHHHHHHHHHHHhCCCHHHHHHHH
Confidence 2444443221 11234567788999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEEEEccCCcCCCHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccccCCCCCCCcccCCh
Q 001106 639 QKLYEGVQLPDGTAAGLITYMRTDGLHISDEAAKEIRSLIFERYGSHHAPEEGPRKYFKKVKNAQEAHEAIRPTDIRRLP 718 (1157)
Q Consensus 639 Q~LYE~~k~~~~~~~GlITYPRTDS~~Ls~~~~~~i~~~i~~~~g~~~~~~~~~r~~~~k~k~~q~AH~AI~PT~~~~~p 718 (1157)
|+|||+ ||||||||||++||+++++.++.+|...||..+.. ..+.... ..+..+++|+||+||.....+
T Consensus 308 Q~LYE~---------g~ITYPRTds~~l~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~~~~~ah~~~~~~~~~~~~ 376 (591)
T d1mw9x_ 308 QRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP-ESPNQYA-SKENSQEAREAIRPSDVNVMA 376 (591)
T ss_dssp HHHHHT---------TSBCCSCCCCCCCCHHHHHHHHHHHHHHTCGGGSC-SSCCCCC---------CCCBCBSCTTCCG
T ss_pred HHHhhC---------CeeeecccCcccccHHHHHHHHHHHHHHhhhhhhh-ccccccc-cccccccccccccccCccccc
Confidence 999996 89999999999999999999999999888877655 2222221 123457899999999865444
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHccCCCcEEEEEEEEEEecCccEEEEEEEEEEEEcCceecccccchhhhccccccch
Q 001106 719 AMLSGLLDEDCLKLYSLIWSRTMACQMQPATVGQIQVDIGNADESIVFRSSCSRVEFLGFQAAYEDVDAGAIRYKENEEN 798 (1157)
Q Consensus 719 ~~l~~~Ls~dE~klY~LI~rRfLAs~~~~a~~e~t~v~i~~~~~~~~F~asg~~i~~~Gw~~vy~~~~~~~~~~~e~~e~ 798 (1157)
..+ ..|+.+|++||+||||||||+||++++++.+++++.+++ +.|+++|++++++||+.+|+.... +++
T Consensus 377 ~~~-~~~~~~e~kvY~LI~rrflas~~~~a~~~~t~~~~~~~~--~~F~a~g~~~~~~Gw~~v~~~~~~------~~~-- 445 (591)
T d1mw9x_ 377 ESL-KDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGD--FRLKARGRILRFDGWTKVMPALRK------GDE-- 445 (591)
T ss_dssp GGC-SSCCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEETT--EEEEEEEEEEEECGGGGGSCCC----------C--
T ss_pred cch-hhcChHHHHHHHHHHHHHHHhccCCeEEEEEEEEeeecC--cEEEEEEEEEEecCceEEeccccc------ccc--
Confidence 433 458999999999999999999999999999999988754 579999999999999999975421 001
Q ss_pred hhhhHHHhccCCCCCCeEEeeeEEeeecccCCCCCCCHHHHHHHHHhcCCCCCCchHHHHHhccccceEEEcCceeeccc
Q 001106 799 DRHEAFAILNSLKTGDPLYLGEVELKQHHTQPPARYSEGSLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRILYPEF 878 (1157)
Q Consensus 799 ~~~~~~~~LP~l~~Gd~v~~~~~~i~e~~TkPP~ryTEasLI~~MEk~GIGTpATrA~IIe~L~~R~YV~~k~k~L~PT~ 878 (1157)
...||.+++||.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|++||||++++++|+||+
T Consensus 446 -----~~~lp~l~~g~~~~~~~~~~~e~~TkPP~~yTeatLi~~ME~~GIGTpATra~iIe~L~~R~Yi~~~~k~l~pT~ 520 (591)
T d1mw9x_ 446 -----DRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEK 520 (591)
T ss_dssp -----CCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred -----cccCCCcCCCCEEEEEEEEEEEeecCCCCCCCHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCEEecCCEEeecH
Confidence 146999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcccccccChhhhHHHHHHhhhHhhcCccHHHHHHHHHHHhhhhh
Q 001106 879 RGRMVSAFLSHYFSEVTDYSFTADMETELDNVSAGLTEWKGLLVDYWSRFSSYC 932 (1157)
Q Consensus 879 lG~~vi~~L~~~f~~l~~p~~TA~~E~~Ld~Ia~G~~~~~~~l~~F~~~f~~~v 932 (1157)
+|+.|+++|+.+|++|++|+|||.||..|++|++|+.++++||++|+..|.+.+
T Consensus 521 ~G~~li~~l~~~~~~l~~p~~Ta~~E~~Ld~I~~G~~~~~~~l~~~~~~~~~~v 574 (591)
T d1mw9x_ 521 MGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQL 574 (591)
T ss_dssp HHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776543
|
| >d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|