Citrus Sinensis ID: 001136
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1143 | 2.2.26 [Sep-21-2011] | |||||||
| O14099 | 425 | Uncharacterized RING fing | yes | no | 0.265 | 0.715 | 0.361 | 2e-56 | |
| Q96PM5 | 261 | RING finger and CHY zinc | yes | no | 0.204 | 0.896 | 0.437 | 5e-51 | |
| Q9CR50 | 261 | RING finger and CHY zinc | yes | no | 0.200 | 0.877 | 0.438 | 5e-50 | |
| Q6IRP0 | 312 | RING finger protein 126-B | N/A | no | 0.039 | 0.144 | 0.456 | 0.0002 | |
| Q6DIP3 | 311 | RING finger protein 126 O | no | no | 0.039 | 0.144 | 0.456 | 0.0002 | |
| Q7T0Q3 | 312 | RING finger protein 126-A | N/A | no | 0.039 | 0.144 | 0.456 | 0.0004 | |
| Q06003 | 461 | Protein goliath OS=Drosop | no | no | 0.062 | 0.156 | 0.324 | 0.0005 | |
| Q9D0C1 | 305 | E3 ubiquitin-protein liga | no | no | 0.039 | 0.147 | 0.456 | 0.0006 | |
| Q9BV68 | 326 | RING finger protein 126 O | no | no | 0.039 | 0.138 | 0.434 | 0.0006 | |
| Q9Y4L5 | 304 | E3 ubiquitin-protein liga | no | no | 0.039 | 0.148 | 0.456 | 0.0008 |
| >sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 | Back alignment and function desciption |
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Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 176/315 (55%), Gaps = 11/315 (3%)
Query: 816 KDIFRMNQNELEAEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGE 875
K + Q+ + +I ++ L +RKA L Q ++ S ++ K + ES + +
Sbjct: 67 KGVDLTQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYL----KYRRTHKKESDENQ 122
Query: 876 -EGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEM 934
D +Y D E+++ GC HY RNCK++ C + +TCR CH+ A DH ++R A M
Sbjct: 123 LSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENM 182
Query: 935 MCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDE--RTVYHCPFCNLCRVGGGLG 992
+CM C K+Q C C M +YYCN CK +DD+ ++ YHC C +CR+G GLG
Sbjct: 183 LCMICSKVQPAAQYCKY--CKNC-MGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLG 239
Query: 993 VDFFHCMTCNCCLGLKLLN-HKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACF 1051
D+FHC TC CL + + N H+C+E+ + NCPIC +++F S E V L C H +H C
Sbjct: 240 DDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCH 299
Query: 1052 QAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARF 1111
+ Y ++Y CP C K++ ++ F ++D + + +P Y + I CNDC + ++
Sbjct: 300 EEYIRTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKY 359
Query: 1112 HWLYHKCGFCGSYNT 1126
H+L HKC C SYNT
Sbjct: 360 HFLGHKCNSCHSYNT 374
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3 | Back alignment and function description |
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| >sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1143 | ||||||
| 224101761 | 1037 | predicted protein [Populus trichocarpa] | 0.881 | 0.971 | 0.593 | 0.0 | |
| 168026033 | 1167 | predicted protein [Physcomitrella patens | 0.930 | 0.911 | 0.515 | 0.0 | |
| 449439089 | 1256 | PREDICTED: uncharacterized protein LOC10 | 0.540 | 0.492 | 0.795 | 0.0 | |
| 449497569 | 1256 | PREDICTED: uncharacterized protein LOC10 | 0.540 | 0.492 | 0.795 | 0.0 | |
| 255586065 | 1251 | zinc finger protein, putative [Ricinus c | 0.539 | 0.493 | 0.781 | 0.0 | |
| 302753854 | 1144 | hypothetical protein SELMODRAFT_75561 [S | 0.909 | 0.909 | 0.488 | 0.0 | |
| 225455984 | 1234 | PREDICTED: uncharacterized protein LOC10 | 0.531 | 0.492 | 0.793 | 0.0 | |
| 356522775 | 1242 | PREDICTED: uncharacterized protein LOC10 | 0.535 | 0.492 | 0.781 | 0.0 | |
| 356531194 | 1238 | PREDICTED: uncharacterized protein LOC10 | 0.535 | 0.494 | 0.777 | 0.0 | |
| 302817133 | 1089 | hypothetical protein SELMODRAFT_447967 [ | 0.895 | 0.939 | 0.474 | 0.0 |
| >gi|224101761|ref|XP_002312411.1| predicted protein [Populus trichocarpa] gi|222852231|gb|EEE89778.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/1142 (59%), Positives = 792/1142 (69%), Gaps = 135/1142 (11%)
Query: 19 VETTSPSSS--KSSDLDEEEDDDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILS 76
++ ++PS + KSS L SPILIF FFHKA+R+ELD LH A+ FAT DI
Sbjct: 8 IDPSTPSKTCLKSSALK------SPILIFLFFHKAIRSELDGLHSAAIAFATTGG-DIEP 60
Query: 77 LSERYRFLHSVYKHHSNAEDEV------IFPALDIRVKNVARKYSLEHEGESNLFDHLFQ 130
L ERY F S+YKHH NAEDEV IFPALDIRVKNVAR YSLEHEGES LFD LF+
Sbjct: 61 LLERYHFFRSIYKHHCNAEDEVGLLISVIFPALDIRVKNVARTYSLEHEGESVLFDQLFE 120
Query: 131 LLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFC 190
LL+ Q++E + +ELAS + ALQTS + QH S EE+
Sbjct: 121 LLDLNMQSEEIYRRELASRTGALQTS---------------IDQHMSKEEE--------- 156
Query: 191 SIPVNMMAEFLPWLSSSISTNEYQDMRKCLSKIVPEEKLLQQVVFTWMKRRNDADKTGSC 250
Q V+F+WMK +D SC
Sbjct: 157 ----------------------------------------QVVIFSWMKGTKLSDTCKSC 176
Query: 251 VDDSRVQCPLDSIANRLIQQMDRINCACDSPKSGKRKYLEPINEVSSIHGTYPIDEILLW 310
D+S+ C DS A L Q + +CAC+S GKRKY+E + +PI+EILLW
Sbjct: 177 EDNSKACCQ-DSGAPTLECQSMKRHCACESSGVGKRKYMELNCDAIISTEFHPINEILLW 235
Query: 311 HNAIRQELNEIAEESRKIQLSGDFTNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGAS 370
HNAI++ELN+I E +R IQLSGDF+NL +FN+RLQFIAEV IFH IAE VIFPAVD
Sbjct: 236 HNAIKRELNDITEAARSIQLSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKVIFPAVDAEL 295
Query: 371 SFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQ 430
SF+ +HAEEE QF+ R LIESIQ+ GA ++ +FY KLCS ADQIM++I++HF EVQ
Sbjct: 296 SFAHEHAEEEIQFDKLRCLIESIQSAGAHTSLTDFYTKLCSQADQIMDSIQKHFQNEEVQ 355
Query: 431 VLPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSLTENEARSVLKNMQSAAPAT 490
V + P G+L V++ +A P+T
Sbjct: 356 V------------------------------SIRPGKCGNL-------VVREDNNACPST 378
Query: 491 DAALI---------ILFSGWGCKGRNQSLCLSPNAVGCCPVKSSSAPSLNSSLFMWETDN 541
+ G G N + A S SAPSLNSSLF WE D
Sbjct: 379 EPVDTQKSSCSNNSCCVPGLGVNTNNLGISSLAVAKSLRSSFSPSAPSLNSSLFNWEMDT 438
Query: 542 SSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRA 601
S ++ + RPID IF+FHKAI KDLEYLD+ES KL+DC+ET LRQF GRFRLLWGLYRA
Sbjct: 439 SPTNIGCSSRPIDNIFQFHKAIRKDLEYLDVESGKLNDCNETLLRQFTGRFRLLWGLYRA 498
Query: 602 HSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHESLPN---A 658
HSNAEDEIVFPALESKE LHNVSHSYTLDHKQEEKLFEDIS LSE++QLHE + N A
Sbjct: 499 HSNAEDEIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALSELTQLHEYMKNTNHA 558
Query: 659 DSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFGRHFSVE 718
D + +D+ R+YNELATKLQGMCKSI+VTLDQH+ EELELWPLF RHFSVE
Sbjct: 559 DDLIGKCADSSDCNDSVRQYNELATKLQGMCKSIRVTLDQHVFREELELWPLFDRHFSVE 618
Query: 719 EQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTMFNEWLDECWKG 778
EQDKIVG+IIG+TGAEVLQSMLPWVTSALTQ+EQ++++DTWK ATKNTMF+EWL+E W+G
Sbjct: 619 EQDKIVGQIIGTTGAEVLQSMLPWVTSALTQEEQNRMMDTWKQATKNTMFSEWLNEWWEG 678
Query: 779 PHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELEAEIRKVYRDPT 838
++ L ++N DLH SLDQSD FKPGWKDIFRMNQNELEAEIRKV RD T
Sbjct: 679 TSAATPLKTASESN------DLHASLDQSDHTFKPGWKDIFRMNQNELEAEIRKVSRDST 732
Query: 839 LDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYK 898
LDPRRKAYL QNLMTSRWIA+QQK PQA G+ S G + L C S+RDP+KQVFGCEHYK
Sbjct: 733 LDPRRKAYLIQNLMTSRWIASQQKSPQARTGDHSNGGDLLGCSPSFRDPDKQVFGCEHYK 792
Query: 899 RNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLS 958
RNCK+RA CCGKLF CRFCHDK SDHSMDRKATSEMMCM CL+IQ +GP CT+ SC G S
Sbjct: 793 RNCKLRATCCGKLFACRFCHDKVSDHSMDRKATSEMMCMRCLRIQPVGPVCTSVSCGGFS 852
Query: 959 MAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKC 1018
MAKYYC++CKFFDDER VYHCPFCNLCRVG GLGVDFFHCM CNCCL +KL +HKC EK
Sbjct: 853 MAKYYCSVCKFFDDERAVYHCPFCNLCRVGTGLGVDFFHCMKCNCCLAMKLADHKCREKG 912
Query: 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMI 1078
LETNCPICCD +FTSS +V+ALPCGH+MH CFQAYTCSHY CPICSKSLGDM++YFGM+
Sbjct: 913 LETNCPICCDDMFTSSASVKALPCGHFMHSTCFQAYTCSHYICPICSKSLGDMSVYFGML 972
Query: 1079 DALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTVSNS 1138
DALLA+EELPEEYR++ QDILCNDC++KG A FHWLYHKC CGSYNTR+IK D+T SN
Sbjct: 973 DALLASEELPEEYRDRCQDILCNDCDKKGTAPFHWLYHKCRLCGSYNTRVIKVDSTDSNC 1032
Query: 1139 ST 1140
+T
Sbjct: 1033 TT 1034
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168026033|ref|XP_001765537.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683175|gb|EDQ69587.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
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| >gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255586065|ref|XP_002533697.1| zinc finger protein, putative [Ricinus communis] gi|223526392|gb|EEF28680.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|302753854|ref|XP_002960351.1| hypothetical protein SELMODRAFT_75561 [Selaginella moellendorffii] gi|300171290|gb|EFJ37890.1| hypothetical protein SELMODRAFT_75561 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356522775|ref|XP_003530021.1| PREDICTED: uncharacterized protein LOC100791354 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] | Back alignment and taxonomy information |
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| >gi|302817133|ref|XP_002990243.1| hypothetical protein SELMODRAFT_447967 [Selaginella moellendorffii] gi|300141952|gb|EFJ08658.1| hypothetical protein SELMODRAFT_447967 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1143 | ||||||
| TAIR|locus:2089678 | 1254 | BTS "BRUTUS" [Arabidopsis thal | 0.528 | 0.481 | 0.726 | 0.0 | |
| TAIR|locus:2011266 | 1254 | AT1G18910 [Arabidopsis thalian | 0.271 | 0.247 | 0.565 | 9.2e-218 | |
| TAIR|locus:2027176 | 1259 | AT1G74770 [Arabidopsis thalian | 0.290 | 0.263 | 0.540 | 2.4e-217 | |
| POMBASE|SPAC2F3.16 | 425 | SPAC2F3.16 "ubiquitin-protein | 0.265 | 0.715 | 0.358 | 1.4e-59 | |
| UNIPROTKB|J9NZR5 | 259 | RCHY1 "Uncharacterized protein | 0.210 | 0.930 | 0.421 | 9.3e-57 | |
| ASPGD|ASPL0000053938 | 522 | AN10185 [Emericella nidulans ( | 0.206 | 0.452 | 0.421 | 2e-56 | |
| UNIPROTKB|Q96PM5 | 261 | RCHY1 "RING finger and CHY zin | 0.200 | 0.877 | 0.429 | 1.4e-55 | |
| RGD|1359180 | 261 | Rchy1 "ring finger and CHY zin | 0.207 | 0.908 | 0.419 | 3e-55 | |
| MGI|MGI:1915348 | 261 | Rchy1 "ring finger and CHY zin | 0.200 | 0.877 | 0.425 | 1.3e-54 | |
| UNIPROTKB|A4IFE2 | 261 | RCHY1 "RCHY1 protein" [Bos tau | 0.200 | 0.877 | 0.421 | 1.7e-54 |
| TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2472 (875.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 446/614 (72%), Positives = 507/614 (82%)
Query: 534 LFMWETDNSSYDVVSAERPIDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFR 593
LF+WE D++S+ AERP+ TIFKFHKAISKDLE+LD+ES KL DCD TF+RQFIGRF
Sbjct: 644 LFIWEMDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFH 703
Query: 594 LLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEVSQLHE 653
LLWG Y+AHSNAED+I+FPALESKE LHNVSHSYTLDHKQEEKLF DI VL+E+S LHE
Sbjct: 704 LLWGFYKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHE 763
Query: 654 SLPNADSEKEDKFSADY------GSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELEL 707
L +DS ED D D +KYNELATKLQGMCKSIK+TLDQHI EELEL
Sbjct: 764 KL-QSDSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELEL 822
Query: 708 WPLFGRHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSALTQDEQSKLIDTWKHATKNTM 767
WPLF +HFS++EQDKIVGRIIG+TGAEVLQSMLPWVTSAL++DEQ++++DTWK ATKNTM
Sbjct: 823 WPLFDKHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTM 882
Query: 768 FNEWLDECWKGPHESSFLTETPDANISHKDSDLHESLDQSDLMFKPGWKDIFRMNQNELE 827
F+EWL+ECWKG +SS TET + KD+D E LDQS +FKPGWKDIFRMNQNELE
Sbjct: 883 FDEWLNECWKGSPDSSS-TETSKPS-PQKDNDHQEILDQSGELFKPGWKDIFRMNQNELE 940
Query: 828 AEIRKVYRDPTLDPRRKAYLAQNLMTSRWIATQQKLPQATAGESSKGEEGLDCYASYRDP 887
AEIRKVY+D TLDPRRK YL QN TSRWIA QQKLP+ A + G+ L C S+RDP
Sbjct: 941 AEIRKVYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKE-AETAVNGDVELGCSPSFRDP 999
Query: 888 EKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGP 947
EKQ++GCEHYKRNCK+RAACC +LFTCRFCHDK SDHSMDRK +EM+CM CLK+Q +GP
Sbjct: 1000 EKQIYGCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGP 1059
Query: 948 NCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGL 1007
CTTPSC+G MAK+YC+ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCLG+
Sbjct: 1060 ICTTPSCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGM 1119
Query: 1008 KLLNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKS 1067
KL+NHKCLEK LETNCPICC+FLFTSSE VRALPCGHYMH ACFQAYTCSHYTCPIC KS
Sbjct: 1120 KLVNHKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKS 1179
Query: 1068 LGDMAIYFGMIDXXXXXXXXXXXYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTR 1127
LGDMA+YFGM+D Y+N+ QDILCNDCE+KG RFHWLYHKCG CGSYNTR
Sbjct: 1180 LGDMAVYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGSYNTR 1239
Query: 1128 LIKNDTTVSNSSTS 1141
+IK++T + STS
Sbjct: 1240 VIKSETIPPDCSTS 1253
|
|
| TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1143 | |||
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 3e-30 | |
| pfam05495 | 74 | pfam05495, zf-CHY, CHY zinc finger | 2e-26 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 1e-24 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 2e-13 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 3e-10 | |
| pfam13639 | 46 | pfam13639, zf-RING_2, Ring finger domain | 1e-09 | |
| cd00162 | 45 | cd00162, RING, RING-finger (Really Interesting New | 2e-05 | |
| COG5243 | 491 | COG5243, HRD1, HRD ubiquitin ligase complex, ER me | 4e-05 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 1e-04 | |
| cd12109 | 158 | cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL | 1e-04 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 2e-04 | |
| pfam00097 | 40 | pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING | 0.002 | |
| COG3945 | 189 | COG3945, COG3945, Uncharacterized conserved protei | 0.004 |
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-30
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 48 FHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRV 107
H+A+R EL L +LA A G D +L+ER+RFL + HH AE+E++FPAL RV
Sbjct: 6 EHRAIRRELGRLARLAGALAAGGPDDARALAERFRFLATELHHHHTAEEELLFPALRERV 65
Query: 108 K--NVARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEE 165
V EH L L LL + D +ELA+ AL+T++ +H+ +EE
Sbjct: 66 PLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALREHLDEEE 125
Query: 166 QQVFP 170
+++FP
Sbjct: 126 EELFP 130
|
Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130 |
| >gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
| >gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1143 | |||
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 100.0 | |
| PF14599 | 61 | zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. | 99.88 | |
| PF05495 | 71 | zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc | 99.82 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 99.37 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 99.35 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 99.18 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 99.17 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 99.08 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 99.06 | |
| COG4357 | 105 | Zinc finger domain containing protein (CHY type) [ | 98.98 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 98.91 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.89 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 98.85 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 98.82 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 98.81 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 98.8 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 98.77 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 98.75 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.73 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 98.59 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 98.49 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 98.48 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.45 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 98.42 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 98.4 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.36 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.32 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.32 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.15 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 98.14 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.05 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.98 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.97 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 97.93 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 97.9 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 97.89 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 97.88 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.83 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 97.65 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.64 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.6 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.6 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 97.6 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.43 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.4 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.31 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 97.24 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 97.23 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.19 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.0 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 96.99 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.96 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 96.96 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 96.93 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 96.81 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 96.67 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 96.48 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 96.2 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.98 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 95.91 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 95.82 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.58 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.56 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.43 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.42 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.12 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 94.89 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 94.87 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 94.71 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 94.16 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 94.06 | |
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 94.04 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 93.66 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.61 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 92.3 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 92.09 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 91.71 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 91.36 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 90.81 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.49 | |
| KOG3970 | 299 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.3 | |
| KOG3268 | 234 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.57 | |
| KOG2272 | 332 | consensus Focal adhesion protein PINCH-1, contains | 89.43 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 89.26 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 89.11 | |
| COG5592 | 171 | Uncharacterized conserved protein [Function unknow | 88.45 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 88.27 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.21 | |
| KOG1701 | 468 | consensus Focal adhesion adaptor protein Paxillin | 88.13 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 88.11 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 88.0 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 87.95 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 87.88 | |
| PF12906 | 47 | RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. | 87.69 | |
| PF03854 | 50 | zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc | 87.61 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.18 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 87.1 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.96 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.13 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 85.97 | |
| PRK14890 | 59 | putative Zn-ribbon RNA-binding protein; Provisiona | 85.56 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 84.92 | |
| TIGR00100 | 115 | hypA hydrogenase nickel insertion protein HypA. In | 83.58 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 83.48 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.0 | |
| PRK00564 | 117 | hypA hydrogenase nickel incorporation protein; Pro | 82.71 | |
| PHA02862 | 156 | 5L protein; Provisional | 82.38 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 82.17 | |
| COG5592 | 171 | Uncharacterized conserved protein [Function unknow | 82.11 | |
| PHA02825 | 162 | LAP/PHD finger-like protein; Provisional | 81.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 81.32 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.18 | |
| TIGR02481 | 126 | hemeryth_dom hemerythrin-like metal-binding domain | 80.59 | |
| PRK12380 | 113 | hydrogenase nickel incorporation protein HybF; Pro | 80.36 |
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=512.96 Aligned_cols=270 Identities=49% Similarity=1.020 Sum_probs=247.9
Q ss_pred HHHHHHHhhhCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccccCCcccChhhhcccCCCCCCccccc
Q 001136 853 TSRWIATQQKLPQATAGESSKGEEGLDCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATS 932 (1143)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~ 932 (1143)
|+||++.|+....... ...+..+++.|++..++||+||+|+|++++|||+++|+|++||++..+|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~ 73 (276)
T KOG1940|consen 1 MSRLAADQSFLEEFAQ-------ALSSIHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVY 73 (276)
T ss_pred CccchhhhhhhHHHHh-------hhhhcccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhh
Confidence 3566666544322222 122346788899999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCCCCCCCCCCCCcceeEeccccccccCC-CCcccCCCCCccccCCCCCccccccCCccccccccc-c
Q 001136 933 EMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDE-RTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-L 1010 (1143)
Q Consensus 933 ~~~C~~C~~~q~~~~~C~~~~cc~~~f~~y~C~~C~~~d~~-~~~yhC~~CgiCr~g~~l~~~~~hC~~C~~C~~~~~-~ 1010 (1143)
+++||.|.++||+++.|.+ |+..+|+|||.+||+|||+ ..||||+.|||||+|.++ +||||++|+.|++..+ +
T Consensus 74 ~~~C~~C~~~q~~~~~c~~---c~~~~g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~ 148 (276)
T KOG1940|consen 74 ELLCMKCRKIQPVGQICSN---CHVELGEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSN 148 (276)
T ss_pred hhhhhhHHhhhhhhhcccc---chhhhhhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhccc
Confidence 9999999999999999999 5788999999999999988 599999999999999885 9999999999999999 6
Q ss_pred cccccccccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChh
Q 001136 1011 NHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEE 1090 (1143)
Q Consensus 1011 ~H~C~e~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~ 1090 (1143)
.|+|+|++++.+||||.+++|++...+..++|||.+|..|+..+...+|+||+|.+ +.||..+|+++|.+++.+|||++
T Consensus 149 ~H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~ 227 (276)
T KOG1940|consen 149 WHKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEE 227 (276)
T ss_pred ccchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCch
Confidence 69999999999999999999999999999999999999999999888899999999 99999999999999999999999
Q ss_pred hhcCcceEEcCCCCCCCcccchhhcccCCCCCCccccccccCCCC
Q 001136 1091 YRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKNDTTV 1135 (1143)
Q Consensus 1091 y~~~~~~i~CndC~~~s~~~~h~l~~kC~~C~syNt~~~~~~~~~ 1135 (1143)
|.+++++|+||||+..++++|||||+||+.|+|||||+++.+...
T Consensus 228 y~~~~~~i~cndC~~~~~~k~~~l~~kc~~c~~~~~r~~~~~~~~ 272 (276)
T KOG1940|consen 228 YKNKTQDILCNDCGSGTNVKYHILYHKCGKCGSYNTRMISDPSKY 272 (276)
T ss_pred hhchhheeeccCCCCCCccceehhhhhCCCcccceeeeccCCCcc
Confidence 999999999999999999999999999999999999999844333
|
|
| >PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A | Back alignment and domain information |
|---|
| >PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5592 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A | Back alignment and domain information |
|---|
| >PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14890 putative Zn-ribbon RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00100 hypA hydrogenase nickel insertion protein HypA | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK00564 hypA hydrogenase nickel incorporation protein; Provisional | Back alignment and domain information |
|---|
| >PHA02862 5L protein; Provisional | Back alignment and domain information |
|---|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
| >COG5592 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA02825 LAP/PHD finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain | Back alignment and domain information |
|---|
| >PRK12380 hydrogenase nickel incorporation protein HybF; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1143 | ||||
| 2k2c_A | 137 | Solution Nmr Structure Of N-Terminal Domain Of Huma | 9e-25 | ||
| 2dkt_A | 143 | Solution Structure Of The Chy Zinc Finger Domain Of | 9e-24 | ||
| 2k2d_A | 79 | Solution Nmr Structure Of C-Terminal Domain Of Huma | 2e-05 | ||
| 2ecm_A | 55 | Solution Structure Of The Ring Domain Of The Ring F | 3e-05 | ||
| 2ect_A | 78 | Solution Structure Of The Zinc Finger, C3hc4 Type ( | 1e-04 | ||
| 2jrj_A | 52 | Solution Structure Of The Human Pirh2 Ring-H2 Domai | 3e-04 |
| >pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 | Back alignment and structure |
|
| >pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 | Back alignment and structure |
| >pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 | Back alignment and structure |
| >pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 | Back alignment and structure |
| >pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 | Back alignment and structure |
| >pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 3e-52
Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 880 CYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHC 939
R+ + GCEHY R C ++A CC KL+TCR CHD DH +DR E+ C++C
Sbjct: 5 SSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINC 64
Query: 940 LKIQAIGPNCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCM 999
K+Q C C +YYC+IC FD ++ YHC C +CR+G DFFHC+
Sbjct: 65 EKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCL 119
Query: 1000 TCNCCLGLKLL-NHKCLEKCLET 1021
CN CL L HKC+E +
Sbjct: 120 KCNLCLTTNLRGKHKCIESGPSS 142
|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55 | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1143 | |||
| 2dkt_A | 143 | Ring finger and CHY zinc finger domain- containing | 100.0 | |
| 2k2d_A | 79 | Ring finger and CHY zinc finger domain- containing | 99.87 | |
| 2p0n_A | 172 | Hypothetical protein NMB1532; structural genomics, | 99.7 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 99.45 | |
| 2p0n_A | 172 | Hypothetical protein NMB1532; structural genomics, | 99.43 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 99.14 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 99.09 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 99.07 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 99.03 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 99.01 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 99.01 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.99 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.96 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.91 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.88 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.87 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.8 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.79 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.77 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.73 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.67 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 98.63 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.63 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.62 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 98.62 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.59 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.56 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.55 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.52 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.5 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.49 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.47 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.46 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.46 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.46 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.45 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 98.43 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.37 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 98.36 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.36 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.33 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.32 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.32 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.31 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 98.3 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.3 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 98.25 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 98.2 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 98.2 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 98.18 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 98.18 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.14 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.1 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 98.09 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 98.01 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.01 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 97.97 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 97.97 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 97.96 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 97.94 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 97.91 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 97.89 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 97.87 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 97.82 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 97.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.69 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 97.64 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 97.57 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.57 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 97.55 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 97.49 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 97.42 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 97.36 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 97.09 | |
| 3u9j_A | 160 | F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i | 97.04 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 96.99 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 96.76 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.52 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 95.41 | |
| 3u9j_A | 160 | F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i | 93.25 | |
| 2ko5_A | 99 | Ring finger protein Z; lassa fever virus-Z, negati | 91.69 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 84.34 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 83.29 | |
| 2jrp_A | 81 | Putative cytoplasmic protein; two-zinc binding pro | 82.24 |
| >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=386.15 Aligned_cols=138 Identities=41% Similarity=0.990 Sum_probs=132.5
Q ss_pred CCCCCCCCcccCCCCCccccccccccccccCCcccChhhhcccCCCCCCccccceeeccccccccccCCCCCCCCCCCCc
Q 001136 879 DCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLS 958 (1143)
Q Consensus 879 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc~~~ 958 (1143)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++|++++.|++ ||..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~---Cg~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED---CSTL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS---SCCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC---CCcc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999998 5999
Q ss_pred ceeEeccccccccCCCCcccCCCCCccccCCCCCccccccCCccccccccc-ccccccccccCC
Q 001136 959 MAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLEKCLET 1021 (1143)
Q Consensus 959 f~~y~C~~C~~~d~~~~~yhC~~CgiCr~g~~l~~~~~hC~~C~~C~~~~~-~~H~C~e~~~~~ 1021 (1143)
|++|||+||||||++|+||||++|||||+|+ |++||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999997 599999999999999999 899999998764
|
| >2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1143 | ||||
| d2dkta2 | 56 | g.93.1.1 (A:82-137) RING finger and CHY zinc finge | 7e-25 | |
| d2dkta1 | 74 | g.89.1.1 (A:8-81) RING finger and CHY zinc finger | 7e-21 | |
| d1iyma_ | 55 | g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati | 9e-07 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 4e-06 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 7e-05 | |
| d3dplr1 | 88 | g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S | 1e-04 | |
| d1ur6b_ | 52 | g.44.1.1 (B:) Not-4 N-terminal RING finger domain | 2e-04 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 4e-04 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 5e-04 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 5e-04 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.3 bits (240), Expect = 7e-25
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 961 KYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKLL-NHKCLE 1016
+YYC+IC FD ++ YHC C +CR+G DFFHC+ CN CL L HKC+E
Sbjct: 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
|
| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1143 | |||
| d2dkta2 | 56 | RING finger and CHY zinc finger domain-containing | 99.9 | |
| d2dkta1 | 74 | RING finger and CHY zinc finger domain-containing | 99.59 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 99.19 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.99 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.92 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.88 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.87 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.83 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 98.39 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.37 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.32 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.32 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.3 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.21 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 98.01 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 97.91 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.56 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 97.48 | |
| d1vd4a_ | 62 | Transcription initiation factor TFIIE-alpha {Human | 85.88 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2.6e-25 Score=182.05 Aligned_cols=55 Identities=51% Similarity=1.307 Sum_probs=52.8
Q ss_pred eeEeccccccccCCCCcccCCCCCccccCCCCCccccccCCccccccccc-ccccccc
Q 001136 960 AKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLE 1016 (1143)
Q Consensus 960 ~~y~C~~C~~~d~~~~~yhC~~CgiCr~g~~l~~~~~hC~~C~~C~~~~~-~~H~C~e 1016 (1143)
|+|||+|||||||||++|||++|||||||++ ++||||++||+|+++++ ++|+|+|
T Consensus 1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE 56 (56)
T d2dkta2 1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE 56 (56)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred CceECCcCCcccCCCCcccCCCCCceeecCC--ccccccCccccccCcccCCCccccC
Confidence 6899999999999999999999999999985 89999999999999999 9999997
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| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
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| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
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| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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